Skip to content

Commit 3df76df

Browse files
author
Adam M. Wilson
committed
update tasks
1 parent d7baca5 commit 3df76df

28 files changed

+1256
-47
lines changed

Schedule.md

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -35,7 +35,7 @@ Homeworks are due at 5pm on the Friday of the week specified below.
3535
| 11 | 11/6/18 | | [Project First Draft](./TK_11.html) | - | 9 |
3636
| 12 | 11/13/18 | [<i class='fas fa-desktop'> </i>](presentations/PS_12.html){target='_blank'} | [Project Peer Review](./TK_12.html) | [Dynamic HTML graph of Daily Temperatures](./CS_12.html) | 10 |
3737
| 13 | 11/20/18 | | [Thanksgiving Week (Tuesday Class Optional)](./TK_13.html) | - | |
38-
| 14 | 11/27/18 | | [Building and summarizing models](./TK_14.html) | - | |
38+
| 14 | 11/27/18 | | [Final Project 2nd Draft / Building and summarizing models](./TK_14.html) | - | |
3939
| 15 | 12/4/18 | | [Final Presentation](./TK_15.html) | - | |
40-
| 16 | 12/11/18 | | - | - | |
40+
| 16 | 12/14/18 | | [Publish Final Project](./TK_16.html) | - | |
4141

TK_12.Rmd

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -9,8 +9,8 @@ reading:
99
- Chapter [28 in R4DS](http://r4ds.had.co.nz)
1010
tasks:
1111
- Review at least two other students' projects and make comments via a _pull request_ in GitHub before next class next week.
12-
- Browse the [Leaflet website](http://rstudio.github.io/leaflet/) and take notes in your readme.md about potential uses in your project. What data could you use? How would you display it?
13-
- Browse the [HTML Widgets page](http://gallery.htmlwidgets.org/) for many more examples. Take notes in your readme.md about potential uses in your project.
12+
- Browse the [Leaflet website](http://rstudio.github.io/leaflet/) and take notes in your readme.md about potential uses in your project. What data could you use? How would you display it?
13+
- Browse the [HTML Widgets page](http://gallery.htmlwidgets.org/) for many more examples. Take notes in your readme.md about potential uses in your project.
1414
---
1515

1616
```{r, echo=FALSE, message=FALSE, results='hide', purl=FALSE}

TK_12.md

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -9,8 +9,8 @@ reading:
99
- Chapter [28 in R4DS](http://r4ds.had.co.nz)
1010
tasks:
1111
- Review at least two other students' projects and make comments via a _pull request_ in GitHub before next class next week.
12-
- Browse the [Leaflet website](http://rstudio.github.io/leaflet/) and take notes in your readme.md about potential uses in your project. What data could you use? How would you display it?
13-
- Browse the [HTML Widgets page](http://gallery.htmlwidgets.org/) for many more examples. Take notes in your readme.md about potential uses in your project.
12+
- Browse the [Leaflet website](http://rstudio.github.io/leaflet/) and take notes in your readme.md about potential uses in your project. What data could you use? How would you display it?
13+
- Browse the [HTML Widgets page](http://gallery.htmlwidgets.org/) for many more examples. Take notes in your readme.md about potential uses in your project.
1414
---
1515

1616

TK_14.Rmd

Lines changed: 4 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,11 +1,12 @@
11
---
2-
title: Building and summarizing models
3-
subtitle: Interactive web-based visualizations
2+
title: Final Project 2nd Draft / Building and summarizing models
3+
subtitle: Building a species distribution model
44
week: 14
55
type: Task
66
reading:
77
- Chapter [23-25 in R4DS](http://r4ds.had.co.nz)
88
tasks:
9+
- Commit second draft of final project to GitHub for review
910
- Demonstrate a simple presence/absence model in spatial context.
1011
- Model spatial dependence (autocorrelation) in the response.
1112
---
@@ -25,4 +26,4 @@ md_bullet(rmarkdown::metadata$reading)
2526

2627
# Exercise
2728

28-
Now work through the [exercise illustrated here](13_SDM_Exercise.html). You do not need to upload anything to github.
29+
Work through the [exercise illustrated here](13_SDM_Exercise.html). You do not need to upload anything to github.

TK_14.md

Lines changed: 4 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,11 +1,12 @@
11
---
2-
title: Building and summarizing models
3-
subtitle: Interactive web-based visualizations
2+
title: Final Project 2nd Draft / Building and summarizing models
3+
subtitle: Building a species distribution model
44
week: 14
55
type: Task
66
reading:
77
- Chapter [23-25 in R4DS](http://r4ds.had.co.nz)
88
tasks:
9+
- Commit second draft of final project to GitHub for review
910
- Demonstrate a simple presence/absence model in spatial context.
1011
- Model spatial dependence (autocorrelation) in the response.
1112
---
@@ -31,4 +32,4 @@ tasks:
3132

3233
# Exercise
3334

34-
Now work through the [exercise illustrated here](13_SDM_Exercise.html). You do not need to upload anything to github.
35+
Work through the [exercise illustrated here](13_SDM_Exercise.html). You do not need to upload anything to github.

TK_16.Rmd

Lines changed: 80 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,80 @@
1+
---
2+
title: Publish Final Project
3+
subtitle: Commit the final version of your project
4+
week: 16
5+
type: Task
6+
tasks:
7+
- Finalize your project and commit to GitHub
8+
- Confirm the final version renders correctly on your website
9+
---
10+
11+
```{r, echo=FALSE, message=FALSE, results='hide', purl=FALSE}
12+
source("functions.R")
13+
source("knitr_header.R")
14+
```
15+
16+
# Reading
17+
18+
```{r reading,results='asis',echo=F}
19+
#md_bullet(rmarkdown::metadata$reading)
20+
```
21+
22+
# Tasks
23+
24+
```{r reading,results='asis',echo=F}
25+
md_bullet(rmarkdown::metadata$tasks)
26+
```
27+
28+
## Final Draft
29+
30+
You will have two opportunites to submit your final project and your final grade on the project will be the highest of the two submissions.
31+
32+
The final project will include and be graded as follows:
33+
34+
1. **Title** (<25 words)
35+
2. **Introduction [~ 200 words, 10%]**
36+
* Clearly stated background and questions / hypotheses / problems being addressed. Sets up the analysis in an interesting and compelling way.
37+
3. **Materials and methods [~ 200 words]**
38+
* **Narrative (10%)**: Clear narrative description of the data sources and methods. Includes data from at least two sources that were integrated / merged in R.
39+
* **Code (25%)**: The code associated with the project is well organized and easy to follow. Demonstrates mastery of R graphics and functions.
40+
* **Data (5%)**: The underlying data are publicly accessible via the web and downloaded/accessed within the Rmd script. If you want to use your own data, you must make it available on a website (e.g. [Figshare](figshare.org)) so that others are able to re-run your code.
41+
4. **Results [~200 words, 25%]**
42+
* Tables and figures (maps and other graphics) are carefully planned to convey the results of your analysis. Intense exploration and evidence of many trials and failures. The author looked at the data in many different ways before coming to the final presentation of the data.
43+
5. **Conclusions [~200 words, 5%]**
44+
* Clear summary adequately describing the results and putting them in context. Discussion of further questions and ways to continue investigation.
45+
6. **References [5%]**
46+
* All sources are cited in a consistent manner
47+
7. **General Scores**
48+
* **General organization (10%)**: Clear labels/headings demarcate separate sections. Excellent flow from one section to the next. Tables and graphics carefully tuned and placed for desired purpose.The 'story' is very well organized, makes good use of graphics, and is easy to understand.
49+
* **General Grammar (5%)**: All sentences are well constructed and have varied structure and length. The author makes no errors in grammar, mechanics, and/or spelling.
50+
51+
See the project rubric below for more details and examples.
52+
<a href='assets/rubric.png' target="_blank"> <img src='assets/rubric.png'></a>
53+
54+
Note that the word counts are quite short (~200 words per section). This does not mean it's _easy_! In fact, conveying all the necessary information succinctly requires extra effort. If English is not your first language, you are encouraged to contact the [UB Writing Center](https://www.buffalo.edu/writing.html) to get help writing succinctly and clearly. They schedule 45 minute sessions to go over your writing which can dramatically improve the quality of your project. Plan ahead to schedule this before upcoming deadlines.
55+
56+
The more complete the second draft, the more feedback I'll be able to provide to ensure an excellent final project. So it's in your interest to finish as much as possible. In addition to the details from the first draft, I would like to see drafts of the text and figures/tables/etc in each section.
57+
58+
When submitting your your second draft, you can include any questions or comments in the draft (e.g., "I'm planning to do X, but I'm not sure how to organize the data appropriately") or as a _comment_ in the UBLearns submission webpage. Please do not include these comments in the final submission.
59+
60+
#### Formatting
61+
The final project will be produced as a [RMarkdown Website](http://rmarkdown.rstudio.com/rmarkdown_websites.html) that includes all the steps necessary to run the analysis and produce the output (figures, tables,etc.). For examples of similar documents, explore the [RPubs website](https://rpubs.com).
62+
63+
See the [RMarkdown page](http://rmarkdown.rstudio.com/formats.html) for ideas on different html output designs. In particular, check out the [FlexaDashboard](http://rmarkdown.rstudio.com/flexdashboard/) options if you want to include interactive displays.
64+
65+
#### Figures
66+
Figures (maps and other graphics) are a vital component of scientific communication and you should carefully plan your figures to convey the results of your analysis.
67+
68+
#### References
69+
You should cite any relevant materials (including data sources and methods) in the text using a standard author-date citation format (e.g. Wilson, 2015) and then described in a References section. You can either compile the references manually (e.g. cutting and pasting the citation into the references section) or use the automated system in RMarkdown explained [here](http://rmarkdown.rstudio.com/authoring_bibliographies_and_citations.html). Other citation styles are acceptable as long as they are consistent, complete, and easy to understand.
70+
71+
### Resources
72+
73+
Sites with examples of visual display of quantitative information
74+
75+
* [http://www.informationisbeautiful.net](http://www.informationisbeautiful.net)
76+
* [http://flowingdata.com](http://flowingdata.com)
77+
* [https://visual.ly/m/design-portfolio/](https://visual.ly/m/design-portfolio/)
78+
* [40 Brilliant and Complex Topics Explained Perfectly By Infographics](https://designschool.canva.com/blog/best-infographics/)
79+
* [NY Times Graphics Department](https://twitter.com/nytgraphics)
80+
* [Open Data through R](https://github.com/ropensci/opendata): This Task View contains information about using R to obtain, parse, manipulate, create, and share open data. Much open data is available on the web, and the WebTechnologies TaskView addresses how to obtain and parse web-based data. There is obvious overlap between the two TaskViews, so some packages are described on both. There is also a considerable amount of open data available as R packages on CRAN.

TK_16.md

Lines changed: 74 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,74 @@
1+
---
2+
title: Publish Final Project
3+
subtitle: Commit the final version of your project
4+
week: 16
5+
type: Task
6+
tasks:
7+
- Finalize your project and commit to GitHub
8+
- Confirm the final version renders correctly on your website
9+
---
10+
11+
12+
13+
# Reading
14+
15+
16+
17+
# Tasks
18+
19+
- Finalize your project and commit to GitHub
20+
- Confirm the final version renders correctly on your website
21+
22+
## Final Draft
23+
24+
You will have two opportunites to submit your final project and your final grade on the project will be the highest of the two submissions.
25+
26+
The final project will include and be graded as follows:
27+
28+
1. **Title** (<25 words)
29+
2. **Introduction [~ 200 words, 10%]**
30+
* Clearly stated background and questions / hypotheses / problems being addressed. Sets up the analysis in an interesting and compelling way.
31+
3. **Materials and methods [~ 200 words]**
32+
* **Narrative (10%)**: Clear narrative description of the data sources and methods. Includes data from at least two sources that were integrated / merged in R.
33+
* **Code (25%)**: The code associated with the project is well organized and easy to follow. Demonstrates mastery of R graphics and functions.
34+
* **Data (5%)**: The underlying data are publicly accessible via the web and downloaded/accessed within the Rmd script. If you want to use your own data, you must make it available on a website (e.g. [Figshare](figshare.org)) so that others are able to re-run your code.
35+
4. **Results [~200 words, 25%]**
36+
* Tables and figures (maps and other graphics) are carefully planned to convey the results of your analysis. Intense exploration and evidence of many trials and failures. The author looked at the data in many different ways before coming to the final presentation of the data.
37+
5. **Conclusions [~200 words, 5%]**
38+
* Clear summary adequately describing the results and putting them in context. Discussion of further questions and ways to continue investigation.
39+
6. **References [5%]**
40+
* All sources are cited in a consistent manner
41+
7. **General Scores**
42+
* **General organization (10%)**: Clear labels/headings demarcate separate sections. Excellent flow from one section to the next. Tables and graphics carefully tuned and placed for desired purpose.The 'story' is very well organized, makes good use of graphics, and is easy to understand.
43+
* **General Grammar (5%)**: All sentences are well constructed and have varied structure and length. The author makes no errors in grammar, mechanics, and/or spelling.
44+
45+
See the project rubric below for more details and examples.
46+
<a href='assets/rubric.png' target="_blank"> <img src='assets/rubric.png'></a>
47+
48+
Note that the word counts are quite short (~200 words per section). This does not mean it's _easy_! In fact, conveying all the necessary information succinctly requires extra effort. If English is not your first language, you are encouraged to contact the [UB Writing Center](https://www.buffalo.edu/writing.html) to get help writing succinctly and clearly. They schedule 45 minute sessions to go over your writing which can dramatically improve the quality of your project. Plan ahead to schedule this before upcoming deadlines.
49+
50+
The more complete the second draft, the more feedback I'll be able to provide to ensure an excellent final project. So it's in your interest to finish as much as possible. In addition to the details from the first draft, I would like to see drafts of the text and figures/tables/etc in each section.
51+
52+
When submitting your your second draft, you can include any questions or comments in the draft (e.g., "I'm planning to do X, but I'm not sure how to organize the data appropriately") or as a _comment_ in the UBLearns submission webpage. Please do not include these comments in the final submission.
53+
54+
#### Formatting
55+
The final project will be produced as a [RMarkdown Website](http://rmarkdown.rstudio.com/rmarkdown_websites.html) that includes all the steps necessary to run the analysis and produce the output (figures, tables,etc.). For examples of similar documents, explore the [RPubs website](https://rpubs.com).
56+
57+
See the [RMarkdown page](http://rmarkdown.rstudio.com/formats.html) for ideas on different html output designs. In particular, check out the [FlexaDashboard](http://rmarkdown.rstudio.com/flexdashboard/) options if you want to include interactive displays.
58+
59+
#### Figures
60+
Figures (maps and other graphics) are a vital component of scientific communication and you should carefully plan your figures to convey the results of your analysis.
61+
62+
#### References
63+
You should cite any relevant materials (including data sources and methods) in the text using a standard author-date citation format (e.g. Wilson, 2015) and then described in a References section. You can either compile the references manually (e.g. cutting and pasting the citation into the references section) or use the automated system in RMarkdown explained [here](http://rmarkdown.rstudio.com/authoring_bibliographies_and_citations.html). Other citation styles are acceptable as long as they are consistent, complete, and easy to understand.
64+
65+
### Resources
66+
67+
Sites with examples of visual display of quantitative information
68+
69+
* [http://www.informationisbeautiful.net](http://www.informationisbeautiful.net)
70+
* [http://flowingdata.com](http://flowingdata.com)
71+
* [https://visual.ly/m/design-portfolio/](https://visual.ly/m/design-portfolio/)
72+
* [40 Brilliant and Complex Topics Explained Perfectly By Infographics](https://designschool.canva.com/blog/best-infographics/)
73+
* [NY Times Graphics Department](https://twitter.com/nytgraphics)
74+
* [Open Data through R](https://github.com/ropensci/opendata): This Task View contains information about using R to obtain, parse, manipulate, create, and share open data. Much open data is available on the web, and the WebTechnologies TaskView addresses how to obtain and parse web-based data. There is obvious overlap between the two TaskViews, so some packages are described on both. There is also a considerable amount of open data available as R packages on CRAN.

Tasklist.md

Lines changed: 20 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -335,7 +335,9 @@ ___
335335
- Chapter [28 in R4DS](http://r4ds.had.co.nz)
336336

337337
## Tasks
338-
- Review at least two other students' projects and make comments via a _pull request_ in GitHub before next class next week. - Browse the [Leaflet website](http://rstudio.github.io/leaflet/) and take notes in your readme.md about potential uses in your project. What data could you use? How would you display it? - Browse the [HTML Widgets page](http://gallery.htmlwidgets.org/) for many more examples. Take notes in your readme.md about potential uses in your project.
338+
- Review at least two other students' projects and make comments via a _pull request_ in GitHub before next class next week.
339+
- Browse the [Leaflet website](http://rstudio.github.io/leaflet/) and take notes in your readme.md about potential uses in your project. What data could you use? How would you display it?
340+
- Browse the [HTML Widgets page](http://gallery.htmlwidgets.org/) for many more examples. Take notes in your readme.md about potential uses in your project.
339341
</div>
340342
___
341343
## [ TK_13 : Thanksgiving Week (Tuesday Class Optional) ]( ./TK_13.html )
@@ -352,16 +354,17 @@ ___
352354
- Come to class with any questions
353355
</div>
354356
___
355-
## [ TK_14 : Building and summarizing models ]( ./TK_14.html )
357+
## [ TK_14 : Final Project 2nd Draft / Building and summarizing models ]( ./TK_14.html )
356358

357359

358-
Interactive web-based visualizations
360+
Building a species distribution model
359361

360362
<a class="btn btn-link" href="./TK_14.html" role="button" >Full Description</a><button data-toggle="collapse" class="btn btn-link" data-target="#i22">Preview Readings & Tasks </button><div id="i22" class="collapse">
361363
## Readings
362364
- Chapter [23-25 in R4DS](http://r4ds.had.co.nz)
363365

364366
## Tasks
367+
- Commit second draft of final project to GitHub for review
365368
- Demonstrate a simple presence/absence model in spatial context.
366369
- Model spatial dependence (autocorrelation) in the response.
367370
</div>
@@ -382,4 +385,18 @@ ___
382385
- Get feedback from 2-3 fellow classmates on your presentation and update it based on their feedback
383386
- Give your 5 minute presentation in class
384387
</div>
388+
___
389+
## [ TK_16 : Publish Final Project ]( ./TK_16.html )
390+
391+
392+
Commit the final version of your project
393+
394+
<a class="btn btn-link" href="./TK_16.html" role="button" >Full Description</a><button data-toggle="collapse" class="btn btn-link" data-target="#i24">Preview Readings & Tasks </button><div id="i24" class="collapse">
395+
## Readings
396+
-
397+
398+
## Tasks
399+
- Finalize your project and commit to GitHub
400+
- Confirm the final version renders correctly on your website
401+
</div>
385402

0 commit comments

Comments
 (0)