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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(adjust_counts,default)
S3method(adjust_counts,tbl_df)
S3method(aggregate_duplicates,default)
S3method(aggregate_duplicates,tbl_df)
S3method(annotate_cell_type,default)
S3method(annotate_cell_type,tbl_df)
S3method(annotate_clusters,default)
S3method(annotate_clusters,tbl_df)
S3method(annotate_differential_transcription,default)
S3method(annotate_differential_transcription,tbl_df)
S3method(annotate_symbol,default)
S3method(annotate_symbol,tbl_df)
S3method(create_ttBulk,default)
S3method(create_ttBulk,tbl_df)
S3method(drop_redundant,default)
S3method(drop_redundant,tbl_df)
S3method(normalise_counts,default)
S3method(normalise_counts,tbl_df)
S3method(reduce_dimensions,default)
S3method(reduce_dimensions,tbl_df)
S3method(rotate_dimensions,default)
S3method(rotate_dimensions,tbl_df)
export(add_adjusted_counts_for_unwanted_variation_bulk)
export(add_cell_type_proportions)
export(add_clusters_kmeans_bulk)
export(add_differential_transcript_abundance_bulk)
export(add_normalised_counts_bulk)
export(add_reduced_dimensions_MDS_bulk)
export(add_reduced_dimensions_PCA_bulk)
export(add_rotated_dimensions)
export(add_symbol_from_ensembl)
export(adjust_counts)
export(aggregate_duplicated_transcripts_bulk)
export(aggregate_duplicates)
export(annotate_cell_type)
export(annotate_clusters)
export(annotate_differential_transcription)
export(annotate_symbol)
export(as_matrix)
export(create_ttBulk)
export(create_tt_from_bam_sam_bulk)
export(create_tt_from_tibble_bulk)
export(drop_redundant)
export(drop_redundant_elements_though_reduced_dimensions)
export(drop_redundant_elements_through_correlation)
export(get_adjusted_counts_for_unwanted_variation_bulk)
export(get_cell_type_proportions)
export(get_clusters_kmeans_bulk)
export(get_differential_transcript_abundance_bulk)
export(get_normalised_counts_bulk)
export(get_reduced_dimensions_MDS_bulk)
export(get_reduced_dimensions_PCA_bulk)
export(get_rotated_dimensions)
export(get_symbol_from_ensembl)
export(normalise_counts)
export(reduce_dimensions)
export(rotate_dimensions)
import(dplyr)
import(parallel)
import(tibble)
import(tidyr)
importFrom(dplyr,bind_rows)
importFrom(dplyr,summarise_all)
importFrom(magrittr,equals)
importFrom(magrittr,set_colnames)
importFrom(magrittr,set_rownames)
importFrom(parallel,mclapply)
importFrom(purrr,as_mapper)
importFrom(purrr,map_dfr)
importFrom(rlang,quo_is_null)
importFrom(rlang,quo_is_symbol)
importFrom(stats,kmeans)
importFrom(widyr,pairwise_cor)