ceesem
Follow
-
ossify Public
Neuronal morphology visualization and analysis
-
-
morphsync Public
Forked from bdpedigo/morphsyncFramework for syncing representations and features of morphology
Python UpdatedSep 11, 2025 -
SWDB_2025_Connectomics Public
Forked from AllenSWDB/SWDB_2025_ConnectomicsJupyter Notebook MIT License UpdatedAug 19, 2025 -
-
-
neuroglancer Public
Forked from google/neuroglancerWebGL-based viewer for volumetric data
TypeScript Apache License 2.0 UpdatedJun 26, 2025 -
-
-
hydrated-skeletons Public
Pipeline for l2 skeleton hydratation (adding synapses and features)
UpdatedJun 20, 2025 -
l2label Public
Predict neuronal labels from level-2 level properties
-
-
-
skeleton_plot Public
Forked from AllenInstitute/skeleton_plottools for plotting swc and meshparty skeletons
Jupyter Notebook UpdatedAug 15, 2024 -
apical_classifier Public
Tools for training and applying an apical classifier on skeleton data from the chunkedgraph
-
DistanceDependentConnectivity Public
Forked from andi-bergeson/allen_summerworkshopMeasure distance-dependent connection probability in EM dataset
Jupyter Notebook MIT License UpdatedMay 22, 2024 -
neuvue-manage Public
Forked from aplbrain/neuvue-manageResources and documentation to create and manage proofreading tasks on NeuVue
Jupyter Notebook Apache License 2.0 UpdatedMar 1, 2024 -
neuvue-app Public
Forked from aplbrain/neuvue-appMICrONS Proofreading App
JavaScript Apache License 2.0 UpdatedJan 22, 2024 -
neuvue-client Public
Forked from aplbrain/neuvue-clientpython client for neuvue-queue
Python Apache License 2.0 UpdatedJan 22, 2024 -
scryingstone Public
Code for building neuroglancer links from edit logs
-
-
table-bridge Public
Dataframe comparison and google sheet interaction
Python BSD 3-Clause "New" or "Revised" License UpdatedAug 10, 2023 -
choosy Public
A lightweight package for value-based sampling of rows/counts from a dataframe
Python BSD 3-Clause "New" or "Revised" License UpdatedJul 3, 2023 -
swdb_2023 Public
Forked from AllenInstitute/swdb_2023Summer Workshop on the Dynamic Brain 2023
Jupyter Notebook Other UpdatedJun 23, 2023 -
refid2bib Public
biorxiv, doi, and arxiv ids -> bibtex entry
-
feature_clustering Public
Minnie column project excitatory neuron feature classification
Python UpdatedMay 22, 2023 -
-
-
-
cortical-layers Public
Forked from AlexTMallen/cortical-layersAutomatically detecting cortical layers of MICrONS segmentation data
Jupyter Notebook UpdatedOct 22, 2021