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abbreviations.txt

@@ -241,5 +241,7 @@
 
 
 .. |citeShiJac18| replace::
-   C.Shi,
-   xINTERPDF: a GUI program for analyzing intermolecular pair distribution functions of organic compounds from X-ray total scattering data, under review, *J. Appl. Cryst.*, (2018).
+   C. Shi,
+   xINTERPDF: a GUI program for analyzing intermolecular pair
+   distribution functions of organic compounds from X-ray total
+   scattering data, under review, *J. Appl. Cryst.*, (2018).

products/xinterpdf.rst

@@ -1,28 +1,40 @@
-##########
+#########
 xINTERPDF
-##########
-
-xINTERPDF is a Python GUI program for analyzing X-ray pair distribution function (PDF) data of organic compounds collected at synchrotron and/or laboratory X-ray sources. It uses DiffPy-CMI as a backend for simulation of PDFs. 
-
-Currently it supports: 
-
-* The study of intermolecular interaction (e.g. hydrogen bonds) by subtracting out the scattering signal(s) of single molecule(s) in real space. 
-* The PDF model fit of the crystalline organic compound using the method proposed by Prill *et al*. (`J. Appl. Cryst., 48, 171-178, 2015 <http://scripts.iucr.org/cgi-bin/paper?S1600576714026454>`__). 
-* The phase quantification of physical mixtures of organics. 
+#########
+
+xINTERPDF is a Python GUI program for analyzing X-ray pair distribution
+function (PDF) data of organic compounds collected at synchrotron and/or
+laboratory X-ray sources. It uses DiffPy-CMI as a backend for simulation
+of PDFs.
+
+Currently it supports:
+
+* The study of intermolecular interaction (e.g. hydrogen bonds) by
+  subtracting out the scattering signal(s) of single molecule(s) in real
+  space.
+* The PDF model fit of the crystalline organic compound using the method
+  proposed by Prill *et al*. (`J. Appl. Cryst., 48, 171-178, 2015
+  <http://scripts.iucr.org/cgi-bin/paper?S1600576714026454>`__).
+* The phase quantification of physical mixtures of organics.
 * Generate Score/Scree plots based on Principle Component Analysis (PCA).
 
-A video demo about installation and usage is available at `https://www.youtube.com/watch?v=lAFZ5VYEH1g <https://www.youtube.com/watch?v=lAFZ5VYEH1g>`__. The code for xINTERPDF is hosted at `GitHub page <https://github.com/curieshicy/xINTERPDF>`__.
+A video demo about installation and usage is available at
+`https://www.youtube.com/watch?v=lAFZ5VYEH1g
+<https://www.youtube.com/watch?v=lAFZ5VYEH1g>`__. The code for xINTERPDF
+is hosted at `GitHub page <https://github.com/curieshicy/xINTERPDF>`__.
 
 
 
 .. figure:: ../images/xinterpdf.png
    :align: center
 
-This is a first release of the program (v.0.1.0). Comments and suggestions are welcome. Please send an email to Chenyang Shi at cs3000@columbia.edu and/or post your questions at diffpy-users Google Groups. 
-
+This is a first release of the program (v.0.1.0). Comments and
+suggestions are welcome. Please send an email to Chenyang Shi at
+cs3000@columbia.edu and/or post your questions at diffpy-users
+Google Groups.
 
 Getting Started
-=================
+===============
 
 The xINTERPDF package requires Python 2.7 and the following dependency packages:
 
@@ -38,7 +50,12 @@ See the :doc:`xINTERPDF license <xinterpdflicense>` for terms and conditions of
 Installation
 ------------
 
-xINTERPDF can be installed on Linux and macOS machines. The recommended way to install this package is through conda. Please visit `https://www.continuum.io/downloads <https://www.continuum.io/downloads>`__, and select Python 2.7 version to download and install. Once conda is installed, you can follow the steps below to install xINTERPDF.
+xINTERPDF can be installed on Linux and macOS machines. The recommended
+way to install this package is through conda. Please visit
+`https://www.continuum.io/downloads
+<https://www.continuum.io/downloads>`__, and select Python 2.7 version
+to download and install. Once conda is installed, you can follow the
+steps below to install xINTERPDF.
 
 *Step 1: Add the diffpy conda channel to your conda configuration.* ::
 
@@ -48,28 +65,33 @@ xINTERPDF can be installed on Linux and macOS machines. The recommended way to i
 
     conda create –c curieshicy –n xinterpdf xinterpdf
 
-This command first adds a *curieshicy* channel, then creates a virtual environment *xinterpdf*, before finally install the *xinterpdf* program. Note that you can name the environment anything you choose by passing it a different name after the *-n* flag in the command.
+This command first adds a *curieshicy* channel, then creates a virtual
+environment *xinterpdf*, before finally install the *xinterpdf* program.
+Note that you can name the environment anything you choose by passing it
+a different name after the *-n* flag in the command.
 
 *Step 3: Activate the virtual environment and start the program.* ::
 
     source activate xinterpdf
-	xinterpdf
+    xinterpdf
 
-The first command starts the virtual environment and the second invokes the main GUI window of the xINTERPDF program.
+The first command starts the virtual environment and the second invokes
+the main GUI window of the xINTERPDF program.
 
 User Guide
--------------
+----------
+
 Please see `User manual <../doc/xinterpdf/xINTERPDF_User_Guide_20180615.pdf>`__
 for more details.
 
 References
--------------
+----------
 
 If you use this software in a research work which leads to publication,
 we ask you to acknowledge the use of xINTERPDF by citing the following
 papers:
 
-* |citeShiJac18| 
+* |citeShiJac18|
 * |citeJuhasAca15|