hlaAttrBagClass.Rd

\name{hlaAttrBagClass}
\alias{hlaAttrBagClass}
\title{The class of HIBAG model}
\description{
    The class of a HIBAG model, and its instance is returned from
\code{\link{hlaAttrBagging}}.
}
\value{
    Return a list of:
    \item{n.samp}{the total number of training samples}
    \item{n.snp}{the total number of candidate SNP predictors}
    \item{sample.id}{the sample IDs}
    \item{snp.id}{the SNP IDs}
    \item{snp.position}{SNP position in basepair}
    \item{snp.allele}{a vector of characters with the format of
        ``A allele/B allele''}
    \item{snp.allele.freq}{the allele frequencies}
    \item{hla.locus}{the name of HLA locus}
    \item{hla.allele}{the HLA alleles used in the model}
    \item{hla.freq}{the HLA allele frequencies}
    \item{assembly}{the human genome reference, such like "hg19"}
    \item{model}{internal use}
    \item{appendix}{an optional list:
        \code{platform} -- supported platform(s);
        \code{information} -- other information, like training sets, authors;
        \code{warning} -- any warning message}
    \item{matching}{matching proportion in the training set}
}

\author{Xiuwen Zheng}
\seealso{
    \code{\link{hlaAttrBagging}}, \code{\link{hlaParallelAttrBagging}},
    \code{\link{hlaAttrBagObj}}
}

\keyword{HLA}
\keyword{genetics}