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chame Public
Chromatin analysis module
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pqdata Public
AnnData and MuData I/O based on Parquet files
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dragonnfruit Public
Forked from jmschrei/dragonnfruitA method for analyzing scATAC-seq experiments.
Python MIT License UpdatedJan 27, 2025 -
chrombpnet Public
Forked from kundajelab/chrombpnetBias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
Jupyter Notebook MIT License UpdatedAug 8, 2024 -
y2ave_seqspecs Public
Forked from detrout/y2ave_seqspecsWork in progress seqspecs for Y2AVE processing for IGVF
UpdatedJul 3, 2024 -
anndata Public
Forked from scverse/anndataAnnotated data.
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 27, 2022 -
staged-recipes Public
Forked from conda-forge/staged-recipesA place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 21, 2022 -
mudata-feedstock Public
Forked from conda-forge/mudata-feedstockA conda-smithy repository for mudata.
BSD 3-Clause "New" or "Revised" License UpdatedJul 3, 2022 -
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single-cell-reading-list Public
A curated selection of blog posts on single-cell data analysis
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versioned-hdf5 Public
Forked from deshaw/versioned-hdf5Versioned HDF5
Python Other UpdatedJul 12, 2021 -
awesome-multi-omics Public
Forked from mikelove/awesome-multi-omicsList of software packages for multi-omics analysis
MIT License UpdatedJul 1, 2021 -
General Public
Forked from JuliaRegistries/GeneralThe official registry of general Julia packages
Julia MIT License UpdatedJun 11, 2021 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedMay 28, 2021 -
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crispra_zga Public
Code for CRISPR activation screen with single-cell RNA-seq readout studying zygotic genome activation
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McQ Public
Multiplexed COVID-19 quantification
Makefile BSD 3-Clause "New" or "Revised" License UpdatedDec 6, 2020 -
recommonmark Public
Forked from readthedocs/recommonmarkA markdown parser for docutils
Python MIT License UpdatedSep 6, 2020 -
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echinus Public
Get a gene expression table from transcript compatibility counts
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SoupX Public
Forked from constantAmateur/SoupXR package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
R UpdatedFeb 26, 2020 -
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git_btm2017 Public
Forked from Tom-TBT/git_btm2017Example used for the git course given at the EMBL btm 2017
Python UpdatedOct 17, 2017