-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathSynergyScreen-accessors.Rd
142 lines (101 loc) · 3.65 KB
/
SynergyScreen-accessors.Rd
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/SynergyScreen-accessors.R
\docType{methods}
\name{SynergyScreen-accessors}
\alias{SynergyScreen-accessors}
\alias{compound}
\alias{compound,SynergyScreen-method}
\alias{compound_list}
\alias{compound_list,SynergyScreen-method}
\alias{compound_list<-}
\alias{compound_list<-,SynergyScreen-method}
\alias{design,SynergyScreen-method}
\alias{design<-,SynergyScreen-method}
\alias{dre}
\alias{dre,SynergyScreen-method}
\alias{dre_list}
\alias{dre_list,SynergyScreen-method}
\alias{dre_list<-}
\alias{dre_list<-,SynergyScreen-method}
\alias{norm_data}
\alias{norm_data,SynergyScreen-method}
\alias{norm_data<-}
\alias{norm_data<-,SynergyScreen-method}
\alias{raw_data}
\alias{raw_data,SynergyScreen-method}
\alias{raw_data<-}
\alias{raw_data<-,SynergyScreen-method}
\alias{synergy_data}
\alias{synergy_data,SynergyScreen-method}
\alias{synergy_data<-}
\alias{synergy_data<-,SynergyScreen-method}
\alias{synergy_experiment}
\alias{synergy_experiment,SynergyScreen-method}
\alias{synergy_experiment_list}
\alias{synergy_experiment_list,SynergyScreen-method}
\alias{synergy_experiment_list<-}
\alias{synergy_experiment_list<-,SynergyScreen-method}
\title{Accessor methods for class SynergyScreen}
\usage{
norm_data(object)
norm_data(object) <- value
raw_data(object)
raw_data(object) <- value
synergy_data(object)
synergy_data(object) <- value
compound_list(object)
compound_list(object) <- value
compound(object, name)
dre_list(object)
dre_list(object) <- value
dre(object, name)
synergy_experiment_list(object)
synergy_experiment_list(object) <- value
synergy_experiment(object, name)
\S4method{design}{SynergyScreen}(object)
\S4method{design}{SynergyScreen}(object) <- value
\S4method{norm_data}{SynergyScreen}(object)
\S4method{norm_data}{SynergyScreen}(object) <- value
\S4method{raw_data}{SynergyScreen}(object)
\S4method{raw_data}{SynergyScreen}(object) <- value
\S4method{synergy_data}{SynergyScreen}(object)
\S4method{synergy_data}{SynergyScreen}(object) <- value
\S4method{compound_list}{SynergyScreen}(object)
\S4method{compound_list}{SynergyScreen}(object) <- value
\S4method{compound}{SynergyScreen}(object, name)
\S4method{dre_list}{SynergyScreen}(object)
\S4method{dre_list}{SynergyScreen}(object) <- value
\S4method{dre}{SynergyScreen}(object, name)
\S4method{synergy_experiment_list}{SynergyScreen}(object)
\S4method{synergy_experiment_list}{SynergyScreen}(object) <- value
\S4method{synergy_experiment}{SynergyScreen}(object, name)
}
\arguments{
\item{object}{object of class SynergyScreen}
\item{value}{replacement value for a slot. See Details}
\item{name}{name of a list member to access, e.g. specific dose-response experiment or synergy experiment}
}
\description{
Accessor methods for class SynergyScreen
}
\details{
Details on specific methods
}
\section{Replacement method for @norm_data (norm_data<-)}{
Replacement value for @norm_data can be a \linkS4class{ScreenData} object or a data frame
This method also sets @response and @control.response slots of @dre_list members.
}
\section{Replacement method for @raw_data (raw_data<-)}{
Replacement value for @norm_data can be a \linkS4class{ScreenData} object or a data frame
}
\section{Replacement method for @synergy_data (synergy_data<-)}{
Replacement value for @synergy_data can be a \linkS4class{SynergyData} object or a data frame
}
\examples{
data(sim15_screen3)
head(norm_data(sim15_screen3))
dre(sim15_screen3,"Cpd1")
}
\seealso{
\linkS4class{SynergyScreen}, \link{dreData}, \link{labelledData}
}