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RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Nextflow 1,106 798 Updated Sep 18, 2025

Zotero plugin to automatically move attachments and link them

JavaScript 990 20 Updated Sep 3, 2025

A flexible pipeline for complete analysis of bacterial genomes

Nextflow 475 78 Updated Sep 16, 2025

Dashboard for NIH changes since January 20, 2025

HTML 1 Updated Sep 24, 2025

Emoji picker for Wayland using wofi and wl-clipboard

Shell 79 16 Updated Nov 30, 2024

High performance self-hosted photo and video management solution.

TypeScript 77,733 4,115 Updated Sep 26, 2025
Python 91 17 Updated Sep 16, 2025

Simple and efficient SDF calculation.

Julia 25 7 Updated Apr 27, 2023

Get the contributor stats summary from all repos of any given organization

Go 237 33 Updated Sep 18, 2025

General bibliography manager in pure Julia

Julia 5 Updated Jun 25, 2021

Text and code for the second edition of Think Bayes, by Allen Downey.

Jupyter Notebook 1,960 1,529 Updated Sep 25, 2025

Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.

Nextflow 33 17 Updated Aug 29, 2025

Retrieve author and publication information from Google Scholar in a friendly, Pythonic way without having to worry about CAPTCHAs!

Python 1,712 340 Updated Apr 28, 2025

A new language server for Julia

Julia 150 5 Updated Sep 25, 2025

Intensive Julia workshop that takes you from zero to hero

Jupyter Notebook 195 44 Updated Sep 23, 2025

Code needed to reproduce results of BinBencher paper

TeX 1 1 Updated Mar 25, 2025

Import all tweets exported from X/Twitter to a Bluesky account.

TypeScript 630 39 Updated Sep 10, 2025

The Social Web Toolkit

Go 175 14 Updated Sep 26, 2025

Mirror of https://code.tecosaur.net/tec/RestClient.jl

Julia 18 Updated Aug 14, 2025

Julia for HPC Course @ UCL ARC

Jupyter Notebook 93 4 Updated Mar 7, 2024
Julia 37 3 Updated Aug 18, 2025
Python 3 1 Updated Nov 10, 2022

High-performance Julia package for performing lineage collapsing on immune repertoire sequencing data.

Julia 3 Updated Mar 24, 2025

A Julia package for running IgBLAST analyses on immunoglobulin (Ig) and T cell receptor (TCR) sequences.

Julia 3 Updated Sep 8, 2025

Benchmarking tool for spatial transcriptomics segmentation

Julia 7 Updated Oct 8, 2024

An acausal modeling framework for automatically parallelized scientific machine learning (SciML) in Julia. A computer algebra system for integrated symbolics for physics-informed machine learning a…

Julia 1,556 232 Updated Sep 26, 2025
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