Machine learning for NeuroImaging in Python

Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

Collection of scripts to fit T2* MRI data

Python tools for querying and manipulating BIDS datasets.

TE-dependent analysis of multi-echo fMRI

Brain Imaging Data Structure (BIDS) Specification

fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisit…

rapidtide - a suite of programs for doing time lag correlation analysis on fMRI data

Tools to simulate multi-echo fMRI time series

Processing tools for magnetic resonance images of infant brains

Common workflows for MRI (anatomical, functional, diffusion, etc)

A python client to query TemplateFlow via pyBIDS

Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes

The NiPreps' Reporting and Visualization system - report templates and "reportlets"

little helper to ease DICOM conversion to ready-to-share folder with heuristics

Website for the NBC lab

xDF estimates variance of Pearson's correlations among highly autocorrelated time series.

Workflows and interfaces for neuroimaging packages

Automated feature extraction in Python

Coordinate- and Image-based meta-analysis in Python

Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.

Post-processing of fMRIPrep , NiBabies, HCP, and DCAN outputs

Matlab code for performing image reconstruction in MRI and performing the NORDIC denoising

Complex Principal Component Analysis of fMRI in Python

Python library for neuroimaging transforms.

Patch based denoising method, targeting fMRI thermal noise removal.

MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and appar…

📐 Website for Reproducible Brain Charts Project

Main website for Physiopy documentation.