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Whippet.jl Public
Lightweight and Fast; RNA-seq quantification at the event-level
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BioSequencesKmers.jl Public
Forked from BioJulia/BioSequences.jlKmers from BioSequences 2.0.5
Julia MIT License UpdatedDec 12, 2023 -
FitHiChIP Public
Forked from ay-lab/FitHiChIPStatistically Significant loops from HiChIP data
R MIT License UpdatedAug 26, 2022 -
FMIndexes.jl Public
Forked from BioJulia/FMIndexes.jlFM-index for full-text search
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EvoDuplexes.jl Public
A Julia package to efficiently fold all local and long-range RNA duplexes.
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deSALT Public
Forked from ydLiu-HIT/deSALTdeSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
C MIT License UpdatedJan 5, 2020 -
BrindlePlots.jl Public
Visualization package for Whippet.jl
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WaveletMatrices.jl Public
Forked from BioJulia/WaveletMatrices.jlThe Wavelet Matrix
Julia Other UpdatedMar 14, 2019 -
SuffixArrays.jl Public
Forked from JuliaCollections/SuffixArrays.jlNative Julia suffix array implementation; Derived from sais
Julia Other UpdatedMar 14, 2019 -
Aligater Public
Software suite for detection/analysis of chimeric RNAs from LIGR-seq data
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Bio.jl Public
Forked from BioJulia/Bio.jlBioinformatics and Computational Biology Infrastructure for Julia
Julia Other UpdatedDec 5, 2016 -
vast-tools Public
Forked from vastgroup/vast-toolsA toolset for profiling alternative splicing events in RNA-Seq data.
Perl MIT License UpdatedNov 14, 2016 -
IntervalTrees.jl Public
Forked from BioJulia/IntervalTrees.jlA data structure for efficient manipulation of sets of intervals
Julia Other UpdatedAug 18, 2016 -