Workflow Description Language developer tools & local runner

Workflow Description Language - Specification and Implementations

Python based pipeline management software for clusters that makes running recursive and dynamically scheduled computations straightforward. So far works with gridEngine, lsf, parasol and on multi-c…

tools for working with variation graphs

Method for inferring path posterior probabilities and abundances from pangenome graph read alignments

memory mapped multimap, multiset, and implicit interval tree based on an in-place parallel sort

An easy interface to query the EC2 metadata API, with caching.

HTTP request/response parser for python in C

A lightweight suffix-sorting library

Guides and reference material for the Workflow Description Language.

Binder, tool for automatic generation of Python bindings

Protocol Buffers - Google's data interchange format

GBWT-based handle graph

UCSC Genome Browser source tree. Stable branch: "beta".

Current options to index, represent, and visualize annotations in a pangenome with the vg toolkit

v2.x of the microassembly based somatic variant caller

Karabiner-Elements is a powerful utility for keyboard customization on macOS Sierra (10.12) or later.

Prefix Free Parsing

Prototype for an immutable pangenome graph in SQLite

Simple succinct data structures (in Rust)

Small C/CLI library of pairwise alignment format (paf) format tools used by Cactus

A beautiful stack trace pretty printer for C++

🍻 Default formulae for the missing package manager for macOS (or Linux)

Python implementation of stream library for streaming google protocol buffer objects

WDL’s and Dockerfiles for assembly QC process