long read RNA-seq quantification

Simon's Data Club - Reference data for Galaxy servers

HMMRATAC peak caller for ATAC-seq data

Truly parallel gzip decompression

Sampling profiler for Python programs

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

Moderator Templates for https://www.biostars.org/

Script to make data library of RefSeq reference genomes for specified genus

DEPRECATED: Python CommonMark parser

Some useful functions for gene expression analyses

BigWig manpulation tools using libBigWig and htslib

Extension for Jupyter which integrates igv.js

Aggregate results from bioinformatics analyses across many samples into a single report.

A probabilistic programming language in TensorFlow. Deep generative models, variational inference.

Rapid and robust analysis of RNA-Seq experiments.

Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes

Python wrapper around the popular ChIP-Seq peak caller SICER

Conda recipes for the bioconda channel.

📍 Repel overlapping text labels away from each other in your ggplot2 figures.

python wrapper to dpryan79's bigwig library using cffi

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

A local realigner around InDels for MethylSeq data

RNA-seq aligner

Specifications of SAM/BAM and related high-throughput sequencing file formats

A fast and sensitive gapped read aligner