Merge pull request #20799 from easybuilders/4.9.x

release EasyBuild v4.9.2

Author: migueldiascosta

RELEASE_NOTES

@@ -3,10 +3,130 @@ For more detailed information, please see the git log.
 
 These release notes can also be consulted at https://docs.easybuild.io/en/latest/Release_notes.html.
 
-The latest version of easybuild-easyconfig provides 19,487 easyconfig files, for 3,470 different software packages,
+The latest version of easybuild-easyconfig provides 19,985 easyconfig files, for 3,552 different software packages,
 incl. 40 different (compiler) toolchains.
 
 
+v4.9.2 (12 June 2024)
+---------------------
+
+update/bugfix release
+
+- added easyconfigs for foss/2024.05 toolchain (candidate for foss/2024a) (#20646)
+- added example easyconfig files for 82 new software packages:
+  - AEDT (#20357), amdahl (#20346), AMGX (#20255), assembly-stats (#20281), Bio-FeatureIO (#20461),
+    bitshuffle (#20661), Cassiopeia (#20289), CCCL (#20255), charm-gems (#20327), CheckM2 (#20399),
+    chromVARmotifs (#20402), cmph (#20278), COMEBin (#20717), Compass (#20500), ctffind5 (#20669), currentNe (#20791),
+    CVX (#20231), deepfold (#20247), dotNET-Core (#20256), EasyMocap (#20446), ensmallen (#20485), EVcouplings (#20744),
+    Faiss (#19669), FDMNES (#20321), gnupg-bundle (#20406), grpcio (#20191), hatch-jupyter-builder (#20606),
+    hevea (#20597), HiGHS (#20186), hmmcopy_utils (#20472), HOMER (#20590), ICON (#20573), jiter (#20746),
+    LangChain (#20746), langchain-anthropic (#20746), libabigail (#20539), libbraiding (#20655), libhomfly (#20482),
+    libsupermesh (#20470), LIBSVM-MATLAB (#20752), Lightning (#19964), lil-aretomo (#20696), makefun (#20619),
+    MetalWalls (#20403), MICOM (#20186), ml-collections (#20247), ml_dtypes (#20707), mlpack (#20485), MOFA2 (#20538),
+    mumott (#20719), nvitop (#20512), ocamlbuild (#20552), optiSLang (#20320), orthAgogue (#20278), pdf2docx (#20416),
+    planarity (#20753), plantri (#20467), plmc (#20744), PortAudio (#20307), premailer (#20348), ProteinMPNN (#20705),
+    PRRTE (#20698), PSM2 (#20496), PyAEDT (#20357), pybind11-stubgen (#20518), PyEXR (#19983), pyGAM (#20385),
+    PyHMMER (#20544), pyseer (#20502), PyVista (#20649), qmflows (#20384), SciTools-Iris (#20767), SCReadCounts (#20455),
+    SDL2_gfx (#20466), subunit (#20412), TF-COMB (#20666), tiktoken (#20336), TorchIO (#20648), t-SNE-CUDA (#19669),
+    VAMPIRE-ASM (#20368), wfdb (#20521), WGDgc (#20367)
+- added additional easyconfigs for various supported software packages, including:
+  - 4ti2 1.6.10, AFNI 24.0.02, Autoconf 2.72, Autotools 20231222, adjustText 1.1.1, aiohttp 3.9.5, alevin-fry 0.9.0,
+    alsa-lib 1.2.9, atropos 1.1.32, autopep8 2.2.0, BCFtools 1.19, BLIS 1.0, BWA 0.7.18, Boost 1.85.0, bcrypt 4.1.3,
+    binutils 2.42, bokeh 3.4.1, CGAL 5.6.1, CREST 3.0.1, CellRanger-ARC 2.0.2, CellRanger 8.0.1, CellRank 2.0.2,
+    Clang 17.0.6, CoCoALib 0.99850, Cython 3.0.10, cURL 8.7.1, cffi 1.16.0, code-server 4.89.1,
+    configurable-http-proxy 4.6.1, coverage 7.4.4, cpio 2.15, cppyy 3.1.2, cysignals 1.11.4, Doxygen 1.11.0,
+    dask-labextension 7.0.0, dask 2024.5.1, deal.II 9.5.2, dorado 0.5.3, dotNET-Core 8.0.203, E-ANTIC 2.0.2,
+    ECL 24.5.10, ESPResSo 4.2.2, eclib 20240408, expat 2.6.2, FLTK 1.3.9, FMM3D 1.0.4, FlexiBLAS 3.4.4, f90wrap 0.2.13,
+    fgbio 2.2.1, fontconfig 2.15.0, freetype-py 2.4.0, GAMESS-US 20220930-R2 + 20230930-R2, GCC 13.3.0 + 14.1.0,
+    GDB 14.2, GDRCopy 2.4.1, GOATOOLS 1.4.5, GTDB-Tk 2.4.0, Giza 1.4.1, gc 8.2.6, gcloud 472.0.0, gemmi 0.6.5,
+    gettext 0.22.5, giac 1.9.0-99, git 2.45.1, gmsh 4.12.2, gsutil 5.29, HDDM 0.9.9, HTSlib 1.19.1, HyPhy 2.5.60,
+    h5py 3.11.0, hwloc 2.10.0, ICU 75.1, IOR 4.0.0, imagecodecs 2024.1.1, imgaug 0.4.1, ipympl 0.9.4,
+    Jupyter-bundle 20240522, JupyterHub 4.1.5, JupyterLab 4.2.0, JupyterNotebook 7.2.0, jupyter-matlab-proxy 0.12.2,
+    jupyter-resource-usage 1.0.2, jupyter-rsession-proxy 2.2.0, jupyter-server-proxy 4.1.2, jupyter-server 2.14.0,
+    Kalign 3.4.0, KrakenUniq 1.0.4, kallisto 0.50.1, LAPACK 3.12.0, libarchive 3.7.4, libde265 1.0.15, libdeflate 1.20,
+    libdwarf 0.9.2, libfabric 1.21.0, libffi 3.4.5, libgcrypt 1.10.3, libgpg-error 1.48, libheif 1.17.6, libidn2 2.3.7,
+    libnsl 2.0.1, libpciaccess 0.18.1, libpng 1.6.43, libuv 1.48.0, libxml2 2.12.7, line_profiler 4.1.2, MATSim 15.0,
+    MDTraj 1.9.9, Mako 1.3.5, Meson 1.4.0, MetaMorpheus 1.0.5, Molpro 2024.1.0, MuJoCo 3.1.4, matlab-proxy 0.18.1,
+    mold 2.31.0, mpmath 1.3.0, NASM 2.16.03, NanoPlot 1.42.0, Nextflow 24.04.2, Ninja 1.12.1, nanoget 1.19.1,
+    napari 0.4.19.post1, nauty 2.8.8, ncurses 6.5, nghttp2 1.58.0, nghttp3 1.3.0, nglview 3.1.2, ngtcp2 1.2.0,
+    nodejs 20.13.1, numactl 2.0.18, nvtop 3.1.0, OCaml 5.1.1, OSU-Micro-Benchmarks 7.4, OpenBLAS 0.3.27, OpenMPI 5.0.3,
+    PARI-GP 2.15.5, PCRE2 10.43, PMIx 5.0.2, Perl 5.38.2, PhyML 3.3.20220408, PnetCDF 1.13.0, PyAMG 5.1.0,
+    PyQtGraph 0.13.7, PyTorch-Geometric 2.5.0, PyTorch-bundle 2.1.2, PycURL 7.45.3, Pysam 0.22.0, Python 3.12.3,
+    p11-kit 0.25.3, p4est 2.8.6, parallel 20240322, pauvre 0.2.3, petsc4py 3.20.3, pkgconf 2.2.0, plc 3.10, polars 0.20.2,
+    poppler 24.04.0, psutil 5.9.8, py3Dmol 2.1.0, pybedtools 0.9.1, pygame 2.5.2, pyiron 0.5.1, pyro-ppl 1.9.0,
+    python-mujoco 3.1.4, ROOT 6.30.06, RPostgreSQL 0.7-6, RStudio-Server 2023.12.1+402, Rtree 1.2.0, Rust 1.78.0,
+    SAMtools 1.19.2, SCOTCH 7.0.4, SDL2_image 2.8.2, SDL2_mixer 2.8.0, SDL2_ttf 2.22.0, SQLite 3.45.3, SWIG 4.2.1,
+    SentencePiece 0.2.0, Seurat 5.1.0, SeuratDisk 20231104, SimNIBS 4.0.1, Singular 4.4.0, Spack 0.21.2, Squidpy 1.4.1,
+    SymEngine-python 0.11.0, SymEngine 0.11.2, sbt 1.6.2, scikit-build-core 0.9.3, scikit-learn 1.4.2, TOBIAS 0.16.1,
+    Tcl 8.6.14, TensorFlow 2.15.1, Transformers 4.39.3, texlive 20230313, tmux 3.4, tokenizers 0.15.2, 0.2.5.20231120,
+    tornado 6.4, UCC 1.3.0, UCX 1.16.0, util-linux 2.40, VSCode 1.88.1, Valgrind 3.23.0, VisPy 0.14.1, wget 1.24.5,
+    XZ 5.4.5, xorg-macros 1.20.1, xprop 1.2.7, xtb 6.7.0, xxd 9.1.0307, yaml-cpp 0.8.0, zarr 2.17.1, zfp 1.0.1,
+    zlib-ng 2.1.6, zlib 1.3.1, zstd 1.5.6
+- minor enhancements, including:
+  - add missing (optional) dependency pyproject-metadata to scikit-build-core (#20391)
+  - add hatch-requirements-txt extension to hatchling easyconfigs (#20389)
+  - install pkg-config files for ncurses 6.4 when using GCCcore toolchain (#20405)
+  - use regular 'configure' instead of wrapper script for recent UCX easyconfigs (#20428)
+  - add RISC-V support to UCX 1.15.0 (#20429), UCC 1.2.0 (#20432), BLIS 0.9.0 (#20468), PAPI 7.1.0 (20659)
+  - add extensions to R-bundle-CRAN v2023.12: cmna (#20445), rhandsontable (#20614), XBRL (#20506)
+  - add checksum for RISC-V version to easyconfig for Java 21.0.2 (#20495)
+  - remove 'TORCHVISION_INCLUDE' from PyTorch-bundle easyconfigs, now handled by custom easyblock for torchvision (#20504)
+  - add dependencies required for GUI in Cellpose 2.2.2 easyconfigs (#20620)
+  - add 'build_info_msg' about kernel modules to GDRCopy (#20641)
+  - build both static and shared libs for Brotli 1.1.0 (#20757)
+- various bug fixes, including:
+  - add missing dependencies for funannotate (#17690)
+  - fix path to SuiteSparse include/lib in easyconfig for CVXopt v1.3.1 (#20232)
+  - fix Highway 1.0.3 on some systems by disabling 'AVX3_DL' (#20298)
+  - replace incorrect scikit-bio 0.5.9 with scikit-bio 0.6.0 as dependency for scCODA (#20300)
+  - add alternate checksum to OpenMolcas v23.06 (#20301)
+  - change arrow-R dependency of Bioconductor v3.18 to v14.0.1 (which depends on required matching Arrow v14.0.1) (#20324)
+  - fix hardcoded '/bin/mv' path in Rhdf5lib extension included in R-bundle-Bioconductor v3.16 + v3.18 (#20378)
+  - remove dependency on HDF5 in recent Bioconductor easyconfigs (#20379)
+  - make sure that libjpeg-turbo libraries are installed in 'lib' subdirectory (#20386)
+  - add patch for Libint 2.7.2 to fix compiler error with glibc >= 2.34 (#20396)
+  - use 'bash' rather than 'sh' to run PLINK-2.00a3.7 tests (#20404)
+  - add patch to fix 'UNPACK-OPAL-VALUE: UNSUPPORTED TYPE 33 FOR KEY' error in OpenMPI 4.1.5 (#20422)
+  - add patch to increase compatibility with AVX512 platforms for bwa-mem2 v2.2.1 (#20434)
+  - add patch for GROMACS 2024.1 to fix filesystem race in tests (#20439)
+  - demote poetry to build dependency for nanocompore (#20453)
+  - add patch to fix CVE-2024-27322 in R v3.6.x (#20464), v4.0.x (#20463), and v4.1.x + v4.2.x + v4.3.x (#20462)
+  - disable test that fetches from the web for torchtext extension in PyTorch-bundle v2.1.2 (#20484)
+  - fix sanity check paths for JupyterLab 4.0.5 (#20514)
+  - fix detection of CC/CXX compilers for 'wmake' in OpenFOAM v2306 + v2312 (#20517)
+  - use the included gmxapi for GROMACS 2024.1 (#20522)
+  - add new checksum for signal_1.8-0 to R-bundle-CRAN-2023.12 (#20527)
+  - fix test in Cwd extension of Perl-bundle-CPAN 5.36.1 (#20536)
+  - fix patch name in easyconfig for Perl-bundle-CPAN 5.36.1 + add also use it for Perl-bundle-CPAN 5.38.0 (#20540)
+  - fix cwd_enoent test in Perl (#20541)
+  - move dependency on BeasutifulSoup in IPython v8.14.0 to jupyter-server (#20547)
+  - remove dependency on BeasutifulSoup from IPython v8.17.2 (#20548)
+  - add alternative checksum for source tarball of MONAI 1.3.0 (#20618)
+  - add cpio as build dependency to recent BLAST+ versions (#20674)
+  - add --disable-htmlpages to recent FFmpeg easyconfigs (#20686)
+  - remove duplicate crates from easyconfig for timm-0.9.7 (#20687)
+  - add missing HDF5 dependency in recent Armadillo easyconfigs (>= 11.4.3) (#20710)
+  - add patches for failing LAPACK tests and RISC-V test segfaults to OpenBLAS 0.3.27 (#20745)
+  - move all easyconfigs for libavif to GCCcore toolchain + fix dependencies (#20747)
+  - make sure mummerplot can use gnuplot if available for recent MUMmer (#20749)
+  - prevent configure script of recent BLAST+ versions from prepending system paths to $PATH (#20751)
+  - fix fastparquet v2023.4.0 using CargoPythonBundle easyblock (#20775)
+  - remove --with-64 from configopts for recent BLAST+ versions (#20784)
+  - add patch to fix build of pdsh 2.34 with Slurm 23.x (#20795)
+- other changes:
+  - move 'build' from extensions to dependencies in easyconfig for napari 0.4.18 (#20433)
+  - update version of fsspec extension in easyconfig for Squidpy 1.4.1 to be compatible with s3fs provided via PyTorch-bundle (#20477)
+  - add commented out PSM2 dependency, relevant for x86_64 systems with OmniPath, to recent libfabric easyconfigs (#20501, #20585, #20794)
+  - replace SQLAlchemy extension with regular dependency in easyconfig for Optuna v3.5.0 (#20510)
+  - replace SQLAlchemy extension in JupyterHub v4.0.2 easyconfig with regular dependency (#20511)
+  - bump Cython to v3.0.8 in Cartopy v0.22.0 easyconfig for foss/2023a toolchain, to avoid dependency version conflict with sckit-learn v1.4.2, which requires Cython >= v3.0.8 (#20525)
+  - change dependency on hatchling of BeautifulSoup v4.12.2 to a build dependency (#20546)
+  - bump async-timeout to 4.0.3 in aiohttp 3.8.5 (#20553)
+  - stick to gfbf/2023a as toolchain for ipympl v0.9.3 (#20586)
+  - rename tornado-timeouts.patch to tornado-6.1_increase-default-timeouts.patch + add missing authorship (#20587)
+  - remove easyconfigs for CellBender v0.3.1, since this version has been redacted due to a serious bug (#20722)
+
+
 v4.9.1 (5 April 2024)
 ---------------------
 

easybuild/easyconfigs/0/4ti2/4ti2-1.6.10-GCC-13.2.0.eb

@@ -0,0 +1,30 @@
+easyblock = 'ConfigureMake'
+
+name = '4ti2'
+version = '1.6.10'
+
+homepage = 'https://4ti2.github.io/'
+description = """A software package for algebraic, geometric and combinatorial problems on linear spaces"""
+
+toolchain = {'name': 'GCC', 'version': '13.2.0'}
+
+github_account = '4ti2'
+source_urls = [GITHUB_SOURCE]
+sources = ['Release_%s.tar.gz' % '_'.join(version.split('.'))]
+checksums = ['2f1bce3203da65b651d68cbd0ace0f89a16d1f436cf5f24e22bc15ec22df936a']
+
+dependencies = [
+    ('GMP', '6.3.0'),
+    ('GLPK', '5.0'),
+]
+
+builddependencies = [('Autotools', '20220317')]
+
+preconfigopts = './autogen.sh && '
+
+sanity_check_paths = {
+    'files': ['bin/%s' % x for x in ['4ti2gmp', '4ti2int32', '4ti2int64']],
+    'dirs': ['include/4ti2', 'lib', 'share']
+}
+
+moduleclass = 'math'

easybuild/easyconfigs/a/AEDT/AEDT-2024R1.eb

@@ -0,0 +1,16 @@
+name = 'AEDT'
+version = '2024R1'
+
+homepage = 'https://www.ansys.com/products/electronics'
+description = """The Ansys Electronics Desktop (AEDT) is a platform that enables
+true electronics system design. AEDT provides access to the Ansys gold-standard
+electromagnetics simulation solutions such as Ansys HFSS, Ansys Maxwell, Ansys Q3D
+Extractor, Ansys SIwave, and Ansys Icepak using electrical CAD (ECAD) and mechanical
+CAD (MCAD) workflows."""
+
+toolchain = SYSTEM
+
+sources = ['ELECTRONICS_%(version)s_LINX64.tgz']
+checksums = ['7b131adf981ebca1e2f4fe8e607e50323167b69e77180a0ab61b2759d57abca5']
+
+moduleclass = 'phys'

easybuild/easyconfigs/a/AFNI/AFNI-24.0.02-foss-2023a.eb

@@ -0,0 +1,67 @@
+# Updated to version 24.0.02 
+# Author: J. Sassmannshausen (Imperial College London/UK)
+
+easyblock = 'CMakeMake'
+
+name = 'AFNI'
+version = '24.0.02'
+
+homepage = 'http://afni.nimh.nih.gov/'
+description = """AFNI is a set of C programs for processing, analyzing, and displaying functional MRI (FMRI) data -
+ a technique for mapping human brain activity."""
+
+toolchain = {'name': 'foss', 'version': '2023a'}
+toolchainopts = {'openmp': True, 'pic': True}
+
+source_urls = ['https://github.com/afni/afni/archive/']
+sources = ['AFNI_%(version)s.tar.gz']
+checksums = ['2915ed5bf98712abe3373bfc285f946fdee6cf1367e23ba80575dd6eedb3529a']
+
+builddependencies = [
+    ('CMake', '3.26.3'),
+]
+
+dependencies = [
+    ('tcsh', '6.24.10'),
+    ('Python', '3.11.3'),
+    ('X11', '20230603'),
+    ('motif', '2.3.8'),
+    ('R', '4.3.2'),
+    ('PyQt5', '5.15.10'),
+    ('expat', '2.5.0'),
+    ('libpng', '1.6.39'),
+    ('libjpeg-turbo', '2.1.5.1'),
+    ('GSL', '2.7'),
+    ('GLib', '2.77.1'),
+    ('zlib', '1.2.13'),
+    ('freeglut', '3.4.0'),
+    ('Pillow', '10.0.0'),
+    ('matplotlib', '3.7.2'),
+    ('SciPy-bundle', '2023.07'),
+    ('Xvfb', '21.1.8'),
+    ('FFmpeg', '6.0'),  # required for running the program
+]
+
+# Make sure stuff does not get installed in .local
+configopts = '-DSTANDARD_PYTHON_INSTALL=OFF '
+
+# Changing permissions of some files
+postinstallcmds = ['chmod a+x %(installdir)s/bin/afni_system_check.py ;']
+postinstallcmds += ['chmod a+x %(installdir)s/bin/uber_subject.py ; ']
+postinstallcmds += ['chmod a+x %(installdir)s/bin/init_user_dotfiles.py ; ']
+# Copying apparently missing files over
+postinstallcmds += ['cp -f %(start_dir)s/src/discoraj/ClusterExplorer/ClustExp_HistTable.py %(installdir)s/bin ; ']
+postinstallcmds += ['cp -f %(start_dir)s/src/discoraj/ClusterExplorer/ClustExp_StatParse.py %(installdir)s/bin ; ']
+postinstallcmds += ['cp -rf %(start_dir)s/src/scripts_for_r %(installdir)s/bin ; ']
+postinstallcmds += ['cp -rf %(start_dir)s/src/R_scripts %(installdir)s/bin/scripts_for_r ; ']
+
+sanity_check_commands = ["afni -help"]
+
+sanity_check_paths = {
+    'files': ['bin/afni', 'lib/libgts.%s' % SHLIB_EXT, 'lib/libnifti2.%s' % SHLIB_EXT],
+    'dirs': ['include', 'share'],
+}
+
+modextrapaths = {'PATH': ['bin/scripts_for_r']}
+
+moduleclass = 'bio'

easybuild/easyconfigs/a/AMGX/AMGX-2.4.0-foss-2023a-CUDA-12.1.1.eb

@@ -0,0 +1,114 @@
+easyblock = 'CMakeMake'
+
+name = 'AMGX'
+version = '2.4.0'
+versionsuffix = '-CUDA-%(cudaver)s'
+
+homepage = 'https://github.com/NVIDIA/AMGX'
+
+description = """Distributed multigrid linear solver library on GPU"""
+toolchain = {'name': 'foss', 'version': '2023a'}
+toolchainopts = {'openmp': True}
+
+github_account = 'NVIDIA'
+source_urls = [GITHUB_SOURCE]
+sources = ['v%(version)s.tar.gz']
+patches = [
+    'AMGX-%(version)s_external-thrust.patch',
+    'AMGX-%(version)s_fix-openmp-linking.patch',
+]
+checksums = [
+    {'v2.4.0.tar.gz': 'b030b8c2e58c4c9987444e5d28fd61e1c5dcd65d484a290d6a18ae0bc5c0e9db'},
+    {'AMGX-2.4.0_external-thrust.patch': '90e4be09615a26bd7ebce68ced63d9d3b52141f7b480e8cedb17b05003656e16'},
+    {'AMGX-2.4.0_fix-openmp-linking.patch': '10046d5d9fff48cb4902797525d43963855c4834f262bdc3c341bbc2cb1f6f76'},
+]
+
+builddependencies = [
+    ('CMake', '3.26.3'),
+]
+
+dependencies = [
+    ('CUDA', '12.1.1', '', SYSTEM),
+    ('UCX-CUDA', '1.14.1', versionsuffix),
+    ('magma', '2.7.2', versionsuffix),
+    ('CCCL', '2.3.0', versionsuffix),
+]
+
+cuda_compute_capabilities = ['7.0', '8.0', '9.0']  # AMGX defaults for CUDA 12
+
+configopts = '-DCUDA_ARCH="%(cuda_cc_cmake)s" '
+
+# Can't run all tests (55 failing); many fail due to mixed precision not being supported
+# some fail due to missing external data files, many unknown issues
+# All tests can be attempted with "amgx_tests_launcher --all"
+local_tests = [
+    'AggregatesCoarseGeneratorTest',
+    'AggregatesCoarseningFactor',
+    'AggregatesDeterminism',
+    'AggregatesDiagonalOutside',
+    'AmgLevelsReuse',
+    'CAPIFailure',
+    'CAPIVersionCheck',
+    'ClassicalStrengthAffinityTest',
+    'ClassicalStrengthTest',
+    'ConfigStringParsing',
+    'CsrMultiplyTests_Poisson27_100_100',
+    'CsrMultiplyTests_Poisson27_10_10',
+    'CsrMultiplyTests_Poisson5_100_100',
+    'CsrMultiplyTests_Poisson5_10_1',
+    'CsrMultiplyTests_Poisson7_100_100',
+    'CsrMultiplyTests_Poisson7_10_10',
+    'CsrMultiplyTests_Poisson9_100_100',
+    'CsrMultiplyTests_Poisson9_10_10',
+    'CsrSparsityILU1Tests_Poisson27_100_100',
+    'CsrSparsityILU1Tests_Poisson27_10_10',
+    'CsrSparsityILU1Tests_Poisson5_100_100',
+    'CsrSparsityILU1Tests_Poisson5_10_10',
+    'CsrSparsityILU1Tests_Poisson7_100_100',
+    'CsrSparsityILU1Tests_Poisson7_10_10',
+    'CsrSparsityILU1Tests_Poisson9_100_100',
+    'CsrSparsityILU1Tests_Poisson9_10_10',
+    'CsrSparsityTests_Poisson27_100_100',
+    'CsrSparsityTests_Poisson27_10_10',
+    'CsrSparsityTests_Poisson5_100_100',
+    'CsrSparsityTests_Poisson5_10_10',
+    'CsrSparsityTests_Poisson7_100_100',
+    'CsrSparsityTests_Poisson7_10_10',
+    'CsrSparsityTests_Poisson9_100_100',
+    'CsrSparsityTests_Poisson9_10_10',
+    'DenseLUSolverTest_Factorization_Id_256',
+    'DenseLUSolverTest_Factorization_Id_32',
+    'DenseLUSolverTest_Solve_Id_256',
+    'DenseLUSolverTest_Solve_Id_32',
+    'DenseLUSolverTest_Solve_Poisson3D',
+    'FactoriesTest',
+    'FGMRESConvergencePoisson',
+    'GenericSpMVTest',
+    'IDRConvergencePoisson',
+    'IDRmsyncConvergencePoisson',
+    'LargeMatricesSupport',
+    'LowDegDeterminism',
+    'MatrixTests',
+    'MatrixVectorMultiplyTests',
+    'MinMaxColoringTest',
+    'Nested_AMG_equivalence',
+    'NestedSolvers',
+    'NormTests',
+    'ObjectDestructionSequence',
+    'PermuteTests',
+    'RandomMatrix',
+    'SmootherBlockPoissonTest',
+    'TemplateConfigTest',
+    'TemplateTest',
+    'truncateCountTest',
+    'VectorTests',
+]
+
+runtest = "amgx_tests_launcher && src/amgx_tests_launcher " + ' '.join(local_tests)
+
+sanity_check_paths = {
+    'files': ['include/amgx_c.h', 'lib/libamgx.a', 'lib/libamgxsh.%s' % SHLIB_EXT],
+    'dirs': [],
+}
+
+moduleclass = 'lib'

easybuild/easyconfigs/a/AMGX/AMGX-2.4.0_external-thrust.patch

@@ -0,0 +1,13 @@
+Forces AMGX to use external dependencies, avoiding needing the git submodule
+the entire (deprecated) thrust library and all its dependencies.
+author: micketeer@gmail.com
+--- CMakeLists.txt.orig	2024-03-30 01:54:34.469780980 +0100
++++ CMakeLists.txt	2024-03-30 01:54:46.491884432 +0100
+@@ -251,7 +251,6 @@
+ ENDIF()
+ 
+ # We depend on a specific version of thrust now so include the submodule
+-add_subdirectory("thrust")
+ find_package(Thrust REQUIRED CONFIG)
+ thrust_create_target(Thrust)
+ 

easybuild/easyconfigs/a/AMGX/AMGX-2.4.0_fix-openmp-linking.patch

@@ -0,0 +1,15 @@
+Adds missing link option necessary for openmp linking.
+The target_link_libraries used for amgx are not sufficient as CMake haven't
+sorted this out yet, thus manually adding the flag for GCC.
+author: micketeer@gmail.com
+--- CMakeLists.txt.orig	2024-03-30 03:27:22.354168764 +0100
++++ CMakeLists.txt	2024-03-30 03:28:00.397486779 +0100
+@@ -291,6 +291,8 @@
+ ELSE (WIN32)
+   target_link_libraries(amgx CUDA::cublas CUDA::cusparse CUDA::cusolver CUDA::nvToolsExt m pthread)
+   target_link_libraries(amgxsh CUDA::cublas CUDA::cusparse CUDA::cusolver CUDA::nvToolsExt m pthread)
++  target_link_options(amgx INTERFACE "-fopenmp")
++  target_link_options(amgxsh INTERFACE "-fopenmp")
+ ENDIF(WIN32)
+ 
+ if(MPI_FOUND)