Species tree estimation from gene trees via weighted quartets

A tutorial on how to annotate and interpret novel mammalian reference genomes

Daily usage script recording

Code repository for the Global Ant Genomics Alliance

一些用于画图的R脚本

Github from the Intro2popGen physalia course

An introduction to Genome Annotation of non-model organisms

This is the standalone version of the EviAnn pipeline

Paint chromosomes with BUSCOs

Mollusca Linkage groups constructed by the representative species from Conchifera and Aculifera, which enables to investigate the chromosomal event.

A comparative annotation toolkit (CAT) pipeline for 304 fly genomes.

🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

PyRate is a program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework.

This repositories contains a list of python scripts projects from beginner level advancing slowly. More code snippets to be added soon. feel free to clone this repo

This analysis describes how to quickly get multiple sequence alignment maf file after whole genome alignment by wfmash and roast merge. Then based on PHAST tool to complete the evolutionary acceler…

Nextflow template for fast pipeline generation

Multi-genome synteny block visualization tool

Comparative Genomics Lab - Workshop on Genomics

ALL the codes used in the study title "Comparative genomics provides insights into chromosomal evolution and immunological adaptation in horseshoe bats"

Complete assemblies of non-human primate genomes

BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins

parallelLastz: Running Lastz in parallel

Scripts and pipelines used in the preprint Bortoluzzi et al. (2024)

Polygenetic Basis of Seedlessness in Grapevine (Vitis vinifera L.)