diff --git a/docs/version-specific/easyblocks.md b/docs/version-specific/easyblocks.md index 00b6b774fc..a2800fb2a9 100644 --- a/docs/version-specific/easyblocks.md +++ b/docs/version-specific/easyblocks.md @@ -4,9 +4,6 @@ - Binary - Conda - EB_ABAQUS - - EB_Allinea - - EB_Anaconda - - EB_Mamba - EB_Anaconda - EB_Mamba - EB_AOMP @@ -14,8 +11,6 @@ - EB_CRISPR_minus_DAV - EB_CUDA - EB_CUDAcompat - - EB_EPD - - EB_IMOD - EB_Maple - EB_Mathematica - EB_Molpro @@ -26,13 +21,11 @@ - EB_ANSYS - EB_ant - EB_AOCC - - EB_BiSearch - EB_Chimera - EB_code_minus_server - EB_COMSOL - EB_FDTD_underscore_Solutions - EB_FLUENT - - EB_IronPython - EB_Java - EB_MATLAB - EB_MCR @@ -40,13 +33,9 @@ - EB_NVHPC - EB_optiSLang - EB_ORCA - - EB_PGI - - EB_Samcef - EB_Stata - EB_Tornado - - EB_TotalView - Rpm - - EB_Mono - Bundle - BuildEnv - CrayToolchain @@ -57,6 +46,7 @@ - PythonBundle - CargoPythonBundle - SystemCompiler + - SystemCompilerGCC - SystemMPI - Toolchain - ConfigureMake @@ -65,16 +55,11 @@ - EB_DualSPHysics - CMakeNinja - CMakePythonPackage - - EB_DOLFIN - EB_pybind11 - - EB_UFC - EB_Amber - EB_Armadillo - - EB_BamTools - - EB_Blender - EB_CGAL - EB_Clang - - EB_Doxygen - EB_Eigen - EB_ELSI - EB_FlexiBLAS @@ -95,42 +80,31 @@ - EB_SuperLU - EB_Trilinos - ConfigureMakePythonPackage - - EB_ARB - - EB_ATLAS - EB_BerkeleyGW - EB_binutils - - EB_BLACS - EB_Bowtie - EB_BWA - EB_bzip2 - EB_CBLAS - - EB_Chapel - EB_CMake - - EB_cppcheck - EB_Cufflinks - EB_DB - - EB_DL_underscore_POLY_underscore_Classic - - EB_Doris - - EB_EggLib - EB_ELPA - EB_ESMF - - EB_ESPResSo - EB_Extrae - EB_Ferret - EB_FFTW - EB_FFTW_period_MPI - EB_flex - EB_flook - - EB_FreeFEM - EB_freetype - EB_g2clib - EB_g2lib - EB_GCC - - SystemCompiler + - SystemCompilerGCC - EB_GHC - EB_Go - EB_HDF5 - - EB_HEALPix - EB_HPCG - EB_HPL - EB_HPCC @@ -140,20 +114,14 @@ - EB_libQGLViewer - EB_libxml2 - EB_Lua - - EB_MetaVelvet - EB_METIS - EB_Molpro - - EB_Mono - - EB_Mothur - EB_MPICH - - EB_MVAPICH2 - EB_psmpi - EB_MrBayes - EB_MUMmer - EB_MUMPS - - EB_MyMediaLite - EB_NCCL - - EB_ncurses - EB_netCDF_minus_Fortran - EB_NWChem - EB_OCaml @@ -162,12 +130,9 @@ - EB_OpenMPI - EB_OpenSSL - EB_Paraver - - EB_Pasha - EB_PDT - EB_Perl - EB_PETSc - - EB_pplacer - - EB_Primer3 - EB_Python - EB_Tkinter - EB_QScintilla @@ -177,16 +142,11 @@ - EB_Ruby - EB_Rust - EB_SAMtools - - EB_Scalasca1 - EB_Score_minus_P - - EB_SHRiMP - EB_Siesta - EB_SLEPc - - EB_SOAPdenovo - EB_SuiteSparse - EB_SWIG - - EB_TAU - - EB_tbb - EB_tbb - EB_UCX_Plugins - EB_Velvet @@ -197,46 +157,31 @@ - CMakeMakeCp - EB_DualSPHysics - CmdCp - - EB_fastStructure - - EB_BamTools - EB_BLAT - EB_Bowtie2 - - EB_BWISE - EB_MetalWalls - - EB_MSM - - EB_mutil - EB_MXNet - EB_NAMD - EB_ORCA - PerlModule - SystemMPI - - EB_ACML - EB_ADF - - EB_ALADIN - EB_Bazel - EB_Boost - - EB_CFDEMcoupling - - EB_CHARMM - EB_code_minus_server - EB_CP2K - EB_FSL - EB_GAMESS_minus_US - EB_Gctf - - EB_libsmm - - EB_Modeller - EB_MRtrix - EB_NCL - - EB_NEMO - EB_Nim - EB_OpenFOAM - - EB_OpenIFS - EB_PALM - EB_ParMETIS - EB_QuantumESPRESSO - EB_Rosetta - - EB_SAS - EB_SCOTCH - - EB_SNPhylo - EB_STAR_minus_CCM_plus_ - EB_TINKER - EB_Trinity @@ -244,7 +189,6 @@ - EB_WIEN2k - EB_WPS - EB_WRF - - EB_WRF_minus_Fire - ExtensionEasyBlock - Cargo - CargoPythonBundle @@ -258,22 +202,17 @@ - PythonPackage - CargoPythonPackage - CMakePythonPackage - - EB_DOLFIN - EB_pybind11 - - EB_UFC - ConfigureMakePythonPackage - EB_cryptography - EB_dm_minus_reverb - EB_EasyBuildMeta - - EB_EggLib - EB_jaxlib - EB_libxml2 - EB_Metagenome_Atlas - EB_netcdf4_minus_python - EB_nose - EB_numexpr - - EB_PyQuante - - EB_python_minus_meep - EB_PyTorch - EB_PyZMQ - EB_scipy @@ -283,7 +222,6 @@ - EB_tensorflow_minus_compression - EB_TensorRT - EB_torchvision - - EB_VSC_minus_tools - EB_wxPython - FortranPythonPackage - EB_numpy @@ -291,9 +229,6 @@ - VersionIndependentPythonPackage - VSCPythonPackage - RPackage - - EB_Bioconductor - - EB_pbdMPI - - EB_pbdSLAP - EB_reticulate - EB_Rmpi - EB_Rserve @@ -302,12 +237,9 @@ - Tarball - BinariesTarball - EB_cuDNN - - EB_FoldX - EB_FreeSurfer - EB_Gurobi - EB_Hadoop - - EB_MTL4 - - EB_picard - EB_RepeatMasker - EB_RepeatModeler - GoPackage @@ -317,20 +249,16 @@ - EB_iccifort - EB_ifort - EB_iccifort - - SystemCompiler - EB_ifort - EB_iccifort - - SystemCompiler - EB_imkl - EB_imkl_minus_FFTW - EB_impi - SystemMPI - EB_Inspector - EB_intel_minus_compilers - - EB_ipp - EB_itac - EB_tbb - - EB_tbb - EB_VTune - MesonNinja - CMakeNinja @@ -342,13 +270,11 @@ - EB_ANSYS - EB_ant - EB_AOCC - - EB_BiSearch - EB_Chimera - EB_code_minus_server - EB_COMSOL - EB_FDTD_underscore_Solutions - EB_FLUENT - - EB_IronPython - EB_Java - EB_MATLAB - EB_MCR @@ -356,11 +282,8 @@ - EB_NVHPC - EB_optiSLang - EB_ORCA - - EB_PGI - - EB_Samcef - EB_Stata - EB_Tornado - - EB_TotalView - SCons - EB_Xmipp - Waf @@ -378,22 +301,17 @@ - PythonPackage - CargoPythonPackage - CMakePythonPackage - - EB_DOLFIN - EB_pybind11 - - EB_UFC - ConfigureMakePythonPackage - EB_cryptography - EB_dm_minus_reverb - EB_EasyBuildMeta - - EB_EggLib - EB_jaxlib - EB_libxml2 - EB_Metagenome_Atlas - EB_netcdf4_minus_python - EB_nose - EB_numexpr - - EB_PyQuante - - EB_python_minus_meep - EB_PyTorch - EB_PyZMQ - EB_scipy @@ -403,7 +321,6 @@ - EB_tensorflow_minus_compression - EB_TensorRT - EB_torchvision - - EB_VSC_minus_tools - EB_wxPython - FortranPythonPackage - EB_numpy @@ -411,9 +328,6 @@ - VersionIndependentPythonPackage - VSCPythonPackage - RPackage - - EB_Bioconductor - - EB_pbdMPI - - EB_pbdSLAP - EB_reticulate - EB_Rmpi - EB_Rserve @@ -422,12 +336,9 @@ - Tarball - BinariesTarball - EB_cuDNN - - EB_FoldX - EB_FreeSurfer - EB_Gurobi - EB_Hadoop - - EB_MTL4 - - EB_picard - EB_RepeatMasker - EB_RepeatModeler diff --git a/docs/version-specific/easyconfig-constants.md b/docs/version-specific/easyconfig-constants.md index 493467c142..f68acfe536 100644 --- a/docs/version-specific/easyconfig-constants.md +++ b/docs/version-specific/easyconfig-constants.md @@ -1,19 +1,20 @@ # Constants that can be used in easyconfigs {: #avail_easyconfig_constants } -Constant name |Constant value |Description -----------------------|-------------------------------------------------------------|------------------------------------------------------------------------------- -``ARCH`` |``aarch64`` |CPU architecture of current system (aarch64, x86_64, ppc64le, ...) -``EXTERNAL_MODULE`` |``EXTERNAL_MODULE`` |External module marker -``HOME`` |``/home/example`` |Home directory ($HOME) -``OS_NAME`` |``UNKNOWN`` |System name (e.g. 'fedora' or 'RHEL') -``OS_PKG_IBVERBS_DEV``|``('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')``|OS packages providing ibverbs/infiniband development support -``OS_PKG_OPENSSL_BIN``|``openssl`` |OS packages providing the openSSL binary -``OS_PKG_OPENSSL_DEV``|``('openssl-devel', 'libssl-dev', 'libopenssl-devel')`` |OS packages providing openSSL development support -``OS_PKG_OPENSSL_LIB``|``('libssl', 'libopenssl')`` |OS packages providing openSSL libraries -``OS_PKG_PAM_DEV`` |``('pam-devel', 'libpam0g-dev')`` |OS packages providing Pluggable Authentication Module (PAM) development support -``OS_TYPE`` |``Darwin`` |System type (e.g. 'Linux' or 'Darwin') -``OS_VERSION`` |``UNKNOWN`` |System version -``SYSTEM`` |``{'name': 'system', 'version': 'system'}`` |System toolchain -``SYS_PYTHON_VERSION``|``3.11.9`` |System Python version (platform.python_version()) +Constant name |Constant value |Description +---------------------------|-------------------------------------------------------------|------------------------------------------------------------------------------- +``ARCH`` |``aarch64`` |CPU architecture of current system (aarch64, x86_64, ppc64le, ...) +``EXTERNAL_MODULE`` |``EXTERNAL_MODULE`` |External module marker +``HOME`` |``/home/example`` |Home directory ($HOME) +``MODULE_LOAD_ENV_HEADERS``|``CPP_HEADERS`` |Environment variables with search paths to CPP headers +``OS_NAME`` |``UNKNOWN`` |System name (e.g. 'fedora' or 'RHEL') +``OS_PKG_IBVERBS_DEV`` |``('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')``|OS packages providing ibverbs/infiniband development support +``OS_PKG_OPENSSL_BIN`` |``openssl`` |OS packages providing the openSSL binary +``OS_PKG_OPENSSL_DEV`` |``('openssl-devel', 'libssl-dev', 'libopenssl-devel')`` |OS packages providing openSSL development support +``OS_PKG_OPENSSL_LIB`` |``('libssl', 'libopenssl')`` |OS packages providing openSSL libraries +``OS_PKG_PAM_DEV`` |``('pam-devel', 'libpam0g-dev')`` |OS packages providing Pluggable Authentication Module (PAM) development support +``OS_TYPE`` |``Darwin`` |System type (e.g. 'Linux' or 'Darwin') +``OS_VERSION`` |``UNKNOWN`` |System version +``SYSTEM`` |``{'name': 'system', 'version': 'system'}`` |System toolchain +``SYS_PYTHON_VERSION`` |``3.11.10`` |System Python version (platform.python_version()) *(see also* ``eb --avail-easyconfig-constants`` *)* diff --git a/docs/version-specific/easyconfig-parameters.md b/docs/version-specific/easyconfig-parameters.md index 2ed5e4d7f4..83cab2dad4 100644 --- a/docs/version-specific/easyconfig-parameters.md +++ b/docs/version-specific/easyconfig-parameters.md @@ -2,156 +2,154 @@ ## Mandatory parameters -**Parameter name** |**Description** |**Default value** ------------------------|-----------------------------------------------------------------------------|----------------- -`description` |A short description of the software |`None` -`docurls` |List of urls with documentation of the software (not necessarily on homepage)|`None` -`homepage` |The homepage of the software |`None` -`name` |Name of software |`None` -`software_license` |Software license |`None` -`software_license_urls`|List of software license locations |`None` -`toolchain` |Name and version of toolchain |`None` -`version` |Version of software |`None` +**Parameter name** |**Description** |**Default value**|**Alternative name** +-----------------------|-----------------------------------------------------------------------------|-----------------|-------------------- +`description` |A short description of the software |`None` | +`docurls` |List of urls with documentation of the software (not necessarily on homepage)|`None` |`doc_urls` +`homepage` |The homepage of the software |`None` | +`name` |Name of software |`None` | +`software_license` |Software license |`None` | +`software_license_urls`|List of software license locations |`None` | +`toolchain` |Name and version of toolchain |`None` | +`version` |Version of software |`None` | ## Toolchain parameters -**Parameter name**|**Description** |**Default value** -------------------|---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|----------------- -`onlytcmod` |Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).|`False` -`toolchainopts` |Extra options for compilers |`None` +**Parameter name**|**Description** |**Default value**|**Alternative name** +------------------|---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|-----------------|------------------------ +`onlytcmod` |Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).|`False` |`only_toolchain_env_mod` +`toolchainopts` |Extra options for compilers |`None` |`toolchain_opts` ## Build parameters -**Parameter name** |**Description** |**Default value** ------------------------------|-----------------------------------------------------------------------------------------------------------------------------------------|----------------- -`banned_linked_shared_libs` |List of shared libraries (names, file names, or paths) which are not allowed to be linked in any installed binary/library |`[]` -`bin_lib_subdirs` |List of subdirectories for binaries and libraries, which is used during sanity check to check RPATH linking and banned/required libraries|`[]` -`bitbucket_account` |Bitbucket account name to be used to resolve template values in source URLs |`"%(namelower)s"` -`buildopts` |Extra options passed to make step (default already has -j X) |`""` -`checksums` |Checksums for sources and patches |`[]` -`configopts` |Extra options passed to configure (default already has --prefix) |`""` -`cuda_compute_capabilities` |List of CUDA compute capabilities to build with (if supported) |`[]` -`download_instructions` |Specify steps to acquire necessary file, if obtaining it is difficult |`""` -`easyblock` |EasyBlock to use for building; if set to None, an easyblock is selected based on the software name |`None` -`easybuild_version` |EasyBuild-version this spec-file was written for |`None` -`enhance_sanity_check` |Indicate that additional sanity check commands & paths should enhance the existing sanity check, not replace it |`False` -`fix_bash_shebang_for` |List of files for which Bash shebang should be fixed to '#!/usr/bin/env bash' (glob patterns supported) |`None` -`fix_perl_shebang_for` |List of files for which Perl shebang should be fixed to '#!/usr/bin/env perl' (glob patterns supported) |`None` -`fix_python_shebang_for` |List of files for which Python shebang should be fixed to '#!/usr/bin/env python' (glob patterns supported) |`None` -`github_account` |GitHub account name to be used to resolve template values in source URLs |`"%(namelower)s"` -`hidden` |Install module file as 'hidden' by prefixing its version with '.' |`False` -`installopts` |Extra options for installation |`""` -`maxparallel` |Max degree of parallelism |`None` -`module_only` |Only generate module file |`False` -`parallel` |Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit) |`None` -`patches` |List of patches to apply |`[]` -`postinstallcmds` |Commands to run after the install step. |`[]` -`postinstallmsgs` |Messages to print after running the install step. |`[]` -`postinstallpatches` |Patch files to apply after running the install step. |`[]` -`prebuildopts` |Extra options pre-passed to build command. |`""` -`preconfigopts` |Extra options pre-passed to configure. |`""` -`preinstallopts` |Extra prefix options for installation. |`""` -`pretestopts` |Extra prefix options for test. |`""` -`required_linked_shared_libs`|List of shared libraries (names, file names, or paths) which must be linked in all installed binaries/libraries |`[]` -`runtest` |Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test) |`None` -`sanity_check_commands` |format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h') |`[]` -`sanity_check_paths` |List of files and directories to check (format: {'files':<list>, 'dirs':<list>}) |`{}` -`skip` |Skip existing software |`False` -`skipsteps` |Skip these steps |`[]` -`source_urls` |List of URLs for source files |`[]` -`sources` |List of source files |`[]` -`stop` |Keyword to halt the build process after a certain step. |`None` -`testopts` |Extra options for test. |`""` -`tests` |List of test-scripts to run after install. A test script should return a non-zero exit status to fail |`[]` -`unpack_options` |Extra options for unpacking source |`""` -`unwanted_env_vars` |List of environment variables that shouldn't be set during build |`[]` -`versionprefix` |Additional prefix for software version (placed before version and toolchain name) |`""` -`versionsuffix` |Additional suffix for software version (placed after toolchain name) |`""` +**Parameter name** |**Description** |**Default value**|**Alternative name** +-----------------------------|-----------------------------------------------------------------------------------------------------------------------------------------|-----------------|------------------------------------- +`banned_linked_shared_libs` |List of shared libraries (names, file names, or paths) which are not allowed to be linked in any installed binary/library |`[]` | +`bin_lib_subdirs` |List of subdirectories for binaries and libraries, which is used during sanity check to check RPATH linking and banned/required libraries|`[]` | +`bitbucket_account` |Bitbucket account name to be used to resolve template values in source URLs |`"%(namelower)s"`| +`buildopts` |Extra options passed to make step (default already has -j X) |`""` |`build_opts` +`checksums` |Checksums for sources and patches |`[]` | +`configopts` |Extra options passed to configure (default already has --prefix) |`""` |`configure_opts` +`cuda_compute_capabilities` |List of CUDA compute capabilities to build with (if supported) |`[]` | +`download_instructions` |Specify steps to acquire necessary file, if obtaining it is difficult |`""` | +`easyblock` |EasyBlock to use for building; if set to None, an easyblock is selected based on the software name |`None` | +`easybuild_version` |EasyBuild-version this spec-file was written for |`None` | +`enhance_sanity_check` |Indicate that additional sanity check commands & paths should enhance the existing sanity check, not replace it |`False` | +`fix_bash_shebang_for` |List of files for which Bash shebang should be fixed to '#!/usr/bin/env bash' (glob patterns supported) |`None` | +`fix_perl_shebang_for` |List of files for which Perl shebang should be fixed to '#!/usr/bin/env perl' (glob patterns supported) |`None` | +`fix_python_shebang_for` |List of files for which Python shebang should be fixed to '#!/usr/bin/env python' (glob patterns supported) |`None` | +`github_account` |GitHub account name to be used to resolve template values in source URLs |`"%(namelower)s"`| +`hidden` |Install module file as 'hidden' by prefixing its version with '.' |`False` | +`installopts` |Extra options for installation |`""` |`install_opts` +`maxparallel` |Max degree of parallelism |`None` |`max_parallel` +`module_only` |Only generate module file |`False` | +`patches` |List of patches to apply |`[]` | +`postinstallcmds` |Commands to run after the install step. |`[]` |`post_install_cmds` +`postinstallmsgs` |Messages to print after running the install step. |`[]` |`post_install_msgs` +`postinstallpatches` |Patch files to apply after running the install step. |`[]` |`post_install_patches` +`prebuildopts` |Extra options pre-passed to build command. |`""` |`pre_build_opts` +`preconfigopts` |Extra options pre-passed to configure. |`""` |`pre_configure_opts` +`preinstallopts` |Extra prefix options for installation. |`""` |`pre_install_opts` +`pretestopts` |Extra prefix options for test. |`""` |`pre_test_opts` +`required_linked_shared_libs`|List of shared libraries (names, file names, or paths) which must be linked in all installed binaries/libraries |`[]` | +`runtest` |Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test) |`None` |`run_test` +`sanity_check_commands` |format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h') |`[]` |`sanity_check_cmds` +`sanity_check_paths` |List of files and directories to check (format: {'files':<list>, 'dirs':<list>}) |`{}` | +`skip` |Skip existing software |`False` | +`skip_mod_files_sanity_check`|Skip the check for .mod files in a GCCcore level install |`False` |`skip_fortran_mod_files_sanity_check` +`skipsteps` |Skip these steps |`[]` |`skip_steps` +`source_urls` |List of URLs for source files |`[]` | +`sources` |List of source files |`[]` | +`stop` |Keyword to halt the build process after a certain step. |`None` | +`testopts` |Extra options for test. |`""` |`test_opts` +`tests` |List of test-scripts to run after install. A test script should return a non-zero exit status to fail |`[]` | +`unpack_options` |Extra options for unpacking source |`""` |`unpack_opts` +`unwanted_env_vars` |List of environment variables that shouldn't be set during build |`[]` | +`versionprefix` |Additional prefix for software version (placed before version and toolchain name) |`""` |`version_prefix` +`versionsuffix` |Additional suffix for software version (placed after toolchain name) |`""` |`version_suffix` ## File-management parameters -**Parameter name** |**Description** |**Default value** -----------------------|------------------------------------------------------------------------------------------------------------------------------|----------------- -`buildininstalldir` |Boolean to build (True) or not build (False) in the installation directory |`False` -`cleanupoldbuild` |Boolean to remove (True) or backup (False) the previous build directory with identical name or not. |`True` -`cleanupoldinstall` |Boolean to remove (True) or backup (False) the previous install directory with identical name or not. |`True` -`dontcreateinstalldir`|Boolean to create (False) or not create (True) the install directory |`False` -`keeppreviousinstall` |Boolean to keep the previous installation with identical name. Experts only! |`False` -`keepsymlinks` |Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied|`False` -`start_dir` |Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path. |`None` +**Parameter name** |**Description** |**Default value**|**Alternative name** +----------------------|------------------------------------------------------------------------------------------------------------------------------|-----------------|--------------------------- +`buildininstalldir` |Boolean to build (True) or not build (False) in the installation directory |`False` |`build_in_install_dir` +`cleanupoldbuild` |Boolean to remove (True) or backup (False) the previous build directory with identical name or not. |`True` |`clean_up_old_build` +`cleanupoldinstall` |Boolean to remove (True) or backup (False) the previous install directory with identical name or not. |`True` |`clean_up_old_install` +`dontcreateinstalldir`|Boolean to create (False) or not create (True) the install directory |`False` |`do_not_create_install_dir` +`keeppreviousinstall` |Boolean to keep the previous installation with identical name. Experts only! |`False` |`keep_previous_install` +`keepsymlinks` |Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied|`True` |`keep_symlinks` +`start_dir` |Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path. |`None` | ## Dependencies parameters -**Parameter name** |**Description** |**Default value** --------------------------|--------------------------------------------------------------------------|----------------- -`allow_system_deps` |Allow listed system dependencies (format: (<name>, <version>))|`[]` -`builddependencies` |List of build dependencies |`[]` -`dependencies` |List of dependencies |`[]` -`hiddendependencies` |List of dependencies available as hidden modules |`[]` -`moddependpaths` |Absolute path(s) to prepend to MODULEPATH before loading dependencies |`None` -`multi_deps` |Dict of lists of dependency versions over which to iterate |`{}` -`multi_deps_load_default`|Load module for first version listed in multi_deps by default |`True` -`osdependencies` |OS dependencies that should be present on the system |`[]` +**Parameter name** |**Description** |**Default value**|**Alternative name** +-------------------------|--------------------------------------------------------------------------|-----------------|-------------------------- +`allow_system_deps` |Allow listed system dependencies (format: (<name>, <version>))|`[]` | +`builddependencies` |List of build dependencies |`[]` |`build_deps` +`dependencies` |List of dependencies |`[]` |`deps` +`hiddendependencies` |List of dependencies available as hidden modules |`[]` |`hidden_deps` +`moddependpaths` |Absolute path(s) to prepend to MODULEPATH before loading dependencies |`None` |`modulepath_prepend_paths` +`multi_deps` |Dict of lists of dependency versions over which to iterate |`{}` | +`multi_deps_load_default`|Load module for first version listed in multi_deps by default |`True` | +`osdependencies` |OS dependencies that should be present on the system |`[]` |`os_deps` ## License parameters -**Parameter name** |**Description** |**Default value** ----------------------|---------------------------------------------------------------------------------------------------------------------------------------------------|----------------- -`accept_eula` |Accepted End User License Agreement (EULA) for this software |`False` -`group` |Name of the user group for which the software should be available; format: string or 2-tuple with group name + custom error for users outside group|`None` -`key` |Key for installing software |`None` -`license_file` |License file for software |`None` -`license_server` |License server for software |`None` -`license_server_port`|Port for license server |`None` +**Parameter name** |**Description** |**Default value**|**Alternative name** +---------------------|---------------------------------------------------------------------------------------------------------------------------------------------------|-----------------|-------------------- +`accept_eula` |Accepted End User License Agreement (EULA) for this software |`False` | +`group` |Name of the user group for which the software should be available; format: string or 2-tuple with group name + custom error for users outside group|`None` | +`key` |Key for installing software |`None` | +`license_file` |License file for software |`None` | +`license_server` |License server for software |`None` | +`license_server_port`|Port for license server |`None` | ## Extensions parameters -**Parameter name** |**Description** |**Default value** -------------------------|----------------------------------------------------------------------------------------------------------|----------------- -`exts_classmap` |Map of extension name to class for handling build and installation. |`{}` -`exts_default_options` |List of default options for extensions |`{}` -`exts_defaultclass` |List of module for and name of the default extension class |`None` -`exts_download_dep_fail`|Fail if downloaded dependencies are detected for extensions |`False` -`exts_filter` |Extension filter details: template for cmd and input to cmd (templates for ext_name, ext_version and src).|`None` -`exts_list` |List with extensions added to the base installation |`[]` +**Parameter name** |**Description** |**Default value**|**Alternative name** +------------------------|----------------------------------------------------------------------------------------------------------|-----------------|-------------------- +`exts_classmap` |Map of extension name to class for handling build and installation. |`{}` |`exts_class_map` +`exts_default_options` |List of default options for extensions |`{}` |`exts_default_opts` +`exts_defaultclass` |List of module for and name of the default extension class |`None` |`exts_default_class` +`exts_download_dep_fail`|Fail if downloaded dependencies are detected for extensions |`False` | +`exts_filter` |Extension filter details: template for cmd and input to cmd (templates for ext_name, ext_version and src).|`None` | +`exts_list` |List with extensions added to the base installation |`[]` | ## Modules parameters -**Parameter name** |**Description** |**Default value** -----------------------------|----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|----------------- -`allow_append_abs_path` |Allow specifying absolute paths to append in modextrapaths_append |`False` -`allow_prepend_abs_path` |Allow specifying absolute paths to prepend in modextrapaths |`False` -`citing` |Free-form text that describes how the software should be cited in publications |`None` -`docpaths` |List of paths for documentation relative to installation directory |`None` -`examples` |Free-form text with examples on using the software |`None` -`include_modpath_extensions`|Include $MODULEPATH extensions specified by module naming scheme. |`True` -`modaliases` |Aliases to be defined in module file |`{}` -`modaltsoftname` |Module name to use (rather than using software name |`None` -`modextrapaths` |Extra paths to be prepended in module file |`{}` -`modextrapaths_append` |Extra paths to be appended in module file |`{}` -`modextravars` |Extra environment variables to be added to module file |`{}` -`modloadmsg` |Message that should be printed when generated module is loaded |`{}` -`modluafooter` |Footer to include in generated module file (Lua syntax) |`""` -`modtclfooter` |Footer to include in generated module file (Tcl syntax) |`""` -`module_depends_on` |Use depends_on (Lmod 7.6.1+) for dependencies in generated module (implies recursive unloading of modules). |`False` -`moduleclass` |Module class to be used for this software |`"base"` -`moduleforceunload` |Force unload of all modules when loading the extension |`False` -`moduleloadnoconflict` |Don't check for conflicts, unload other versions instead |`False` -`modunloadmsg` |Message that should be printed when generated module is unloaded |`{}` -`recursive_module_unload` |Recursive unload of all dependencies when unloading module (True/False to hard enable/disable; None implies honoring the --recursive-module-unload EasyBuild configuration setting|`None` -`site_contacts` |String/list of strings with site contacts for the software |`None` -`upstream_contacts` |String/list of strings with upstream contact addresses (e.g., support e-mail, mailing list, bugtracker) |`None` -`usage` |Usage instructions for the software |`None` -`whatis` |List of brief (one line) description entries for the software |`None` +**Parameter name** |**Description** |**Default value**|**Alternative name** +----------------------------|----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|-----------------|-------------------------- +`citing` |Free-form text that describes how the software should be cited in publications |`None` | +`docpaths` |List of paths for documentation relative to installation directory |`None` |`doc_paths` +`examples` |Free-form text with examples on using the software |`None` | +`include_modpath_extensions`|Include $MODULEPATH extensions specified by module naming scheme. |`True` |`include_modulepath_exts` +`modaliases` |Aliases to be defined in module file |`{}` |`env_mod_aliases` +`modaltsoftname` |Module name to use (rather than using software name |`None` |`env_mod_alt_soft_name` +`modextrapaths` |Extra paths to be prepended in module file |`{}` |`env_mod_extra_paths` +`modextravars` |Extra environment variables to be added to module file |`{}` |`env_mod_extra_vars` +`modloadmsg` |Message that should be printed when generated module is loaded |`{}` |`env_mod_load_msg` +`modluafooter` |Footer to include in generated module file (Lua syntax) |`""` |`env_mod_lua_footer` +`modtclfooter` |Footer to include in generated module file (Tcl syntax) |`""` |`env_mod_tcl_footer` +`module_depends_on` |Use depends_on (Lmod 7.6.1+) for dependencies in generated module (implies recursive unloading of modules) [DEPRECATED] |`None` |`env_mod_depends_on` +`module_search_path_headers`|Environment variable set by modules on load with search paths to header files (if None, use $CPATH) |`None` | +`moduleclass` |Module class to be used for this software |`"base"` |`env_mod_category` +`moduleforceunload` |Force unload of all modules when loading the extension |`False` |`env_mod_force_unload` +`moduleloadnoconflict` |Don't check for conflicts, unload other versions instead |`False` |`env_mod_load_no_conflict` +`modunloadmsg` |Message that should be printed when generated module is unloaded |`{}` |`env_mod_unload_msg` +`recursive_module_unload` |Recursive unload of all dependencies when unloading module (True/False to hard enable/disable; None implies honoring the --recursive-module-unload EasyBuild configuration setting|`None` |`recursive_env_mod_unload` +`site_contacts` |String/list of strings with site contacts for the software |`None` | +`upstream_contacts` |String/list of strings with upstream contact addresses (e.g., support e-mail, mailing list, bugtracker) |`None` | +`usage` |Usage instructions for the software |`None` | +`whatis` |List of brief (one line) description entries for the software |`None` | ## Other parameters -**Parameter name**|**Description** |**Default value** -------------------|---------------------------------------------------------------------------------------------------------------------------|----------------- -`block` |List of other 'block' sections on which this block depends (only relevant in easyconfigs with subblocks) |`None` -`build_info_msg` |String with information to be printed to stdout and logged during the building of the easyconfig |`None` -`buildstats` |A list of dicts with build statistics |`None` -`deprecated` |String specifying reason why this easyconfig file is deprecated and will be archived in the next major release of EasyBuild|`False` +**Parameter name**|**Description** |**Default value**|**Alternative name** +------------------|---------------------------------------------------------------------------------------------------------------------------|-----------------|-------------------- +`block` |List of other 'block' sections on which this block depends (only relevant in easyconfigs with subblocks) |`None` | +`build_info_msg` |String with information to be printed to stdout and logged during the building of the easyconfig |`None` | +`buildstats` |A list of dicts with build statistics |`None` |`build_stats` +`deprecated` |String specifying reason why this easyconfig file is deprecated and will be archived in the next major release of EasyBuild|`False` | *(see also* ``eb -a`` or ``eb --avail-easyconfig-params`` *)* diff --git a/docs/version-specific/easyconfig-templates.md b/docs/version-specific/easyconfig-templates.md index e007db8e2e..8cd51993bd 100644 --- a/docs/version-specific/easyconfig-templates.md +++ b/docs/version-specific/easyconfig-templates.md @@ -40,7 +40,6 @@ Template name |Template value * ``%(bitbucket_account)s`` * ``%(github_account)s`` * ``%(name)s`` -* ``%(parallel)s`` * ``%(version)s`` * ``%(versionsuffix)s`` * ``%(versionprefix)s`` @@ -70,24 +69,29 @@ Template name |Template value ``%(cuda_cc_space_sep)s`` |Space-separated list of CUDA compute capabilities ``%(cuda_cc_space_sep_no_period)s``|Space-separated list of CUDA compute capabilities, without periods (e.g. '80 90'). ``%(cuda_cc_semicolon_sep)s`` |Semicolon-separated list of CUDA compute capabilities +``%(cuda_int_comma_sep)s`` |Comma-separated list of integer CUDA compute capabilities +``%(cuda_int_space_sep)s`` |Space-separated list of integer CUDA compute capabilities +``%(cuda_int_semicolon_sep)s`` |Semicolon-separated list of integer CUDA compute capabilities ``%(cuda_sm_comma_sep)s`` |Comma-separated list of sm_* values that correspond with CUDA compute capabilities ``%(cuda_sm_space_sep)s`` |Space-separated list of sm_* values that correspond with CUDA compute capabilities ``%(mpi_cmd_prefix)s`` |Prefix command for running MPI programs (with default number of ranks) +``%(parallel)s`` |Degree of parallelism for e.g. make +``%(rpath_enabled)s`` |String value indicating whether or not RPATH linking is used ('true' or 'false') ``%(software_commit)s`` |Git commit id to use for the software as specified by --software-commit command line option -``%(sysroot)s`` |Location root directory of system, prefix for standard paths like /usr/lib and /usr/includeas specified by the --sysroot configuration option +``%(sysroot)s`` |Location root directory of system, prefix for standard paths like /usr/lib and /usr/includeas specify by the --sysroot configuration option ## Template constants that can be used in easyconfigs -Constant |Template value |Template name +Constant |Template description |Template value ------------------------|--------------------------------------------------------------------------------------------------------------------------------|---------------------------------------------------------------------------------------- ``APACHE_SOURCE`` |apache.org source url |``https://archive.apache.org/dist/%(namelower)s`` ``BITBUCKET_SOURCE`` |bitbucket.org source url (namelower is used if bitbucket_account easyconfig parameter is not specified) |``https://bitbucket.org/%(bitbucket_account)s/%(namelower)s/get`` ``BITBUCKET_DOWNLOADS`` |bitbucket.org downloads url (namelower is used if bitbucket_account easyconfig parameter is not specified) |``https://bitbucket.org/%(bitbucket_account)s/%(namelower)s/downloads`` ``CRAN_SOURCE`` |CRAN (contrib) source url |``https://cran.r-project.org/src/contrib`` ``FTPGNOME_SOURCE`` |http download for gnome ftp server |``https://ftp.gnome.org/pub/GNOME/sources/%(namelower)s/%(version_major_minor)s`` -``GITHUB_SOURCE`` |GitHub source URL (if github_account easyconfig parameter is not specified, namelower is used in its place) |``https://github.com/%(github_account)s/%(name)s/archive`` -``GITHUB_LOWER_SOURCE`` |GitHub source URL with lowercase name (if github_account easyconfig parameter is not specified, namelower is used in its place) |``https://github.com/%(github_account)s/%(namelower)s/archive`` -``GITHUB_RELEASE`` |GitHub release URL (if github_account easyconfig parameter is not specified, namelower is used in its place) |``https://github.com/%(github_account)s/%(name)s/releases/download/v%(version)s`` +``GITHUB_SOURCE`` |GitHub source URL (namelower is used if github_account easyconfig parameter is not specified) |``https://github.com/%(github_account)s/%(name)s/archive`` +``GITHUB_LOWER_SOURCE`` |GitHub source URL with lowercase name (namelower is used if github_account easyconfig parameter is not specified) |``https://github.com/%(github_account)s/%(namelower)s/archive`` +``GITHUB_RELEASE`` |GitHub release URL (namelower is use if github_account easyconfig parameter is not specified) |``https://github.com/%(github_account)s/%(name)s/releases/download/v%(version)s`` ``GITHUB_LOWER_RELEASE``|GitHub release URL with lowercase name (if github_account easyconfig parameter is not specified, namelower is used in its place)|``https://github.com/%(github_account)s/%(namelower)s/releases/download/v%(version)s`` ``GNU_SAVANNAH_SOURCE`` |download.savannah.gnu.org source url |``https://download-mirror.savannah.gnu.org/releases/%(namelower)s`` ``GNU_SOURCE`` |gnu.org source url (ftp mirror) |``https://ftpmirror.gnu.org/gnu/%(namelower)s`` diff --git a/docs/version-specific/eb-help.md b/docs/version-specific/eb-help.md index b0a6f5d29d..8c78760c7e 100644 --- a/docs/version-specific/eb-help.md +++ b/docs/version-specific/eb-help.md @@ -38,7 +38,7 @@ Option flag |Option description ## Basic options Option flag |Option description --------------------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +-------------------------------------------|--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ``--dry-run`` |Print build overview incl. dependencies (full paths) (default: False) ``-D, --dry-run-short`` |Print build overview incl. dependencies (short paths) (default: False) ``-x, --extended-dry-run`` |Print build environment and (expected) build procedure that will be performed (default: False) @@ -55,7 +55,7 @@ Option flag |Option description ``--robot-paths=PATH[:PATH]`` |Additional paths to consider by robot for easyconfigs (--robot paths get priority) (type pathsep-separated list; default: /home/example/work/easybuild-easyconfigs/easybuild/easyconfigs) ``--search-paths=PATH[:PATH]`` |Additional locations to consider in --search (next to --robot and --robot-paths paths) (type pathsep-separated list) ``-k, --skip`` |Skip existing software (useful for installing additional packages) (default: False) -``-s STOP, --stop=STOP`` |Stop the installation after certain step (type choice; default: source) (choices: fetch, ready, source, patch, prepare, configure, build, test, install, extensions, postiter, postproc, sanitycheck, cleanup, module, permissions, package, testcases) +``-s STOP, --stop=STOP`` |Stop the installation after certain step (type choice; default: extract) (choices: fetch, ready, extract, patch, prepare, configure, build, test, install, extensions, postiter, postproc, sanitycheck, cleanup, module, permissions, package, testcases) ``--strict=STRICT`` |Set strictness level (type choice; default: warn) (choices: ignore, warn, error) ## Configuration options @@ -69,6 +69,8 @@ Option flag |Option descrip ``--containerpath=CONTAINERPATH`` |Location where container recipe & image will be stored (default: /home/example/.local/easybuild/containers) ``--envvars-user-modules=ENVVARS-USER-MODULES`` |List of environment variables that hold the base paths for which user-specific modules will be installed relative to (type comma-separated list; default: HOME) ``--external-modules-metadata=EXTERNAL-MODULES-METADATA`` |List of (glob patterns for) paths to files specifying metadata for external modules (INI format) (type comma-separated list) +``--failed-install-build-dirs-path=PATH`` |Location where build directories are copied if installation fails; an empty value disables copying of build directories +``--failed-install-logs-path=PATH`` |Location where log files are copied if installation fails; an empty value disables copying of log files ``--hooks=HOOKS`` |Location of Python module with hook implementations (type str) ``--ignore-dirs=IGNORE-DIRS`` |Directory names to ignore when searching for files/dirs (type comma-separated list; default: .git,.svn) ``--include-easyblocks=INCLUDE-EASYBLOCKS`` |Location(s) of extra or customized easyblocks (type comma-separated list) @@ -77,11 +79,12 @@ Option flag |Option descrip ``--installpath=INSTALLPATH`` |Install path for software and modules (default: /home/example/.local/easybuild) ``--installpath-modules=INSTALLPATH-MODULES`` |Install path for modules (if None, combine --installpath and --subdir-modules) ``--installpath-software=INSTALLPATH-SOFTWARE`` |Install path for software (if None, combine --installpath and --subdir-software) -``--job-backend=JOB-BACKEND`` |Backend to use for submitting jobs (type choice; default: GC3Pie) (choices: GC3Pie, PbsPython, Slurm) +``--job-backend=JOB-BACKEND`` |Backend to use for submitting jobs (type choice; default: Slurm) (choices: GC3Pie, PbsPython, Slurm) ``--logfile-format=DIR,FORMAT`` |Directory name and format of the log file (type comma-separated tuple; default: easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log) -``--module-depends-on`` |Use depends_on (Lmod 7.6.1+) for dependencies in all generated modules (implies recursive unloading of modules). (default: False) -``--module-extensions`` |Include 'extensions' statement in generated module file (Lua syntax only) (default: False) +``--module-depends-on`` |Use depends_on (Lmod 7.6.1+) for dependencies in all generated modules (implies recursive unloading of modules). (default: True; disable with --disable-module-depends-on) +``--module-extensions`` |Include 'extensions' statement in generated module file (Lua syntax only) (default: True; disable with --disable-module-extensions) ``--module-naming-scheme=MODULE-NAMING-SCHEME`` |Module naming scheme to use (default: EasyBuildMNS) +``--module-search-path-headers=MODULE-SEARCH-PATH-HEADERS`` |Environment variable set by modules on load with search paths to header files (type choice; default: cpath) (choices: cpath, include_paths) ``--module-syntax=MODULE-SYNTAX`` |Syntax to be used for module files (type choice; default: Lua) (choices: Lua, Tcl) ``--moduleclasses=MODULECLASSES`` |Extend supported module classes (For more info on the default classes, use --show-default-moduleclasses) (type comma-separated list; default: base,ai,astro,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,quantum,phys,system,toolchain,tools,vis) ``--modules-footer=PATH`` |Path to file containing footer to be added to all generated module files @@ -93,6 +96,8 @@ Option flag |Option descrip ``--recursive-module-unload`` |Enable generating of modules that unload recursively. (default: False) ``--repository=REPOSITORY`` |Repository type, using repositorypath (type choice; default: FileRepository) (choices: FileRepository, GitRepository) ``--repositorypath=REPOSITORYPATH`` |Repository path, used by repository (is passed as list of arguments to create the repository instance). For more info, use --avail-repositories. (type comma-separated list; default: /home/example/.local/easybuild/ebfiles_repo) +``--search-path-cpp-headers=SEARCH-PATH-CPP-HEADERS`` |Search path used at build time for include directories (type choice; default: flags) (choices: flags, cpath, include_paths) +``--search-path-linker=SEARCH-PATH-LINKER`` |Search path used at build time by the linker for libraries (type choice; default: flags) (choices: flags, library_path) ``--sourcepath=SOURCEPATH`` |Path(s) to where sources should be downloaded (string, colon-separated) (default: /home/example/.local/easybuild/sources) ``--subdir-modules=SUBDIR-MODULES`` |Installpath subdir for modules (default: modules) ``--subdir-software=SUBDIR-SOFTWARE`` |Installpath subdir for software (default: software) @@ -220,12 +225,11 @@ Option flag |Option description Option flag |Option description -------------------------------------------------------------------------|-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -``--accept-eula=ACCEPT-EULA`` |Accept EULA for specified software [DEPRECATED, use --accept-eula-for instead!] (type comma-separated list) ``--accept-eula-for=ACCEPT-EULA-FOR`` |Accept EULA for specified software (type comma-separated list) -``--add-dummy-to-minimal-toolchains`` |Include dummy toolchain in minimal toolchain searches [DEPRECATED, use --add-system-to-minimal-toolchains instead!] (default: False) ``--add-system-to-minimal-toolchains`` |Include system toolchain in minimal toolchain searches (default: False) ``--allow-loaded-modules=ALLOW-LOADED-MODULES`` |List of software names for which to allow loaded modules in initial environment (type comma-separated list; default: EasyBuild) ``--allow-modules-tool-mismatch`` |Allow mismatch of modules tool and definition of 'module' function (default: False) +``--allow-unresolved-templates`` |Don't error out when templates such as %(name)s in EasyConfigs could not be resolved (default: False) ``--allow-use-as-root-and-accept-consequences`` |Allow using of EasyBuild as root (NOT RECOMMENDED!) (default: False) ``--backup-modules`` |Back up an existing module file, if any. Auto-enabled when using --module-only or --skip ``--backup-patched-files`` |Create a backup (*.orig) file when applying a patch (default: False) @@ -254,6 +258,7 @@ Option flag |Option ``--experimental`` |Allow experimental code (with behaviour that can be changed/removed at any given time). (default: False) ``--extra-modules=EXTRA-MODULES`` |List of extra modules to load after setting up the build environment (type comma-separated list) ``--extra-source-urls=URL[|URL]`` |Specify URLs to fetch sources from in addition to those in the easyconfig (type |-separated tuple; default: https://sources.easybuild.io) +``--fail-on-mod-files-gcccore`` |Fail if .mod files are detected in a GCCcore install (default: False) ``--fetch`` |Allow downloading sources ignoring OS and modules tool dependencies, implies --stop=fetch, --ignore-osdeps and ignore modules tool (default: False) ``--filter-deps=FILTER-DEPS`` |List of dependencies that you do *not* want to install with EasyBuild, because equivalent OS packages are installed. (e.g. --filter-deps=zlib,ncurses) (type comma-separated list) ``--filter-ecs=FILTER-ECS`` |List of easyconfigs (given as glob patterns) to *ignore* when given on command line or auto-selected when building with --from-pr. (e.g. --filter-ecs=*intel*) (type comma-separated list) @@ -273,10 +278,12 @@ Option flag |Option ``--ignore-test-failure`` |Ignore a failing test step (default: False) ``--insecure-download`` |Don't check the server certificate against the available certificate authorities. (default: False) ``--install-latest-eb-release`` |Install latest known version of easybuild (default: False) +``--keep-debug-symbols`` |Sets default value of debug toolchain option (default: False) ``--lib-lib64-symlink`` |Automatically create symlinks for lib/ pointing to lib64/ if the former is missing (default: True; disable with --disable-lib-lib64-symlink) ``--lib64-fallback-sanity-check`` |Fallback in sanity check to lib64/ equivalent for missing libraries (default: True; disable with --disable-lib64-fallback-sanity-check) ``--lib64-lib-symlink`` |Automatically create symlinks for lib64/ pointing to lib/ if the former is missing (default: True; disable with --disable-lib64-lib-symlink) ``--max-fail-ratio-adjust-permissions=MAX-FAIL-RATIO-ADJUST-PERMISSIONS``|Maximum ratio for failures to allow when adjusting permissions (type float; default: 0.5) +``--max-parallel=MAX-PARALLEL`` |Specify maximum level of parallelism that should be used during build procedure (type int; default: 16) ``--minimal-build-env=MINIMAL-BUILD-ENV`` |Minimal build environment to define when using system toolchain, specified as a comma-separated list that defines a mapping between name of environment variable and its value separated by a colon (':') (default: CC:gcc,CXX:g++) ``--minimal-toolchains`` |Use minimal toolchain when resolving dependencies (default: False) ``--module-cache-suffix=MODULE-CACHE-SUFFIX`` |Suffix to add to the cache file name (before the extension) when updating the modules tool cache @@ -287,9 +294,10 @@ Option flag |Option ``--optarch=OPTARCH`` |Set architecture optimization, overriding native architecture optimizations ``--output-format=OUTPUT-FORMAT`` |Set output format (type choice; default: txt) (choices: json, md, rst, txt) ``--output-style=OUTPUT-STYLE`` |Control output style; auto implies using Rich if available to produce rich output, with fallback to basic colored output (type choice; default: auto) (choices: auto, basic, no_color, rich) -``--parallel=PARALLEL`` |Specify (maximum) level of parallelism used during build procedure (type int) +``--parallel=PARALLEL`` |Specify level of parallelism that should be used during build procedure, (bypasses auto-detection of number of available cores; actual value is determined by this value + 'max_parallel' easyconfig parameter) (type int) ``--parallel-extensions-install`` |Install list of extensions in parallel (if supported) (default: False) ``--pre-create-installdir`` |Create installation directory before submitting build jobs (default: True; disable with --disable-pre-create-installdir) +``--prefer-python-search-path=PREFER-PYTHON-SEARCH-PATH`` |Prefer using specified environment variable when possible to specify where Python packages were installed; see also https://docs.easybuild.io/python-search-path (type choice; default: PYTHONPATH) (choices: PYTHONPATH, EBPYTHONPREFIXES) ``-p, --pretend`` |Does the build/installation in a test directory located in $HOME/easybuildinstall (default: False) ``--read-only-installdir`` |Set read-only permissions on installation directory after installation (default: False) ``--remove-ghost-install-dirs`` |Remove ghost installation directories when --force or --rebuild is used, rather than just warning about them (default: False) @@ -301,7 +309,7 @@ Option flag |Option ``--set-default-module`` |Set the generated module as default (default: False) ``--set-gid-bit`` |Set group ID bit on newly created directories (default: False) ``--show-progress-bar`` |Show progress bar in terminal output (default: True; disable with --disable-show-progress-bar) -``--silence-deprecation-warnings=SILENCE-DEPRECATION-WARNINGS`` |Silence specified deprecation warnings out of (python2, Lmod6, easyconfig, toolchain) (type comma-separated list) +``--silence-deprecation-warnings=SILENCE-DEPRECATION-WARNINGS`` |Silence specified deprecation warnings out of (easyconfig, toolchain) (type comma-separated list) ``--silence-hook-trigger`` |Suppress printing of debug message every time a hook is triggered (default: False) ``--skip-extensions`` |Skip installation of extensions (default: False) ``--skip-sanity-check`` |Skip running the sanity check step (e.g. testing for installed files or running basic commands) (default: False) @@ -309,8 +317,9 @@ Option flag |Option ``--skip-test-step`` |Skip running the test step (e.g. unit tests) (default: False) ``--software-commit=SOFTWARE-COMMIT`` |Git commit to use for the target software build (robot capabilities are automatically disabled) ``--sticky-bit`` |Set sticky bit on newly created directories (default: False) +``--strict-rpath-sanity-check`` |Perform strict RPATH sanity check, which involces unsetting $LD_LIBRARY_PATH before checking whether all required libraries are found (default: False) ``--sysroot=SYSROOT`` |Location root directory of system, prefix for standard paths like /usr/lib and /usr/include -``-T, --trace`` |Provide more information in output to stdout on progress (default: False) +``-T, --trace`` |Provide more information in output to stdout on progress (default: True; disable with --disable-trace) ``--umask=UMASK`` |umask to use (e.g. '022'); non-user write permissions on install directories are removed ``--unit-testing-mode`` |Run in unit test mode (default: False) ``--update-modules-tool-cache`` |Update modules tool cache file(s) after generating module file (default: False) @@ -318,7 +327,6 @@ Option flag |Option ``--use-existing-modules`` |Use existing modules when resolving dependencies with minimal toolchains (default: False) ``--use-f90cache=PATH`` |Enable use of f90cache to speed up compilation, with specified cache dir (type ; default: False) ``--verify-easyconfig-filenames`` |Verify whether filename of specified easyconfigs matches with contents (default: False) -``--wait-on-lock=WAIT-ON-LOCK`` |Wait for lock to be released; 0 implies no waiting (exit with an error if the lock already exists), non-zero value specified waiting interval [DEPRECATED: use --wait-on-lock-interval and --wait-on-lock-limit instead] (type ) ``--wait-on-lock-interval=WAIT-ON-LOCK-INTERVAL`` |Wait interval (in seconds) to use when waiting for existing lock to be removed (type ; default: 60) ``--wait-on-lock-limit=WAIT-ON-LOCK-LIMIT`` |Maximum amount of time (in seconds) to wait until lock is released (0 means no waiting at all, exit with error; -1 means no waiting limit, keep waiting) (type ; default: 0) ``--zip-logs=ZIP-LOGS`` |Zip logs that are copied to install directory, using specified command (default: gzip) diff --git a/docs/version-specific/generic-easyblocks.md b/docs/version-specific/generic-easyblocks.md index a3fa19d350..8a8ba8be4f 100644 --- a/docs/version-specific/generic-easyblocks.md +++ b/docs/version-specific/generic-easyblocks.md @@ -6,7 +6,7 @@ # Overview of generic easyblocks {: #generic_easyblocks } -[BinariesTarball](#binariestarball) - [Binary](#binary) - [BuildEnv](#buildenv) - [Bundle](#bundle) - [CMakeMake](#cmakemake) - [CMakeMakeCp](#cmakemakecp) - [CMakeNinja](#cmakeninja) - [CMakePythonPackage](#cmakepythonpackage) - [Cargo](#cargo) - [CargoPythonBundle](#cargopythonbundle) - [CargoPythonPackage](#cargopythonpackage) - [CmdCp](#cmdcp) - [Conda](#conda) - [ConfigureMake](#configuremake) - [ConfigureMakePythonPackage](#configuremakepythonpackage) - [CrayToolchain](#craytoolchain) - [FortranPythonPackage](#fortranpythonpackage) - [GoPackage](#gopackage) - [IntelBase](#intelbase) - [JAR](#jar) - [JuliaBundle](#juliabundle) - [JuliaPackage](#juliapackage) - [MakeCp](#makecp) - [MesonNinja](#mesonninja) - [ModuleRC](#modulerc) - [OCamlPackage](#ocamlpackage) - [OctavePackage](#octavepackage) - [PackedBinary](#packedbinary) - [PerlBundle](#perlbundle) - [PerlModule](#perlmodule) - [PythonBundle](#pythonbundle) - [PythonPackage](#pythonpackage) - [RPackage](#rpackage) - [Rpm](#rpm) - [RubyGem](#rubygem) - [SCons](#scons) - [SystemCompiler](#systemcompiler) - [SystemMPI](#systemmpi) - [Tarball](#tarball) - [Toolchain](#toolchain) - [VSCPythonPackage](#vscpythonpackage) - [VersionIndependentPythonPackage](#versionindependentpythonpackage) - [Waf](#waf) +[BinariesTarball](#binariestarball) - [Binary](#binary) - [BuildEnv](#buildenv) - [Bundle](#bundle) - [CMakeMake](#cmakemake) - [CMakeMakeCp](#cmakemakecp) - [CMakeNinja](#cmakeninja) - [CMakePythonPackage](#cmakepythonpackage) - [Cargo](#cargo) - [CargoPythonBundle](#cargopythonbundle) - [CargoPythonPackage](#cargopythonpackage) - [CmdCp](#cmdcp) - [Conda](#conda) - [ConfigureMake](#configuremake) - [ConfigureMakePythonPackage](#configuremakepythonpackage) - [CrayToolchain](#craytoolchain) - [FortranPythonPackage](#fortranpythonpackage) - [GoPackage](#gopackage) - [IntelBase](#intelbase) - [JAR](#jar) - [JuliaBundle](#juliabundle) - [JuliaPackage](#juliapackage) - [MakeCp](#makecp) - [MesonNinja](#mesonninja) - [ModuleRC](#modulerc) - [OCamlPackage](#ocamlpackage) - [OctavePackage](#octavepackage) - [PackedBinary](#packedbinary) - [PerlBundle](#perlbundle) - [PerlModule](#perlmodule) - [PythonBundle](#pythonbundle) - [PythonPackage](#pythonpackage) - [RPackage](#rpackage) - [Rpm](#rpm) - [RubyGem](#rubygem) - [SCons](#scons) - [SystemCompiler](#systemcompiler) - [SystemCompilerGCC](#systemcompilergcc) - [SystemMPI](#systemmpi) - [Tarball](#tarball) - [Toolchain](#toolchain) - [VSCPythonPackage](#vscpythonpackage) - [VersionIndependentPythonPackage](#versionindependentpythonpackage) - [Waf](#waf) ## ``BinariesTarball`` @@ -15,7 +15,6 @@ Support for installing a tarball of binaries - ### Extra easyconfig parameters specific to ``BinariesTarball`` easyblock easyconfig parameter|description |default value @@ -26,6 +25,10 @@ easyconfig parameter|description ### Customised steps in ``BinariesTarball`` easyblock +* ``build_step`` - The type of the None singleton. + +* ``configure_step`` - The type of the None singleton. + * ``install_step`` - Install by copying unzipped binaries to 'bin' subdir of installation dir, and fixing permissions. @@ -37,7 +40,6 @@ easyconfig parameter|description Support for installing software that comes in binary form. Just copy the sources to the install dir, or use the specified install command. - ### Extra easyconfig parameters specific to ``Binary`` easyblock easyconfig parameter|description |default value @@ -91,7 +93,6 @@ moduleclass = 'bio' Build environment of toolchain: only generate module file - ### Extra easyconfig parameters specific to ``BuildEnv`` easyblock easyconfig parameter |description |default value @@ -104,6 +105,15 @@ easyconfig parameter |description ``sanity_check_all_components``|Enable sanity checks for all components |``False`` ``sanity_check_components`` |List of components for which to run sanity checks |``[]`` +### Customised steps in ``BuildEnv`` easyblock + +* ``build_step`` - The type of the None singleton. + +* ``configure_step`` - The type of the None singleton. + +* ``install_step`` - The type of the None singleton. + + ## ``Bundle`` (derives from ``EasyBlock``) @@ -111,7 +121,6 @@ easyconfig parameter |description Bundle of modules: only generate module files, nothing to build/install - ### Extra easyconfig parameters specific to ``Bundle`` easyblock easyconfig parameter |description |default value @@ -164,30 +173,34 @@ Support for configuring build with CMake instead of traditional configure script ### Extra easyconfig parameters specific to ``CMakeMake`` easyblock -easyconfig parameter |description |default value ---------------------------------|--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|------------------ -``abs_path_compilers`` |Specify compilers via absolute file path (not via command names) |``False`` -``allow_system_boost`` |Always allow CMake to pick up on Boost installed in OS (even if Boost is included as a dependency) |``False`` -``build_cmd`` |Build command to use |``"make"`` -``build_cmd_targets`` |Target name (string) or list of target names to build |``""`` -``build_shared_libs`` |Build shared library (instead of static library)None can be used to add no flag (usually results in static library) |``None`` -``build_type`` |Build type for CMake, e.g. Release.Defaults to 'Release' or 'Debug' depending on toolchainopts[debug] |``None`` -``configure_cmd`` |Configure command to use |``"cmake"`` -``configure_cmd_prefix`` |Prefix to be glued before ./configure |``""`` -``configure_without_installdir``|Avoid passing an install directory to the configure command (such as via --prefix) |``False`` -``generator`` |Build file generator to use. None to use CMakes default |``None`` -``host_type`` |Value to provide to --host option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script)|``None`` -``install_cmd`` |Install command to use |``"make install"`` -``install_target_subdir`` |Subdirectory to use as installation target |``None`` -``prefix_opt`` |Prefix command line option for configure script ('--prefix=' if None) |``None`` -``runtest`` |Make target to test build or True to use CTest |``None`` -``separate_build_dir`` |Perform build in a separate directory |``True`` -``srcdir`` |Source directory location to provide to cmake command |``None`` -``tar_config_opts`` |Override tar settings as determined by configure. |``False`` -``test_cmd`` |Test command to use ('runtest' value is appended, default: 'make') |``None`` +easyconfig parameter |description |default value +----------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|------------------ +``abs_path_compilers`` |Specify compilers via absolute file path (not via command names) |``False`` +``allow_system_boost`` |Always allow CMake to pick up on Boost installed in OS (even if Boost is included as a dependency) |``False`` +``build_cmd`` |Build command to use |``"make"`` +``build_cmd_targets`` |Target name (string) or list of target names to build |``""`` +``build_shared_libs`` |Build shared library (instead of static library)None can be used to add no flag (usually results in static library) |``None`` +``build_type`` |Build type for CMake, e.g. Release.Defaults to 'Release', 'RelWithDebInfo' or 'Debug' depending on toolchainopts[debug,noopt] |``None`` +``configure_cmd`` |Configure command to use |``"cmake"`` +``configure_cmd_prefix`` |Prefix to be glued before ./configure |``""`` +``configure_without_installdir`` |Avoid passing an install directory to the configure command (such as via --prefix) |``False`` +``generator`` |Build file generator to use. None to use CMakes default |``None`` +``host_type`` |Value to provide to --host option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` +``install_cmd`` |Install command to use |``"make install"`` +``install_libdir`` |Subdirectory to use for library installation files |``"lib"`` +``install_target_subdir`` |Subdirectory to use as installation target |``None`` +``prefix_opt`` |Prefix command line option for configure script ('--prefix=' if None) |``None`` +``runtest`` |Make target to test build or True to use CTest |``None`` +``separate_build_dir`` |Perform build in a separate directory |``True`` +``srcdir`` |Source directory location to provide to cmake command |``None`` +``tar_config_opts`` |Override tar settings as determined by configure. |``False`` +``test_cmd`` |Test command to use ('runtest' value is appended, default: 'make') |``None`` +``unrecognized_configure_options``|Action to do when unrecognized options passed to ./configure are detected, defaults to aborting the build. Can be set to 'warn' or 'ignore' (NOT RECOMMENDED! It might hide actual errors e.g. misspelling of intended or changed options)|``"error"`` ### Customised steps in ``CMakeMake`` easyblock +* ``build_step`` - The type of the None singleton. + * ``configure_step`` - Configure build using cmake * ``install_step`` - Configure build using cmake @@ -237,35 +250,38 @@ Software configured with CMake but without 'make install' step We use the default CMakeMake implementation, and use install_step from MakeCp. - ### Extra easyconfig parameters specific to ``CMakeMakeCp`` easyblock -easyconfig parameter |description |default value ---------------------------------|--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|------------------ -``abs_path_compilers`` |Specify compilers via absolute file path (not via command names) |``False`` -``allow_system_boost`` |Always allow CMake to pick up on Boost installed in OS (even if Boost is included as a dependency) |``False`` -``build_cmd`` |Build command to use |``"make"`` -``build_cmd_targets`` |Target name (string) or list of target names to build |``""`` -``build_shared_libs`` |Build shared library (instead of static library)None can be used to add no flag (usually results in static library) |``None`` -``build_type`` |Build type for CMake, e.g. Release.Defaults to 'Release' or 'Debug' depending on toolchainopts[debug] |``None`` -``configure_cmd`` |Configure command to use |``"cmake"`` -``configure_cmd_prefix`` |Prefix to be glued before ./configure |``""`` -``configure_without_installdir``|Avoid passing an install directory to the configure command (such as via --prefix) |``False`` -``files_to_copy`` |List of files or dirs to copy |``None`` -``generator`` |Build file generator to use. None to use CMakes default |``None`` -``host_type`` |Value to provide to --host option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script)|``None`` -``install_cmd`` |Install command to use |``"make install"`` -``install_target_subdir`` |Subdirectory to use as installation target |``None`` -``prefix_opt`` |Prefix command line option for configure script ('--prefix=' if None) |``None`` -``runtest`` |Make target to test build or True to use CTest |``None`` -``separate_build_dir`` |Perform build in a separate directory |``True`` -``srcdir`` |Source directory location to provide to cmake command |``None`` -``tar_config_opts`` |Override tar settings as determined by configure. |``False`` -``test_cmd`` |Test command to use ('runtest' value is appended, default: 'make') |``None`` -``with_configure`` |Run configure script before building |``False`` +easyconfig parameter |description |default value +----------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|------------------ +``abs_path_compilers`` |Specify compilers via absolute file path (not via command names) |``False`` +``allow_system_boost`` |Always allow CMake to pick up on Boost installed in OS (even if Boost is included as a dependency) |``False`` +``build_cmd`` |Build command to use |``"make"`` +``build_cmd_targets`` |Target name (string) or list of target names to build |``""`` +``build_shared_libs`` |Build shared library (instead of static library)None can be used to add no flag (usually results in static library) |``None`` +``build_type`` |Build type for CMake, e.g. Release.Defaults to 'Release', 'RelWithDebInfo' or 'Debug' depending on toolchainopts[debug,noopt] |``None`` +``configure_cmd`` |Configure command to use |``"cmake"`` +``configure_cmd_prefix`` |Prefix to be glued before ./configure |``""`` +``configure_without_installdir`` |Avoid passing an install directory to the configure command (such as via --prefix) |``False`` +``files_to_copy`` |List of files or dirs to copy |``None`` +``generator`` |Build file generator to use. None to use CMakes default |``None`` +``host_type`` |Value to provide to --host option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` +``install_cmd`` |Install command to use |``"make install"`` +``install_libdir`` |Subdirectory to use for library installation files |``"lib"`` +``install_target_subdir`` |Subdirectory to use as installation target |``None`` +``prefix_opt`` |Prefix command line option for configure script ('--prefix=' if None) |``None`` +``runtest`` |Make target to test build or True to use CTest |``None`` +``separate_build_dir`` |Perform build in a separate directory |``True`` +``srcdir`` |Source directory location to provide to cmake command |``None`` +``tar_config_opts`` |Override tar settings as determined by configure. |``False`` +``test_cmd`` |Test command to use ('runtest' value is appended, default: 'make') |``None`` +``unrecognized_configure_options``|Action to do when unrecognized options passed to ./configure are detected, defaults to aborting the build. Can be set to 'warn' or 'ignore' (NOT RECOMMENDED! It might hide actual errors e.g. misspelling of intended or changed options)|``"error"`` +``with_configure`` |Run configure script before building |``False`` ### Customised steps in ``CMakeMakeCp`` easyblock +* ``build_step`` - The type of the None singleton. + * ``configure_step`` - Configure build using CMake * ``install_step`` - Install by copying specified files and directories. @@ -279,28 +295,30 @@ Support for configuring with CMake, building and installing with MesonNinja. ### Extra easyconfig parameters specific to ``CMakeNinja`` easyblock -easyconfig parameter |description |default value ---------------------------------|--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|------------- -``abs_path_compilers`` |Specify compilers via absolute file path (not via command names) |``False`` -``allow_system_boost`` |Always allow CMake to pick up on Boost installed in OS (even if Boost is included as a dependency) |``False`` -``build_cmd`` |Build command to use |``"ninja"`` -``build_cmd_targets`` |Target name (string) or list of target names to build |``""`` -``build_dir`` |build_dir to pass to meson |``None`` -``build_shared_libs`` |Build shared library (instead of static library)None can be used to add no flag (usually results in static library) |``None`` -``build_type`` |Build type for CMake, e.g. Release.Defaults to 'Release' or 'Debug' depending on toolchainopts[debug] |``None`` -``configure_cmd`` |Configure command to use |``"cmake"`` -``configure_cmd_prefix`` |Prefix to be glued before ./configure |``""`` -``configure_without_installdir``|Avoid passing an install directory to the configure command (such as via --prefix) |``False`` -``generator`` |Build file generator to use. None to use CMakes default |``"Ninja"`` -``host_type`` |Value to provide to --host option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script)|``None`` -``install_cmd`` |Install command to use |``"ninja"`` -``install_target_subdir`` |Subdirectory to use as installation target |``None`` -``prefix_opt`` |Prefix command line option for configure script ('--prefix=' if None) |``None`` -``runtest`` |Make target to test build or True to use CTest |``None`` -``separate_build_dir`` |Perform build in a separate directory |``True`` -``srcdir`` |Source directory location to provide to cmake command |``None`` -``tar_config_opts`` |Override tar settings as determined by configure. |``False`` -``test_cmd`` |Test command to use ('runtest' value is appended, default: 'make') |``None`` +easyconfig parameter |description |default value +----------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|------------- +``abs_path_compilers`` |Specify compilers via absolute file path (not via command names) |``False`` +``allow_system_boost`` |Always allow CMake to pick up on Boost installed in OS (even if Boost is included as a dependency) |``False`` +``build_cmd`` |Build command to use |``"ninja"`` +``build_cmd_targets`` |Target name (string) or list of target names to build |``""`` +``build_dir`` |build_dir to pass to meson |``None`` +``build_shared_libs`` |Build shared library (instead of static library)None can be used to add no flag (usually results in static library) |``None`` +``build_type`` |Build type for meson, e.g. release.Replaces use of toolchain options debug, noopt, lowopt, opt |``None`` +``configure_cmd`` |Configure command to use |``"cmake"`` +``configure_cmd_prefix`` |Prefix to be glued before ./configure |``""`` +``configure_without_installdir`` |Avoid passing an install directory to the configure command (such as via --prefix) |``False`` +``generator`` |Build file generator to use. None to use CMakes default |``"Ninja"`` +``host_type`` |Value to provide to --host option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` +``install_cmd`` |Install command to use |``"ninja"`` +``install_libdir`` |Subdirectory to use for library installation files |``"lib"`` +``install_target_subdir`` |Subdirectory to use as installation target |``None`` +``prefix_opt`` |Prefix command line option for configure script ('--prefix=' if None) |``None`` +``runtest`` |Make target to test build or True to use CTest |``None`` +``separate_build_dir`` |Perform build in a separate directory |``True`` +``srcdir`` |Source directory location to provide to cmake command |``None`` +``tar_config_opts`` |Override tar settings as determined by configure. |``False`` +``test_cmd`` |Test command to use ('runtest' value is appended, default: 'make') |``None`` +``unrecognized_configure_options``|Action to do when unrecognized options passed to ./configure are detected, defaults to aborting the build. Can be set to 'warn' or 'ignore' (NOT RECOMMENDED! It might hide actual errors e.g. misspelling of intended or changed options)|``"error"`` ### Customised steps in ``CMakeNinja`` easyblock @@ -323,57 +341,61 @@ and then put the Python package in lib/pythonX.Y/site-packages. We use the default CMake implementation, and use make_module_extra from PythonPackage to generate a module file which sets the PYTHONPATH. - ### Extra easyconfig parameters specific to ``CMakePythonPackage`` easyblock -easyconfig parameter |description |default value ---------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|----------------------------------------------------------------------- -``abs_path_compilers`` |Specify compilers via absolute file path (not via command names) |``False`` -``allow_system_boost`` |Always allow CMake to pick up on Boost installed in OS (even if Boost is included as a dependency) |``False`` -``build_cmd`` |Build command to use |``"make"`` -``build_cmd_targets`` |Target name (string) or list of target names to build |``""`` -``build_shared_libs`` |Build shared library (instead of static library)None can be used to add no flag (usually results in static library) |``None`` -``build_type`` |Build type for CMake, e.g. Release.Defaults to 'Release' or 'Debug' depending on toolchainopts[debug] |``None`` -``buildcmd`` |Command for building the package (e.g. for custom builds resulting in a whl file). When using setup.py this will be passed to setup.py and defaults to 'build'. Otherwise it will be used as-is. A value of None then skips the build step. The template %(python)s will be replace by the currently used Python binary.|``None`` -``check_ldshared`` |Check Python value of $LDSHARED, correct if needed to "$CC -shared" |``None`` -``configure_cmd`` |Configure command to use |``"cmake"`` -``configure_cmd_prefix`` |Prefix to be glued before ./configure |``""`` -``configure_without_installdir``|Avoid passing an install directory to the configure command (such as via --prefix) |``False`` -``download_dep_fail`` |Fail if downloaded dependencies are detected |``None`` -``generator`` |Build file generator to use. None to use CMakes default |``None`` -``host_type`` |Value to provide to --host option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` -``install_cmd`` |Install command to use |``"make install"`` -``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` -``install_target`` |Option to pass to setup.py |``"install"`` -``install_target_subdir`` |Subdirectory to use as installation target |``None`` -``max_py_majver`` |Maximum major Python version (only relevant when using system Python) |``None`` -``max_py_minver`` |Maximum minor Python version (only relevant when using system Python) |``None`` -``options`` |Dictionary with extension options. |``{}`` -``pip_ignore_installed`` |Let pip ignore installed Python packages (i.e. don't remove them) |``True`` -``pip_no_index`` |Pass --no-index to pip to disable connecting to PyPi entirely which also disables the pip version check. Enabled by default when pip_ignore_installed=True |``None`` -``pip_verbose`` |Pass --verbose to 'pip install' (if pip is used). Enabled by default if the EB option --debug is used. |``None`` -``prefix_opt`` |Prefix command line option for configure script ('--prefix=' if None) |``None`` -``req_py_majver`` |Required major Python version (only relevant when using system Python) |``None`` -``req_py_minver`` |Required minor Python version (only relevant when using system Python) |``None`` -``runtest`` |Make target to test build or True to use CTest |``None`` -``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``False`` -``separate_build_dir`` |Perform build in a separate directory |``True`` -``source_urls`` |List of URLs for source files |``['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s']`` -``srcdir`` |Source directory location to provide to cmake command |``None`` -``tar_config_opts`` |Override tar settings as determined by configure. |``False`` -``test_cmd`` |Test command to use ('runtest' value is appended, default: 'make') |``None`` -``testinstall`` |Install into temporary directory prior to running the tests. |``False`` -``unpack_sources`` |Unpack sources prior to build/install. Defaults to 'True' except for whl files |``None`` -``unversioned_packages`` |List of packages that don't have a version at all, i.e. show 0.0.0 |``[]`` -``use_pip`` |Install using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``None`` -``use_pip_editable`` |Install using 'pip install --editable' |``False`` -``use_pip_extras`` |String with comma-separated list of 'extras' to install via pip |``None`` -``use_pip_for_deps`` |Install dependencies using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``False`` -``use_pip_requirement`` |Install using 'python -m pip install --requirement'. The sources is expected to be the requirements file. |``False`` -``zipped_egg`` |Install as a zipped eggs |``False`` +easyconfig parameter |description |default value +----------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|----------------------------------------------------------------------- +``abs_path_compilers`` |Specify compilers via absolute file path (not via command names) |``False`` +``allow_system_boost`` |Always allow CMake to pick up on Boost installed in OS (even if Boost is included as a dependency) |``False`` +``build_cmd`` |Build command to use |``"make"`` +``build_cmd_targets`` |Target name (string) or list of target names to build |``""`` +``build_shared_libs`` |Build shared library (instead of static library)None can be used to add no flag (usually results in static library) |``None`` +``build_type`` |Build type for CMake, e.g. Release.Defaults to 'Release', 'RelWithDebInfo' or 'Debug' depending on toolchainopts[debug,noopt] |``None`` +``buildcmd`` |Command for building the package (e.g. for custom builds resulting in a whl file). When using setup.py this will be passed to setup.py and defaults to 'build'. Otherwise it will be used as-is. A value of None then skips the build step. The template %(python)s will be replace by the currently used Python binary.|``None`` +``check_ldshared`` |Check Python value of $LDSHARED, correct if needed to "$CC -shared" |``None`` +``configure_cmd`` |Configure command to use |``"cmake"`` +``configure_cmd_prefix`` |Prefix to be glued before ./configure |``""`` +``configure_without_installdir`` |Avoid passing an install directory to the configure command (such as via --prefix) |``False`` +``download_dep_fail`` |Fail if downloaded dependencies are detected |``True`` +``fix_python_shebang_for`` |List of files for which Python shebang should be fixed to '#!/usr/bin/env python' (glob patterns supported) (default: ['bin/*']) |``['bin/*']`` +``generator`` |Build file generator to use. None to use CMakes default |``None`` +``host_type`` |Value to provide to --host option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` +``install_cmd`` |Install command to use |``"make install"`` +``install_libdir`` |Subdirectory to use for library installation files |``"lib"`` +``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` +``install_target`` |Option to pass to setup.py |``"install"`` +``install_target_subdir`` |Subdirectory to use as installation target |``None`` +``max_py_majver`` |Maximum major Python version (only relevant when using system Python) |``None`` +``max_py_minver`` |Maximum minor Python version (only relevant when using system Python) |``None`` +``options`` |Dictionary with extension options. |``{}`` +``pip_ignore_installed`` |Let pip ignore installed Python packages (i.e. don't remove them) |``True`` +``pip_no_index`` |Pass --no-index to pip to disable connecting to PyPi entirely which also disables the pip version check. Enabled by default when pip_ignore_installed=True |``None`` +``pip_verbose`` |Pass --verbose to 'pip install' (if pip is used). Enabled by default if the EB option --debug is used. |``None`` +``prefix_opt`` |Prefix command line option for configure script ('--prefix=' if None) |``None`` +``req_py_majver`` |Required major Python version (only relevant when using system Python) |``None`` +``req_py_minver`` |Required minor Python version (only relevant when using system Python) |``None`` +``runtest`` |Make target to test build or True to use CTest |``None`` +``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``True`` +``separate_build_dir`` |Perform build in a separate directory |``True`` +``source_urls`` |List of URLs for source files |``['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s']`` +``srcdir`` |Source directory location to provide to cmake command |``None`` +``tar_config_opts`` |Override tar settings as determined by configure. |``False`` +``test_cmd`` |Test command to use ('runtest' value is appended, default: 'make') |``None`` +``testinstall`` |Install into temporary directory prior to running the tests. |``False`` +``unpack_sources`` |Unpack sources prior to build/install. Defaults to 'True' except for whl files |``None`` +``unrecognized_configure_options``|Action to do when unrecognized options passed to ./configure are detected, defaults to aborting the build. Can be set to 'warn' or 'ignore' (NOT RECOMMENDED! It might hide actual errors e.g. misspelling of intended or changed options) |``"error"`` +``unversioned_packages`` |List of packages that don't have a version at all, i.e. show 0.0.0 |``[]`` +``use_pip`` |Install using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``True`` +``use_pip_editable`` |Install using 'pip install --editable' |``False`` +``use_pip_extras`` |String with comma-separated list of 'extras' to install via pip |``None`` +``use_pip_for_deps`` |Install dependencies using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``False`` +``use_pip_requirement`` |Install using 'python -m pip install --requirement'. The sources is expected to be the requirements file. |``False`` +``zipped_egg`` |Install as a zipped eggs |``False`` ### Customised steps in ``CMakePythonPackage`` easyblock +* ``build_step`` - The type of the None singleton. + * ``configure_step`` - Main configuration using cmake * ``install_step`` - Main configuration using cmake @@ -414,7 +436,6 @@ Builds just like PythonBundle with setup for Rust and crates from Cargo easybloc The cargo init step will set up the environment variables for rustc and vendor sources but all the build steps are triggered like normal. - ### Extra easyconfig parameters specific to ``CargoPythonBundle`` easyblock easyconfig parameter |description |default value @@ -426,9 +447,10 @@ easyconfig parameter |description ``components`` |List of components to install: tuples w/ name, version and easyblock to use |``()`` ``crates`` |List of (crate, version, [repo, rev]) tuples to use |``[]`` ``default_component_specs`` |Default specs to use for every component |``{}`` -``default_easyblock`` |Default easyblock to use for components |``None`` -``download_dep_fail`` |Fail if downloaded dependencies are detected |``None`` +``default_easyblock`` |Default easyblock to use for components |``"PythonPackage"`` +``download_dep_fail`` |Fail if downloaded dependencies are detected |``True`` ``enable_tests`` |Enable building of tests |``True`` +``fix_python_shebang_for`` |List of files for which Python shebang should be fixed to '#!/usr/bin/env python' (glob patterns supported) (default: ['bin/*']) |``['bin/*']`` ``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` ``install_target`` |Option to pass to setup.py |``"install"`` ``lto`` |Override default LTO flag ('fat', 'thin', 'off') |``None`` @@ -444,18 +466,27 @@ easyconfig parameter |description ``runtest`` |Run unit tests. |``True`` ``sanity_check_all_components``|Enable sanity checks for all components |``False`` ``sanity_check_components`` |List of components for which to run sanity checks |``[]`` -``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``False`` +``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``True`` ``source_urls`` |List of URLs for source files |``['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s']`` ``testinstall`` |Install into temporary directory prior to running the tests. |``False`` ``unpack_sources`` |Unpack sources prior to build/install. Defaults to 'True' except for whl files |``None`` ``unversioned_packages`` |List of packages that don't have a version at all, i.e. show 0.0.0 |``[]`` -``use_pip`` |Install using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``None`` +``use_pip`` |Install using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``True`` ``use_pip_editable`` |Install using 'pip install --editable' |``False`` ``use_pip_extras`` |String with comma-separated list of 'extras' to install via pip |``None`` ``use_pip_for_deps`` |Install dependencies using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``False`` ``use_pip_requirement`` |Install using 'python -m pip install --requirement'. The sources is expected to be the requirements file. |``False`` ``zipped_egg`` |Install as a zipped eggs |``False`` +### Customised steps in ``CargoPythonBundle`` easyblock + +* ``build_step`` - The type of the None singleton. + +* ``configure_step`` - The type of the None singleton. + +* ``install_step`` - The type of the None singleton. + + ## ``CargoPythonPackage`` (derives from [``PythonPackage``](#pythonpackage), [``Cargo``](#cargo)) @@ -465,40 +496,49 @@ Build a Python package with setup from Cargo but build/install step from PythonP The cargo init step will set up the environment variables for rustc and vendor sources but all the build steps are triggered via normal PythonPackage steps like normal. - ### Extra easyconfig parameters specific to ``CargoPythonPackage`` easyblock -easyconfig parameter |description |default value -------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|----------------------------------------------------------------------- -``buildcmd`` |Command for building the package (e.g. for custom builds resulting in a whl file). When using setup.py this will be passed to setup.py and defaults to 'build'. Otherwise it will be used as-is. A value of None then skips the build step. The template %(python)s will be replace by the currently used Python binary.|``None`` -``check_ldshared`` |Check Python value of $LDSHARED, correct if needed to "$CC -shared" |``None`` -``crates`` |List of (crate, version, [repo, rev]) tuples to use |``[]`` -``download_dep_fail`` |Fail if downloaded dependencies are detected |``None`` -``enable_tests`` |Enable building of tests |``True`` -``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` -``install_target`` |Option to pass to setup.py |``"install"`` -``lto`` |Override default LTO flag ('fat', 'thin', 'off') |``None`` -``max_py_majver`` |Maximum major Python version (only relevant when using system Python) |``None`` -``max_py_minver`` |Maximum minor Python version (only relevant when using system Python) |``None`` -``offline`` |Build offline |``True`` -``options`` |Dictionary with extension options. |``{}`` -``pip_ignore_installed``|Let pip ignore installed Python packages (i.e. don't remove them) |``True`` -``pip_no_index`` |Pass --no-index to pip to disable connecting to PyPi entirely which also disables the pip version check. Enabled by default when pip_ignore_installed=True |``None`` -``pip_verbose`` |Pass --verbose to 'pip install' (if pip is used). Enabled by default if the EB option --debug is used. |``None`` -``req_py_majver`` |Required major Python version (only relevant when using system Python) |``None`` -``req_py_minver`` |Required minor Python version (only relevant when using system Python) |``None`` -``runtest`` |Run unit tests. |``True`` -``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``False`` -``source_urls`` |List of URLs for source files |``['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s']`` -``testinstall`` |Install into temporary directory prior to running the tests. |``False`` -``unpack_sources`` |Unpack sources prior to build/install. Defaults to 'True' except for whl files |``None`` -``unversioned_packages``|List of packages that don't have a version at all, i.e. show 0.0.0 |``[]`` -``use_pip`` |Install using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``None`` -``use_pip_editable`` |Install using 'pip install --editable' |``False`` -``use_pip_extras`` |String with comma-separated list of 'extras' to install via pip |``None`` -``use_pip_for_deps`` |Install dependencies using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``False`` -``use_pip_requirement`` |Install using 'python -m pip install --requirement'. The sources is expected to be the requirements file. |``False`` -``zipped_egg`` |Install as a zipped eggs |``False`` +easyconfig parameter |description |default value +--------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|----------------------------------------------------------------------- +``buildcmd`` |Command for building the package (e.g. for custom builds resulting in a whl file). When using setup.py this will be passed to setup.py and defaults to 'build'. Otherwise it will be used as-is. A value of None then skips the build step. The template %(python)s will be replace by the currently used Python binary.|``None`` +``check_ldshared`` |Check Python value of $LDSHARED, correct if needed to "$CC -shared" |``None`` +``crates`` |List of (crate, version, [repo, rev]) tuples to use |``[]`` +``download_dep_fail`` |Fail if downloaded dependencies are detected |``True`` +``enable_tests`` |Enable building of tests |``True`` +``fix_python_shebang_for``|List of files for which Python shebang should be fixed to '#!/usr/bin/env python' (glob patterns supported) (default: ['bin/*']) |``['bin/*']`` +``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` +``install_target`` |Option to pass to setup.py |``"install"`` +``lto`` |Override default LTO flag ('fat', 'thin', 'off') |``None`` +``max_py_majver`` |Maximum major Python version (only relevant when using system Python) |``None`` +``max_py_minver`` |Maximum minor Python version (only relevant when using system Python) |``None`` +``offline`` |Build offline |``True`` +``options`` |Dictionary with extension options. |``{}`` +``pip_ignore_installed`` |Let pip ignore installed Python packages (i.e. don't remove them) |``True`` +``pip_no_index`` |Pass --no-index to pip to disable connecting to PyPi entirely which also disables the pip version check. Enabled by default when pip_ignore_installed=True |``None`` +``pip_verbose`` |Pass --verbose to 'pip install' (if pip is used). Enabled by default if the EB option --debug is used. |``None`` +``req_py_majver`` |Required major Python version (only relevant when using system Python) |``None`` +``req_py_minver`` |Required minor Python version (only relevant when using system Python) |``None`` +``runtest`` |Run unit tests. |``True`` +``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``True`` +``source_urls`` |List of URLs for source files |``['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s']`` +``testinstall`` |Install into temporary directory prior to running the tests. |``False`` +``unpack_sources`` |Unpack sources prior to build/install. Defaults to 'True' except for whl files |``None`` +``unversioned_packages`` |List of packages that don't have a version at all, i.e. show 0.0.0 |``[]`` +``use_pip`` |Install using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``True`` +``use_pip_editable`` |Install using 'pip install --editable' |``False`` +``use_pip_extras`` |String with comma-separated list of 'extras' to install via pip |``None`` +``use_pip_for_deps`` |Install dependencies using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``False`` +``use_pip_requirement`` |Install using 'python -m pip install --requirement'. The sources is expected to be the requirements file. |``False`` +``zipped_egg`` |Install as a zipped eggs |``False`` + +### Customised steps in ``CargoPythonPackage`` easyblock + +* ``build_step`` - The type of the None singleton. + +* ``configure_step`` - The type of the None singleton. + +* ``install_step`` - The type of the None singleton. + ## ``CmdCp`` @@ -508,25 +548,25 @@ easyconfig parameter |description Software with no configure, no make, and no make install step. Just run the specified command for all sources, and copy specified files to the install dir - ### Extra easyconfig parameters specific to ``CmdCp`` easyblock -easyconfig parameter |description |default value ---------------------------------|---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|---------------------------------------------------- -``build_cmd`` |Build command to use |``"make"`` -``build_cmd_targets`` |Target name (string) or list of target names to build |``""`` -``build_type`` |Value to provide to --build option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script)|``None`` -``cmds_map`` |List of regex/template command (with 'source'/'target' fields) tuples |``[('.*', '$CC $CFLAGS %(source)s -o %(target)s')]`` -``configure_cmd`` |Configure command to use |``"./configure"`` -``configure_cmd_prefix`` |Prefix to be glued before ./configure |``""`` -``configure_without_installdir``|Avoid passing an install directory to the configure command (such as via --prefix) |``False`` -``files_to_copy`` |List of files or dirs to copy |``None`` -``host_type`` |Value to provide to --host option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` -``install_cmd`` |Install command to use |``"make install"`` -``prefix_opt`` |Prefix command line option for configure script ('--prefix=' if None) |``None`` -``tar_config_opts`` |Override tar settings as determined by configure. |``False`` -``test_cmd`` |Test command to use ('runtest' value is appended, default: 'make') |``None`` -``with_configure`` |Run configure script before building |``False`` +easyconfig parameter |description |default value +----------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|---------------------------------------------------- +``build_cmd`` |Build command to use |``"make"`` +``build_cmd_targets`` |Target name (string) or list of target names to build |``""`` +``build_type`` |Value to provide to --build option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` +``cmds_map`` |List of regex/template command (with 'source'/'target' fields) tuples |``[('.*', '$CC $CFLAGS %(source)s -o %(target)s')]`` +``configure_cmd`` |Configure command to use |``"./configure"`` +``configure_cmd_prefix`` |Prefix to be glued before ./configure |``""`` +``configure_without_installdir`` |Avoid passing an install directory to the configure command (such as via --prefix) |``False`` +``files_to_copy`` |List of files or dirs to copy |``None`` +``host_type`` |Value to provide to --host option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` +``install_cmd`` |Install command to use |``"make install"`` +``prefix_opt`` |Prefix command line option for configure script ('--prefix=' if None) |``None`` +``tar_config_opts`` |Override tar settings as determined by configure. |``False`` +``test_cmd`` |Test command to use ('runtest' value is appended, default: 'make') |``None`` +``unrecognized_configure_options``|Action to do when unrecognized options passed to ./configure are detected, defaults to aborting the build. Can be set to 'warn' or 'ignore' (NOT RECOMMENDED! It might hide actual errors e.g. misspelling of intended or changed options)|``"error"`` +``with_configure`` |Run configure script before building |``False`` ### Customised steps in ``CmdCp`` easyblock @@ -559,8 +599,12 @@ easyconfig parameter |description ### Customised steps in ``Conda`` easyblock +* ``build_step`` - The type of the None singleton. + +* ``configure_step`` - The type of the None singleton. + * ``install_step`` - Install software using 'conda env create' or 'conda create' & 'conda install' - (or the 'mamba', etc., equivalent). +(or the 'mamba', etc., equivalent). ## ``ConfigureMake`` @@ -570,22 +614,22 @@ easyconfig parameter |description Support for building and installing applications with configure/make/make install - ### Extra easyconfig parameters specific to ``ConfigureMake`` easyblock -easyconfig parameter |description |default value ---------------------------------|---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|------------------ -``build_cmd`` |Build command to use |``"make"`` -``build_cmd_targets`` |Target name (string) or list of target names to build |``""`` -``build_type`` |Value to provide to --build option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script)|``None`` -``configure_cmd`` |Configure command to use |``"./configure"`` -``configure_cmd_prefix`` |Prefix to be glued before ./configure |``""`` -``configure_without_installdir``|Avoid passing an install directory to the configure command (such as via --prefix) |``False`` -``host_type`` |Value to provide to --host option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` -``install_cmd`` |Install command to use |``"make install"`` -``prefix_opt`` |Prefix command line option for configure script ('--prefix=' if None) |``None`` -``tar_config_opts`` |Override tar settings as determined by configure. |``False`` -``test_cmd`` |Test command to use ('runtest' value is appended, default: 'make') |``None`` +easyconfig parameter |description |default value +----------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|------------------ +``build_cmd`` |Build command to use |``"make"`` +``build_cmd_targets`` |Target name (string) or list of target names to build |``""`` +``build_type`` |Value to provide to --build option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` +``configure_cmd`` |Configure command to use |``"./configure"`` +``configure_cmd_prefix`` |Prefix to be glued before ./configure |``""`` +``configure_without_installdir`` |Avoid passing an install directory to the configure command (such as via --prefix) |``False`` +``host_type`` |Value to provide to --host option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` +``install_cmd`` |Install command to use |``"make install"`` +``prefix_opt`` |Prefix command line option for configure script ('--prefix=' if None) |``None`` +``tar_config_opts`` |Override tar settings as determined by configure. |``False`` +``test_cmd`` |Test command to use ('runtest' value is appended, default: 'make') |``None`` +``unrecognized_configure_options``|Action to do when unrecognized options passed to ./configure are detected, defaults to aborting the build. Can be set to 'warn' or 'ignore' (NOT RECOMMENDED! It might hide actual errors e.g. misspelling of intended or changed options)|``"error"`` ### Commonly used easyconfig parameters with ``ConfigureMake`` easyblock @@ -598,13 +642,13 @@ installopts |Extra options for installation ### Customised steps in ``ConfigureMake`` easyblock * ``build_step`` - Start the actual build - - typical: make -j X +- typical: make -j X * ``configure_step`` - Configure step - - typically ./configure --prefix=/install/path style +- typically ./configure --prefix=/install/path style * ``install_step`` - Create the installation in correct location - - typical: make install +- typical: make install ### Example easyconfig for ``ConfigureMake`` easyblock @@ -645,47 +689,48 @@ Implemented by using: - using the build_step and install_step from ConfigureMake - using the sanity_check_step and make_module_extra from PythonPackage - ### Extra easyconfig parameters specific to ``ConfigureMakePythonPackage`` easyblock -easyconfig parameter |description |default value ---------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|----------------------------------------------------------------------- -``build_cmd`` |Build command to use |``"make"`` -``build_cmd_targets`` |Target name (string) or list of target names to build |``""`` -``build_type`` |Value to provide to --build option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` -``buildcmd`` |Command for building the package (e.g. for custom builds resulting in a whl file). When using setup.py this will be passed to setup.py and defaults to 'build'. Otherwise it will be used as-is. A value of None then skips the build step. The template %(python)s will be replace by the currently used Python binary.|``None`` -``check_ldshared`` |Check Python value of $LDSHARED, correct if needed to "$CC -shared" |``None`` -``configure_cmd`` |Configure command to use |``"./configure"`` -``configure_cmd_prefix`` |Prefix to be glued before ./configure |``""`` -``configure_without_installdir``|Avoid passing an install directory to the configure command (such as via --prefix) |``False`` -``download_dep_fail`` |Fail if downloaded dependencies are detected |``None`` -``host_type`` |Value to provide to --host option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` -``install_cmd`` |Install command to use |``"make install"`` -``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` -``install_target`` |Option to pass to setup.py |``"install"`` -``max_py_majver`` |Maximum major Python version (only relevant when using system Python) |``None`` -``max_py_minver`` |Maximum minor Python version (only relevant when using system Python) |``None`` -``options`` |Dictionary with extension options. |``{}`` -``pip_ignore_installed`` |Let pip ignore installed Python packages (i.e. don't remove them) |``True`` -``pip_no_index`` |Pass --no-index to pip to disable connecting to PyPi entirely which also disables the pip version check. Enabled by default when pip_ignore_installed=True |``None`` -``pip_verbose`` |Pass --verbose to 'pip install' (if pip is used). Enabled by default if the EB option --debug is used. |``None`` -``prefix_opt`` |Prefix command line option for configure script ('--prefix=' if None) |``None`` -``req_py_majver`` |Required major Python version (only relevant when using system Python) |``None`` -``req_py_minver`` |Required minor Python version (only relevant when using system Python) |``None`` -``runtest`` |Run unit tests. |``True`` -``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``False`` -``source_urls`` |List of URLs for source files |``['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s']`` -``tar_config_opts`` |Override tar settings as determined by configure. |``False`` -``test_cmd`` |Test command to use ('runtest' value is appended, default: 'make') |``None`` -``testinstall`` |Install into temporary directory prior to running the tests. |``False`` -``unpack_sources`` |Unpack sources prior to build/install. Defaults to 'True' except for whl files |``None`` -``unversioned_packages`` |List of packages that don't have a version at all, i.e. show 0.0.0 |``[]`` -``use_pip`` |Install using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``None`` -``use_pip_editable`` |Install using 'pip install --editable' |``False`` -``use_pip_extras`` |String with comma-separated list of 'extras' to install via pip |``None`` -``use_pip_for_deps`` |Install dependencies using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``False`` -``use_pip_requirement`` |Install using 'python -m pip install --requirement'. The sources is expected to be the requirements file. |``False`` -``zipped_egg`` |Install as a zipped eggs |``False`` +easyconfig parameter |description |default value +----------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|----------------------------------------------------------------------- +``build_cmd`` |Build command to use |``"make"`` +``build_cmd_targets`` |Target name (string) or list of target names to build |``""`` +``build_type`` |Value to provide to --build option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` +``buildcmd`` |Command for building the package (e.g. for custom builds resulting in a whl file). When using setup.py this will be passed to setup.py and defaults to 'build'. Otherwise it will be used as-is. A value of None then skips the build step. The template %(python)s will be replace by the currently used Python binary.|``None`` +``check_ldshared`` |Check Python value of $LDSHARED, correct if needed to "$CC -shared" |``None`` +``configure_cmd`` |Configure command to use |``"./configure"`` +``configure_cmd_prefix`` |Prefix to be glued before ./configure |``""`` +``configure_without_installdir`` |Avoid passing an install directory to the configure command (such as via --prefix) |``False`` +``download_dep_fail`` |Fail if downloaded dependencies are detected |``True`` +``fix_python_shebang_for`` |List of files for which Python shebang should be fixed to '#!/usr/bin/env python' (glob patterns supported) (default: ['bin/*']) |``['bin/*']`` +``host_type`` |Value to provide to --host option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` +``install_cmd`` |Install command to use |``"make install"`` +``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` +``install_target`` |Option to pass to setup.py |``"install"`` +``max_py_majver`` |Maximum major Python version (only relevant when using system Python) |``None`` +``max_py_minver`` |Maximum minor Python version (only relevant when using system Python) |``None`` +``options`` |Dictionary with extension options. |``{}`` +``pip_ignore_installed`` |Let pip ignore installed Python packages (i.e. don't remove them) |``True`` +``pip_no_index`` |Pass --no-index to pip to disable connecting to PyPi entirely which also disables the pip version check. Enabled by default when pip_ignore_installed=True |``None`` +``pip_verbose`` |Pass --verbose to 'pip install' (if pip is used). Enabled by default if the EB option --debug is used. |``None`` +``prefix_opt`` |Prefix command line option for configure script ('--prefix=' if None) |``None`` +``req_py_majver`` |Required major Python version (only relevant when using system Python) |``None`` +``req_py_minver`` |Required minor Python version (only relevant when using system Python) |``None`` +``runtest`` |Run unit tests. |``True`` +``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``True`` +``source_urls`` |List of URLs for source files |``['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s']`` +``tar_config_opts`` |Override tar settings as determined by configure. |``False`` +``test_cmd`` |Test command to use ('runtest' value is appended, default: 'make') |``None`` +``testinstall`` |Install into temporary directory prior to running the tests. |``False`` +``unpack_sources`` |Unpack sources prior to build/install. Defaults to 'True' except for whl files |``None`` +``unrecognized_configure_options``|Action to do when unrecognized options passed to ./configure are detected, defaults to aborting the build. Can be set to 'warn' or 'ignore' (NOT RECOMMENDED! It might hide actual errors e.g. misspelling of intended or changed options) |``"error"`` +``unversioned_packages`` |List of packages that don't have a version at all, i.e. show 0.0.0 |``[]`` +``use_pip`` |Install using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``True`` +``use_pip_editable`` |Install using 'pip install --editable' |``False`` +``use_pip_extras`` |String with comma-separated list of 'extras' to install via pip |``None`` +``use_pip_for_deps`` |Install dependencies using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``False`` +``use_pip_requirement`` |Install using 'python -m pip install --requirement'. The sources is expected to be the requirements file. |``False`` +``zipped_egg`` |Install as a zipped eggs |``False`` ### Customised steps in ``ConfigureMakePythonPackage`` easyblock @@ -738,7 +783,6 @@ moduleclass = 'vis' Compiler toolchain: generate module file only, nothing to build/install - ### Extra easyconfig parameters specific to ``CrayToolchain`` easyblock easyconfig parameter |description |default value @@ -751,6 +795,15 @@ easyconfig parameter |description ``sanity_check_all_components``|Enable sanity checks for all components |``False`` ``sanity_check_components`` |List of components for which to run sanity checks |``[]`` +### Customised steps in ``CrayToolchain`` easyblock + +* ``build_step`` - The type of the None singleton. + +* ``configure_step`` - The type of the None singleton. + +* ``install_step`` - The type of the None singleton. + + ## ``FortranPythonPackage`` (derives from [``PythonPackage``](#pythonpackage)) @@ -759,33 +812,34 @@ Extends PythonPackage to add a Fortran compiler to the make call ### Extra easyconfig parameters specific to ``FortranPythonPackage`` easyblock -easyconfig parameter |description |default value -------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|----------------------------------------------------------------------- -``buildcmd`` |Command for building the package (e.g. for custom builds resulting in a whl file). When using setup.py this will be passed to setup.py and defaults to 'build'. Otherwise it will be used as-is. A value of None then skips the build step. The template %(python)s will be replace by the currently used Python binary.|``None`` -``check_ldshared`` |Check Python value of $LDSHARED, correct if needed to "$CC -shared" |``None`` -``download_dep_fail`` |Fail if downloaded dependencies are detected |``None`` -``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` -``install_target`` |Option to pass to setup.py |``"install"`` -``max_py_majver`` |Maximum major Python version (only relevant when using system Python) |``None`` -``max_py_minver`` |Maximum minor Python version (only relevant when using system Python) |``None`` -``options`` |Dictionary with extension options. |``{}`` -``pip_ignore_installed``|Let pip ignore installed Python packages (i.e. don't remove them) |``True`` -``pip_no_index`` |Pass --no-index to pip to disable connecting to PyPi entirely which also disables the pip version check. Enabled by default when pip_ignore_installed=True |``None`` -``pip_verbose`` |Pass --verbose to 'pip install' (if pip is used). Enabled by default if the EB option --debug is used. |``None`` -``req_py_majver`` |Required major Python version (only relevant when using system Python) |``None`` -``req_py_minver`` |Required minor Python version (only relevant when using system Python) |``None`` -``runtest`` |Run unit tests. |``True`` -``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``False`` -``source_urls`` |List of URLs for source files |``['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s']`` -``testinstall`` |Install into temporary directory prior to running the tests. |``False`` -``unpack_sources`` |Unpack sources prior to build/install. Defaults to 'True' except for whl files |``None`` -``unversioned_packages``|List of packages that don't have a version at all, i.e. show 0.0.0 |``[]`` -``use_pip`` |Install using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``None`` -``use_pip_editable`` |Install using 'pip install --editable' |``False`` -``use_pip_extras`` |String with comma-separated list of 'extras' to install via pip |``None`` -``use_pip_for_deps`` |Install dependencies using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``False`` -``use_pip_requirement`` |Install using 'python -m pip install --requirement'. The sources is expected to be the requirements file. |``False`` -``zipped_egg`` |Install as a zipped eggs |``False`` +easyconfig parameter |description |default value +--------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|----------------------------------------------------------------------- +``buildcmd`` |Command for building the package (e.g. for custom builds resulting in a whl file). When using setup.py this will be passed to setup.py and defaults to 'build'. Otherwise it will be used as-is. A value of None then skips the build step. The template %(python)s will be replace by the currently used Python binary.|``None`` +``check_ldshared`` |Check Python value of $LDSHARED, correct if needed to "$CC -shared" |``None`` +``download_dep_fail`` |Fail if downloaded dependencies are detected |``True`` +``fix_python_shebang_for``|List of files for which Python shebang should be fixed to '#!/usr/bin/env python' (glob patterns supported) (default: ['bin/*']) |``['bin/*']`` +``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` +``install_target`` |Option to pass to setup.py |``"install"`` +``max_py_majver`` |Maximum major Python version (only relevant when using system Python) |``None`` +``max_py_minver`` |Maximum minor Python version (only relevant when using system Python) |``None`` +``options`` |Dictionary with extension options. |``{}`` +``pip_ignore_installed`` |Let pip ignore installed Python packages (i.e. don't remove them) |``True`` +``pip_no_index`` |Pass --no-index to pip to disable connecting to PyPi entirely which also disables the pip version check. Enabled by default when pip_ignore_installed=True |``None`` +``pip_verbose`` |Pass --verbose to 'pip install' (if pip is used). Enabled by default if the EB option --debug is used. |``None`` +``req_py_majver`` |Required major Python version (only relevant when using system Python) |``None`` +``req_py_minver`` |Required minor Python version (only relevant when using system Python) |``None`` +``runtest`` |Run unit tests. |``True`` +``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``True`` +``source_urls`` |List of URLs for source files |``['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s']`` +``testinstall`` |Install into temporary directory prior to running the tests. |``False`` +``unpack_sources`` |Unpack sources prior to build/install. Defaults to 'True' except for whl files |``None`` +``unversioned_packages`` |List of packages that don't have a version at all, i.e. show 0.0.0 |``[]`` +``use_pip`` |Install using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``True`` +``use_pip_editable`` |Install using 'pip install --editable' |``False`` +``use_pip_extras`` |String with comma-separated list of 'extras' to install via pip |``None`` +``use_pip_for_deps`` |Install dependencies using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``False`` +``use_pip_requirement`` |Install using 'python -m pip install --requirement'. The sources is expected to be the requirements file. |``False`` +``zipped_egg`` |Install as a zipped eggs |``False`` ### Customised steps in ``FortranPythonPackage`` easyblock @@ -828,17 +882,14 @@ Base class for Intel software - no configure/make : binary release - add license_file variable - ### Extra easyconfig parameters specific to ``IntelBase`` easyblock easyconfig parameter |description |default value ----------------------------|---------------------------------------------------------------|-------------------- ``components`` |List of components to install |``None`` ``license_activation`` |License activation type |``"license_server"`` -``m32`` |Enable 32-bit toolchain |``False`` ``requires_runtime_license``|Boolean indicating whether or not a runtime license is required|``True`` ``serial_number`` |Serial number for the product |``None`` -``usetmppath`` |Use temporary path for installation |``False`` ### Customised steps in ``IntelBase`` easyblock @@ -865,6 +916,15 @@ easyconfig parameter|description ``prepend_to_path`` |Prepend the given directories (relative to install-dir) to the environment variable PATH in the module file. Default is the install-dir itself.|``['']`` ``staged_install`` |Perform staged installation via subdirectory of build directory |``False`` +### Customised steps in ``JAR`` easyblock + +* ``build_step`` - The type of the None singleton. + +* ``configure_step`` - The type of the None singleton. + +* ``install_step`` - The type of the None singleton. + + ## ``JuliaBundle`` (derives from [``Bundle``](#bundle), [``JuliaPackage``](#juliapackage)) @@ -873,7 +933,6 @@ easyconfig parameter|description Bundle of JuliaPackages: install Julia packages as extensions in a bundle Defines custom sanity checks and module environment - ### Extra easyconfig parameters specific to ``JuliaBundle`` easyblock easyconfig parameter |description |default value @@ -890,6 +949,10 @@ easyconfig parameter |description ### Customised steps in ``JuliaBundle`` easyblock +* ``build_step`` - The type of the None singleton. + +* ``configure_step`` - The type of the None singleton. + * ``install_step`` - Prepare installation environment and dd all dependencies to project environment. @@ -917,7 +980,6 @@ provided by the module. Effectively, this translates to: - append installation directory to list of DEPOT_PATH, only really needed to load artifacts (JLL packages) - append installation Project.toml file to list of LOAD_PATH, needed to load packages with `using` command - ### Extra easyconfig parameters specific to ``JuliaPackage`` easyblock easyconfig parameter |description |default value @@ -941,27 +1003,29 @@ easyconfig parameter |description Software with no configure and no make install step. - ### Extra easyconfig parameters specific to ``MakeCp`` easyblock -easyconfig parameter |description |default value ---------------------------------|---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|------------------ -``build_cmd`` |Build command to use |``"make"`` -``build_cmd_targets`` |Target name (string) or list of target names to build |``""`` -``build_type`` |Value to provide to --build option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script)|``None`` -``configure_cmd`` |Configure command to use |``"./configure"`` -``configure_cmd_prefix`` |Prefix to be glued before ./configure |``""`` -``configure_without_installdir``|Avoid passing an install directory to the configure command (such as via --prefix) |``False`` -``files_to_copy`` |List of files or dirs to copy |``None`` -``host_type`` |Value to provide to --host option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` -``install_cmd`` |Install command to use |``"make install"`` -``prefix_opt`` |Prefix command line option for configure script ('--prefix=' if None) |``None`` -``tar_config_opts`` |Override tar settings as determined by configure. |``False`` -``test_cmd`` |Test command to use ('runtest' value is appended, default: 'make') |``None`` -``with_configure`` |Run configure script before building |``False`` +easyconfig parameter |description |default value +----------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|------------------ +``build_cmd`` |Build command to use |``"make"`` +``build_cmd_targets`` |Target name (string) or list of target names to build |``""`` +``build_type`` |Value to provide to --build option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` +``configure_cmd`` |Configure command to use |``"./configure"`` +``configure_cmd_prefix`` |Prefix to be glued before ./configure |``""`` +``configure_without_installdir`` |Avoid passing an install directory to the configure command (such as via --prefix) |``False`` +``files_to_copy`` |List of files or dirs to copy |``None`` +``host_type`` |Value to provide to --host option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` +``install_cmd`` |Install command to use |``"make install"`` +``prefix_opt`` |Prefix command line option for configure script ('--prefix=' if None) |``None`` +``tar_config_opts`` |Override tar settings as determined by configure. |``False`` +``test_cmd`` |Test command to use ('runtest' value is appended, default: 'make') |``None`` +``unrecognized_configure_options``|Action to do when unrecognized options passed to ./configure are detected, defaults to aborting the build. Can be set to 'warn' or 'ignore' (NOT RECOMMENDED! It might hide actual errors e.g. misspelling of intended or changed options)|``"error"`` +``with_configure`` |Run configure script before building |``False`` ### Customised steps in ``MakeCp`` easyblock +* ``build_step`` - The type of the None singleton. + * ``configure_step`` - Configure build if required * ``install_step`` - Install by copying specified files and directories. @@ -974,16 +1038,17 @@ easyconfig parameter |description Support for building and installing software with 'meson' and 'ninja'. - ### Extra easyconfig parameters specific to ``MesonNinja`` easyblock -easyconfig parameter |description |default value -----------------------|-------------------------------------|------------- -``build_cmd`` |Build command to use |``"ninja"`` -``build_dir`` |build_dir to pass to meson |``None`` -``configure_cmd`` |Configure command to use |``"meson"`` -``install_cmd`` |Install command to use |``"ninja"`` -``separate_build_dir``|Perform build in a separate directory|``True`` +easyconfig parameter |description |default value +----------------------|---------------------------------------------------------------------------------------------------------------------------|------------- +``build_cmd`` |Build command to use |``"ninja"`` +``build_dir`` |build_dir to pass to meson |``None`` +``build_type`` |Build type for meson, e.g. release.Replaces use of toolchain options debug, noopt, lowopt, opt |``None`` +``configure_cmd`` |Configure command to use |``"meson"`` +``install_cmd`` |Install command to use |``"ninja"`` +``ndebug`` |Sets -Db_ndebug which in turn defines NDEBUG for C/C++ builds.This disabled costly asserts in code, typical for production.|``True`` +``separate_build_dir``|Perform build in a separate directory |``True`` ### Customised steps in ``MesonNinja`` easyblock @@ -1001,7 +1066,6 @@ easyconfig parameter |description |default value Generic easyblock to create a software-specific .modulerc file - ### Extra easyconfig parameters specific to ``ModuleRC`` easyblock easyconfig parameter|description |default value @@ -1031,6 +1095,8 @@ easyconfig parameter|description |default value ### Customised steps in ``OCamlPackage`` easyblock +* ``build_step`` - The type of the None singleton. + * ``configure_step`` - Raise error when configure step is run: installing OCaml packages stand-alone is not supported (yet) * ``install_step`` - Raise error when configure step is run: installing OCaml packages stand-alone is not supported (yet) @@ -1050,6 +1116,8 @@ easyconfig parameter|description |default value ### Customised steps in ``OctavePackage`` easyblock +* ``build_step`` - The type of the None singleton. + * ``configure_step`` - Raise error when configure step is run: installing Octave toolboxes stand-alone is not supported (yet) * ``install_step`` - Raise error when configure step is run: installing Octave toolboxes stand-alone is not supported (yet) @@ -1062,7 +1130,6 @@ easyconfig parameter|description |default value Support for installing packed binary software. Just unpack the sources in the install dir - ### Extra easyconfig parameters specific to ``PackedBinary`` easyblock easyconfig parameter|description |default value @@ -1075,6 +1142,10 @@ easyconfig parameter|description ### Customised steps in ``PackedBinary`` easyblock +* ``build_step`` - The type of the None singleton. + +* ``configure_step`` - The type of the None singleton. + * ``install_step`` - Copy all unpacked source directories to install directory, one-by-one. @@ -1085,7 +1156,6 @@ easyconfig parameter|description Bundle of perl modules - ### Extra easyconfig parameters specific to ``PerlBundle`` easyblock easyconfig parameter |description |default value @@ -1101,6 +1171,15 @@ easyconfig parameter |description ``sanity_check_all_components``|Enable sanity checks for all components |``False`` ``sanity_check_components`` |List of components for which to run sanity checks |``[]`` +### Customised steps in ``PerlBundle`` easyblock + +* ``build_step`` - The type of the None singleton. + +* ``configure_step`` - The type of the None singleton. + +* ``install_step`` - The type of the None singleton. + + ## ``PerlModule`` (derives from ``ExtensionEasyBlock``, [``ConfigureMake``](#configuremake)) @@ -1132,7 +1211,6 @@ easyconfig parameter|description Bundle of PythonPackages: install Python packages as extensions in a bundle Defines custom sanity checks and module environment - ### Extra easyconfig parameters specific to ``PythonBundle`` easyblock easyconfig parameter |description |default value @@ -1143,8 +1221,9 @@ easyconfig parameter |description ``check_ldshared`` |Check Python value of $LDSHARED, correct if needed to "$CC -shared" |``None`` ``components`` |List of components to install: tuples w/ name, version and easyblock to use |``()`` ``default_component_specs`` |Default specs to use for every component |``{}`` -``default_easyblock`` |Default easyblock to use for components |``None`` -``download_dep_fail`` |Fail if downloaded dependencies are detected |``None`` +``default_easyblock`` |Default easyblock to use for components |``"PythonPackage"`` +``download_dep_fail`` |Fail if downloaded dependencies are detected |``True`` +``fix_python_shebang_for`` |List of files for which Python shebang should be fixed to '#!/usr/bin/env python' (glob patterns supported) (default: ['bin/*']) |``['bin/*']`` ``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` ``install_target`` |Option to pass to setup.py |``"install"`` ``max_py_majver`` |Maximum major Python version (only relevant when using system Python) |``None`` @@ -1158,18 +1237,27 @@ easyconfig parameter |description ``runtest`` |Run unit tests. |``True`` ``sanity_check_all_components``|Enable sanity checks for all components |``False`` ``sanity_check_components`` |List of components for which to run sanity checks |``[]`` -``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``False`` +``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``True`` ``source_urls`` |List of URLs for source files |``['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s']`` ``testinstall`` |Install into temporary directory prior to running the tests. |``False`` ``unpack_sources`` |Unpack sources prior to build/install. Defaults to 'True' except for whl files |``None`` ``unversioned_packages`` |List of packages that don't have a version at all, i.e. show 0.0.0 |``[]`` -``use_pip`` |Install using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``None`` +``use_pip`` |Install using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``True`` ``use_pip_editable`` |Install using 'pip install --editable' |``False`` ``use_pip_extras`` |String with comma-separated list of 'extras' to install via pip |``None`` ``use_pip_for_deps`` |Install dependencies using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``False`` ``use_pip_requirement`` |Install using 'python -m pip install --requirement'. The sources is expected to be the requirements file. |``False`` ``zipped_egg`` |Install as a zipped eggs |``False`` +### Customised steps in ``PythonBundle`` easyblock + +* ``build_step`` - The type of the None singleton. + +* ``configure_step`` - The type of the None singleton. + +* ``install_step`` - The type of the None singleton. + + ## ``PythonPackage`` (derives from ``ExtensionEasyBlock``) @@ -1178,33 +1266,34 @@ Builds and installs a Python package, and provides a dedicated module file. ### Extra easyconfig parameters specific to ``PythonPackage`` easyblock -easyconfig parameter |description |default value -------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|----------------------------------------------------------------------- -``buildcmd`` |Command for building the package (e.g. for custom builds resulting in a whl file). When using setup.py this will be passed to setup.py and defaults to 'build'. Otherwise it will be used as-is. A value of None then skips the build step. The template %(python)s will be replace by the currently used Python binary.|``None`` -``check_ldshared`` |Check Python value of $LDSHARED, correct if needed to "$CC -shared" |``None`` -``download_dep_fail`` |Fail if downloaded dependencies are detected |``None`` -``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` -``install_target`` |Option to pass to setup.py |``"install"`` -``max_py_majver`` |Maximum major Python version (only relevant when using system Python) |``None`` -``max_py_minver`` |Maximum minor Python version (only relevant when using system Python) |``None`` -``options`` |Dictionary with extension options. |``{}`` -``pip_ignore_installed``|Let pip ignore installed Python packages (i.e. don't remove them) |``True`` -``pip_no_index`` |Pass --no-index to pip to disable connecting to PyPi entirely which also disables the pip version check. Enabled by default when pip_ignore_installed=True |``None`` -``pip_verbose`` |Pass --verbose to 'pip install' (if pip is used). Enabled by default if the EB option --debug is used. |``None`` -``req_py_majver`` |Required major Python version (only relevant when using system Python) |``None`` -``req_py_minver`` |Required minor Python version (only relevant when using system Python) |``None`` -``runtest`` |Run unit tests. |``True`` -``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``False`` -``source_urls`` |List of URLs for source files |``['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s']`` -``testinstall`` |Install into temporary directory prior to running the tests. |``False`` -``unpack_sources`` |Unpack sources prior to build/install. Defaults to 'True' except for whl files |``None`` -``unversioned_packages``|List of packages that don't have a version at all, i.e. show 0.0.0 |``[]`` -``use_pip`` |Install using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``None`` -``use_pip_editable`` |Install using 'pip install --editable' |``False`` -``use_pip_extras`` |String with comma-separated list of 'extras' to install via pip |``None`` -``use_pip_for_deps`` |Install dependencies using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``False`` -``use_pip_requirement`` |Install using 'python -m pip install --requirement'. The sources is expected to be the requirements file. |``False`` -``zipped_egg`` |Install as a zipped eggs |``False`` +easyconfig parameter |description |default value +--------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|----------------------------------------------------------------------- +``buildcmd`` |Command for building the package (e.g. for custom builds resulting in a whl file). When using setup.py this will be passed to setup.py and defaults to 'build'. Otherwise it will be used as-is. A value of None then skips the build step. The template %(python)s will be replace by the currently used Python binary.|``None`` +``check_ldshared`` |Check Python value of $LDSHARED, correct if needed to "$CC -shared" |``None`` +``download_dep_fail`` |Fail if downloaded dependencies are detected |``True`` +``fix_python_shebang_for``|List of files for which Python shebang should be fixed to '#!/usr/bin/env python' (glob patterns supported) (default: ['bin/*']) |``['bin/*']`` +``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` +``install_target`` |Option to pass to setup.py |``"install"`` +``max_py_majver`` |Maximum major Python version (only relevant when using system Python) |``None`` +``max_py_minver`` |Maximum minor Python version (only relevant when using system Python) |``None`` +``options`` |Dictionary with extension options. |``{}`` +``pip_ignore_installed`` |Let pip ignore installed Python packages (i.e. don't remove them) |``True`` +``pip_no_index`` |Pass --no-index to pip to disable connecting to PyPi entirely which also disables the pip version check. Enabled by default when pip_ignore_installed=True |``None`` +``pip_verbose`` |Pass --verbose to 'pip install' (if pip is used). Enabled by default if the EB option --debug is used. |``None`` +``req_py_majver`` |Required major Python version (only relevant when using system Python) |``None`` +``req_py_minver`` |Required minor Python version (only relevant when using system Python) |``None`` +``runtest`` |Run unit tests. |``True`` +``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``True`` +``source_urls`` |List of URLs for source files |``['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s']`` +``testinstall`` |Install into temporary directory prior to running the tests. |``False`` +``unpack_sources`` |Unpack sources prior to build/install. Defaults to 'True' except for whl files |``None`` +``unversioned_packages`` |List of packages that don't have a version at all, i.e. show 0.0.0 |``[]`` +``use_pip`` |Install using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``True`` +``use_pip_editable`` |Install using 'pip install --editable' |``False`` +``use_pip_extras`` |String with comma-separated list of 'extras' to install via pip |``None`` +``use_pip_for_deps`` |Install dependencies using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``False`` +``use_pip_requirement`` |Install using 'python -m pip install --requirement'. The sources is expected to be the requirements file. |``False`` +``zipped_egg`` |Install as a zipped eggs |``False`` ### Customised steps in ``PythonPackage`` easyblock @@ -1222,7 +1311,6 @@ easyconfig parameter |description Install an R package as a separate module, or as an extension. - ### Extra easyconfig parameters specific to ``RPackage`` easyblock easyconfig parameter|description |default value @@ -1250,7 +1338,6 @@ Support for installing RPM files. - sources is a list of rpms - installation is with --nodeps (so the sources list has to be complete) - ### Extra easyconfig parameters specific to ``Rpm`` easyblock easyconfig parameter|description |default value @@ -1267,6 +1354,8 @@ easyconfig parameter|description ### Customised steps in ``Rpm`` easyblock +* ``build_step`` - The type of the None singleton. + * ``configure_step`` - Custom configuration procedure for RPMs: rebuild RPMs for relocation if required. * ``install_step`` - Custom installation procedure for RPMs into a custom prefix. @@ -1315,7 +1404,7 @@ easyconfig parameter|description |default value ## ``SystemCompiler`` -(derives from [``Bundle``](#bundle), ``EB_GCC``, ``EB_ifort``) +(derives from [``Bundle``](#bundle)) Support for generating a module file for the system compiler with specified name. @@ -1325,51 +1414,89 @@ The compiler is expected to be available in $PATH, required libraries are assume Specifying 'system' as a version leads to using the derived compiler version in the generated module; if an actual version is specified, it is checked against the derived version of the system compiler that was found. - ### Extra easyconfig parameters specific to ``SystemCompiler`` easyblock -easyconfig parameter |description |default value ---------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|-------------------- -``altroot`` |Software name of dependency to use to define $EBROOT for this bundle |``None`` -``altversion`` |Software name of dependency to use to define $EBVERSION for this bundle |``None`` -``build_cmd`` |Build command to use |``"make"`` -``build_cmd_targets`` |Target name (string) or list of target names to build |``""`` -``build_type`` |Value to provide to --build option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` -``clooguseisl`` |Use ISL with CLooG or not |``False`` -``components`` |List of components to install: tuples w/ name, version and easyblock to use |``()`` -``configure_cmd`` |Configure command to use |``"./configure"`` -``configure_cmd_prefix`` |Prefix to be glued before ./configure |``""`` -``configure_without_installdir``|Avoid passing an install directory to the configure command (such as via --prefix) |``False`` -``default_component_specs`` |Default specs to use for every component |``{}`` -``default_easyblock`` |Default easyblock to use for components |``None`` -``generate_standalone_module`` |Add known path/library extensions and environment variables for the compiler to the final module |``False`` -``generic`` |Build GCC and support libraries such that it runs on all processors of the target architecture (use False to enforce non-generic regardless of configuration) |``None`` -``host_type`` |Value to provide to --host option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` -``install_cmd`` |Install command to use |``"make install"`` -``languages`` |List of languages to build GCC for (--enable-languages) |``[]`` -``license_activation`` |License activation type |``"license_server"`` -``m32`` |Enable 32-bit toolchain |``False`` -``multilib`` |Build multilib gcc (both i386 and x86_64) |``False`` -``pplwatchdog`` |Enable PPL watchdog |``False`` -``prefer_lib_subdir`` |Configure GCC to prefer 'lib' subdirs over 'lib64' when linking |``False`` -``prefix_opt`` |Prefix command line option for configure script ('--prefix=' if None) |``None`` -``profiled`` |Bootstrap GCC with profile-guided optimizations |``False`` -``rename_include_fixed`` |Rename the 'include-fixed' directory to avoid that it is used by GCC. This avoids issues when upgrading the OS but might limit the functionality of GCC, especially if the OS GLIBC is older than GCC. A script to (re-)generate the include-fixed folder is created in the 'easybuild' subfolder inside the installation directory.|``False`` -``requires_runtime_license`` |Boolean indicating whether or not a runtime license is required |``True`` -``sanity_check_all_components`` |Enable sanity checks for all components |``False`` -``sanity_check_components`` |List of components for which to run sanity checks |``[]`` -``serial_number`` |Serial number for the product |``None`` -``tar_config_opts`` |Override tar settings as determined by configure. |``False`` -``test_cmd`` |Test command to use ('runtest' value is appended, default: 'make') |``None`` -``use_gold_linker`` |Configure GCC to use GOLD as default linker (default: enable automatically for GCC < 11.3.0, except on RISC-V) |``None`` -``usetmppath`` |Use temporary path for installation |``False`` -``withamdgcn`` |Build GCC with AMD GCN offload support |``False`` -``withcloog`` |Build GCC with CLooG support |``False`` -``withisl`` |Build GCC with ISL support |``False`` -``withlibiberty`` |Enable installing of libiberty |``False`` -``withlto`` |Enable LTO support |``True`` -``withnvptx`` |Build GCC with NVPTX offload support |``False`` -``withppl`` |Build GCC with PPL support |``False`` +easyconfig parameter |description |default value +-------------------------------|------------------------------------------------------------------------------------------------|------------- +``altroot`` |Software name of dependency to use to define $EBROOT for this bundle |``None`` +``altversion`` |Software name of dependency to use to define $EBVERSION for this bundle |``None`` +``components`` |List of components to install: tuples w/ name, version and easyblock to use |``()`` +``default_component_specs`` |Default specs to use for every component |``{}`` +``default_easyblock`` |Default easyblock to use for components |``None`` +``generate_standalone_module`` |Add known path/library extensions and environment variables for the compiler to the final module|``False`` +``sanity_check_all_components``|Enable sanity checks for all components |``False`` +``sanity_check_components`` |List of components for which to run sanity checks |``[]`` + +### Customised steps in ``SystemCompiler`` easyblock + +* ``build_step`` - The type of the None singleton. + +* ``configure_step`` - The type of the None singleton. + +* ``install_step`` - The type of the None singleton. + + +## ``SystemCompilerGCC`` + +(derives from [``SystemCompiler``](#systemcompiler), ``EB_GCC``) + + +Support for generating a module file for a system compiler based on GCC with specified name. + +The compiler is expected to be available in $PATH, required libraries are assumed to be readily available. + +Specifying 'system' as a version leads to using the derived compiler version in the generated module; +if an actual version is specified, it is checked against the derived version of the system compiler that was found. + +### Extra easyconfig parameters specific to ``SystemCompilerGCC`` easyblock + +easyconfig parameter |description |default value +----------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|------------------ +``altroot`` |Software name of dependency to use to define $EBROOT for this bundle |``None`` +``altversion`` |Software name of dependency to use to define $EBVERSION for this bundle |``None`` +``build_cmd`` |Build command to use |``"make"`` +``build_cmd_targets`` |Target name (string) or list of target names to build |``""`` +``build_type`` |Value to provide to --build option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` +``clooguseisl`` |Use ISL with CLooG or not |``False`` +``components`` |List of components to install: tuples w/ name, version and easyblock to use |``()`` +``configure_cmd`` |Configure command to use |``"./configure"`` +``configure_cmd_prefix`` |Prefix to be glued before ./configure |``""`` +``configure_without_installdir`` |Avoid passing an install directory to the configure command (such as via --prefix) |``False`` +``default_component_specs`` |Default specs to use for every component |``{}`` +``default_easyblock`` |Default easyblock to use for components |``None`` +``generate_standalone_module`` |Add known path/library extensions and environment variables for the compiler to the final module |``False`` +``generic`` |Build GCC and support libraries such that it runs on all processors of the target architecture (use False to enforce non-generic regardless of configuration) |``None`` +``host_type`` |Value to provide to --host option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` +``install_cmd`` |Install command to use |``"make install"`` +``languages`` |List of languages to build GCC for (--enable-languages) |``[]`` +``multilib`` |Build multilib gcc (both i386 and x86_64) |``False`` +``pplwatchdog`` |Enable PPL watchdog |``False`` +``prefer_lib_subdir`` |Configure GCC to prefer 'lib' subdirs over 'lib64' when linking |``False`` +``prefix_opt`` |Prefix command line option for configure script ('--prefix=' if None) |``None`` +``profiled`` |Bootstrap GCC with profile-guided optimizations |``False`` +``rename_include_fixed`` |Rename the 'include-fixed' directory to avoid that it is used by GCC. This avoids issues when upgrading the OS but might limit the functionality of GCC, especially if the OS GLIBC is older than GCC. A script to (re-)generate the include-fixed folder is created in the 'easybuild' subfolder inside the installation directory.|``False`` +``sanity_check_all_components`` |Enable sanity checks for all components |``False`` +``sanity_check_components`` |List of components for which to run sanity checks |``[]`` +``tar_config_opts`` |Override tar settings as determined by configure. |``False`` +``test_cmd`` |Test command to use ('runtest' value is appended, default: 'make') |``None`` +``unrecognized_configure_options``|Action to do when unrecognized options passed to ./configure are detected, defaults to aborting the build. Can be set to 'warn' or 'ignore' (NOT RECOMMENDED! It might hide actual errors e.g. misspelling of intended or changed options) |``"error"`` +``use_gold_linker`` |Configure GCC to use GOLD as default linker (default: enable automatically for GCC < 11.3.0, except on RISC-V) |``None`` +``withamdgcn`` |Build GCC with AMD GCN offload support |``False`` +``withcloog`` |Build GCC with CLooG support |``False`` +``withisl`` |Build GCC with ISL support |``False`` +``withlibiberty`` |Enable installing of libiberty |``False`` +``withlto`` |Enable LTO support |``True`` +``withnvptx`` |Build GCC with NVPTX offload support |``False`` +``withppl`` |Build GCC with PPL support |``False`` + +### Customised steps in ``SystemCompilerGCC`` easyblock + +* ``build_step`` - The type of the None singleton. + +* ``configure_step`` - The type of the None singleton. + +* ``install_step`` - The type of the None singleton. + ## ``SystemMPI`` @@ -1383,42 +1510,49 @@ The mpi compiler is expected to be available in $PATH, required libraries are as Specifying 'system' as a version leads to using the derived mpi version in the generated module; if an actual version is specified, it is checked against the derived version of the system mpi that was found. - ### Extra easyconfig parameters specific to ``SystemMPI`` easyblock -easyconfig parameter |description |default value ----------------------------------|---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|-------------------- -``altroot`` |Software name of dependency to use to define $EBROOT for this bundle |``None`` -``altversion`` |Software name of dependency to use to define $EBVERSION for this bundle |``None`` -``build_cmd`` |Build command to use |``"make"`` -``build_cmd_targets`` |Target name (string) or list of target names to build |``""`` -``build_type`` |Value to provide to --build option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script)|``None`` -``components`` |List of components to install: tuples w/ name, version and easyblock to use |``()`` -``configure_cmd`` |Configure command to use |``"./configure"`` -``configure_cmd_prefix`` |Prefix to be glued before ./configure |``""`` -``configure_without_installdir`` |Avoid passing an install directory to the configure command (such as via --prefix) |``False`` -``default_component_specs`` |Default specs to use for every component |``{}`` -``default_easyblock`` |Default easyblock to use for components |``None`` -``generate_standalone_module`` |Add known path extensions and environment variables for the MPI installation to the final module |``False`` -``host_type`` |Value to provide to --host option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` -``install_cmd`` |Install command to use |``"make install"`` -``libfabric_configopts`` |Configure options for the provided libfabric |``""`` -``libfabric_rebuild`` |Try to rebuild internal libfabric instead of using provided binary |``True`` -``license_activation`` |License activation type |``"license_server"`` -``m32`` |Enable 32-bit toolchain |``False`` -``ofi_internal`` |Use internal shipped libfabric instead of external libfabric |``True`` -``prefix_opt`` |Prefix command line option for configure script ('--prefix=' if None) |``None`` -``requires_runtime_license`` |Boolean indicating whether or not a runtime license is required |``True`` -``sanity_check_all_components`` |Enable sanity checks for all components |``False`` -``sanity_check_components`` |List of components for which to run sanity checks |``[]`` -``serial_number`` |Serial number for the product |``None`` -``set_mpi_wrapper_aliases_gcc`` |Set compiler for mpigcc/mpigxx via aliases |``False`` -``set_mpi_wrapper_aliases_intel``|Set compiler for mpiicc/mpiicpc/mpiifort via aliases |``False`` -``set_mpi_wrappers_all`` |Set (default) compiler for all MPI wrapper commands |``False`` -``set_mpi_wrappers_compiler`` |Override default compiler used by MPI wrapper commands |``False`` -``tar_config_opts`` |Override tar settings as determined by configure. |``False`` -``test_cmd`` |Test command to use ('runtest' value is appended, default: 'make') |``None`` -``usetmppath`` |Use temporary path for installation |``False`` +easyconfig parameter |description |default value +----------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|-------------------- +``altroot`` |Software name of dependency to use to define $EBROOT for this bundle |``None`` +``altversion`` |Software name of dependency to use to define $EBVERSION for this bundle |``None`` +``build_cmd`` |Build command to use |``"make"`` +``build_cmd_targets`` |Target name (string) or list of target names to build |``""`` +``build_type`` |Value to provide to --build option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` +``components`` |List of components to install: tuples w/ name, version and easyblock to use |``()`` +``configure_cmd`` |Configure command to use |``"./configure"`` +``configure_cmd_prefix`` |Prefix to be glued before ./configure |``""`` +``configure_without_installdir`` |Avoid passing an install directory to the configure command (such as via --prefix) |``False`` +``default_component_specs`` |Default specs to use for every component |``{}`` +``default_easyblock`` |Default easyblock to use for components |``None`` +``generate_standalone_module`` |Add known path extensions and environment variables for the MPI installation to the final module |``False`` +``host_type`` |Value to provide to --host option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` +``install_cmd`` |Install command to use |``"make install"`` +``libfabric_configopts`` |Configure options for the provided libfabric |``""`` +``libfabric_rebuild`` |Try to rebuild internal libfabric instead of using provided binary |``True`` +``license_activation`` |License activation type |``"license_server"`` +``ofi_internal`` |Use internal shipped libfabric instead of external libfabric |``True`` +``prefix_opt`` |Prefix command line option for configure script ('--prefix=' if None) |``None`` +``requires_runtime_license`` |Boolean indicating whether or not a runtime license is required |``True`` +``sanity_check_all_components`` |Enable sanity checks for all components |``False`` +``sanity_check_components`` |List of components for which to run sanity checks |``[]`` +``serial_number`` |Serial number for the product |``None`` +``set_mpi_wrapper_aliases_gcc`` |Set compiler for mpigcc/mpigxx via aliases |``False`` +``set_mpi_wrapper_aliases_intel`` |Set compiler for mpiicc/mpiicpc/mpiifort via aliases |``False`` +``set_mpi_wrappers_all`` |Set (default) compiler for all MPI wrapper commands |``False`` +``set_mpi_wrappers_compiler`` |Override default compiler used by MPI wrapper commands |``False`` +``tar_config_opts`` |Override tar settings as determined by configure. |``False`` +``test_cmd`` |Test command to use ('runtest' value is appended, default: 'make') |``None`` +``unrecognized_configure_options``|Action to do when unrecognized options passed to ./configure are detected, defaults to aborting the build. Can be set to 'warn' or 'ignore' (NOT RECOMMENDED! It might hide actual errors e.g. misspelling of intended or changed options)|``"error"`` + +### Customised steps in ``SystemMPI`` easyblock + +* ``build_step`` - The type of the None singleton. + +* ``configure_step`` - The type of the None singleton. + +* ``install_step`` - The type of the None singleton. + ## ``Tarball`` @@ -1427,7 +1561,6 @@ easyconfig parameter |description Precompiled software supplied as a tarball: will unpack binary and copy it to the install dir - ### Extra easyconfig parameters specific to ``Tarball`` easyblock easyconfig parameter|description |default value @@ -1464,6 +1597,15 @@ easyconfig parameter |description ``sanity_check_components`` |List of components for which to run sanity checks |``[]`` ``set_env_external_modules`` |Include setenv statements for toolchain components that use an external module, based on available metadata|``False`` +### Customised steps in ``Toolchain`` easyblock + +* ``build_step`` - The type of the None singleton. + +* ``configure_step`` - The type of the None singleton. + +* ``install_step`` - The type of the None singleton. + + ## ``VSCPythonPackage`` (derives from [``VersionIndependentPythonPackage``](#versionindependentpythonpackage)) @@ -1472,33 +1614,43 @@ Support for install VSC Python packages. ### Extra easyconfig parameters specific to ``VSCPythonPackage`` easyblock -easyconfig parameter |description |default value -------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|----------------------------------------------------------------------- -``buildcmd`` |Command for building the package (e.g. for custom builds resulting in a whl file). When using setup.py this will be passed to setup.py and defaults to 'build'. Otherwise it will be used as-is. A value of None then skips the build step. The template %(python)s will be replace by the currently used Python binary.|``None`` -``check_ldshared`` |Check Python value of $LDSHARED, correct if needed to "$CC -shared" |``None`` -``download_dep_fail`` |Fail if downloaded dependencies are detected |``None`` -``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` -``install_target`` |Option to pass to setup.py |``"install"`` -``max_py_majver`` |Maximum major Python version (only relevant when using system Python) |``None`` -``max_py_minver`` |Maximum minor Python version (only relevant when using system Python) |``None`` -``options`` |Dictionary with extension options. |``{}`` -``pip_ignore_installed``|Let pip ignore installed Python packages (i.e. don't remove them) |``True`` -``pip_no_index`` |Pass --no-index to pip to disable connecting to PyPi entirely which also disables the pip version check. Enabled by default when pip_ignore_installed=True |``None`` -``pip_verbose`` |Pass --verbose to 'pip install' (if pip is used). Enabled by default if the EB option --debug is used. |``None`` -``req_py_majver`` |Required major Python version (only relevant when using system Python) |``None`` -``req_py_minver`` |Required minor Python version (only relevant when using system Python) |``None`` -``runtest`` |Run unit tests. |``True`` -``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``False`` -``source_urls`` |List of URLs for source files |``['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s']`` -``testinstall`` |Install into temporary directory prior to running the tests. |``False`` -``unpack_sources`` |Unpack sources prior to build/install. Defaults to 'True' except for whl files |``None`` -``unversioned_packages``|List of packages that don't have a version at all, i.e. show 0.0.0 |``[]`` -``use_pip`` |Install using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``None`` -``use_pip_editable`` |Install using 'pip install --editable' |``False`` -``use_pip_extras`` |String with comma-separated list of 'extras' to install via pip |``None`` -``use_pip_for_deps`` |Install dependencies using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``False`` -``use_pip_requirement`` |Install using 'python -m pip install --requirement'. The sources is expected to be the requirements file. |``False`` -``zipped_egg`` |Install as a zipped eggs |``False`` +easyconfig parameter |description |default value +--------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|----------------------------------------------------------------------- +``buildcmd`` |Command for building the package (e.g. for custom builds resulting in a whl file). When using setup.py this will be passed to setup.py and defaults to 'build'. Otherwise it will be used as-is. A value of None then skips the build step. The template %(python)s will be replace by the currently used Python binary.|``None`` +``check_ldshared`` |Check Python value of $LDSHARED, correct if needed to "$CC -shared" |``None`` +``download_dep_fail`` |Fail if downloaded dependencies are detected |``True`` +``fix_python_shebang_for``|List of files for which Python shebang should be fixed to '#!/usr/bin/env python' (glob patterns supported) (default: ['bin/*']) |``['bin/*']`` +``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` +``install_target`` |Option to pass to setup.py |``"install"`` +``max_py_majver`` |Maximum major Python version (only relevant when using system Python) |``None`` +``max_py_minver`` |Maximum minor Python version (only relevant when using system Python) |``None`` +``options`` |Dictionary with extension options. |``{}`` +``pip_ignore_installed`` |Let pip ignore installed Python packages (i.e. don't remove them) |``True`` +``pip_no_index`` |Pass --no-index to pip to disable connecting to PyPi entirely which also disables the pip version check. Enabled by default when pip_ignore_installed=True |``None`` +``pip_verbose`` |Pass --verbose to 'pip install' (if pip is used). Enabled by default if the EB option --debug is used. |``None`` +``req_py_majver`` |Required major Python version (only relevant when using system Python) |``None`` +``req_py_minver`` |Required minor Python version (only relevant when using system Python) |``None`` +``runtest`` |Run unit tests. |``True`` +``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``True`` +``source_urls`` |List of URLs for source files |``['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s']`` +``testinstall`` |Install into temporary directory prior to running the tests. |``False`` +``unpack_sources`` |Unpack sources prior to build/install. Defaults to 'True' except for whl files |``None`` +``unversioned_packages`` |List of packages that don't have a version at all, i.e. show 0.0.0 |``[]`` +``use_pip`` |Install using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``True`` +``use_pip_editable`` |Install using 'pip install --editable' |``False`` +``use_pip_extras`` |String with comma-separated list of 'extras' to install via pip |``None`` +``use_pip_for_deps`` |Install dependencies using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``False`` +``use_pip_requirement`` |Install using 'python -m pip install --requirement'. The sources is expected to be the requirements file. |``False`` +``zipped_egg`` |Install as a zipped eggs |``False`` + +### Customised steps in ``VSCPythonPackage`` easyblock + +* ``build_step`` - The type of the None singleton. + +* ``configure_step`` - The type of the None singleton. + +* ``install_step`` - The type of the None singleton. + ## ``VersionIndependentPythonPackage`` @@ -1508,33 +1660,34 @@ Support for building/installing python packages without requiring a specific pyt ### Extra easyconfig parameters specific to ``VersionIndependentPythonPackage`` easyblock -easyconfig parameter |description |default value -------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|----------------------------------------------------------------------- -``buildcmd`` |Command for building the package (e.g. for custom builds resulting in a whl file). When using setup.py this will be passed to setup.py and defaults to 'build'. Otherwise it will be used as-is. A value of None then skips the build step. The template %(python)s will be replace by the currently used Python binary.|``None`` -``check_ldshared`` |Check Python value of $LDSHARED, correct if needed to "$CC -shared" |``None`` -``download_dep_fail`` |Fail if downloaded dependencies are detected |``None`` -``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` -``install_target`` |Option to pass to setup.py |``"install"`` -``max_py_majver`` |Maximum major Python version (only relevant when using system Python) |``None`` -``max_py_minver`` |Maximum minor Python version (only relevant when using system Python) |``None`` -``options`` |Dictionary with extension options. |``{}`` -``pip_ignore_installed``|Let pip ignore installed Python packages (i.e. don't remove them) |``True`` -``pip_no_index`` |Pass --no-index to pip to disable connecting to PyPi entirely which also disables the pip version check. Enabled by default when pip_ignore_installed=True |``None`` -``pip_verbose`` |Pass --verbose to 'pip install' (if pip is used). Enabled by default if the EB option --debug is used. |``None`` -``req_py_majver`` |Required major Python version (only relevant when using system Python) |``None`` -``req_py_minver`` |Required minor Python version (only relevant when using system Python) |``None`` -``runtest`` |Run unit tests. |``True`` -``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``False`` -``source_urls`` |List of URLs for source files |``['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s']`` -``testinstall`` |Install into temporary directory prior to running the tests. |``False`` -``unpack_sources`` |Unpack sources prior to build/install. Defaults to 'True' except for whl files |``None`` -``unversioned_packages``|List of packages that don't have a version at all, i.e. show 0.0.0 |``[]`` -``use_pip`` |Install using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``None`` -``use_pip_editable`` |Install using 'pip install --editable' |``False`` -``use_pip_extras`` |String with comma-separated list of 'extras' to install via pip |``None`` -``use_pip_for_deps`` |Install dependencies using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``False`` -``use_pip_requirement`` |Install using 'python -m pip install --requirement'. The sources is expected to be the requirements file. |``False`` -``zipped_egg`` |Install as a zipped eggs |``False`` +easyconfig parameter |description |default value +--------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|----------------------------------------------------------------------- +``buildcmd`` |Command for building the package (e.g. for custom builds resulting in a whl file). When using setup.py this will be passed to setup.py and defaults to 'build'. Otherwise it will be used as-is. A value of None then skips the build step. The template %(python)s will be replace by the currently used Python binary.|``None`` +``check_ldshared`` |Check Python value of $LDSHARED, correct if needed to "$CC -shared" |``None`` +``download_dep_fail`` |Fail if downloaded dependencies are detected |``True`` +``fix_python_shebang_for``|List of files for which Python shebang should be fixed to '#!/usr/bin/env python' (glob patterns supported) (default: ['bin/*']) |``['bin/*']`` +``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` +``install_target`` |Option to pass to setup.py |``"install"`` +``max_py_majver`` |Maximum major Python version (only relevant when using system Python) |``None`` +``max_py_minver`` |Maximum minor Python version (only relevant when using system Python) |``None`` +``options`` |Dictionary with extension options. |``{}`` +``pip_ignore_installed`` |Let pip ignore installed Python packages (i.e. don't remove them) |``True`` +``pip_no_index`` |Pass --no-index to pip to disable connecting to PyPi entirely which also disables the pip version check. Enabled by default when pip_ignore_installed=True |``None`` +``pip_verbose`` |Pass --verbose to 'pip install' (if pip is used). Enabled by default if the EB option --debug is used. |``None`` +``req_py_majver`` |Required major Python version (only relevant when using system Python) |``None`` +``req_py_minver`` |Required minor Python version (only relevant when using system Python) |``None`` +``runtest`` |Run unit tests. |``True`` +``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``True`` +``source_urls`` |List of URLs for source files |``['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s']`` +``testinstall`` |Install into temporary directory prior to running the tests. |``False`` +``unpack_sources`` |Unpack sources prior to build/install. Defaults to 'True' except for whl files |``None`` +``unversioned_packages`` |List of packages that don't have a version at all, i.e. show 0.0.0 |``[]`` +``use_pip`` |Install using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``True`` +``use_pip_editable`` |Install using 'pip install --editable' |``False`` +``use_pip_extras`` |String with comma-separated list of 'extras' to install via pip |``None`` +``use_pip_for_deps`` |Install dependencies using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' |``False`` +``use_pip_requirement`` |Install using 'python -m pip install --requirement'. The sources is expected to be the requirements file. |``False`` +``zipped_egg`` |Install as a zipped eggs |``False`` ### Customised steps in ``VersionIndependentPythonPackage`` easyblock @@ -1552,7 +1705,6 @@ easyconfig parameter |description Support for building and installing applications with waf - ### Customised steps in ``Waf`` easyblock * ``build_step`` - Build with ./waf build diff --git a/docs/version-specific/supported-software/0/4ti2.md b/docs/version-specific/supported-software/0/4ti2.md index 40706f818b..80f1a256bc 100644 --- a/docs/version-specific/supported-software/0/4ti2.md +++ b/docs/version-specific/supported-software/0/4ti2.md @@ -12,8 +12,6 @@ version | toolchain --------|---------- ``1.6.10`` | ``GCC/13.2.0`` ``1.6.9`` | ``GCC/11.3.0`` -``1.6.9`` | ``GCC/8.2.0-2.31.1`` -``1.6.9`` | ``intel/2018b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/0/index.md b/docs/version-specific/supported-software/0/index.md index 1e8861f863..310d415bdb 100644 --- a/docs/version-specific/supported-software/0/index.md +++ b/docs/version-specific/supported-software/0/index.md @@ -8,8 +8,6 @@ search: - * [3d-dna](3d-dna.md) - * [3to2](3to2.md) * [4ti2](4ti2.md) diff --git a/docs/version-specific/supported-software/a/ABAQUS.md b/docs/version-specific/supported-software/a/ABAQUS.md index 366dbb823c..d581bb30e1 100644 --- a/docs/version-specific/supported-software/a/ABAQUS.md +++ b/docs/version-specific/supported-software/a/ABAQUS.md @@ -6,20 +6,18 @@ search: Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit dynamics FEA. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2017`` | ``-hotfix-1721`` | ``system`` -``2018`` | ``-hotfix-1806`` | ``system`` ``2020`` | | ``system`` ``2021`` | ``-hotfix-2132`` | ``system`` ``2022`` | ``-hotfix-2214`` | ``system`` ``2022`` | ``-hotfix-2223`` | ``system`` ``2022`` | | ``system`` -``6.12.1`` | ``-linux-x86_64`` | ``system`` -``6.13.5`` | ``-linux-x86_64`` | ``system`` -``6.14.1`` | ``-linux-x86_64`` | ``system`` +``2024`` | ``-hotfix-2405`` | ``system`` +``2024`` | ``-hotfix-2424`` | ``system`` +``2024`` | ``-hotfix-2441`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ABINIT.md b/docs/version-specific/supported-software/a/ABINIT.md index 79e6160b43..f1363b7b92 100644 --- a/docs/version-specific/supported-software/a/ABINIT.md +++ b/docs/version-specific/supported-software/a/ABINIT.md @@ -4,39 +4,22 @@ search: --- # ABINIT -Abinit is a plane wave pseudopotential code for doing condensed phase electronic structure calculations using DFT. +ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``7.0.3`` | ``-x86_64_linux_gnu4.5`` | ``system`` -``7.0.5`` | ``-x86_64_linux_gnu4.5`` | ``system`` -``7.10.5`` | ``-libxc`` | ``intel/2016.02-GCC-4.9`` -``7.10.5`` | | ``intel/2016.02-GCC-4.9`` -``7.2.1`` | ``-x86_64_linux_gnu4.5`` | ``system`` -``8.0.8`` | | ``intel/2016a`` -``8.0.8b`` | | ``foss/2016b`` -``8.0.8b`` | | ``intel/2016b`` -``8.10.2`` | | ``intel/2018b`` -``8.10.3`` | | ``intel/2018b`` -``8.2.2`` | | ``foss/2016b`` -``8.2.2`` | | ``intel/2016b`` -``8.4.4`` | | ``intel/2017b`` -``8.6.3`` | | ``intel/2018a`` -``9.10.3`` | | ``intel/2022a`` -``9.2.1`` | | ``foss/2019b`` -``9.2.1`` | | ``intel/2019b`` -``9.2.1`` | | ``intel/2020a`` -``9.4.1`` | | ``foss/2020b`` -``9.4.1`` | | ``intel/2020a`` -``9.4.1`` | | ``intel/2020b`` -``9.4.2`` | | ``foss/2021a`` -``9.4.2`` | | ``intel/2021a`` -``9.6.2`` | | ``foss/2022a`` -``9.6.2`` | | ``intel/2021a`` -``9.6.2`` | | ``intel/2021b`` -``9.6.2`` | | ``intel/2022a`` +version | toolchain +--------|---------- +``10.2.5`` | ``intel/2023a`` +``9.10.3`` | ``intel/2022a`` +``9.4.1`` | ``foss/2020b`` +``9.4.1`` | ``intel/2020b`` +``9.4.2`` | ``foss/2021a`` +``9.4.2`` | ``intel/2021a`` +``9.6.2`` | ``foss/2022a`` +``9.6.2`` | ``intel/2021a`` +``9.6.2`` | ``intel/2021b`` +``9.6.2`` | ``intel/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ABRA2.md b/docs/version-specific/supported-software/a/ABRA2.md index 95f6e38447..542cfc67fe 100644 --- a/docs/version-specific/supported-software/a/ABRA2.md +++ b/docs/version-specific/supported-software/a/ABRA2.md @@ -10,9 +10,7 @@ Assembly Based ReAligner version | toolchain --------|---------- -``2.22`` | ``iccifort/2019.5.281`` ``2.23`` | ``GCC/10.2.0`` -``2.23`` | ``GCC/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ABRicate.md b/docs/version-specific/supported-software/a/ABRicate.md index 01947458fb..b8ccf7f38f 100644 --- a/docs/version-specific/supported-software/a/ABRicate.md +++ b/docs/version-specific/supported-software/a/ABRicate.md @@ -8,11 +8,11 @@ Mass screening of contigs for antimicrobial and virulence genes *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.9.9`` | ``-Perl-5.28.1`` | ``gompi/2019a`` -``0.9.9`` | | ``gompi/2019b`` -``1.0.0`` | | ``gompi/2021a`` +version | toolchain +--------|---------- +``1.0.0`` | ``gompi/2021a`` +``1.0.0`` | ``gompi/2023a`` +``1.0.0`` | ``gompi/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ABySS.md b/docs/version-specific/supported-software/a/ABySS.md index 8053c7f92a..36b6ecb39b 100644 --- a/docs/version-specific/supported-software/a/ABySS.md +++ b/docs/version-specific/supported-software/a/ABySS.md @@ -6,18 +6,10 @@ search: Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.9.0`` | ``foss/2016a`` -``2.0.2`` | ``foss/2016b`` -``2.0.2`` | ``foss/2018a`` -``2.0.2`` | ``gompi/2019a`` -``2.0.2`` | ``intel/2016b`` -``2.0.3`` | ``foss/2017b`` -``2.0.3`` | ``intel/2017b`` -``2.1.5`` | ``foss/2019b`` ``2.2.5`` | ``foss/2020b`` ``2.3.7`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/a/ACTC.md b/docs/version-specific/supported-software/a/ACTC.md index ef3d8c1775..e637874cf0 100644 --- a/docs/version-specific/supported-software/a/ACTC.md +++ b/docs/version-specific/supported-software/a/ACTC.md @@ -12,11 +12,7 @@ version | toolchain --------|---------- ``1.1`` | ``GCCcore/10.2.0`` ``1.1`` | ``GCCcore/11.3.0`` -``1.1`` | ``GCCcore/6.4.0`` -``1.1`` | ``GCCcore/7.3.0`` -``1.1`` | ``GCCcore/8.3.0`` -``1.1`` | ``GCCcore/9.3.0`` -``1.1`` | ``intel/2016b`` +``1.1`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ADF.md b/docs/version-specific/supported-software/a/ADF.md index 7da2048527..cb147047f6 100644 --- a/docs/version-specific/supported-software/a/ADF.md +++ b/docs/version-specific/supported-software/a/ADF.md @@ -4,16 +4,12 @@ search: --- # ADF -ADF is a premium-quality quantum chemistry software package based on Density Functional Theory (DFT). +ADF is an accurate, parallelized, powerful computational chemistry program to understand and predict chemical structure and reactivity with density functional theory (DFT). -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2009.01a.pc64_linux.intelmpi`` | | ``system`` -``2014.02`` | | ``system`` -``2014.11.r48287`` | | ``intel/2016a`` -``2016.101`` | | ``system`` ``2019.303`` | ``-intelmpi`` | ``system`` diff --git a/docs/version-specific/supported-software/a/AFNI.md b/docs/version-specific/supported-software/a/AFNI.md index a25b5e5960..a469a627ce 100644 --- a/docs/version-specific/supported-software/a/AFNI.md +++ b/docs/version-specific/supported-software/a/AFNI.md @@ -8,14 +8,9 @@ AFNI is a set of C programs for processing, analyzing, and displaying functional *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``18.1.09`` | ``-Python-3.6.4`` | ``intel/2018a`` -``18.3.00`` | ``-Python-3.6.6`` | ``foss/2018b`` -``19.0.01`` | ``-Python-2.7.14`` | ``foss/2017b`` -``19.0.01`` | ``-Python-2.7.14`` | ``intel/2017b`` -``20160329`` | ``-Python-2.7.11`` | ``intel/2016a`` -``24.0.02`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``24.0.02`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ALFA.md b/docs/version-specific/supported-software/a/ALFA.md deleted file mode 100644 index 9f2e18b0a7..0000000000 --- a/docs/version-specific/supported-software/a/ALFA.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ALFA - -ALFA provides a global overview of features distribution composing NGS dataset(s). Given a set of aligned reads (BAM files) and an annotation file (GTF format), the tool produces plots of the raw and normalized distributions of those reads among genomic categories (stop codon, 5'-UTR, CDS, intergenic, etc.) and biotypes (protein coding genes, miRNA, tRNA, etc.). Whatever the sequencing technique, whatever the organism. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.1`` | ``-Python-3.7.2`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/ALL.md b/docs/version-specific/supported-software/a/ALL.md index f3399f1c4e..3d9f8ffce4 100644 --- a/docs/version-specific/supported-software/a/ALL.md +++ b/docs/version-specific/supported-software/a/ALL.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``0.9.2`` | ``foss/2022b`` ``0.9.2`` | ``foss/2023a`` +``0.9.2`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ALPS.md b/docs/version-specific/supported-software/a/ALPS.md deleted file mode 100644 index 80a37eb10c..0000000000 --- a/docs/version-specific/supported-software/a/ALPS.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ALPS - -The ALPS project (Algorithms and Libraries for Physics Simulations) is an open source effort aiming at providing high-end simulation codes for strongly correlated quantum mechanical systems as well as C++ libraries for simplifying the development of such code. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.2.b4`` | ``-Python-2.7.11`` | ``intel/2016a`` -``2.3.0`` | ``-Python-2.7.12`` | ``foss/2016b`` -``2.3.0`` | ``-Python-3.5.2`` | ``foss/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/AMD-SecureRNG.md b/docs/version-specific/supported-software/a/AMD-SecureRNG.md deleted file mode 100644 index bd79efe1e3..0000000000 --- a/docs/version-specific/supported-software/a/AMD-SecureRNG.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# AMD-SecureRNG - -The AMD Secure Random Number Generator (RNG) is a library that provides APIs to access the cryptographically secure random numbers generated by AMD’s hardware-based random number generator implementation. - -*homepage*: - -version | toolchain ---------|---------- -``1.0`` | ``GCC/7.3.0-2.30`` -``2.2-4`` | ``GCC/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/AMOS.md b/docs/version-specific/supported-software/a/AMOS.md index f0321b6e48..6988926b36 100644 --- a/docs/version-specific/supported-software/a/AMOS.md +++ b/docs/version-specific/supported-software/a/AMOS.md @@ -10,7 +10,6 @@ The AMOS consortium is committed to the development of open-source whole genome version | toolchain --------|---------- -``3.1.0`` | ``foss/2018b`` ``3.1.0`` | ``foss/2021b`` ``3.1.0`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/a/AMRFinderPlus.md b/docs/version-specific/supported-software/a/AMRFinderPlus.md index 5f762d1004..cecf34d550 100644 --- a/docs/version-specific/supported-software/a/AMRFinderPlus.md +++ b/docs/version-specific/supported-software/a/AMRFinderPlus.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``3.11.18`` | ``gompi/2021b`` ``3.11.18`` | ``gompi/2022b`` +``3.12.8`` | ``gompi/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ANIcalculator.md b/docs/version-specific/supported-software/a/ANIcalculator.md index baecd973d2..7e0b3e97b4 100644 --- a/docs/version-specific/supported-software/a/ANIcalculator.md +++ b/docs/version-specific/supported-software/a/ANIcalculator.md @@ -4,7 +4,7 @@ search: --- # ANIcalculator -This tool will calculate the bidirectional average nucleotide identity (gANI) and Alignment Fraction (AF) between two genomes. Required input is the full path to the fna file (nucleotide sequence of genes in fasta format) of each query genome. Either the rRNA and tRNA genes can be excluded, or provided in a list with the -ignoreList option. This is necessary as the presence of tRNA and/or rRNA genes in the fna will artificially inflate the ANI. +This tool will calculate the bidirectional average nucleotide identity (gANI) and Alignment Fraction (AF) between two genomes. Required input is the full path to the fna file (nucleotide sequence of genes in fasta format) of each query genome. Either the rRNA and tRNA genes can be excluded, or provided in a list with the -ignoreList option. This is necessary as the presence of tRNA and/or rRNA genes in the fna will artificially inflate the ANI. *homepage*: diff --git a/docs/version-specific/supported-software/a/ANSYS.md b/docs/version-specific/supported-software/a/ANSYS.md index d7675190a8..d300a8976a 100644 --- a/docs/version-specific/supported-software/a/ANSYS.md +++ b/docs/version-specific/supported-software/a/ANSYS.md @@ -4,13 +4,12 @@ search: --- # ANSYS -ANSYS simulation software enables organizations to confidently predict how their products will operate in the real world. We believe that every product is a promise of something greater. +ANSYS simulation software enables organizations to confidently predict how their products will operate in the real world. We believe that every product is a promise of something greater. -*homepage*: +*homepage*: version | toolchain --------|---------- -``15.0`` | ``system`` ``2022R2`` | ``system`` ``2023R1`` | ``system`` diff --git a/docs/version-specific/supported-software/a/ANSYS_CFD.md b/docs/version-specific/supported-software/a/ANSYS_CFD.md deleted file mode 100644 index fbdf21ab1c..0000000000 --- a/docs/version-specific/supported-software/a/ANSYS_CFD.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ANSYS_CFD - -ANSYS computational fluid dynamics (CFD) simulation software allows you to predict, with confidence, the impact of fluid flows on your product throughout design and manufacturing as well as during end use. ANSYS renowned CFD analysis tools include the widely used and well-validated ANSYS Fluent and ANSYS CFX. - -*homepage*: - -version | toolchain ---------|---------- -``16.2`` | ``system`` -``17.0`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/ANTLR.md b/docs/version-specific/supported-software/a/ANTLR.md index 75b24f1ef1..c4a5d57e9f 100644 --- a/docs/version-specific/supported-software/a/ANTLR.md +++ b/docs/version-specific/supported-software/a/ANTLR.md @@ -15,19 +15,7 @@ version | versionsuffix | toolchain ``2.7.7`` | ``-Java-11`` | ``GCCcore/11.2.0`` ``2.7.7`` | ``-Java-11`` | ``GCCcore/11.3.0`` ``2.7.7`` | ``-Java-11`` | ``GCCcore/12.3.0`` -``2.7.7`` | | ``GCCcore/7.3.0`` -``2.7.7`` | | ``GCCcore/8.2.0`` -``2.7.7`` | ``-Java-11`` | ``GCCcore/8.3.0`` -``2.7.7`` | ``-Java-11`` | ``GCCcore/9.3.0`` -``2.7.7`` | ``-Python-2.7.11`` | ``foss/2016a`` -``2.7.7`` | | ``foss/2017b`` -``2.7.7`` | ``-Python-2.7.14`` | ``foss/2018a`` -``2.7.7`` | | ``foss/2018b`` -``2.7.7`` | | ``foss/2019a`` -``2.7.7`` | ``-Python-2.7.13`` | ``intel/2017a`` -``2.7.7`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.7.7`` | | ``intel/2017b`` -``2.7.7`` | ``-Python-3.6.4`` | ``intel/2018a`` +``2.7.7`` | ``-Java-17`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ANTs.md b/docs/version-specific/supported-software/a/ANTs.md index 2a68169fdf..1bc996334a 100644 --- a/docs/version-specific/supported-software/a/ANTs.md +++ b/docs/version-specific/supported-software/a/ANTs.md @@ -6,17 +6,12 @@ search: ANTs extracts information from complex datasets that include imaging. ANTs is useful for managing, interpreting and visualizing multidimensional data. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.2.0`` | ``-Python-2.7.12`` | ``foss/2016b`` -``2.3.0`` | ``-Python-2.7.14`` | ``foss/2017b`` -``2.3.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.3.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``2.3.2`` | ``-Python-3.7.4`` | ``foss/2019b`` -``2.3.5`` | | ``foss/2021a`` -``2.5.0`` | | ``foss/2022b`` +version | toolchain +--------|---------- +``2.3.5`` | ``foss/2021a`` +``2.5.0`` | ``foss/2022b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/AOCC.md b/docs/version-specific/supported-software/a/AOCC.md index e88d506c0e..a6d12843e1 100644 --- a/docs/version-specific/supported-software/a/AOCC.md +++ b/docs/version-specific/supported-software/a/AOCC.md @@ -11,7 +11,6 @@ AMD Optimized C/C++ & Fortran compilers (AOCC) based on LLVM 11.0 version | toolchain --------|---------- ``2.3.0`` | ``GCCcore/10.2.0`` -``2.3.0`` | ``GCCcore/9.3.0`` ``3.0.0`` | ``GCCcore/10.2.0`` ``3.0.0`` | ``GCCcore/10.3.0`` ``3.1.0`` | ``GCCcore/10.2.0`` @@ -22,6 +21,8 @@ version | toolchain ``4.0.0`` | ``GCCcore/11.3.0`` ``4.0.0`` | ``GCCcore/12.2.0`` ``4.0.0`` | ``GCCcore/12.3.0`` +``4.2.0`` | ``GCCcore/13.3.0`` +``5.0.0`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/AOCL-BLAS.md b/docs/version-specific/supported-software/a/AOCL-BLAS.md new file mode 100644 index 0000000000..7fd4b521a3 --- /dev/null +++ b/docs/version-specific/supported-software/a/AOCL-BLAS.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# AOCL-BLAS + +AOCL-BLAS is AMD's optimized version of BLAS targeted for AMD EPYC and Ryzen CPUs. + +*homepage*: + +version | toolchain +--------|---------- +``5.0`` | ``GCC/13.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/a/AOMP.md b/docs/version-specific/supported-software/a/AOMP.md index 0abb9a317d..57bd43da48 100644 --- a/docs/version-specific/supported-software/a/AOMP.md +++ b/docs/version-specific/supported-software/a/AOMP.md @@ -11,7 +11,6 @@ AMD fork of LLVM, setup for OpenMP offloading to Accelerators version | toolchain --------|---------- ``13.0-2`` | ``GCCcore/10.2.0`` -``13.0-2`` | ``gcccuda/2020a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/APR-util.md b/docs/version-specific/supported-software/a/APR-util.md index 49c9e8d526..f25de9abe7 100644 --- a/docs/version-specific/supported-software/a/APR-util.md +++ b/docs/version-specific/supported-software/a/APR-util.md @@ -14,11 +14,6 @@ version | toolchain ``1.6.1`` | ``GCCcore/10.3.0`` ``1.6.1`` | ``GCCcore/11.2.0`` ``1.6.1`` | ``GCCcore/11.3.0`` -``1.6.1`` | ``GCCcore/6.4.0`` -``1.6.1`` | ``GCCcore/7.3.0`` -``1.6.1`` | ``GCCcore/8.2.0`` -``1.6.1`` | ``GCCcore/9.3.0`` -``1.6.1`` | ``iomkl/2018a`` ``1.6.3`` | ``GCCcore/12.3.0`` ``1.6.3`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/a/APR.md b/docs/version-specific/supported-software/a/APR.md index 6dde76b650..e30097537d 100644 --- a/docs/version-specific/supported-software/a/APR.md +++ b/docs/version-specific/supported-software/a/APR.md @@ -6,19 +6,14 @@ search: Apache Portable Runtime (APR) libraries. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.6.3`` | ``GCCcore/6.4.0`` -``1.6.3`` | ``GCCcore/7.3.0`` -``1.6.3`` | ``iomkl/2018a`` ``1.7.0`` | ``GCCcore/10.2.0`` ``1.7.0`` | ``GCCcore/10.3.0`` ``1.7.0`` | ``GCCcore/11.2.0`` ``1.7.0`` | ``GCCcore/11.3.0`` -``1.7.0`` | ``GCCcore/8.2.0`` -``1.7.0`` | ``GCCcore/9.3.0`` ``1.7.4`` | ``GCCcore/12.3.0`` ``1.7.4`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/a/ARAGORN.md b/docs/version-specific/supported-software/a/ARAGORN.md index 0a2c962d17..26be55c77b 100644 --- a/docs/version-specific/supported-software/a/ARAGORN.md +++ b/docs/version-specific/supported-software/a/ARAGORN.md @@ -6,12 +6,10 @@ search: a program to detect tRNA genes and tmRNA genes in nucleotide sequences -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.2.38`` | ``foss/2016b`` -``1.2.38`` | ``iccifort/2019.5.281`` ``1.2.41`` | ``foss/2021b`` diff --git a/docs/version-specific/supported-software/a/ARGoS.md b/docs/version-specific/supported-software/a/ARGoS.md index 9f93523b20..87dd3fa57f 100644 --- a/docs/version-specific/supported-software/a/ARGoS.md +++ b/docs/version-specific/supported-software/a/ARGoS.md @@ -8,10 +8,9 @@ A parallel, multi-engine simulator for heterogeneous swarm robotics *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0.0-beta53`` | ``-Lua-5.2.4`` | ``foss/2018b`` -``3.0.0-beta59`` | | ``GCC/11.2.0`` +version | toolchain +--------|---------- +``3.0.0-beta59`` | ``GCC/11.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ARPACK++.md b/docs/version-specific/supported-software/a/ARPACK++.md deleted file mode 100644 index 4e0c1536b7..0000000000 --- a/docs/version-specific/supported-software/a/ARPACK++.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ARPACK++ - -Arpackpp is a C++ interface to the ARPACK Fortran package, which implements the implicit restarted Arnoldi method for iteratively solving large-scale sparse eigenvalue problems. - -*homepage*: - -version | toolchain ---------|---------- -``2018.03.26`` | ``foss/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/ARTS.md b/docs/version-specific/supported-software/a/ARTS.md deleted file mode 100644 index 5ab322847c..0000000000 --- a/docs/version-specific/supported-software/a/ARTS.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ARTS - -ARTS is a radiative transfer model for the millimeter and sub-millimeter spectral range. There are a number of models mostly developed explicitly for the different sensors. - -*homepage*: - -version | toolchain ---------|---------- -``2.2.64`` | ``gompi/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/ASAP.md b/docs/version-specific/supported-software/a/ASAP.md index 3b1d217330..67c9b17380 100644 --- a/docs/version-specific/supported-software/a/ASAP.md +++ b/docs/version-specific/supported-software/a/ASAP.md @@ -4,7 +4,7 @@ search: --- # ASAP -ASAP focuses on fast and fluid image viewing with an easy-to-use interface for making annotations. It consists of two main components: an IO library for reading and writing multi-resolution images and a viewer component for visualizing such images. +ASAP focuses on fast and fluid image viewing with an easy-to-use interface for making annotations. It consists of two main components: an IO library for reading and writing multi-resolution images and a viewer component for visualizing such images. *homepage*: diff --git a/docs/version-specific/supported-software/a/ASAP3.md b/docs/version-specific/supported-software/a/ASAP3.md index 67860b3b91..7fd13cdc6d 100644 --- a/docs/version-specific/supported-software/a/ASAP3.md +++ b/docs/version-specific/supported-software/a/ASAP3.md @@ -10,16 +10,6 @@ ASAP is a calculator for doing large-scale classical molecular dynamics within t version | versionsuffix | toolchain --------|---------------|---------- -``3.10.10`` | ``-Python-3.6.6`` | ``foss/2018b`` -``3.10.10`` | ``-Python-3.6.6`` | ``intel/2018b`` -``3.10.10`` | ``-Python-3.6.6`` | ``iomkl/2018b`` -``3.10.7`` | ``-Python-3.5.2`` | ``foss/2016b`` -``3.10.7`` | ``-Python-3.6.2`` | ``foss/2017b`` -``3.10.8`` | ``-Python-3.5.2`` | ``foss/2016b`` -``3.10.8`` | ``-Python-3.6.2`` | ``foss/2017b`` -``3.10.8`` | ``-Python-3.6.3`` | ``foss/2017b`` -``3.11.10`` | ``-Python-3.7.2`` | ``foss/2019a`` -``3.11.10`` | ``-Python-3.7.2`` | ``intel/2019a`` ``3.12.2`` | ``-ASE-3.21.1`` | ``foss/2020b`` ``3.12.2`` | ``-ASE-3.21.1`` | ``intel/2020b`` ``3.12.7`` | ``-ASE-3.21.1`` | ``foss/2020b`` diff --git a/docs/version-specific/supported-software/a/ASE.md b/docs/version-specific/supported-software/a/ASE.md index 50acb4445a..5f56cc6a6d 100644 --- a/docs/version-specific/supported-software/a/ASE.md +++ b/docs/version-specific/supported-software/a/ASE.md @@ -4,68 +4,37 @@ search: --- # ASE -ASE is a python package providing an open source Atomic Simulation Environment in the Python scripting language. +ASE is a python package providing an open source Atomic Simulation Environment in the Python scripting language. From version 3.20.1 we also include the ase-ext package, it contains optional reimplementations in C of functions in ASE. ASE uses it automatically when installed. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.10.0`` | ``-Python-2.7.11`` | ``intel/2016.02-GCC-4.9`` -``3.11.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``3.13.0`` | ``-Python-2.7.12`` | ``foss/2016b`` -``3.13.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``3.15.0`` | ``-Python-2.7.12`` | ``foss/2016b`` -``3.15.0`` | ``-Python-3.5.2`` | ``foss/2016b`` -``3.15.0`` | ``-Python-3.6.2`` | ``foss/2017b`` -``3.15.0`` | ``-Python-3.6.3`` | ``foss/2017b`` -``3.15.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``3.16.2`` | ``-Python-3.6.6`` | ``foss/2018b`` -``3.16.2`` | ``-Python-3.6.6`` | ``intel/2018b`` -``3.16.2`` | ``-Python-3.6.4`` | ``iomkl/2018.02`` -``3.16.2`` | ``-Python-3.6.4`` | ``iomkl/2018a`` -``3.16.2`` | ``-Python-3.6.6`` | ``iomkl/2018b`` -``3.17.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``3.17.0`` | ``-Python-3.7.2`` | ``foss/2019a`` -``3.17.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``3.17.0`` | ``-Python-3.7.2`` | ``intel/2019a`` -``3.17.0`` | ``-Python-3.6.6`` | ``iomkl/2018b`` -``3.18.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``3.18.0`` | ``-Python-3.7.2`` | ``foss/2019a`` -``3.18.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``3.18.0`` | ``-Python-3.7.2`` | ``intel/2019a`` -``3.19.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``3.19.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``3.19.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``3.19.0`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``3.19.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``3.19.0`` | ``-Python-3.7.4`` | ``intel/2019b`` -``3.19.0`` | ``-Python-3.8.2`` | ``intel/2020a`` -``3.20.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``3.20.1`` | | ``foss/2020b`` -``3.20.1`` | | ``fosscuda/2020b`` -``3.20.1`` | ``-Python-3.7.4`` | ``intel/2019b`` -``3.20.1`` | ``-Python-3.8.2`` | ``intel/2020a`` -``3.20.1`` | | ``intel/2020b`` -``3.21.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``3.21.1`` | | ``foss/2020b`` -``3.21.1`` | | ``fosscuda/2020b`` -``3.21.1`` | | ``intel/2020b`` -``3.22.0`` | | ``foss/2020b`` -``3.22.0`` | | ``foss/2021a`` -``3.22.0`` | | ``fosscuda/2020b`` -``3.22.0`` | | ``intel/2020b`` -``3.22.0`` | | ``intel/2021a`` -``3.22.1`` | | ``foss/2021b`` -``3.22.1`` | | ``foss/2022a`` -``3.22.1`` | | ``gfbf/2022b`` -``3.22.1`` | | ``gfbf/2023a`` -``3.22.1`` | | ``gomkl/2021a`` -``3.22.1`` | | ``iimkl/2023a`` -``3.22.1`` | | ``intel/2021b`` -``3.22.1`` | | ``intel/2022a`` -``3.23.0`` | | ``gfbf/2023a`` -``3.23.0`` | | ``iimkl/2023a`` -``3.9.1.4567`` | ``-Python-2.7.11`` | ``intel/2016a`` +version | toolchain +--------|---------- +``3.20.1`` | ``foss/2020b`` +``3.20.1`` | ``fosscuda/2020b`` +``3.20.1`` | ``intel/2020b`` +``3.21.1`` | ``foss/2020b`` +``3.21.1`` | ``fosscuda/2020b`` +``3.21.1`` | ``intel/2020b`` +``3.22.0`` | ``foss/2020b`` +``3.22.0`` | ``foss/2021a`` +``3.22.0`` | ``fosscuda/2020b`` +``3.22.0`` | ``intel/2020b`` +``3.22.0`` | ``intel/2021a`` +``3.22.1`` | ``foss/2021b`` +``3.22.1`` | ``foss/2022a`` +``3.22.1`` | ``gfbf/2022b`` +``3.22.1`` | ``gfbf/2023a`` +``3.22.1`` | ``gomkl/2021a`` +``3.22.1`` | ``iimkl/2023a`` +``3.22.1`` | ``intel/2021b`` +``3.22.1`` | ``intel/2022a`` +``3.23.0`` | ``gfbf/2023a`` +``3.23.0`` | ``gfbf/2023b`` +``3.23.0`` | ``gfbf/2024a`` +``3.23.0`` | ``iimkl/2023a`` +``3.24.0`` | ``gfbf/2023a`` +``3.24.0`` | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ATAT.md b/docs/version-specific/supported-software/a/ATAT.md deleted file mode 100644 index 3ff0b6f3b7..0000000000 --- a/docs/version-specific/supported-software/a/ATAT.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ATAT - -The Alloy-Theoretic Automated Toolkit (ATAT) is a generic name that refers to a collection of alloy theory tools - -*homepage*: - -version | toolchain ---------|---------- -``3.36`` | ``GCCcore/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/ATK.md b/docs/version-specific/supported-software/a/ATK.md index f7d53bea28..0eec220970 100644 --- a/docs/version-specific/supported-software/a/ATK.md +++ b/docs/version-specific/supported-software/a/ATK.md @@ -6,30 +6,13 @@ search: ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.18.0`` | ``intel/2016a`` -``2.20.0`` | ``foss/2016a`` -``2.20.0`` | ``intel/2016a`` -``2.22.0`` | ``foss/2016b`` -``2.22.0`` | ``intel/2016b`` -``2.26.0`` | ``intel/2017a`` -``2.26.1`` | ``foss/2018b`` -``2.26.1`` | ``intel/2017b`` -``2.27.1`` | ``foss/2017b`` -``2.27.1`` | ``intel/2017b`` -``2.28.1`` | ``foss/2018a`` -``2.28.1`` | ``foss/2018b`` -``2.28.1`` | ``fosscuda/2018b`` -``2.28.1`` | ``intel/2018a`` -``2.32.0`` | ``GCCcore/8.2.0`` -``2.34.1`` | ``GCCcore/8.3.0`` ``2.36.0`` | ``GCCcore/10.2.0`` ``2.36.0`` | ``GCCcore/10.3.0`` ``2.36.0`` | ``GCCcore/11.2.0`` -``2.36.0`` | ``GCCcore/9.3.0`` ``2.38.0`` | ``GCCcore/11.3.0`` ``2.38.0`` | ``GCCcore/12.2.0`` ``2.38.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/a/ATLAS.md b/docs/version-specific/supported-software/a/ATLAS.md deleted file mode 100644 index 2fdb3ccf35..0000000000 --- a/docs/version-specific/supported-software/a/ATLAS.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ATLAS - -ATLAS (Automatically Tuned Linear Algebra Software) is the application of the AEOS (Automated Empirical Optimization of Software) paradigm, with the present emphasis on the Basic Linear Algebra Subprograms (BLAS), a widely used, performance-critical, linear algebra kernel library. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.10.2`` | ``-LAPACK-3.6.1`` | ``GCC/5.4.0-2.26`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/ATSAS.md b/docs/version-specific/supported-software/a/ATSAS.md deleted file mode 100644 index cdf18b231b..0000000000 --- a/docs/version-specific/supported-software/a/ATSAS.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ATSAS - -ATSAS is a program suite for small-angle scattering data analysis from biological macromolecules. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.5.1-1`` | ``.el6.x86_64`` | ``system`` -``2.5.1-1`` | ``.sl5.x86_64`` | ``system`` -``2.7.1-1`` | ``.el7.x86_64`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/AUGUSTUS.md b/docs/version-specific/supported-software/a/AUGUSTUS.md index 7f93f28caf..8dc9317b3d 100644 --- a/docs/version-specific/supported-software/a/AUGUSTUS.md +++ b/docs/version-specific/supported-software/a/AUGUSTUS.md @@ -6,25 +6,16 @@ search: AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.2.3`` | ``-Python-2.7.13`` | ``intel/2017a`` -``3.3`` | | ``foss/2018a`` -``3.3.2`` | ``-Python-2.7.14`` | ``foss/2017b`` -``3.3.2`` | ``-Python-2.7.13`` | ``intel/2017a`` -``3.3.2`` | ``-Python-2.7.14`` | ``intel/2017b`` -``3.3.2`` | ``-Python-2.7.15`` | ``intel/2018b`` -``3.3.2`` | | ``intel/2019a`` -``3.3.3`` | | ``foss/2019b`` -``3.3.3`` | | ``intel/2019b`` -``3.4.0`` | | ``foss/2020a`` -``3.4.0`` | | ``foss/2020b`` -``3.4.0`` | | ``foss/2021a`` -``3.4.0`` | | ``foss/2021b`` -``3.5.0`` | | ``foss/2022a`` -``3.5.0`` | | ``foss/2022b`` +version | toolchain +--------|---------- +``3.4.0`` | ``foss/2020b`` +``3.4.0`` | ``foss/2021a`` +``3.4.0`` | ``foss/2021b`` +``3.5.0`` | ``foss/2022a`` +``3.5.0`` | ``foss/2022b`` +``3.5.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/AdapterRemoval.md b/docs/version-specific/supported-software/a/AdapterRemoval.md index cfd8b01348..2642f4221c 100644 --- a/docs/version-specific/supported-software/a/AdapterRemoval.md +++ b/docs/version-specific/supported-software/a/AdapterRemoval.md @@ -10,9 +10,6 @@ AdapterRemoval searches for and removes remnant adapter sequences from High-Thr version | toolchain --------|---------- -``2.2.0`` | ``foss/2016b`` -``2.2.2`` | ``foss/2018b`` -``2.3.1`` | ``foss/2018b`` ``2.3.2`` | ``GCC/10.2.0`` ``2.3.2`` | ``GCC/10.3.0`` ``2.3.2`` | ``GCC/11.2.0`` diff --git a/docs/version-specific/supported-software/a/Advisor.md b/docs/version-specific/supported-software/a/Advisor.md index e9bfd99448..80e34ede3f 100644 --- a/docs/version-specific/supported-software/a/Advisor.md +++ b/docs/version-specific/supported-software/a/Advisor.md @@ -10,18 +10,12 @@ Vectorization Optimization and Thread Prototyping - Vectorize & thread code or version | toolchain --------|---------- -``2016_update2`` | ``system`` -``2017_update1`` | ``system`` -``2018_update1`` | ``system`` -``2018_update3`` | ``system`` -``2019_update2`` | ``system`` -``2019_update3`` | ``system`` -``2019_update5`` | ``system`` ``2021.2.0`` | ``system`` ``2021.4.0`` | ``system`` ``2022.1.0`` | ``system`` ``2023.0.0`` | ``system`` ``2023.2.0`` | ``system`` +``2025.0.0`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/Albacore.md b/docs/version-specific/supported-software/a/Albacore.md deleted file mode 100644 index 7062c665b2..0000000000 --- a/docs/version-specific/supported-software/a/Albacore.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Albacore - -Albacore is a software project that provides an entry point to the Oxford Nanopore basecalling algorithms. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0.2`` | ``-Python-3.6.1`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/Allinea.md b/docs/version-specific/supported-software/a/Allinea.md deleted file mode 100644 index ed4dfbe95e..0000000000 --- a/docs/version-specific/supported-software/a/Allinea.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Allinea - -The Allinea environment is an essential toolkit for developers and computational scientists looking to get results faster. - -*homepage*: - -version | toolchain ---------|---------- -``4.1-32834-Redhat-5.7-x86_64`` | ``system`` -``4.1-32834-Redhat-6.0-x86_64`` | ``system`` -``6.1.1-Ubuntu-14.04-x86_64`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/AlphaFold.md b/docs/version-specific/supported-software/a/AlphaFold.md index d93001eafd..d06a065e16 100644 --- a/docs/version-specific/supported-software/a/AlphaFold.md +++ b/docs/version-specific/supported-software/a/AlphaFold.md @@ -24,6 +24,7 @@ version | versionsuffix | toolchain ``2.3.0`` | ``-CUDA-11.4.1`` | ``foss/2021b`` ``2.3.1`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``2.3.1`` | | ``foss/2022a`` +``2.3.2`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``2.3.4`` | ``-CUDA-11.7.0-ColabFold`` | ``foss/2022a`` ``2.3.4`` | ``-ColabFold`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/a/AlphaPulldown.md b/docs/version-specific/supported-software/a/AlphaPulldown.md index cf7ed04fe2..9e404ed58e 100644 --- a/docs/version-specific/supported-software/a/AlphaPulldown.md +++ b/docs/version-specific/supported-software/a/AlphaPulldown.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``0.30.4`` | | ``foss/2020b`` ``0.30.4`` | | ``fosscuda/2020b`` +``2.0.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``2.0.0b4`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``2.0.0b4`` | | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/a/Amara.md b/docs/version-specific/supported-software/a/Amara.md deleted file mode 100644 index 54003b93fd..0000000000 --- a/docs/version-specific/supported-software/a/Amara.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Amara - -Library for XML processing in Python, designed to balance the native idioms of Python with the native character of XML. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.0.2`` | ``-Python-2.7.15`` | ``foss/2019a`` -``1.2.0.2`` | ``-Python-2.7.15`` | ``intel/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/Amber.md b/docs/version-specific/supported-software/a/Amber.md index b4368bc3d0..86ec9185ff 100644 --- a/docs/version-specific/supported-software/a/Amber.md +++ b/docs/version-specific/supported-software/a/Amber.md @@ -4,32 +4,13 @@ search: --- # Amber -Amber (originally Assisted Model Building with Energy Refinement) is software for performing molecular dynamics and structure prediction. +Amber (originally Assisted Model Building with Energy Refinement) is software for performing molecular dynamics and structure prediction. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``14`` | ``-AmberTools-15-patchlevel-13-13`` | ``intel/2016a`` -``16`` | ``-AmberTools-17-patchlevel-10-15-Python-2.7.14`` | ``foss/2017b`` -``16`` | ``-AmberTools-17-patchlevel-10-15`` | ``foss/2018b`` -``16`` | ``-AmberTools-17-patchlevel-10-15-Python-2.7.14`` | ``fosscuda/2017b`` -``16`` | ``-AmberTools-17-patchlevel-10-15`` | ``fosscuda/2018b`` -``16`` | ``-AmberTools-17-patchlevel-10-15-Python-2.7.14`` | ``intel/2017b`` -``16`` | ``-AmberTools-17-patchlevel-8-12`` | ``intel/2017b`` -``16`` | ``-AmberTools-17-patchlevel-10-15`` | ``intel/2018b`` -``16`` | ``-AmberTools-17-patchlevel-10-15-Python-2.7.14`` | ``intelcuda/2017b`` -``16`` | ``-AmberTools-16-patchlevel-5-14-serial`` | ``iomkl/2016.07`` -``16`` | ``-AmberTools-16-patchlevel-5-14`` | ``iomkl/2016.07`` -``16`` | ``-AmberTools-16-patchlevel-5-14-CUDA`` | ``iomkl/2016.09-GCC-4.9.3-2.25`` -``18`` | ``-AmberTools-18-patchlevel-10-8`` | ``foss/2018b`` -``18`` | ``-AmberTools-19-patchlevel-12-17-Python-2.7.16`` | ``foss/2019b`` -``18`` | ``-AmberTools-18-patchlevel-10-8`` | ``fosscuda/2018b`` -``18`` | ``-AmberTools-19-patchlevel-12-17-Python-2.7.16`` | ``fosscuda/2019b`` -``18`` | ``-AmberTools-18-patchlevel-10-8`` | ``intel/2017b`` -``20.11`` | ``-AmberTools-20.15-Python-3.8.2`` | ``foss/2020a`` ``20.11`` | ``-AmberTools-21.3`` | ``foss/2020b`` -``20.11`` | ``-AmberTools-20.15-Python-3.8.2`` | ``fosscuda/2020a`` ``20.11`` | ``-AmberTools-21.3`` | ``fosscuda/2020b`` ``22.0`` | ``-AmberTools-22.3-CUDA-11.4.1`` | ``foss/2021b`` ``22.0`` | ``-AmberTools-22.3`` | ``foss/2021b`` diff --git a/docs/version-specific/supported-software/a/AmberMini.md b/docs/version-specific/supported-software/a/AmberMini.md deleted file mode 100644 index 4cae084a17..0000000000 --- a/docs/version-specific/supported-software/a/AmberMini.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# AmberMini - -A stripped-down set of just antechamber, sqm, and tleap. - -*homepage*: - -version | toolchain ---------|---------- -``16.16.0`` | ``intel/2017b`` -``16.16.0`` | ``intel/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/AmberTools.md b/docs/version-specific/supported-software/a/AmberTools.md index 8efaf6487e..0806704fcd 100644 --- a/docs/version-specific/supported-software/a/AmberTools.md +++ b/docs/version-specific/supported-software/a/AmberTools.md @@ -8,17 +8,13 @@ AmberTools consists of several independently developed packages that work well b *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``17`` | ``-Python-2.7.14`` | ``foss/2018a`` -``17`` | | ``intel/2017b`` -``17`` | | ``intel/2018a`` -``20`` | ``-Python-3.8.2`` | ``intel/2020a`` -``21`` | | ``foss/2021a`` -``21`` | | ``intel/2021b`` -``21.12`` | | ``foss/2021b`` -``22.3`` | | ``foss/2021b`` -``23.6`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``21`` | ``foss/2021a`` +``21`` | ``intel/2021b`` +``21.12`` | ``foss/2021b`` +``22.3`` | ``foss/2021b`` +``23.6`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/AmrPlusPlus.md b/docs/version-specific/supported-software/a/AmrPlusPlus.md deleted file mode 100644 index a39e69dd43..0000000000 --- a/docs/version-specific/supported-software/a/AmrPlusPlus.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# AmrPlusPlus - -AmrPlusPlus v2.0 can process the raw data from the sequencer, identify the fragments of DNA, and count them. It also provides a count of the polymorphisms that occur in each DNA fragment with respect to the reference database. - -*homepage*: - -version | toolchain ---------|---------- -``2.0-20200114`` | ``GCC/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/Anaconda2.md b/docs/version-specific/supported-software/a/Anaconda2.md deleted file mode 100644 index 2d741c1e55..0000000000 --- a/docs/version-specific/supported-software/a/Anaconda2.md +++ /dev/null @@ -1,26 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Anaconda2 - -Built to complement the rich, open source Python community, the Anaconda platform provides an enterprise-ready data analytics platform that empowers companies to adopt a modern open data science analytics architecture. - -*homepage*: - -version | toolchain ---------|---------- -``2018.12`` | ``system`` -``2019.03`` | ``system`` -``2019.07`` | ``system`` -``2019.10`` | ``system`` -``4.0.0`` | ``system`` -``4.2.0`` | ``system`` -``4.4.0`` | ``system`` -``5.0.1`` | ``system`` -``5.1.0`` | ``system`` -``5.3.0`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/Anaconda3.md b/docs/version-specific/supported-software/a/Anaconda3.md index 6d971899a5..46742e0b7f 100644 --- a/docs/version-specific/supported-software/a/Anaconda3.md +++ b/docs/version-specific/supported-software/a/Anaconda3.md @@ -4,16 +4,12 @@ search: --- # Anaconda3 -Built to complement the rich, open source Python community, the Anaconda platform provides an enterprise-ready data analytics platform that empowers companies to adopt a modern open data science analytics architecture. +Built to complement the rich, open source Python community, the Anaconda platform provides an enterprise-ready data analytics platform that empowers companies to adopt a modern open data science analytics architecture. *homepage*: version | toolchain --------|---------- -``2018.12`` | ``system`` -``2019.03`` | ``system`` -``2019.07`` | ``system`` -``2019.10`` | ``system`` ``2020.02`` | ``system`` ``2020.07`` | ``system`` ``2020.11`` | ``system`` @@ -25,12 +21,7 @@ version | toolchain ``2023.07-2`` | ``system`` ``2023.09-0`` | ``system`` ``2024.02-1`` | ``system`` -``4.0.0`` | ``system`` -``4.2.0`` | ``system`` -``4.4.0`` | ``system`` -``5.0.1`` | ``system`` -``5.1.0`` | ``system`` -``5.3.0`` | ``system`` +``2024.06-1`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/Annif.md b/docs/version-specific/supported-software/a/Annif.md deleted file mode 100644 index 06a64c749b..0000000000 --- a/docs/version-specific/supported-software/a/Annif.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Annif - -Annif is a multi-algorithm automated subject indexing tool for libraries, archives and museums. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.40.0`` | ``-Python-3.7.2`` | ``foss/2019a`` -``0.40.0`` | ``-Python-3.7.2`` | ``intel/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/AptaSUITE.md b/docs/version-specific/supported-software/a/AptaSUITE.md deleted file mode 100644 index 99198eafea..0000000000 --- a/docs/version-specific/supported-software/a/AptaSUITE.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# AptaSUITE - -A full-featured bioinformatics software collection for the comprehensive analysis of aptamers in HT-SELEX experiments - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.9.4`` | ``-Java-11`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/Arb.md b/docs/version-specific/supported-software/a/Arb.md index 251f0ac170..1931e601d8 100644 --- a/docs/version-specific/supported-software/a/Arb.md +++ b/docs/version-specific/supported-software/a/Arb.md @@ -6,14 +6,10 @@ search: Arb is a C library for arbitrary-precision interval arithmetic. It has full support for both real and complex numbers. The library is thread-safe, portable, and extensively tested. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.16.0`` | ``GCC/7.3.0-2.30`` -``2.16.0`` | ``GCC/8.2.0-2.31.1`` -``2.16.0`` | ``iccifort/2018.3.222-GCC-7.3.0-2.30`` -``2.17.0`` | ``GCC/8.3.0`` ``2.19.0`` | ``GCC/10.3.0`` ``2.22.1`` | ``foss/2021b`` ``2.23.0`` | ``gfbf/2022a`` diff --git a/docs/version-specific/supported-software/a/Archive-Zip.md b/docs/version-specific/supported-software/a/Archive-Zip.md index 7d289e4ee1..94a435278c 100644 --- a/docs/version-specific/supported-software/a/Archive-Zip.md +++ b/docs/version-specific/supported-software/a/Archive-Zip.md @@ -15,6 +15,9 @@ version | toolchain ``1.68`` | ``GCCcore/11.2.0`` ``1.68`` | ``GCCcore/11.3.0`` ``1.68`` | ``GCCcore/12.2.0`` +``1.68`` | ``GCCcore/12.3.0`` +``1.68`` | ``GCCcore/13.2.0`` +``1.68`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/AreTomo2.md b/docs/version-specific/supported-software/a/AreTomo2.md index ec4ae7301a..19580879d6 100644 --- a/docs/version-specific/supported-software/a/AreTomo2.md +++ b/docs/version-specific/supported-software/a/AreTomo2.md @@ -4,7 +4,7 @@ search: --- # AreTomo2 -AreTomo2, a multi-GPU accelerated software package that fully automates motion- corrected marker-free tomographic alignment and reconstruction, now includes robust GPU-accelerated CTF (Contrast Transfer Function) estimation in a single package. AreTomo2 is part of our endeavor to build a fully-automated high- throughput processing pipeline that enables real-time reconstruction of tomograms in parallel with tomographic data collection. It strives to be fast and accurate, as well as provides for easy integration into subtomogram processing workflows by generating IMod compatible files containing alignment and CTF parameters needed to bootstrap subtomogram averaging. AreTomo2 can also be used for on-the-fly reconstruction of tomograms and CTF estimation in parallel with tilt series collection, enabling real-time assessment of sample quality and adjustment of collection parameters +AreTomo2, a multi-GPU accelerated software package that fully automates motion- corrected marker-free tomographic alignment and reconstruction, now includes robust GPU-accelerated CTF (Contrast Transfer Function) estimation in a single package. AreTomo2 is part of our endeavor to build a fully-automated high- throughput processing pipeline that enables real-time reconstruction of tomograms in parallel with tomographic data collection. It strives to be fast and accurate, as well as provides for easy integration into subtomogram processing workflows by generating IMod compatible files containing alignment and CTF parameters needed to bootstrap subtomogram averaging. AreTomo2 can also be used for on-the-fly reconstruction of tomograms and CTF estimation in parallel with tilt series collection, enabling real-time assessment of sample quality and adjustment of collection parameters *homepage*: diff --git a/docs/version-specific/supported-software/a/Arlequin.md b/docs/version-specific/supported-software/a/Arlequin.md deleted file mode 100644 index 4b5b3e6525..0000000000 --- a/docs/version-specific/supported-software/a/Arlequin.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Arlequin - -Arlequin: An Integrated Software for Population Genetics Data Analysis - -*homepage*: - -version | toolchain ---------|---------- -``3.5.2.2`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/Armadillo.md b/docs/version-specific/supported-software/a/Armadillo.md index d8002012b7..3ba078e597 100644 --- a/docs/version-specific/supported-software/a/Armadillo.md +++ b/docs/version-specific/supported-software/a/Armadillo.md @@ -8,25 +8,15 @@ Armadillo is an open-source C++ linear algebra library (matrix maths) aiming tow *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``10.5.3`` | | ``foss/2020b`` -``10.7.5`` | | ``foss/2021a`` -``11.4.3`` | | ``foss/2022a`` -``11.4.3`` | | ``foss/2022b`` -``12.6.2`` | | ``foss/2023a`` -``12.8.0`` | | ``foss/2023b`` -``7.600.2`` | ``-Python-2.7.12`` | ``foss/2016b`` -``7.800.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``7.950.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``8.300.1`` | | ``foss/2017b`` -``8.300.1`` | | ``intel/2017b`` -``8.400.0`` | | ``foss/2018a`` -``9.600.5`` | | ``foss/2018b`` -``9.700.2`` | | ``foss/2019a`` -``9.880.1`` | | ``foss/2020a`` -``9.900.1`` | | ``foss/2019b`` -``9.900.1`` | | ``foss/2020a`` +version | toolchain +--------|---------- +``10.5.3`` | ``foss/2020b`` +``10.7.5`` | ``foss/2021a`` +``11.4.3`` | ``foss/2022a`` +``11.4.3`` | ``foss/2022b`` +``12.6.2`` | ``foss/2023a`` +``12.8.0`` | ``foss/2023b`` +``14.0.3`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ArrayFire.md b/docs/version-specific/supported-software/a/ArrayFire.md deleted file mode 100644 index 8a231136b8..0000000000 --- a/docs/version-specific/supported-software/a/ArrayFire.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ArrayFire - -ArrayFire is a general-purpose library that simplifies the process of developing software that targets parallel and massively-parallel architectures including CPUs, GPUs, and other hardware acceleration devices. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.6.4`` | ``-CUDA-9.2.88`` | ``foss/2018b`` -``3.6.4`` | | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/Arriba.md b/docs/version-specific/supported-software/a/Arriba.md index e7aceb36c1..afd18d7902 100644 --- a/docs/version-specific/supported-software/a/Arriba.md +++ b/docs/version-specific/supported-software/a/Arriba.md @@ -10,7 +10,6 @@ Arriba is a command-line tool for the detection of gene fusions from RNA-Seq dat version | toolchain --------|---------- -``1.1.0`` | ``foss/2018b`` ``2.1.0`` | ``GCC/10.2.0`` ``2.1.0`` | ``GCC/10.3.0`` ``2.2.1`` | ``GCC/11.2.0`` diff --git a/docs/version-specific/supported-software/a/Arrow.md b/docs/version-specific/supported-software/a/Arrow.md index e1658c4212..41c7b1bdda 100644 --- a/docs/version-specific/supported-software/a/Arrow.md +++ b/docs/version-specific/supported-software/a/Arrow.md @@ -8,29 +8,22 @@ Apache Arrow (incl. PyArrow Python bindings), a cross-language development platf *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.12.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``0.12.0`` | ``-Python-2.7.15`` | ``intel/2018b`` -``0.12.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``0.16.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.16.0`` | ``-Python-3.7.4`` | ``intel/2019b`` -``0.17.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``0.17.1`` | | ``foss/2020b`` -``0.17.1`` | | ``fosscuda/2020b`` -``0.17.1`` | ``-Python-3.8.2`` | ``intel/2020a`` -``0.17.1`` | | ``intel/2020b`` -``0.7.1`` | ``-Python-3.6.3`` | ``intel/2017b`` -``11.0.0`` | | ``gfbf/2022b`` -``14.0.1`` | | ``gfbf/2023a`` -``16.1.0`` | | ``gfbf/2023b`` -``6.0.0`` | | ``foss/2021a`` -``6.0.0`` | | ``foss/2021b`` -``6.0.1`` | | ``foss/2021a`` -``8.0.0`` | | ``foss/2021a`` -``8.0.0`` | | ``foss/2021b`` -``8.0.0`` | | ``foss/2022.05`` -``8.0.0`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``0.17.1`` | ``foss/2020b`` +``0.17.1`` | ``fosscuda/2020b`` +``0.17.1`` | ``intel/2020b`` +``11.0.0`` | ``gfbf/2022b`` +``14.0.1`` | ``gfbf/2023a`` +``16.1.0`` | ``gfbf/2023b`` +``17.0.0`` | ``gfbf/2024a`` +``6.0.0`` | ``foss/2021a`` +``6.0.0`` | ``foss/2021b`` +``6.0.1`` | ``foss/2021a`` +``8.0.0`` | ``foss/2021a`` +``8.0.0`` | ``foss/2021b`` +``8.0.0`` | ``foss/2022.05`` +``8.0.0`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ArviZ.md b/docs/version-specific/supported-software/a/ArviZ.md index f9bb848fac..e903481021 100644 --- a/docs/version-specific/supported-software/a/ArviZ.md +++ b/docs/version-specific/supported-software/a/ArviZ.md @@ -8,17 +8,15 @@ Exploratory analysis of Bayesian models with Python *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.11.1`` | | ``intel/2020b`` -``0.11.4`` | | ``foss/2021b`` -``0.11.4`` | | ``intel/2021b`` -``0.12.1`` | | ``foss/2021a`` -``0.12.1`` | | ``foss/2022a`` -``0.12.1`` | | ``intel/2022a`` -``0.16.1`` | | ``foss/2023a`` -``0.7.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.7.0`` | ``-Python-3.7.4`` | ``intel/2019b`` +version | toolchain +--------|---------- +``0.11.1`` | ``intel/2020b`` +``0.11.4`` | ``foss/2021b`` +``0.11.4`` | ``intel/2021b`` +``0.12.1`` | ``foss/2021a`` +``0.12.1`` | ``foss/2022a`` +``0.12.1`` | ``intel/2022a`` +``0.16.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/Aspera-CLI.md b/docs/version-specific/supported-software/a/Aspera-CLI.md index 8bf1ab3ab3..199f2b670c 100644 --- a/docs/version-specific/supported-software/a/Aspera-CLI.md +++ b/docs/version-specific/supported-software/a/Aspera-CLI.md @@ -6,12 +6,10 @@ search: IBM Aspera Command-Line Interface (the Aspera CLI) is a collection of Aspera tools for performing high-speed, secure data transfers from the command line. The Aspera CLI is for users and organizations who want to automate their transfer workflows. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``3.7.2`` | ``.354.010c3b8`` | ``system`` -``3.9.0`` | ``.1326.6985b21`` | ``system`` ``3.9.6`` | ``.1467.159c5b1`` | ``system`` diff --git a/docs/version-specific/supported-software/a/Aspera-Connect.md b/docs/version-specific/supported-software/a/Aspera-Connect.md deleted file mode 100644 index 1cd1afdd81..0000000000 --- a/docs/version-specific/supported-software/a/Aspera-Connect.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Aspera-Connect - -Connect is an install-on-demand Web browser plug-in that facilitates high-speed uploads and downloads with an Aspera transfer server. - -*homepage*: - -version | toolchain ---------|---------- -``3.6.1`` | ``system`` -``3.9.6`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/AMD-LibM.md b/docs/version-specific/supported-software/a/Atomsk.md similarity index 70% rename from docs/version-specific/supported-software/a/AMD-LibM.md rename to docs/version-specific/supported-software/a/Atomsk.md index 31847b0cd8..1fc9841f1d 100644 --- a/docs/version-specific/supported-software/a/AMD-LibM.md +++ b/docs/version-specific/supported-software/a/Atomsk.md @@ -2,16 +2,15 @@ search: boost: 0.5 --- -# AMD-LibM +# Atomsk -AMD LibM is a software library containing a collection of basic math functions optimized for x86-64 processor based machines. +Atomsk is a free, Open Source command-line program dedicated to the creation, manipulation, and conversion of data files for atomic-scale simulations in the field of computational materials sciences -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.2.2`` | ``GCC/7.3.0-2.30`` -``3.6.0-4`` | ``GCC/9.3.0`` +``0.13.1`` | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ADIOS.md b/docs/version-specific/supported-software/a/Auto-WEKA.md similarity index 52% rename from docs/version-specific/supported-software/a/ADIOS.md rename to docs/version-specific/supported-software/a/Auto-WEKA.md index e93a224b21..fc090849b8 100644 --- a/docs/version-specific/supported-software/a/ADIOS.md +++ b/docs/version-specific/supported-software/a/Auto-WEKA.md @@ -2,17 +2,15 @@ search: boost: 0.5 --- -# ADIOS +# Auto-WEKA -The Adaptable IO System (ADIOS) provides a simple, flexible way for scientists to describe the data in their code that may need to be written, read, or processed outside of the running simulation. +Auto-WEKA considers the problem of simultaneously selecting a learning algorithm and setting its hyperparameters, going beyond previous methods that address these issues in isolation. Auto-WEKA does this using a fully automated approach, leveraging recent innovations in Bayesian optimization. Our hope is that Auto-WEKA will help non-expert users to more effectively identify machine learning algorithms and hyperparameter settings appropriate to their applications, and hence to achieve improved performance. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.13.1`` | ``-Python-2.7.15`` | ``foss/2019a`` -``1.13.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``20210804`` | ``-Python-3.8.2`` | ``foss/2020a`` +``2.6`` | ``-WEKA-3.8.5-Java-11`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/AutoDock-GPU.md b/docs/version-specific/supported-software/a/AutoDock-GPU.md index 5ae1191e17..821cc45d95 100644 --- a/docs/version-specific/supported-software/a/AutoDock-GPU.md +++ b/docs/version-specific/supported-software/a/AutoDock-GPU.md @@ -4,7 +4,7 @@ search: --- # AutoDock-GPU -OpenCL and Cuda accelerated version of AutoDock. It leverages its embarrasingly parallelizable LGA by processing ligand-receptor poses in parallel over multiple compute units. AutoDock is a suite of automated docking tools. It is designed to predict how small molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure. +OpenCL and Cuda accelerated version of AutoDock. It leverages its embarrassingly parallelizable LGA by processing ligand-receptor poses in parallel over multiple compute units. AutoDock is a suite of automated docking tools. It is designed to predict how small molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure. *homepage*: diff --git a/docs/version-specific/supported-software/a/AutoDock.md b/docs/version-specific/supported-software/a/AutoDock.md index 140a8319ee..cee3ba0366 100644 --- a/docs/version-specific/supported-software/a/AutoDock.md +++ b/docs/version-specific/supported-software/a/AutoDock.md @@ -4,13 +4,12 @@ search: --- # AutoDock -AutoDock is a suite of automated docking tools. It is designed to predict how small molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure. +AutoDock is a suite of automated docking tools. It is designed to predict how small molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure. *homepage*: version | toolchain --------|---------- -``4.2.5.1`` | ``GCC/5.2.0`` ``4.2.6`` | ``GCC/10.3.0`` diff --git a/docs/version-specific/supported-software/a/AutoDockSuite.md b/docs/version-specific/supported-software/a/AutoDockSuite.md deleted file mode 100644 index fd696174e0..0000000000 --- a/docs/version-specific/supported-software/a/AutoDockSuite.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# AutoDockSuite - -AutoDock is a suite of automated docking tools. It is designed to predict how small molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure. - -*homepage*: - -version | toolchain ---------|---------- -``4.2.6`` | ``GCCcore/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/AutoGrid.md b/docs/version-specific/supported-software/a/AutoGrid.md deleted file mode 100644 index b0fb2d1c87..0000000000 --- a/docs/version-specific/supported-software/a/AutoGrid.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# AutoGrid - -AutoDock is a suite of automated docking tools. It is designed to predict how small molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure. - -*homepage*: - -version | toolchain ---------|---------- -``4.2.5.1`` | ``GCC/5.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/Autoconf-archive.md b/docs/version-specific/supported-software/a/Autoconf-archive.md index 35b75993b2..fda9cce974 100644 --- a/docs/version-specific/supported-software/a/Autoconf-archive.md +++ b/docs/version-specific/supported-software/a/Autoconf-archive.md @@ -4,13 +4,12 @@ search: --- # Autoconf-archive -The GNU Autoconf Archive is a collection of more than 500 macros for GNU Autoconf that have been contributed as free software by friendly supporters of the cause from all over the Internet. Every single one of those macros can be re-used without imposing any restrictions whatsoever on the licensing of the generated configure script. In particular, it is possible to use all those macros in configure scripts that are meant for non-free software. This policy is unusual for a Free Software Foundation project. The FSF firmly believes that software ought to be free, and software licenses like the GPL are specifically designed to ensure that derivative work based on free software must be free as well. In case of Autoconf, however, an exception has been made, because Autoconf is at such a pivotal position in the software development tool chain that the benefits from having this tool available as widely as possible outweigh the disadvantage that some authors may choose to use it, too, for proprietary software. +The GNU Autoconf Archive is a collection of more than 500 macros for GNU Autoconf that have been contributed as free software by friendly supporters of the cause from all over the Internet. Every single one of those macros can be re-used without imposing any restrictions whatsoever on the licensing of the generated configure script. In particular, it is possible to use all those macros in configure scripts that are meant for non-free software. This policy is unusual for a Free Software Foundation project. The FSF firmly believes that software ought to be free, and software licenses like the GPL are specifically designed to ensure that derivative work based on free software must be free as well. In case of Autoconf, however, an exception has been made, because Autoconf is at such a pivotal position in the software development tool chain that the benefits from having this tool available as widely as possible outweigh the disadvantage that some authors may choose to use it, too, for proprietary software. *homepage*: version | toolchain --------|---------- -``2019.01.06`` | ``GCC/8.2.0-2.31.1`` ``2021.02.19`` | ``GCCcore/10.2.0`` ``2023.02.20`` | ``GCCcore/11.3.0`` ``2023.02.20`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/a/Autoconf.md b/docs/version-specific/supported-software/a/Autoconf.md index 5298f2b3da..faf9e5a23f 100644 --- a/docs/version-specific/supported-software/a/Autoconf.md +++ b/docs/version-specific/supported-software/a/Autoconf.md @@ -4,47 +4,13 @@ search: --- # Autoconf -Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls. +Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.68`` | ``foss/2016b`` -``2.69`` | ``GCC/4.8.2`` -``2.69`` | ``GCC/4.8.4`` -``2.69`` | ``GCC/4.9.2`` -``2.69`` | ``GCC/4.9.3-2.25`` -``2.69`` | ``GCC/4.9.3`` -``2.69`` | ``GCC/5.2.0`` -``2.69`` | ``GCC/5.4.0-2.26`` ``2.69`` | ``GCCcore/10.2.0`` -``2.69`` | ``GCCcore/4.9.2`` -``2.69`` | ``GCCcore/4.9.3`` -``2.69`` | ``GCCcore/5.3.0`` -``2.69`` | ``GCCcore/5.4.0`` -``2.69`` | ``GCCcore/6.1.0`` -``2.69`` | ``GCCcore/6.2.0`` -``2.69`` | ``GCCcore/6.3.0`` -``2.69`` | ``GCCcore/6.4.0`` -``2.69`` | ``GCCcore/7.2.0`` -``2.69`` | ``GCCcore/7.3.0`` -``2.69`` | ``GCCcore/8.2.0`` -``2.69`` | ``GCCcore/8.3.0`` -``2.69`` | ``GCCcore/9.2.0`` -``2.69`` | ``GCCcore/9.3.0`` -``2.69`` | ``GNU/4.9.2-2.25`` -``2.69`` | ``GNU/4.9.3-2.25`` -``2.69`` | ``GNU/5.1.0-2.25`` -``2.69`` | ``foss/2016.04`` -``2.69`` | ``foss/2016a`` -``2.69`` | ``foss/2016b`` -``2.69`` | ``gimkl/2.11.5`` -``2.69`` | ``intel/2016.02-GCC-4.9`` -``2.69`` | ``intel/2016a`` -``2.69`` | ``intel/2016b`` -``2.69`` | ``iomkl/2016.07`` -``2.69`` | ``iomkl/2016.09-GCC-4.9.3-2.25`` ``2.69`` | ``system`` ``2.71`` | ``GCCcore/10.3.0`` ``2.71`` | ``GCCcore/11.2.0`` @@ -55,6 +21,7 @@ version | toolchain ``2.71`` | ``GCCcore/13.2.0`` ``2.71`` | ``system`` ``2.72`` | ``GCCcore/13.3.0`` +``2.72`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/Automake.md b/docs/version-specific/supported-software/a/Automake.md index e14abe9b99..bfccffb572 100644 --- a/docs/version-specific/supported-software/a/Automake.md +++ b/docs/version-specific/supported-software/a/Automake.md @@ -6,50 +6,10 @@ search: Automake: GNU Standards-compliant Makefile generator -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.11.3`` | ``foss/2016b`` -``1.14`` | ``GCC/4.8.2`` -``1.14`` | ``intel/2016a`` -``1.14.1`` | ``GCC/4.8.2`` -``1.15`` | ``GCC/4.8.4`` -``1.15`` | ``GCC/4.9.2`` -``1.15`` | ``GCC/4.9.3-2.25`` -``1.15`` | ``GCC/4.9.3`` -``1.15`` | ``GCC/5.2.0`` -``1.15`` | ``GCC/5.4.0-2.26`` -``1.15`` | ``GCCcore/4.9.2`` -``1.15`` | ``GCCcore/4.9.3`` -``1.15`` | ``GCCcore/5.3.0`` -``1.15`` | ``GCCcore/5.4.0`` -``1.15`` | ``GCCcore/6.1.0`` -``1.15`` | ``GCCcore/6.2.0`` -``1.15`` | ``GCCcore/6.3.0`` -``1.15`` | ``GNU/4.9.2-2.25`` -``1.15`` | ``GNU/4.9.3-2.25`` -``1.15`` | ``GNU/5.1.0-2.25`` -``1.15`` | ``foss/2016.04`` -``1.15`` | ``foss/2016a`` -``1.15`` | ``foss/2016b`` -``1.15`` | ``gimkl/2.11.5`` -``1.15`` | ``intel/2016.02-GCC-4.9`` -``1.15`` | ``intel/2016a`` -``1.15`` | ``intel/2016b`` -``1.15`` | ``iomkl/2016.07`` -``1.15`` | ``iomkl/2016.09-GCC-4.9.3-2.25`` -``1.15.1`` | ``GCCcore/6.4.0`` -``1.15.1`` | ``GCCcore/7.2.0`` -``1.15.1`` | ``GCCcore/7.3.0`` -``1.15.1`` | ``GCCcore/8.3.0`` -``1.15`` | ``system`` -``1.16.1`` | ``GCCcore/6.4.0`` -``1.16.1`` | ``GCCcore/7.3.0`` -``1.16.1`` | ``GCCcore/8.2.0`` -``1.16.1`` | ``GCCcore/8.3.0`` -``1.16.1`` | ``GCCcore/9.2.0`` -``1.16.1`` | ``GCCcore/9.3.0`` ``1.16.2`` | ``GCCcore/10.2.0`` ``1.16.3`` | ``GCCcore/10.3.0`` ``1.16.4`` | ``GCCcore/11.2.0`` @@ -60,6 +20,7 @@ version | toolchain ``1.16.5`` | ``GCCcore/13.2.0`` ``1.16.5`` | ``GCCcore/13.3.0`` ``1.16.5`` | ``system`` +``1.17`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/Autotools.md b/docs/version-specific/supported-software/a/Autotools.md index 19e8b3e50a..2f6216d433 100644 --- a/docs/version-specific/supported-software/a/Autotools.md +++ b/docs/version-specific/supported-software/a/Autotools.md @@ -4,47 +4,12 @@ search: --- # Autotools -This bundle collect the standard GNU build tools: Autoconf, Automake and libtool +This bundle collect the standard GNU build tools: Autoconf, Automake and libtool -*homepage*: +*homepage*: version | toolchain --------|---------- -``20150119`` | ``GCC/4.9.2`` -``20150215`` | ``GCC/4.8.4`` -``20150215`` | ``GCC/4.9.2`` -``20150215`` | ``GCC/4.9.3-2.25`` -``20150215`` | ``GCC/4.9.3`` -``20150215`` | ``GCC/5.2.0`` -``20150215`` | ``GCC/5.4.0-2.26`` -``20150215`` | ``GCCcore/4.9.2`` -``20150215`` | ``GCCcore/4.9.3`` -``20150215`` | ``GCCcore/5.3.0`` -``20150215`` | ``GCCcore/5.4.0`` -``20150215`` | ``GCCcore/6.1.0`` -``20150215`` | ``GCCcore/6.2.0`` -``20150215`` | ``GCCcore/6.3.0`` -``20150215`` | ``GNU/4.9.2-2.25`` -``20150215`` | ``GNU/4.9.3-2.25`` -``20150215`` | ``GNU/5.1.0-2.25`` -``20150215`` | ``foss/2016.04`` -``20150215`` | ``foss/2016a`` -``20150215`` | ``foss/2016b`` -``20150215`` | ``gimkl/2.11.5`` -``20150215`` | ``gimkl/2017a`` -``20150215`` | ``intel/2016.02-GCC-4.9`` -``20150215`` | ``intel/2016a`` -``20150215`` | ``intel/2016b`` -``20150215`` | ``iomkl/2016.07`` -``20150215`` | ``iomkl/2016.09-GCC-4.9.3-2.25`` -``20150215`` | ``system`` -``20170619`` | ``GCCcore/6.4.0`` -``20170619`` | ``GCCcore/7.2.0`` -``20180311`` | ``GCCcore/7.3.0`` -``20180311`` | ``GCCcore/8.2.0`` -``20180311`` | ``GCCcore/8.3.0`` -``20180311`` | ``GCCcore/9.2.0`` -``20180311`` | ``GCCcore/9.3.0`` ``20200321`` | ``GCCcore/10.2.0`` ``20210128`` | ``GCCcore/10.3.0`` ``20210726`` | ``GCCcore/11.2.0`` @@ -55,6 +20,7 @@ version | toolchain ``20220317`` | ``GCCcore/13.2.0`` ``20220317`` | ``system`` ``20231222`` | ``GCCcore/13.3.0`` +``20240712`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/Avogadro2.md b/docs/version-specific/supported-software/a/Avogadro2.md index 79c9d754e8..767c9d1408 100644 --- a/docs/version-specific/supported-software/a/Avogadro2.md +++ b/docs/version-specific/supported-software/a/Avogadro2.md @@ -4,7 +4,7 @@ search: --- # Avogadro2 -Avogadro is an advanced molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. +Avogadro is an advanced molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. *homepage*: diff --git a/docs/version-specific/supported-software/a/Ax.md b/docs/version-specific/supported-software/a/Ax.md index e86801fd73..4dbcf72aec 100644 --- a/docs/version-specific/supported-software/a/Ax.md +++ b/docs/version-specific/supported-software/a/Ax.md @@ -4,7 +4,7 @@ search: --- # Ax -Ax is an accessible, general-purpose platform for understanding, managing, deploying, and automating adaptive experiments. Adaptive experimentation is the machine-learning guided process of iteratively exploring a (possibly infinite) parameter space in order to identify optimal configurations in a resource-efficient manner. Ax currently supports Bayesian optimization and bandit optimization as exploration strategies. Bayesian optimization in Ax is powered by BoTorch, a modern library for Bayesian optimization research built on PyTorch. +Ax is an accessible, general-purpose platform for understanding, managing, deploying, and automating adaptive experiments. Adaptive experimentation is the machine-learning guided process of iteratively exploring a (possibly infinite) parameter space in order to identify optimal configurations in a resource-efficient manner. Ax currently supports Bayesian optimization and bandit optimization as exploration strategies. Bayesian optimization in Ax is powered by BoTorch, a modern library for Bayesian optimization research built on PyTorch. *homepage*: diff --git a/docs/version-specific/supported-software/a/aNCI.md b/docs/version-specific/supported-software/a/aNCI.md deleted file mode 100644 index 477be1780e..0000000000 --- a/docs/version-specific/supported-software/a/aNCI.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# aNCI - -Non-covalent interaction (NCI) for MD trajectories - -*homepage*: - -version | toolchain ---------|---------- -``2.0`` | ``iccifort/2019.5.281`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/absl-py.md b/docs/version-specific/supported-software/a/absl-py.md index c23d6161f6..923c0cebc4 100644 --- a/docs/version-specific/supported-software/a/absl-py.md +++ b/docs/version-specific/supported-software/a/absl-py.md @@ -11,6 +11,7 @@ absl-py is a collection of Python library code for building Python applications. version | toolchain --------|---------- ``2.1.0`` | ``GCCcore/12.3.0`` +``2.1.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/accelerate.md b/docs/version-specific/supported-software/a/accelerate.md index a1f6c13bed..d34e475106 100644 --- a/docs/version-specific/supported-software/a/accelerate.md +++ b/docs/version-specific/supported-software/a/accelerate.md @@ -4,13 +4,14 @@ search: --- # accelerate -A simple way to launch, train, and use PyTorch models on almost any device and distributed configuration, automatic mixed precision (including fp8), and easy-to-configure FSDP and DeepSpeed support. +A simple way to launch, train, and use PyTorch models on almost any device and distributed configuration, automatic mixed precision (including fp8), and easy-to-configure FSDP and DeepSpeed support. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- ``0.33.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``1.0.1`` | | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ack.md b/docs/version-specific/supported-software/a/ack.md index e8c172e6d6..d783bf59c5 100644 --- a/docs/version-specific/supported-software/a/ack.md +++ b/docs/version-specific/supported-software/a/ack.md @@ -6,11 +6,10 @@ search: ack is a tool like grep, optimized for programmers -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.14`` | ``system`` ``3.4.0`` | ``GCCcore/10.2.0`` ``3.5.0`` | ``GCCcore/10.3.0`` diff --git a/docs/version-specific/supported-software/a/ada.md b/docs/version-specific/supported-software/a/ada.md deleted file mode 100644 index 33efb77de5..0000000000 --- a/docs/version-specific/supported-software/a/ada.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ada - -Performs discrete, real, and gentle boost under both exponential and logistic loss on a given data set. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0-5`` | ``-R-3.4.0`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/adjustText.md b/docs/version-specific/supported-software/a/adjustText.md index fde59f5a98..66d866ff1d 100644 --- a/docs/version-specific/supported-software/a/adjustText.md +++ b/docs/version-specific/supported-software/a/adjustText.md @@ -8,14 +8,12 @@ A small library for automatically adjustment of text position in matplotlib plot *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.7.3`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.7.3`` | | ``foss/2021b`` -``0.7.3`` | | ``foss/2022b`` -``0.7.3`` | | ``foss/2023a`` -``0.7.3`` | ``-Python-3.7.2`` | ``intel/2019a`` -``1.1.1`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``0.7.3`` | ``foss/2021b`` +``0.7.3`` | ``foss/2022b`` +``0.7.3`` | ``foss/2023a`` +``1.1.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/aiohttp.md b/docs/version-specific/supported-software/a/aiohttp.md index a28507cd99..365458fde3 100644 --- a/docs/version-specific/supported-software/a/aiohttp.md +++ b/docs/version-specific/supported-software/a/aiohttp.md @@ -4,19 +4,19 @@ search: --- # aiohttp -" Async http client/server framework +Asynchronous HTTP client/server framework for asyncio and Python. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.5.4`` | ``-Python-3.6.6`` | ``foss/2018b`` -``3.8.1`` | | ``GCCcore/10.3.0`` -``3.8.1`` | | ``GCCcore/11.2.0`` -``3.8.3`` | | ``GCCcore/11.3.0`` -``3.8.5`` | | ``GCCcore/12.2.0`` -``3.8.5`` | | ``GCCcore/12.3.0`` -``3.9.5`` | | ``GCCcore/13.2.0`` +version | toolchain +--------|---------- +``3.10.10`` | ``GCCcore/13.3.0`` +``3.8.1`` | ``GCCcore/10.3.0`` +``3.8.1`` | ``GCCcore/11.2.0`` +``3.8.3`` | ``GCCcore/11.3.0`` +``3.8.5`` | ``GCCcore/12.2.0`` +``3.8.5`` | ``GCCcore/12.3.0`` +``3.9.5`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/alleleCount.md b/docs/version-specific/supported-software/a/alleleCount.md index 763aaf5a0b..392cc02846 100644 --- a/docs/version-specific/supported-software/a/alleleCount.md +++ b/docs/version-specific/supported-software/a/alleleCount.md @@ -4,13 +4,12 @@ search: --- # alleleCount -The alleleCount package primarily exists to prevent code duplication between some other projects, specifically AscatNGS and Battenberg. As of v4 the perl code wraps the C implementation of allele counting code for BAM/CRAM processing. +The alleleCount package primarily exists to prevent code duplication between some other projects, specifically AscatNGS and Battenberg. As of v4 the perl code wraps the C implementation of allele counting code for BAM/CRAM processing. *homepage*: version | toolchain --------|---------- -``4.0.0`` | ``GCCcore/6.4.0`` ``4.2.1`` | ``GCC/11.3.0`` ``4.3.0`` | ``GCC/12.2.0`` diff --git a/docs/version-specific/supported-software/a/almosthere.md b/docs/version-specific/supported-software/a/almosthere.md index 3b83e5f735..e5b3492ba0 100644 --- a/docs/version-specific/supported-software/a/almosthere.md +++ b/docs/version-specific/supported-software/a/almosthere.md @@ -4,14 +4,12 @@ search: --- # almosthere -Progress indicator C library. ATHR is a simple yet powerful progress indicator library that works on Windows, Linux, and macOS. It is non-blocking as the progress update is done via a dedicated, lightweight thread, as to not impair the performance of the calling program. +Progress indicator C library. ATHR is a simple yet powerful progress indicator library that works on Windows, Linux, and macOS. It is non-blocking as the progress update is done via a dedicated, lightweight thread, as to not impair the performance of the calling program. *homepage*: version | toolchain --------|---------- -``1.0.1`` | ``GCCcore/7.3.0`` -``1.0.10`` | ``GCCcore/9.3.0`` ``2.0.2`` | ``GCCcore/10.2.0`` diff --git a/docs/version-specific/supported-software/a/alsa-lib.md b/docs/version-specific/supported-software/a/alsa-lib.md index 7c9fd95bb3..767f61436f 100644 --- a/docs/version-specific/supported-software/a/alsa-lib.md +++ b/docs/version-specific/supported-software/a/alsa-lib.md @@ -12,7 +12,6 @@ version | toolchain --------|---------- ``1.2.11`` | ``GCCcore/13.2.0`` ``1.2.11`` | ``GCCcore/13.3.0`` -``1.2.4`` | ``GCCcore/9.3.0`` ``1.2.8`` | ``GCCcore/10.2.0`` ``1.2.8`` | ``GCCcore/11.2.0`` ``1.2.8`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/a/amask.md b/docs/version-specific/supported-software/a/amask.md deleted file mode 100644 index 505829d541..0000000000 --- a/docs/version-specific/supported-software/a/amask.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# amask - -amask is a set of tools to to determine the affinity of MPI processes and OpenMP threads in a parallel environment. - -*homepage*: - -version | toolchain ---------|---------- -``20171106`` | ``foss/2018a`` -``20190404`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/amplimap.md b/docs/version-specific/supported-software/a/amplimap.md deleted file mode 100644 index 58e04ef9ca..0000000000 --- a/docs/version-specific/supported-software/a/amplimap.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# amplimap - -amplimap is a command-line tool to automate the processing and analysis of data from targeted next-generation sequencing (NGS) experiments with PCR-based amplicons or capture-based enrichment systems. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.4.16`` | ``-Python-3.6.6`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/andi.md b/docs/version-specific/supported-software/a/andi.md deleted file mode 100644 index bdde585fbf..0000000000 --- a/docs/version-specific/supported-software/a/andi.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# andi - -This is the andi program for estimating the evolutionary distance between closely related genomes. These distances can be used to rapidly infer phylogenies for big sets of genomes. Because andi does not compute full alignments, it is so efficient that it scales even up to thousands of bacterial genomes. - -*homepage*: - -version | toolchain ---------|---------- -``0.13`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/angsd.md b/docs/version-specific/supported-software/a/angsd.md index 312c4e188f..6520a5f71d 100644 --- a/docs/version-specific/supported-software/a/angsd.md +++ b/docs/version-specific/supported-software/a/angsd.md @@ -10,11 +10,6 @@ Program for analysing NGS data. version | toolchain --------|---------- -``0.910`` | ``foss/2016a`` -``0.921`` | ``foss/2018a`` -``0.925`` | ``foss/2018b`` -``0.933`` | ``GCC/8.3.0`` -``0.933`` | ``iccifort/2019.5.281`` ``0.935`` | ``GCC/10.2.0`` ``0.940`` | ``GCC/11.2.0`` ``0.940`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/a/anndata.md b/docs/version-specific/supported-software/a/anndata.md index 2c65371021..5534a59224 100644 --- a/docs/version-specific/supported-software/a/anndata.md +++ b/docs/version-specific/supported-software/a/anndata.md @@ -11,6 +11,7 @@ anndata is a Python package for handling annotated data matrices in memory and o version | toolchain --------|---------- ``0.10.5.post1`` | ``foss/2023a`` +``0.11.1`` | ``foss/2023b`` ``0.8.0`` | ``foss/2022a`` ``0.9.2`` | ``foss/2021a`` ``0.9.2`` | ``foss/2021b`` diff --git a/docs/version-specific/supported-software/a/annovar.md b/docs/version-specific/supported-software/a/annovar.md index 130c7cba86..08ef901ede 100644 --- a/docs/version-specific/supported-software/a/annovar.md +++ b/docs/version-specific/supported-software/a/annovar.md @@ -4,15 +4,14 @@ search: --- # annovar -ANNOVAR is an efficient software tool to utilize update-to-date information to functionally annotate genetic variants detected from diverse genomes (including human genome hg18, hg19, hg38, as well as mouse, worm, fly, yeast and many others). +ANNOVAR is an efficient software tool to utilize update-to-date information to functionally annotate genetic variants detected from diverse genomes (including human genome hg18, hg19, hg38, as well as mouse, worm, fly, yeast and many others). *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2016Feb01`` | ``-Perl-5.22.1`` | ``foss/2016a`` -``20191024`` | ``-Perl-5.28.1`` | ``GCCcore/8.2.0`` ``20200607`` | ``-Perl-5.34.0`` | ``GCCcore/11.2.0`` +``20200607`` | | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ant.md b/docs/version-specific/supported-software/a/ant.md index a2a74b5040..52dcedca3b 100644 --- a/docs/version-specific/supported-software/a/ant.md +++ b/docs/version-specific/supported-software/a/ant.md @@ -6,40 +6,18 @@ search: Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.10.0`` | ``-Java-1.8.0_112`` | ``system`` -``1.10.1`` | ``-Java-1.8.0_121`` | ``system`` -``1.10.1`` | ``-Java-1.8.0_144`` | ``system`` -``1.10.1`` | ``-Java-1.8.0_152`` | ``system`` -``1.10.1`` | ``-Java-1.8.0_162`` | ``system`` -``1.10.1`` | ``-Java-1.8`` | ``system`` ``1.10.11`` | ``-Java-11`` | ``system`` ``1.10.11`` | ``-Java-13`` | ``system`` ``1.10.12`` | ``-Java-11`` | ``system`` ``1.10.12`` | ``-Java-17`` | ``system`` ``1.10.14`` | ``-Java-11`` | ``system`` ``1.10.14`` | ``-Java-21`` | ``system`` -``1.10.5`` | ``-Java-1.8`` | ``system`` -``1.10.6`` | ``-Java-1.8`` | ``system`` -``1.10.7`` | ``-Java-11`` | ``system`` ``1.10.8`` | ``-Java-11`` | ``system`` ``1.10.9`` | ``-Java-11`` | ``system`` -``1.8.4`` | ``-Java-1.7.0_10`` | ``system`` -``1.8.4`` | ``-Java-1.7.0_21`` | ``system`` -``1.9.0`` | ``-Java-1.7.0_15`` | ``system`` -``1.9.0`` | ``-Java-1.7.0_21`` | ``system`` -``1.9.3`` | ``-Java-1.7.0_60`` | ``system`` -``1.9.3`` | ``-Java-1.7.0_79`` | ``system`` -``1.9.6`` | ``-Java-1.7.0_75`` | ``system`` -``1.9.6`` | ``-Java-1.7.0_79`` | ``system`` -``1.9.6`` | ``-Java-1.7.0_80`` | ``system`` -``1.9.6`` | ``-Java-1.8.0_66`` | ``system`` -``1.9.6`` | ``-Java-1.8.0_72`` | ``system`` -``1.9.6`` | ``-Java-1.8.0_77`` | ``system`` -``1.9.7`` | ``-Java-1.8.0_92`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/antiSMASH.md b/docs/version-specific/supported-software/a/antiSMASH.md index 0e142dc3ce..7961da6af4 100644 --- a/docs/version-specific/supported-software/a/antiSMASH.md +++ b/docs/version-specific/supported-software/a/antiSMASH.md @@ -8,11 +8,10 @@ antiSMASH allows the rapid genome-wide identification, annotation and analysis o *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``5.1.2`` | ``-Python-3.7.4`` | ``foss/2019b`` -``5.2.0`` | | ``foss/2020b`` -``6.0.1`` | | ``foss/2020b`` +version | toolchain +--------|---------- +``5.2.0`` | ``foss/2020b`` +``6.0.1`` | ``foss/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/anvio.md b/docs/version-specific/supported-software/a/anvio.md index 1d946ce0a7..d8e6fc1984 100644 --- a/docs/version-specific/supported-software/a/anvio.md +++ b/docs/version-specific/supported-software/a/anvio.md @@ -8,10 +8,9 @@ An analysis and visualization platform for 'omics data. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``6.1`` | ``-Python-3.7.4`` | ``intel/2019b`` -``8`` | | ``foss/2022b`` +version | toolchain +--------|---------- +``8`` | ``foss/2022b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/any2fasta.md b/docs/version-specific/supported-software/a/any2fasta.md index 259927646b..abe210524b 100644 --- a/docs/version-specific/supported-software/a/any2fasta.md +++ b/docs/version-specific/supported-software/a/any2fasta.md @@ -8,14 +8,13 @@ Convert various sequence formats to FASTA *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.4.2`` | | ``GCCcore/10.2.0`` -``0.4.2`` | | ``GCCcore/10.3.0`` -``0.4.2`` | | ``GCCcore/11.2.0`` -``0.4.2`` | ``-Perl-5.28.1`` | ``GCCcore/8.2.0`` -``0.4.2`` | | ``GCCcore/8.3.0`` -``0.4.2`` | | ``GCCcore/9.3.0`` +version | toolchain +--------|---------- +``0.4.2`` | ``GCCcore/10.2.0`` +``0.4.2`` | ``GCCcore/10.3.0`` +``0.4.2`` | ``GCCcore/11.2.0`` +``0.4.2`` | ``GCCcore/12.3.0`` +``0.4.2`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/apex.md b/docs/version-specific/supported-software/a/apex.md index 164b280ed3..a5ee9deb75 100644 --- a/docs/version-specific/supported-software/a/apex.md +++ b/docs/version-specific/supported-software/a/apex.md @@ -8,10 +8,9 @@ A PyTorch Extension: Tools for easy mixed precision and distributed training in *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``20200325`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``20210420`` | | ``fosscuda/2020b`` +version | toolchain +--------|---------- +``20210420`` | ``fosscuda/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/arcasHLA.md b/docs/version-specific/supported-software/a/arcasHLA.md deleted file mode 100644 index 2d7716eb3c..0000000000 --- a/docs/version-specific/supported-software/a/arcasHLA.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# arcasHLA - -arcasHLA performs high resolution genotyping for HLA class I and class II genes from RNA sequencing, supporting both paired and single-end samples. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.2.0`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/archspec.md b/docs/version-specific/supported-software/a/archspec.md index b039b2213a..227f11648f 100644 --- a/docs/version-specific/supported-software/a/archspec.md +++ b/docs/version-specific/supported-software/a/archspec.md @@ -8,18 +8,17 @@ A library for detecting, labeling, and reasoning about microarchitectures *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1.0`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``0.1.0`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` -``0.1.2`` | | ``GCCcore/10.2.0`` -``0.1.2`` | | ``GCCcore/10.3.0`` -``0.1.3`` | | ``GCCcore/11.2.0`` -``0.1.4`` | | ``GCCcore/11.3.0`` -``0.2.0`` | | ``GCCcore/12.2.0`` -``0.2.1`` | | ``GCCcore/12.3.0`` -``0.2.2`` | | ``GCCcore/13.2.0`` -``0.2.4`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``0.1.2`` | ``GCCcore/10.2.0`` +``0.1.2`` | ``GCCcore/10.3.0`` +``0.1.3`` | ``GCCcore/11.2.0`` +``0.1.4`` | ``GCCcore/11.3.0`` +``0.2.0`` | ``GCCcore/12.2.0`` +``0.2.1`` | ``GCCcore/12.3.0`` +``0.2.2`` | ``GCCcore/13.2.0`` +``0.2.4`` | ``GCCcore/13.3.0`` +``0.2.5`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/argtable.md b/docs/version-specific/supported-software/a/argtable.md index e8679c69bc..8bb5a49630 100644 --- a/docs/version-specific/supported-software/a/argtable.md +++ b/docs/version-specific/supported-software/a/argtable.md @@ -13,12 +13,7 @@ version | toolchain ``2.13`` | ``GCCcore/10.2.0`` ``2.13`` | ``GCCcore/10.3.0`` ``2.13`` | ``GCCcore/11.2.0`` -``2.13`` | ``GCCcore/8.2.0`` -``2.13`` | ``GCCcore/8.3.0`` -``2.13`` | ``foss/2016b`` -``2.13`` | ``foss/2018b`` -``2.13`` | ``intel/2018a`` -``2.13`` | ``intel/2018b`` +``2.13`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/arpack-ng.md b/docs/version-specific/supported-software/a/arpack-ng.md index ea0d9302de..7344d91245 100644 --- a/docs/version-specific/supported-software/a/arpack-ng.md +++ b/docs/version-specific/supported-software/a/arpack-ng.md @@ -6,27 +6,10 @@ search: ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.3.0`` | ``foss/2016a`` -``3.3.0`` | ``intel/2016a`` -``3.4.0`` | ``foss/2016b`` -``3.4.0`` | ``foss/2017a`` -``3.4.0`` | ``intel/2016b`` -``3.4.0`` | ``intel/2017a`` -``3.5.0`` | ``foss/2017b`` -``3.5.0`` | ``foss/2018a`` -``3.5.0`` | ``foss/2018b`` -``3.5.0`` | ``intel/2017a`` -``3.5.0`` | ``intel/2017b`` -``3.6.2`` | ``intel/2018a`` -``3.7.0`` | ``foss/2019a`` -``3.7.0`` | ``foss/2019b`` -``3.7.0`` | ``foss/2020a`` -``3.7.0`` | ``intel/2019b`` -``3.7.0`` | ``intel/2020a`` ``3.8.0`` | ``foss/2020b`` ``3.8.0`` | ``foss/2021a`` ``3.8.0`` | ``foss/2021b`` @@ -35,6 +18,7 @@ version | toolchain ``3.9.0`` | ``foss/2023a`` ``3.9.0`` | ``foss/2023b`` ``3.9.1`` | ``foss/2023b`` +``3.9.1`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/arrow-R.md b/docs/version-specific/supported-software/a/arrow-R.md index daf5f83647..f98c4a49ff 100644 --- a/docs/version-specific/supported-software/a/arrow-R.md +++ b/docs/version-specific/supported-software/a/arrow-R.md @@ -10,9 +10,10 @@ R interface to the Apache Arrow C++ library version | versionsuffix | toolchain --------|---------------|---------- -``0.17.1`` | ``-R-4.0.0`` | ``foss/2020a`` ``11.0.0.3`` | ``-R-4.2.2`` | ``foss/2022b`` ``14.0.1`` | ``-R-4.3.2`` | ``foss/2023a`` +``16.1.0`` | ``-R-4.4.1`` | ``foss/2023b`` +``17.0.0.1`` | ``-R-4.4.2`` | ``foss/2024a`` ``6.0.0.2`` | ``-R-4.1.0`` | ``foss/2021a`` ``6.0.0.2`` | ``-R-4.1.2`` | ``foss/2021b`` ``6.0.0.2`` | ``-R-4.2.0`` | ``foss/2021b`` diff --git a/docs/version-specific/supported-software/a/artic-ncov2019.md b/docs/version-specific/supported-software/a/artic-ncov2019.md index 2b0a89f04f..0845d3c5e4 100644 --- a/docs/version-specific/supported-software/a/artic-ncov2019.md +++ b/docs/version-specific/supported-software/a/artic-ncov2019.md @@ -4,14 +4,13 @@ search: --- # artic-ncov2019 -Initial implementation of an ARTIC bioinformatics platform for nanopore sequencing of nCoV2019 novel coronavirus. +Initial implementation of an ARTIC bioinformatics platform for nanopore sequencing of nCoV2019 novel coronavirus. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2020.04.13`` | ``-Python-3.6.6`` | ``foss/2018b`` -``2021.06.24`` | | ``foss/2020b`` +version | toolchain +--------|---------- +``2021.06.24`` | ``foss/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/assimp.md b/docs/version-specific/supported-software/a/assimp.md index ec754c4f54..56abb5c31c 100644 --- a/docs/version-specific/supported-software/a/assimp.md +++ b/docs/version-specific/supported-software/a/assimp.md @@ -10,9 +10,9 @@ Open Asset Import Library (assimp) is a library to import and export various 3d version | toolchain --------|---------- -``5.0.1`` | ``GCCcore/8.3.0`` ``5.2.5`` | ``GCCcore/12.3.0`` ``5.3.1`` | ``GCCcore/13.2.0`` +``5.4.3`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ASHS.md b/docs/version-specific/supported-software/a/astropy-testing.md similarity index 81% rename from docs/version-specific/supported-software/a/ASHS.md rename to docs/version-specific/supported-software/a/astropy-testing.md index 23e30bc70e..b0910fb0b6 100644 --- a/docs/version-specific/supported-software/a/ASHS.md +++ b/docs/version-specific/supported-software/a/astropy-testing.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# ASHS +# astropy-testing -Automatic Segmentation of Hippocampal Subfields (ASHS) +This bundle contains all dependencies needed to test astropy using pytest. -*homepage*: +*homepage*: version | toolchain --------|---------- -``rev103_20140612`` | ``system`` +``7.0.0`` | ``gfbf/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/astropy.md b/docs/version-specific/supported-software/a/astropy.md index 8a8a108314..18148793fe 100644 --- a/docs/version-specific/supported-software/a/astropy.md +++ b/docs/version-specific/supported-software/a/astropy.md @@ -4,28 +4,23 @@ search: --- # astropy -The Astropy Project is a community effort to develop a single core package for Astronomy in Python and foster interoperability between Python astronomy packages. +The Astropy Project is a community effort to develop a single core package for Astronomy in Python and foster interoperability between Python astronomy packages. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0.12`` | ``-Python-2.7.15`` | ``foss/2018b`` -``2.0.12`` | ``-Python-2.7.15`` | ``intel/2018b`` -``2.0.14`` | | ``foss/2019a`` -``4.0.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``4.0.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``4.0.1`` | ``-Python-3.8.2`` | ``intel/2020a`` -``4.2.1`` | | ``foss/2020b`` -``4.2.1`` | | ``intel/2020b`` -``4.2.1`` | | ``intelcuda/2020b`` -``4.3.1`` | | ``foss/2021a`` -``4.3.1`` | | ``foss/2021b`` -``4.3.1`` | | ``intel/2021a`` -``5.0.4`` | | ``foss/2021a`` -``5.1.1`` | | ``foss/2022a`` -``5.1.1`` | | ``intel/2022a`` -``5.2.2`` | | ``gfbf/2022b`` +version | toolchain +--------|---------- +``4.2.1`` | ``foss/2020b`` +``4.2.1`` | ``intel/2020b`` +``4.2.1`` | ``intelcuda/2020b`` +``4.3.1`` | ``foss/2021a`` +``4.3.1`` | ``foss/2021b`` +``4.3.1`` | ``intel/2021a`` +``5.0.4`` | ``foss/2021a`` +``5.1.1`` | ``foss/2022a`` +``5.1.1`` | ``intel/2022a`` +``5.2.2`` | ``gfbf/2022b`` +``7.0.0`` | ``gfbf/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/at-spi2-atk.md b/docs/version-specific/supported-software/a/at-spi2-atk.md index c76f421898..8ccbd8536f 100644 --- a/docs/version-specific/supported-software/a/at-spi2-atk.md +++ b/docs/version-specific/supported-software/a/at-spi2-atk.md @@ -10,10 +10,6 @@ AT-SPI 2 toolkit bridge version | toolchain --------|---------- -``2.26.3`` | ``fosscuda/2018b`` -``2.32.0`` | ``GCCcore/8.2.0`` -``2.34.1`` | ``GCCcore/8.3.0`` -``2.34.2`` | ``GCCcore/9.3.0`` ``2.38.0`` | ``GCCcore/10.2.0`` ``2.38.0`` | ``GCCcore/10.3.0`` ``2.38.0`` | ``GCCcore/11.2.0`` @@ -21,6 +17,7 @@ version | toolchain ``2.38.0`` | ``GCCcore/12.2.0`` ``2.38.0`` | ``GCCcore/12.3.0`` ``2.38.0`` | ``GCCcore/13.2.0`` +``2.38.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/at-spi2-core.md b/docs/version-specific/supported-software/a/at-spi2-core.md index 404248f5b5..c41ba68099 100644 --- a/docs/version-specific/supported-software/a/at-spi2-core.md +++ b/docs/version-specific/supported-software/a/at-spi2-core.md @@ -10,10 +10,6 @@ Assistive Technology Service Provider Interface. version | toolchain --------|---------- -``2.26.3`` | ``fosscuda/2018b`` -``2.32.0`` | ``GCCcore/8.2.0`` -``2.34.0`` | ``GCCcore/8.3.0`` -``2.36.0`` | ``GCCcore/9.3.0`` ``2.38.0`` | ``GCCcore/10.2.0`` ``2.40.2`` | ``GCCcore/10.3.0`` ``2.40.3`` | ``GCCcore/11.2.0`` @@ -21,6 +17,7 @@ version | toolchain ``2.46.0`` | ``GCCcore/12.2.0`` ``2.49.91`` | ``GCCcore/12.3.0`` ``2.50.0`` | ``GCCcore/13.2.0`` +``2.54.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/atomate.md b/docs/version-specific/supported-software/a/atomate.md deleted file mode 100644 index 685aa12f45..0000000000 --- a/docs/version-specific/supported-software/a/atomate.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# atomate - -atomate has implementations of FireWorks workflows for Materials Science. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.4.4`` | ``-Python-2.7.13`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/atools.md b/docs/version-specific/supported-software/a/atools.md index cfb415c013..24ed10186c 100644 --- a/docs/version-specific/supported-software/a/atools.md +++ b/docs/version-specific/supported-software/a/atools.md @@ -10,8 +10,6 @@ Tools to make using job arrays a lot more convenient. version | versionsuffix | toolchain --------|---------------|---------- -``1.4.2`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.4.6`` | ``-Python-2.7.16`` | ``GCCcore/8.3.0`` ``1.4.8`` | ``-Python-2.7.18`` | ``GCCcore/10.3.0`` ``1.4.8`` | ``-Python-2.7.18`` | ``GCCcore/11.2.0`` ``1.5.1`` | | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/a/atropos.md b/docs/version-specific/supported-software/a/atropos.md index 13302daba3..8aaf1e82c0 100644 --- a/docs/version-specific/supported-software/a/atropos.md +++ b/docs/version-specific/supported-software/a/atropos.md @@ -8,10 +8,9 @@ Atropos is tool for specific, sensitive, and speedy trimming of NGS reads. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.21`` | ``-Python-3.6.6`` | ``intel/2018b`` -``1.1.32`` | | ``gompi/2023a`` +version | toolchain +--------|---------- +``1.1.32`` | ``gompi/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/attr.md b/docs/version-specific/supported-software/a/attr.md index d467087032..4d1edfefb0 100644 --- a/docs/version-specific/supported-software/a/attr.md +++ b/docs/version-specific/supported-software/a/attr.md @@ -10,8 +10,6 @@ Commands for Manipulating Filesystem Extended Attributes version | toolchain --------|---------- -``2.4.47`` | ``GCCcore/8.2.0`` -``2.4.48`` | ``GCCcore/9.3.0`` ``2.5.1`` | ``GCCcore/10.3.0`` ``2.5.1`` | ``GCCcore/11.2.0`` ``2.5.1`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/a/autopep8.md b/docs/version-specific/supported-software/a/autopep8.md index 13053f50f6..34141575ad 100644 --- a/docs/version-specific/supported-software/a/autopep8.md +++ b/docs/version-specific/supported-software/a/autopep8.md @@ -8,11 +8,10 @@ A tool that automatically formats Python code to conform to the PEP 8 style guid *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.4.4`` | ``-Python-3.6.4`` | ``intel/2018a`` -``2.0.4`` | | ``foss/2022a`` -``2.2.0`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``2.0.4`` | ``foss/2022a`` +``2.2.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/awscli.md b/docs/version-specific/supported-software/a/awscli.md index 35b73b7920..8b756f4fab 100644 --- a/docs/version-specific/supported-software/a/awscli.md +++ b/docs/version-specific/supported-software/a/awscli.md @@ -8,17 +8,11 @@ Universal Command Line Environment for AWS *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.11.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.11.56`` | ``-Python-2.7.12`` | ``foss/2016b`` -``1.16.290`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.17.7`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``1.18.89`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` -``2.0.55`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` -``2.11.21`` | | ``GCCcore/11.3.0`` -``2.15.2`` | | ``GCCcore/12.2.0`` -``2.17.54`` | | ``GCCcore/13.2.0`` +version | toolchain +--------|---------- +``2.11.21`` | ``GCCcore/11.3.0`` +``2.15.2`` | ``GCCcore/12.2.0`` +``2.17.54`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/axel.md b/docs/version-specific/supported-software/a/axel.md deleted file mode 100644 index 5568c07b9a..0000000000 --- a/docs/version-specific/supported-software/a/axel.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# axel - -Lightweight CLI download accelerator - -*homepage*: - -version | toolchain ---------|---------- -``2.17.9`` | ``GCCcore/8.3.0`` -``2.17.9`` | ``GCCcore/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/index.md b/docs/version-specific/supported-software/a/index.md index 06788a33e3..9dbb17ab98 100644 --- a/docs/version-specific/supported-software/a/index.md +++ b/docs/version-specific/supported-software/a/index.md @@ -19,14 +19,9 @@ search: * [accelerate](accelerate.md) * [ack](ack.md) * [ACTC](ACTC.md) - * [ada](ada.md) * [AdapterRemoval](AdapterRemoval.md) - * [ADDA](ADDA.md) * [ADF](ADF.md) - * [ADIOS](ADIOS.md) * [adjustText](adjustText.md) - * [ADMIXTURE](ADMIXTURE.md) - * [ADOL-C](ADOL-C.md) * [Advisor](Advisor.md) * [AEDT](AEDT.md) * [affinity](affinity.md) @@ -34,63 +29,40 @@ search: * [AFNI](AFNI.md) * [AGAT](AGAT.md) * [AGeNT](AGeNT.md) - * [AGFusion](AGFusion.md) * [AICSImageIO](AICSImageIO.md) * [AIMAll](AIMAll.md) * [aiohttp](aiohttp.md) - * [ALADIN](ALADIN.md) * [ALAMODE](ALAMODE.md) - * [Albacore](Albacore.md) * [Albumentations](Albumentations.md) * [alevin-fry](alevin-fry.md) - * [ALFA](ALFA.md) * [Alfred](Alfred.md) * [ALL](ALL.md) * [alleleCount](alleleCount.md) * [alleleIntegrator](alleleIntegrator.md) - * [Allinea](Allinea.md) - * [ALLPATHS-LG](ALLPATHS-LG.md) * [almosthere](almosthere.md) - * [Alpha](Alpha.md) * [AlphaFold](AlphaFold.md) * [AlphaPulldown](AlphaPulldown.md) - * [ALPS](ALPS.md) * [alsa-lib](alsa-lib.md) * [AMAPVox](AMAPVox.md) - * [Amara](Amara.md) - * [amask](amask.md) * [Amber](Amber.md) - * [AmberMini](AmberMini.md) * [AmberTools](AmberTools.md) - * [AMD-LibM](AMD-LibM.md) - * [AMD-RNG](AMD-RNG.md) - * [AMD-SecureRNG](AMD-SecureRNG.md) * [AMD-uProf](AMD-uProf.md) * [amdahl](amdahl.md) * [AMGX](AMGX.md) * [AMICA](AMICA.md) * [AMOS](AMOS.md) * [AMPHORA2](AMPHORA2.md) - * [AMPL-MP](AMPL-MP.md) - * [amplimap](amplimap.md) * [AMPtk](AMPtk.md) * [AMRFinderPlus](AMRFinderPlus.md) - * [AmrPlusPlus](AmrPlusPlus.md) * [AMS](AMS.md) - * [Anaconda2](Anaconda2.md) * [Anaconda3](Anaconda3.md) * [anadama2](anadama2.md) - * [aNCI](aNCI.md) - * [andi](andi.md) - * [ANGEL](ANGEL.md) * [angsd](angsd.md) * [ANIcalculator](ANIcalculator.md) * [anndata](anndata.md) - * [Annif](Annif.md) * [Annocript](Annocript.md) * [annovar](annovar.md) * [ANSYS](ANSYS.md) - * [ANSYS_CFD](ANSYS_CFD.md) * [ant](ant.md) * [ANTIC](ANTIC.md) * [antiSMASH](antiSMASH.md) @@ -99,19 +71,16 @@ search: * [anvio](anvio.md) * [any2fasta](any2fasta.md) * [AOCC](AOCC.md) + * [AOCL-BLAS](AOCL-BLAS.md) * [AOFlagger](AOFlagger.md) * [AOMP](AOMP.md) - * [APBS](APBS.md) * [apex](apex.md) * [APOST3D](APOST3D.md) * [APR](APR.md) * [APR-util](APR-util.md) - * [AptaSUITE](AptaSUITE.md) * [ARAGORN](ARAGORN.md) * [Arb](Arb.md) * [Arcade-Learning-Environment](Arcade-Learning-Environment.md) - * [arcasHLA](arcasHLA.md) - * [ARCH](ARCH.md) * [Archive-Zip](Archive-Zip.md) * [ArchR](ArchR.md) * [archspec](archspec.md) @@ -119,69 +88,51 @@ search: * [ARGoS](ARGoS.md) * [argtable](argtable.md) * [aria2](aria2.md) - * [Arlequin](Arlequin.md) * [Armadillo](Armadillo.md) * [arosics](arosics.md) - * [ARPACK++](ARPACK++.md) * [arpack-ng](arpack-ng.md) - * [ArrayFire](ArrayFire.md) * [Arriba](Arriba.md) * [Arrow](Arrow.md) * [arrow-R](arrow-R.md) - * [ART](ART.md) * [Artemis](Artemis.md) * [artic-ncov2019](artic-ncov2019.md) - * [ARTS](ARTS.md) * [ArviZ](ArviZ.md) - * [ARWEN](ARWEN.md) * [ASAP](ASAP.md) * [ASAP3](ASAP3.md) * [ASCAT](ASCAT.md) * [ASE](ASE.md) * [ASF-SearchAPI](ASF-SearchAPI.md) - * [ASHS](ASHS.md) * [Aspera-CLI](Aspera-CLI.md) - * [Aspera-Connect](Aspera-Connect.md) * [assembly-stats](assembly-stats.md) * [assimp](assimp.md) - * [Assimulo](Assimulo.md) - * [ASTRID](ASTRID.md) * [astro-tulips](astro-tulips.md) * [astropy](astropy.md) + * [astropy-testing](astropy-testing.md) * [at-spi2-atk](at-spi2-atk.md) * [at-spi2-core](at-spi2-core.md) - * [ATAT](ATAT.md) * [ATK](ATK.md) - * [ATLAS](ATLAS.md) - * [atomate](atomate.md) - * [AtomPAW](AtomPAW.md) + * [Atomsk](Atomsk.md) * [atools](atools.md) * [atropos](atropos.md) - * [ATSAS](ATSAS.md) * [attr](attr.md) - * [attrdict](attrdict.md) * [attrdict3](attrdict3.md) - * [augur](augur.md) * [AUGUSTUS](AUGUSTUS.md) * [Austin](Austin.md) * [AUTO-07p](AUTO-07p.md) + * [Auto-WEKA](Auto-WEKA.md) * [Autoconf](Autoconf.md) * [Autoconf-archive](Autoconf-archive.md) * [AutoDock](AutoDock.md) * [AutoDock-GPU](AutoDock-GPU.md) * [AutoDock-Vina](AutoDock-Vina.md) - * [AutoDockSuite](AutoDockSuite.md) * [AutoGeneS](AutoGeneS.md) - * [AutoGrid](AutoGrid.md) * [Automake](Automake.md) - * [AutoMap](AutoMap.md) * [autopep8](autopep8.md) * [Autotools](Autotools.md) * [Avogadro2](Avogadro2.md) * [avro-cpp](avro-cpp.md) * [awscli](awscli.md) * [Ax](Ax.md) - * [axel](axel.md) *(quick links: [(all)](../index.md) - [0](../0/index.md) - *a* - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BA3-SNPS-autotune.md b/docs/version-specific/supported-software/b/BA3-SNPS-autotune.md index 0db4c34a8d..e17fbd6ba9 100644 --- a/docs/version-specific/supported-software/b/BA3-SNPS-autotune.md +++ b/docs/version-specific/supported-software/b/BA3-SNPS-autotune.md @@ -4,7 +4,7 @@ search: --- # BA3-SNPS-autotune -This program will automatically tune mixing parameters for BA3-SNPs by implementing a binary search algorithm and conducting short exploratory runs of BA3-SNPS. +This program will automatically tune mixing parameters for BA3-SNPs by implementing a binary search algorithm and conducting short exploratory runs of BA3-SNPS. *homepage*: diff --git a/docs/version-specific/supported-software/b/BAGEL.md b/docs/version-specific/supported-software/b/BAGEL.md index 440b87e231..c5582521e8 100644 --- a/docs/version-specific/supported-software/b/BAGEL.md +++ b/docs/version-specific/supported-software/b/BAGEL.md @@ -10,7 +10,6 @@ BAGEL (Brilliantly Advanced General Electronic-structure Library) is a parallel version | toolchain --------|---------- -``1.1.1`` | ``intel/2016b`` ``1.2.2`` | ``foss/2021a`` ``1.2.2`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/b/BAMM.md b/docs/version-specific/supported-software/b/BAMM.md index 5dfa2b4686..3f0596e82f 100644 --- a/docs/version-specific/supported-software/b/BAMM.md +++ b/docs/version-specific/supported-software/b/BAMM.md @@ -4,7 +4,7 @@ search: --- # BAMM -BAMM is oriented entirely towards detecting and quantifying heterogeneity in evolutionary rates. It uses reversible jump Markov chain Monte Carlo to automatically explore a vast universe of candidate models of lineage diversification and trait evolution. +BAMM is oriented entirely towards detecting and quantifying heterogeneity in evolutionary rates. It uses reversible jump Markov chain Monte Carlo to automatically explore a vast universe of candidate models of lineage diversification and trait evolution. *homepage*: diff --git a/docs/version-specific/supported-software/b/BAMSurgeon.md b/docs/version-specific/supported-software/b/BAMSurgeon.md deleted file mode 100644 index 7fce28a426..0000000000 --- a/docs/version-specific/supported-software/b/BAMSurgeon.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# BAMSurgeon - -Tools for adding mutations to existing .bam files, used for testing mutation callers - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2`` | ``-Python-2.7.16`` | ``GCC/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/BAli-Phy.md b/docs/version-specific/supported-software/b/BAli-Phy.md index c74e64914c..89b30c6aa4 100644 --- a/docs/version-specific/supported-software/b/BAli-Phy.md +++ b/docs/version-specific/supported-software/b/BAli-Phy.md @@ -4,7 +4,7 @@ search: --- # BAli-Phy -BAli-Phy estimates multiple sequence alignments and evolutionary trees from DNA, amino acid, or codon sequences. +BAli-Phy estimates multiple sequence alignments and evolutionary trees from DNA, amino acid, or codon sequences. *homepage*: diff --git a/docs/version-specific/supported-software/b/BBMap.md b/docs/version-specific/supported-software/b/BBMap.md index a6600a03c5..986ea50924 100644 --- a/docs/version-specific/supported-software/b/BBMap.md +++ b/docs/version-specific/supported-software/b/BBMap.md @@ -8,23 +8,13 @@ BBMap short read aligner, and other bioinformatic tools. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``36.62`` | ``-Java-1.8.0_112`` | ``intel/2016b`` -``37.93`` | | ``foss/2018a`` -``37.93`` | | ``intel/2018a`` -``38.26`` | | ``foss/2018b`` -``38.50b`` | | ``GCC/8.2.0-2.31.1`` -``38.76`` | | ``GCC/8.2.0-2.31.1`` -``38.79`` | | ``GCC/8.3.0`` -``38.87`` | | ``GCC/8.2.0-2.31.1`` -``38.87`` | | ``iccifort/2020.1.217`` -``38.90`` | | ``GCC/10.2.0`` -``38.90`` | | ``GCC/9.3.0`` -``38.96`` | | ``GCC/10.3.0`` -``38.98`` | | ``GCC/11.2.0`` -``39.01`` | | ``GCC/11.3.0`` -``39.01`` | | ``GCC/12.2.0`` +version | toolchain +--------|---------- +``38.90`` | ``GCC/10.2.0`` +``38.96`` | ``GCC/10.3.0`` +``38.98`` | ``GCC/11.2.0`` +``39.01`` | ``GCC/11.3.0`` +``39.01`` | ``GCC/12.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BCEL.md b/docs/version-specific/supported-software/b/BCEL.md index d0c050d7b9..0e95428957 100644 --- a/docs/version-specific/supported-software/b/BCEL.md +++ b/docs/version-specific/supported-software/b/BCEL.md @@ -6,11 +6,10 @@ search: The Byte Code Engineering Library (Apache Commons BCEL™) is intended to give users a convenient way to analyze, create, and manipulate (binary) Java class files (those ending with .class). -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``5.2`` | ``-Java-1.8`` | ``system`` ``6.5.0`` | ``-Java-1.8`` | ``system`` diff --git a/docs/version-specific/supported-software/b/BCFtools.md b/docs/version-specific/supported-software/b/BCFtools.md index 7536f64dd5..0f8042765e 100644 --- a/docs/version-specific/supported-software/b/BCFtools.md +++ b/docs/version-specific/supported-software/b/BCFtools.md @@ -10,29 +10,15 @@ Samtools is a suite of programs for interacting with high-throughput sequencing version | toolchain --------|---------- -``1.10.2`` | ``GCC/8.3.0`` -``1.10.2`` | ``GCC/9.3.0`` -``1.10.2`` | ``iccifort/2019.5.281`` ``1.11`` | ``GCC/10.2.0`` ``1.12`` | ``GCC/10.2.0`` ``1.12`` | ``GCC/10.3.0`` -``1.12`` | ``GCC/9.3.0`` ``1.14`` | ``GCC/11.2.0`` ``1.15.1`` | ``GCC/11.3.0`` ``1.17`` | ``GCC/12.2.0`` ``1.18`` | ``GCC/12.3.0`` ``1.19`` | ``GCC/13.2.0`` -``1.3`` | ``foss/2016a`` -``1.3`` | ``intel/2016a`` -``1.3.1`` | ``foss/2016b`` -``1.6`` | ``foss/2016b`` -``1.6`` | ``foss/2017b`` -``1.6`` | ``intel/2017b`` -``1.8`` | ``GCC/6.4.0-2.28`` -``1.9`` | ``foss/2018a`` -``1.9`` | ``foss/2018b`` -``1.9`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``1.9`` | ``intel/2018b`` +``1.21`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BDBag.md b/docs/version-specific/supported-software/b/BDBag.md index 8bd23ddf03..984231ab32 100644 --- a/docs/version-specific/supported-software/b/BDBag.md +++ b/docs/version-specific/supported-software/b/BDBag.md @@ -8,11 +8,9 @@ The bdbag utilities are a collection of software programs for working with BagIt *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.4.1`` | ``-Python-2.7.14`` | ``intel/2018a`` -``1.4.1`` | ``-Python-3.6.4`` | ``intel/2018a`` -``1.6.3`` | | ``intel/2021b`` +version | toolchain +--------|---------- +``1.6.3`` | ``intel/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BEDOPS.md b/docs/version-specific/supported-software/b/BEDOPS.md index 011465c60f..2750adad51 100644 --- a/docs/version-specific/supported-software/b/BEDOPS.md +++ b/docs/version-specific/supported-software/b/BEDOPS.md @@ -4,21 +4,15 @@ search: --- # BEDOPS -BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale. +BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale. Tasks can be easily split by chromosome for distributing whole-genome analyses across a computational cluster. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.4.1`` | ``GCC/4.8.4`` -``2.4.2`` | ``GCC/4.8.2`` -``2.4.20`` | ``system`` -``2.4.26`` | ``system`` -``2.4.30`` | ``foss/2016b`` -``2.4.32`` | ``foss/2018a`` -``2.4.32`` | ``intel/2018a`` -``2.4.35`` | ``foss/2018b`` ``2.4.41`` | ``foss/2021b`` +``2.4.41`` | ``foss/2023a`` +``2.4.41`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BEDTools.md b/docs/version-specific/supported-software/b/BEDTools.md index b724911899..1f9fa100f6 100644 --- a/docs/version-specific/supported-software/b/BEDTools.md +++ b/docs/version-specific/supported-software/b/BEDTools.md @@ -4,28 +4,12 @@ search: --- # BEDTools -The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. +BEDTools: a powerful toolset for genome arithmetic. The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.25.0`` | ``foss/2016a`` -``2.26.0`` | ``GCCcore/6.4.0`` -``2.26.0`` | ``foss/2016a`` -``2.26.0`` | ``intel/2016b`` -``2.26.0`` | ``intel/2017a`` -``2.26.0`` | ``intel/2017b`` -``2.27.1`` | ``GCCcore/6.4.0`` -``2.27.1`` | ``foss/2016b`` -``2.27.1`` | ``foss/2018b`` -``2.27.1`` | ``intel/2017a`` -``2.27.1`` | ``intel/2018a`` -``2.28.0`` | ``GCC/8.2.0-2.31.1`` -``2.28.0`` | ``foss/2018b`` -``2.28.0`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``2.29.2`` | ``GCC/8.3.0`` -``2.29.2`` | ``GCC/9.3.0`` ``2.30.0`` | ``GCC/10.2.0`` ``2.30.0`` | ``GCC/10.3.0`` ``2.30.0`` | ``GCC/11.2.0`` @@ -33,6 +17,8 @@ version | toolchain ``2.30.0`` | ``GCC/12.2.0`` ``2.30.0`` | ``iccifort/2020.4.304`` ``2.31.0`` | ``GCC/12.3.0`` +``2.31.1`` | ``GCC/13.2.0`` +``2.31.1`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BEEF.md b/docs/version-specific/supported-software/b/BEEF.md index 45c41e1e9c..85b818e860 100644 --- a/docs/version-specific/supported-software/b/BEEF.md +++ b/docs/version-specific/supported-software/b/BEEF.md @@ -10,7 +10,6 @@ BEEF is a library-based implementation of the Bayesian Error Estimation Function version | toolchain --------|---------- -``0.1.1`` | ``iccifort/2019.5.281`` ``0.1.1`` | ``iccifort/2020.4.304`` diff --git a/docs/version-specific/supported-software/b/BFAST.md b/docs/version-specific/supported-software/b/BFAST.md deleted file mode 100644 index 95ca2cb959..0000000000 --- a/docs/version-specific/supported-software/b/BFAST.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# BFAST - -BFAST facilitates the fast and accurate mapping of short reads to reference sequences. Some advantages of BFAST include: 1) Speed: enables billions of short reads to be mapped quickly. 2) Accuracy: A priori probabilities for mapping reads with defined set of variants. 3) An easy way to measurably tune accuracy at the expense of speed. - -*homepage*: - -version | toolchain ---------|---------- -``0.7.0a`` | ``foss/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/BFC.md b/docs/version-specific/supported-software/b/BFC.md deleted file mode 100644 index d61766084c..0000000000 --- a/docs/version-specific/supported-software/b/BFC.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# BFC - -BFC is a standalone high-performance tool for correcting sequencing errors from Illumina sequencing data. It is specifically designed for high-coverage whole-genome human data, though also performs well for small genomes. - -*homepage*: - -version | toolchain ---------|---------- -``1`` | ``foss/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/BGEN-enkre.md b/docs/version-specific/supported-software/b/BGEN-enkre.md index 0043284793..689c0a60c7 100644 --- a/docs/version-specific/supported-software/b/BGEN-enkre.md +++ b/docs/version-specific/supported-software/b/BGEN-enkre.md @@ -4,13 +4,14 @@ search: --- # BGEN-enkre -This repository contains a reference implementation of the BGEN format, written in C++. The library can be used as the basis for BGEN support in other software, or as a reference for developers writing their own implementations of the BGEN format. Please cite: Band, G. and Marchini, J., "BGEN: a binary file format for imputed genotype and haplotype data", bioArxiv 308296; doi: https://doi.org/10.1101/308296 +This repository contains a reference implementation of the BGEN format, written in C++. The library can be used as the basis for BGEN support in other software, or as a reference for developers writing their own implementations of the BGEN format. Please cite: Band, G. and Marchini, J., "BGEN: a binary file format for imputed genotype and haplotype data", bioArxiv 308296; doi: https://doi.org/10.1101/308296 *homepage*: version | toolchain --------|---------- ``1.1.7`` | ``GCC/11.2.0`` +``1.1.7`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BLACS.md b/docs/version-specific/supported-software/b/BLACS.md deleted file mode 100644 index cff32dba79..0000000000 --- a/docs/version-specific/supported-software/b/BLACS.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# BLACS - -The BLACS (Basic Linear Algebra Communication Subprograms) project is an ongoing investigation whose purpose is to create a linear algebra oriented message passing interface that may be implemented efficiently and uniformly across a large range of distributed memory platforms. - -*homepage*: - -version | toolchain ---------|---------- -``1.1`` | ``gmvapich2/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/BLASR.md b/docs/version-specific/supported-software/b/BLASR.md deleted file mode 100644 index b557d0192e..0000000000 --- a/docs/version-specific/supported-software/b/BLASR.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# BLASR - -BLASR (Basic Local Alignment with Successive Refinement) rapidly maps reads to genomes by finding the highest scoring local alignment or set of local alignments between the read and the genome. Optimized for PacBio's extraordinarily long reads and taking advantage of rich quality values, BLASR maps reads rapidly with high accuracy. - -*homepage*: - -version | toolchain ---------|---------- -``2.2`` | ``intel/2016b`` -``20170330`` | ``intel/2017a`` -``5.3.3`` | ``gompi/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/BLAST+.md b/docs/version-specific/supported-software/b/BLAST+.md index 3ac849d8fc..624e4c0b8c 100644 --- a/docs/version-specific/supported-software/b/BLAST+.md +++ b/docs/version-specific/supported-software/b/BLAST+.md @@ -8,35 +8,17 @@ Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing prim *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.10.1`` | | ``gompi/2020a`` -``2.10.1`` | | ``iimpi/2020a`` -``2.11.0`` | | ``gompi/2019b`` -``2.11.0`` | | ``gompi/2020a`` -``2.11.0`` | | ``gompi/2020b`` -``2.11.0`` | | ``gompi/2021a`` -``2.12.0`` | | ``gompi/2021b`` -``2.13.0`` | | ``gompi/2022a`` -``2.14.0`` | | ``gompi/2022b`` -``2.14.1`` | | ``gompi/2023a`` -``2.2.31`` | | ``system`` -``2.3.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``2.6.0`` | ``-Python-2.7.12`` | ``foss/2016b`` -``2.6.0`` | ``-Python-2.7.13`` | ``foss/2017a`` -``2.6.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``2.6.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.7.1`` | | ``foss/2018a`` -``2.7.1`` | | ``foss/2018b`` -``2.7.1`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.7.1`` | | ``intel/2018a`` -``2.7.1`` | | ``intel/2018b`` -``2.8.1`` | | ``foss/2018b`` -``2.9.0`` | | ``gompi/2019a`` -``2.9.0`` | | ``gompi/2019b`` -``2.9.0`` | | ``gompi/2021b`` -``2.9.0`` | | ``iimpi/2019a`` -``2.9.0`` | | ``iimpi/2019b`` +version | toolchain +--------|---------- +``2.11.0`` | ``gompi/2020b`` +``2.11.0`` | ``gompi/2021a`` +``2.12.0`` | ``gompi/2021b`` +``2.13.0`` | ``gompi/2022a`` +``2.14.0`` | ``gompi/2022b`` +``2.14.1`` | ``gompi/2023a`` +``2.16.0`` | ``gompi/2023b`` +``2.16.0`` | ``gompi/2024a`` +``2.9.0`` | ``gompi/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BLAST.md b/docs/version-specific/supported-software/b/BLAST.md index 23d3c9c5a3..04ce4063c6 100644 --- a/docs/version-specific/supported-software/b/BLAST.md +++ b/docs/version-specific/supported-software/b/BLAST.md @@ -4,7 +4,7 @@ search: --- # BLAST -Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences. +Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences. *homepage*: @@ -14,7 +14,6 @@ version | versionsuffix | toolchain ``2.10.1`` | ``-Linux_x86_64`` | ``system`` ``2.11.0`` | ``-Linux_x86_64`` | ``system`` ``2.2.26`` | ``-Linux_x86_64`` | ``system`` -``2.8.1`` | ``-Linux_x86_64`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BLAT.md b/docs/version-specific/supported-software/b/BLAT.md index e813db51ca..e483824344 100644 --- a/docs/version-specific/supported-software/b/BLAT.md +++ b/docs/version-specific/supported-software/b/BLAT.md @@ -4,22 +4,16 @@ search: --- # BLAT -BLAT on DNA is designed to quickly find sequences of 95% and greater similarity of length 25 bases or more. +BLAT on DNA is designed to quickly find sequences of 95% and greater similarity of length 25 bases or more. -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.5`` | ``GCC/8.2.0-2.31.1`` -``3.5`` | ``GCC/8.3.0`` -``3.5`` | ``GCC/9.3.0`` -``3.5`` | ``foss/2016b`` -``3.5`` | ``foss/2018b`` -``3.5`` | ``intel/2016b`` -``3.5`` | ``intel/2017a`` ``3.7`` | ``GCC/10.3.0`` ``3.7`` | ``GCC/11.2.0`` ``3.7`` | ``GCC/11.3.0`` +``3.7`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BLIS.md b/docs/version-specific/supported-software/b/BLIS.md index 2e13ec5fbc..49381a6223 100644 --- a/docs/version-specific/supported-software/b/BLIS.md +++ b/docs/version-specific/supported-software/b/BLIS.md @@ -4,16 +4,13 @@ search: --- # BLIS -BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. +BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``0.3.2`` | | ``GCC/7.3.0-2.30`` -``0.6.0`` | | ``GCC/8.3.0-2.32`` ``0.8.0`` | | ``GCCcore/10.2.0`` -``0.8.0`` | | ``GCCcore/9.3.0`` ``0.8.1`` | | ``GCC/10.3.0`` ``0.8.1`` | | ``GCC/11.2.0`` ``0.8.1`` | | ``GCCcore/10.3.0`` @@ -24,8 +21,6 @@ version | versionsuffix | toolchain ``0.9.0`` | | ``intel-compilers/2022.1.0`` ``1.0`` | | ``GCC/13.2.0`` ``1.0`` | | ``GCC/13.3.0`` -``1.2`` | ``-amd`` | ``GCC/7.3.0-2.30`` -``2.2`` | ``-amd`` | ``GCCcore/9.3.0`` ``3.0`` | ``-amd`` | ``GCCcore/10.3.0`` ``3.0.1`` | ``-amd`` | ``GCC/11.2.0`` ``3.0.1`` | ``-amd`` | ``GCCcore/10.2.0`` diff --git a/docs/version-specific/supported-software/b/BOINC.md b/docs/version-specific/supported-software/b/BOINC.md deleted file mode 100644 index 1b6a3fb2e9..0000000000 --- a/docs/version-specific/supported-software/b/BOINC.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# BOINC - -BOINC is a program that lets you donate your idle computer time to science projects like SETI@home, Climateprediction.net, Rosetta@home, World Community Grid, and many others. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``7.2.42`` | ``-client`` | ``GCC/4.8.2`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/BRAKER.md b/docs/version-specific/supported-software/b/BRAKER.md index e53e319b04..ab71651aa7 100644 --- a/docs/version-specific/supported-software/b/BRAKER.md +++ b/docs/version-specific/supported-software/b/BRAKER.md @@ -8,12 +8,11 @@ BRAKER is a pipeline for fully automated prediction of protein coding genes with *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1.2`` | | ``intel/2019a`` -``2.1.5`` | ``-Python-3.7.4`` | ``intel/2019b`` -``2.1.6`` | | ``foss/2021b`` -``2.1.6`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``2.1.6`` | ``foss/2021b`` +``2.1.6`` | ``foss/2022a`` +``3.0.8`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BSMAPz.md b/docs/version-specific/supported-software/b/BSMAPz.md deleted file mode 100644 index f48414b510..0000000000 --- a/docs/version-specific/supported-software/b/BSMAPz.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# BSMAPz - -Updated and optimized fork of BSMAP. BSMAPz is a short reads mapping program for bisulfite sequencing in DNA methylation study. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.1`` | ``-Python-2.7.16`` | ``intel/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/BSseeker2.md b/docs/version-specific/supported-software/b/BSseeker2.md deleted file mode 100644 index fb6383ab16..0000000000 --- a/docs/version-specific/supported-software/b/BSseeker2.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# BSseeker2 - -BS-Seeker2 is a seamless and versatile pipeline for accurately and fast mapping the bisulfite-treated reads. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1.8`` | ``-Python-2.7.16`` | ``GCC/8.3.0`` -``2.1.8`` | ``-Python-2.7.16`` | ``iccifort/2019.5.281`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/BUFRLIB.md b/docs/version-specific/supported-software/b/BUFRLIB.md deleted file mode 100644 index 27da2cec28..0000000000 --- a/docs/version-specific/supported-software/b/BUFRLIB.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# BUFRLIB - -NCEP BUFRLIB software to encode or decode BUFR messages. It is not intended to be a primer on the BUFR code form itself. - -*homepage*: - -version | toolchain ---------|---------- -``11.3.0.2`` | ``iccifort/2020.1.217`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/BUSCO.md b/docs/version-specific/supported-software/b/BUSCO.md index 4fb1c8cb74..ec8c6b5472 100644 --- a/docs/version-specific/supported-software/b/BUSCO.md +++ b/docs/version-specific/supported-software/b/BUSCO.md @@ -6,21 +6,17 @@ search: BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.22`` | ``-Python-2.7.13`` | ``intel/2017a`` -``2.0.1`` | ``-Python-2.7.13`` | ``intel/2017a`` -``3.0.2`` | ``-Python-2.7.15`` | ``intel/2018b`` -``4.0.5`` | ``-Python-3.7.4`` | ``foss/2019b`` -``4.0.6`` | | ``foss/2020b`` -``5.0.0`` | | ``foss/2020b`` -``5.1.2`` | | ``foss/2020b`` -``5.4.2`` | | ``foss/2021a`` -``5.4.3`` | | ``foss/2021b`` -``5.4.5`` | | ``foss/2022a`` -``5.4.7`` | | ``foss/2022b`` +version | toolchain +--------|---------- +``4.0.6`` | ``foss/2020b`` +``5.0.0`` | ``foss/2020b`` +``5.1.2`` | ``foss/2020b`` +``5.4.2`` | ``foss/2021a`` +``5.4.3`` | ``foss/2021b`` +``5.4.5`` | ``foss/2022a`` +``5.4.7`` | ``foss/2022b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BUStools.md b/docs/version-specific/supported-software/b/BUStools.md index 6cf9716265..a9d189a73b 100644 --- a/docs/version-specific/supported-software/b/BUStools.md +++ b/docs/version-specific/supported-software/b/BUStools.md @@ -10,8 +10,6 @@ bustools is a program for manipulating BUS files for single cell RNA-Seq dataset version | toolchain --------|---------- -``0.40.0`` | ``GCCcore/9.3.0`` -``0.40.0`` | ``foss/2018b`` ``0.43.1`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/b/BWA.md b/docs/version-specific/supported-software/b/BWA.md index 2173e4863c..2622a3382a 100644 --- a/docs/version-specific/supported-software/b/BWA.md +++ b/docs/version-specific/supported-software/b/BWA.md @@ -4,43 +4,23 @@ search: --- # BWA -Burrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome. +Burrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome. *homepage*: version | toolchain --------|---------- -``0.7.12`` | ``foss/2016b`` -``0.7.13`` | ``foss/2016a`` -``0.7.13`` | ``intel/2016a`` -``0.7.15`` | ``GCCcore/5.4.0`` -``0.7.15`` | ``GCCcore/6.4.0`` -``0.7.15`` | ``foss/2016a`` -``0.7.15`` | ``foss/2016b`` -``0.7.15`` | ``intel/2016b`` -``0.7.15`` | ``intel/2017a`` -``0.7.16a`` | ``foss/2016b`` -``0.7.16a`` | ``intel/2017a`` ``0.7.17-20220923`` | ``GCCcore/12.3.0`` ``0.7.17`` | ``GCC/10.2.0`` ``0.7.17`` | ``GCC/10.3.0`` -``0.7.17`` | ``GCC/8.2.0-2.31.1`` -``0.7.17`` | ``GCC/8.3.0`` -``0.7.17`` | ``GCC/9.3.0`` ``0.7.17`` | ``GCCcore/11.2.0`` ``0.7.17`` | ``GCCcore/11.3.0`` ``0.7.17`` | ``GCCcore/12.2.0`` ``0.7.17`` | ``GCCcore/12.3.0`` -``0.7.17`` | ``foss/2017b`` -``0.7.17`` | ``foss/2018a`` -``0.7.17`` | ``foss/2018b`` -``0.7.17`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``0.7.17`` | ``iccifort/2019.5.281`` ``0.7.17`` | ``iccifort/2020.4.304`` -``0.7.17`` | ``intel/2017b`` -``0.7.17`` | ``intel/2018a`` -``0.7.17`` | ``intel/2018b`` ``0.7.18`` | ``GCCcore/12.3.0`` +``0.7.18`` | ``GCCcore/13.2.0`` +``0.7.18`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BWISE.md b/docs/version-specific/supported-software/b/BWISE.md deleted file mode 100644 index f12260faa7..0000000000 --- a/docs/version-specific/supported-software/b/BWISE.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# BWISE - -de Bruijn Workflow using Integral information of Short pair End reads - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20180820`` | ``-Python-3.6.4`` | ``foss/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/BXH_XCEDE_TOOLS.md b/docs/version-specific/supported-software/b/BXH_XCEDE_TOOLS.md deleted file mode 100644 index a7045eb275..0000000000 --- a/docs/version-specific/supported-software/b/BXH_XCEDE_TOOLS.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# BXH_XCEDE_TOOLS - -A collection of data processing and image analysis tools for data in BXH or XCEDE format. This includes data format encapsulation/conversion, event-related analysis, QA tools, and more. These tools form the basis of the fBIRN QA procedures and are also distributed as part of the fBIRN Data Upload Scripts. - -*homepage*: - -version | toolchain ---------|---------- -``1.11.1`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/Bader.md b/docs/version-specific/supported-software/b/Bader.md index 4a16fada1d..8b3c29adc3 100644 --- a/docs/version-specific/supported-software/b/Bader.md +++ b/docs/version-specific/supported-software/b/Bader.md @@ -4,14 +4,12 @@ search: --- # Bader -A fast algorithm for doing Bader's analysis on a charge density grid. +Bader Charge Analysis -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.02`` | ``intel/2018a`` -``1.03`` | ``intel/2018b`` ``1.04`` | ``GCC/11.2.0`` ``1.04`` | ``iccifort/2020.4.304`` diff --git a/docs/version-specific/supported-software/b/BamTools.md b/docs/version-specific/supported-software/b/BamTools.md index 798c822baf..9afe4e28f7 100644 --- a/docs/version-specific/supported-software/b/BamTools.md +++ b/docs/version-specific/supported-software/b/BamTools.md @@ -10,27 +10,15 @@ BamTools provides both a programmer's API and an end-user's toolkit for handling version | toolchain --------|---------- -``2.4.0`` | ``foss/2016b`` -``2.4.1`` | ``intel/2017a`` -``2.5.0`` | ``foss/2016b`` -``2.5.0`` | ``intel/2017b`` ``2.5.1`` | ``GCC/10.2.0`` -``2.5.1`` | ``GCC/8.2.0-2.31.1`` -``2.5.1`` | ``GCC/8.3.0`` -``2.5.1`` | ``GCC/9.3.0`` -``2.5.1`` | ``foss/2017b`` -``2.5.1`` | ``foss/2018a`` -``2.5.1`` | ``foss/2018b`` -``2.5.1`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``2.5.1`` | ``iccifort/2019.5.281`` ``2.5.1`` | ``iccifort/2020.4.304`` -``2.5.1`` | ``intel/2017b`` -``2.5.1`` | ``intel/2018b`` ``2.5.2`` | ``GCC/10.3.0`` ``2.5.2`` | ``GCC/11.2.0`` ``2.5.2`` | ``GCC/11.3.0`` ``2.5.2`` | ``GCC/12.2.0`` ``2.5.2`` | ``GCC/12.3.0`` +``2.5.2`` | ``GCC/13.2.0`` +``2.5.2`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BamUtil.md b/docs/version-specific/supported-software/b/BamUtil.md deleted file mode 100644 index b33844c48c..0000000000 --- a/docs/version-specific/supported-software/b/BamUtil.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# BamUtil - -BamUtil is a repository that contains several programs that perform operations on SAM/BAM files. All of these programs are built into a single executable, bam. - -*homepage*: - -version | toolchain ---------|---------- -``1.0.13`` | ``intel/2016b`` -``1.0.14`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/Bandage.md b/docs/version-specific/supported-software/b/Bandage.md index 6819975f06..0303af854e 100644 --- a/docs/version-specific/supported-software/b/Bandage.md +++ b/docs/version-specific/supported-software/b/Bandage.md @@ -11,7 +11,6 @@ Bandage is a program for visualising de novo assembly graphs version | versionsuffix | toolchain --------|---------------|---------- ``0.8.1`` | ``_Centos`` | ``system`` -``0.8.1`` | ``_Ubuntu`` | ``system`` ``0.9.0`` | | ``GCCcore/11.2.0`` ``0.9.0`` | | ``GCCcore/11.3.0`` ``0.9.0`` | | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/b/Bash.md b/docs/version-specific/supported-software/b/Bash.md deleted file mode 100644 index 054af2e58e..0000000000 --- a/docs/version-specific/supported-software/b/Bash.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Bash - -Bash is an sh-compatible command language interpreter that executes commands read from the standard input or from a file. Bash also incorporates useful features from the Korn and C shells (ksh and csh). - -*homepage*: - -version | toolchain ---------|---------- -``4.3`` | ``GCC/4.9.2`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/BatMeth2.md b/docs/version-specific/supported-software/b/BatMeth2.md deleted file mode 100644 index 3ed5d2e773..0000000000 --- a/docs/version-specific/supported-software/b/BatMeth2.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# BatMeth2 - -An Integrated Package for Bisulfite DNA Methylation Data Analysis with Indel-sensitive Mapping. - -*homepage*: - -version | toolchain ---------|---------- -``2.1`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/BayeScEnv.md b/docs/version-specific/supported-software/b/BayeScEnv.md deleted file mode 100644 index 969eb0121c..0000000000 --- a/docs/version-specific/supported-software/b/BayeScEnv.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# BayeScEnv - -BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation. - -*homepage*: - -version | toolchain ---------|---------- -``1.1`` | ``GCC/8.3.0`` -``1.1`` | ``foss/2016a`` -``1.1`` | ``iccifort/2019.5.281`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/BayeScan.md b/docs/version-specific/supported-software/b/BayeScan.md deleted file mode 100644 index f2f1ff27a5..0000000000 --- a/docs/version-specific/supported-software/b/BayeScan.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# BayeScan - -BayeScan aims at identifying candidate loci under natural selection from genetic data, using differences in allele frequencies between populations. - -*homepage*: - -version | toolchain ---------|---------- -``2.1`` | ``foss/2016a`` -``2.1`` | ``foss/2018a`` -``2.1`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/BayesAss.md b/docs/version-specific/supported-software/b/BayesAss.md deleted file mode 100644 index ff6df5aef1..0000000000 --- a/docs/version-specific/supported-software/b/BayesAss.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# BayesAss - -BayesAss: Bayesian Inference of Recent Migration Using Multilocus Genotypes - -*homepage*: - -version | toolchain ---------|---------- -``3.0.4`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/BayesPrism.md b/docs/version-specific/supported-software/b/BayesPrism.md index 17a5dc2393..2085744a89 100644 --- a/docs/version-specific/supported-software/b/BayesPrism.md +++ b/docs/version-specific/supported-software/b/BayesPrism.md @@ -4,7 +4,7 @@ search: --- # BayesPrism -Bayesian cell Proportion Reconstruction Inferred using Statistical Marginalization (BayesPrism): A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression +Bayesian cell Proportion Reconstruction Inferred using Statistical Marginalization (BayesPrism): A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression *homepage*: diff --git a/docs/version-specific/supported-software/b/BayesTraits.md b/docs/version-specific/supported-software/b/BayesTraits.md index 1fce2adc4a..0bbcec841f 100644 --- a/docs/version-specific/supported-software/b/BayesTraits.md +++ b/docs/version-specific/supported-software/b/BayesTraits.md @@ -4,14 +4,12 @@ search: --- # BayesTraits -BayesTraits is a computer package for performing analyses of trait evolution among groups of species for which a phylogeny or sample of phylogenies is available. This new package incoporates our earlier and separate programes Multistate, Discrete and Continuous. BayesTraits can be applied to the analysis of traits that adopt a finite number of discrete states, or to the analysis of continuously varying traits. Hypotheses can be tested about models of evolution, about ancestral states and about correlations among pairs of traits. +BayesTraits is a computer package for performing analyses of trait evolution among groups of species for which a phylogeny or sample of phylogenies is available. This new package incorporates our earlier and separate programes Multistate, Discrete and Continuous. BayesTraits can be applied to the analysis of traits that adopt a finite number of discrete states, or to the analysis of continuously varying traits. Hypotheses can be tested about models of evolution, about ancestral states and about correlations among pairs of traits. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.0-linux32`` | | ``system`` -``2.0`` | ``-Beta-Linux64`` | ``system`` ``3.0.2`` | ``-Linux`` | ``system`` ``4.1.2`` | ``-Linux`` | ``system`` diff --git a/docs/version-specific/supported-software/b/Baysor.md b/docs/version-specific/supported-software/b/Baysor.md new file mode 100644 index 0000000000..0a940db832 --- /dev/null +++ b/docs/version-specific/supported-software/b/Baysor.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Baysor + +Baysor is a tool for performing cell segmentation on imaging-based spatial transcriptomics data. It optimizes segmentation considering the likelihood of transcriptional composition, size and shape of the cell. The approach can take into account nuclear or cytoplasm staining, however, can also perform segmentation based on the detected molecules alone. + +*homepage*: + +version | toolchain +--------|---------- +``0.7.1`` | ``system`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/b/Bazel.md b/docs/version-specific/supported-software/b/Bazel.md index 188c8eafb0..5d4712a6b0 100644 --- a/docs/version-specific/supported-software/b/Bazel.md +++ b/docs/version-specific/supported-software/b/Bazel.md @@ -4,44 +4,22 @@ search: --- # Bazel -Bazel is a build tool that builds code quickly and reliably. It is used to build the majority of Google's software. +Bazel is a build tool that builds code quickly and reliably. It is used to build the majority of Google's software. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.0`` | | ``GCCcore/6.4.0`` -``0.11.0`` | | ``GCCcore/6.4.0`` -``0.11.1`` | | ``GCCcore/6.4.0`` -``0.12.0`` | | ``GCCcore/6.4.0`` -``0.16.0`` | | ``GCCcore/6.4.0`` -``0.16.0`` | | ``GCCcore/7.3.0`` -``0.18.0`` | | ``GCCcore/7.3.0`` -``0.20.0`` | | ``GCCcore/7.3.0`` -``0.20.0`` | | ``GCCcore/8.2.0`` -``0.25.2`` | | ``GCCcore/8.2.0`` -``0.26.1`` | | ``GCCcore/8.2.0`` -``0.26.1`` | | ``GCCcore/8.3.0`` -``0.29.1`` | | ``GCCcore/8.2.0`` -``0.29.1`` | | ``GCCcore/8.3.0`` -``0.29.1`` | ``-Java-1.8`` | ``GCCcore/9.3.0`` -``0.4.4`` | | ``system`` -``0.7.0`` | | ``GCCcore/6.4.0`` -``1.1.0`` | | ``GCCcore/8.3.0`` -``2.0.0`` | | ``GCCcore/10.2.0`` -``2.0.0`` | | ``GCCcore/8.3.0`` -``3.4.1`` | | ``GCCcore/8.3.0`` -``3.6.0`` | | ``GCCcore/9.3.0`` -``3.7.1`` | | ``GCCcore/8.3.0`` -``3.7.2`` | | ``GCCcore/10.2.0`` -``3.7.2`` | | ``GCCcore/10.3.0`` -``3.7.2`` | | ``GCCcore/11.2.0`` -``3.7.2`` | | ``GCCcore/8.3.0`` -``4.2.2`` | | ``GCCcore/11.2.0`` -``5.1.1`` | | ``GCCcore/11.3.0`` -``6.1.0`` | | ``GCCcore/12.3.0`` -``6.3.1`` | | ``GCCcore/12.2.0`` -``6.3.1`` | | ``GCCcore/12.3.0`` +version | toolchain +--------|---------- +``2.0.0`` | ``GCCcore/10.2.0`` +``3.7.2`` | ``GCCcore/10.2.0`` +``3.7.2`` | ``GCCcore/10.3.0`` +``3.7.2`` | ``GCCcore/11.2.0`` +``4.2.2`` | ``GCCcore/11.2.0`` +``5.1.1`` | ``GCCcore/11.3.0`` +``6.1.0`` | ``GCCcore/12.3.0`` +``6.3.1`` | ``GCCcore/12.2.0`` +``6.3.1`` | ``GCCcore/12.3.0`` +``7.4.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/Beast.md b/docs/version-specific/supported-software/b/Beast.md index 26e4a6734f..5b40bfe2cd 100644 --- a/docs/version-specific/supported-software/b/Beast.md +++ b/docs/version-specific/supported-software/b/Beast.md @@ -4,25 +4,18 @@ search: --- # Beast -BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability. +BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability. -*homepage*: +*homepage*: -version | toolchain ---------|---------- -``1.10.1`` | ``intel/2018a`` -``1.10.4`` | ``GCC/10.2.0`` -``1.10.4`` | ``GCC/8.2.0-2.31.1`` -``1.8.4`` | ``system`` -``2.4.0`` | ``foss/2016a`` -``2.4.7`` | ``foss/2017a`` -``2.5.0`` | ``foss/2018a`` -``2.5.1`` | ``foss/2018b`` -``2.5.2`` | ``GCC/8.2.0-2.31.1`` -``2.6.3`` | ``gcccuda/2019b`` -``2.6.4`` | ``GCC/10.2.0`` -``2.6.7`` | ``GCC/10.3.0`` -``2.7.3`` | ``GCC/11.3.0`` +version | versionsuffix | toolchain +--------|---------------|---------- +``1.10.4`` | | ``GCC/10.2.0`` +``2.6.4`` | | ``GCC/10.2.0`` +``2.6.7`` | | ``GCC/10.3.0`` +``2.7.3`` | | ``GCC/11.3.0`` +``2.7.7`` | ``-CUDA-12.1.1`` | ``GCC/12.3.0`` +``2.7.7`` | | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BeautifulSoup.md b/docs/version-specific/supported-software/b/BeautifulSoup.md index e14fe7f2b3..ffd6afe6db 100644 --- a/docs/version-specific/supported-software/b/BeautifulSoup.md +++ b/docs/version-specific/supported-software/b/BeautifulSoup.md @@ -8,22 +8,16 @@ Beautiful Soup is a Python library designed for quick turnaround projects like s *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.10.0`` | | ``GCCcore/10.3.0`` -``4.10.0`` | | ``GCCcore/11.2.0`` -``4.10.0`` | | ``GCCcore/11.3.0`` -``4.11.1`` | | ``GCCcore/12.2.0`` -``4.12.2`` | | ``GCCcore/12.3.0`` -``4.12.2`` | | ``GCCcore/13.2.0`` -``4.12.3`` | | ``GCCcore/13.3.0`` -``4.6.0`` | ``-Python-3.6.3`` | ``intel/2017b`` -``4.6.3`` | ``-Python-3.6.4`` | ``intel/2018a`` -``4.7.1`` | ``-Python-3.6.6`` | ``intel/2018b`` -``4.8.0`` | | ``GCCcore/8.2.0`` -``4.9.1`` | | ``GCCcore/8.3.0`` -``4.9.1`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` -``4.9.3`` | | ``GCCcore/10.2.0`` +version | toolchain +--------|---------- +``4.10.0`` | ``GCCcore/10.3.0`` +``4.10.0`` | ``GCCcore/11.2.0`` +``4.10.0`` | ``GCCcore/11.3.0`` +``4.11.1`` | ``GCCcore/12.2.0`` +``4.12.2`` | ``GCCcore/12.3.0`` +``4.12.2`` | ``GCCcore/13.2.0`` +``4.12.3`` | ``GCCcore/13.3.0`` +``4.9.3`` | ``GCCcore/10.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BerkeleyGW.md b/docs/version-specific/supported-software/b/BerkeleyGW.md index c54edd86a4..2fdd401377 100644 --- a/docs/version-specific/supported-software/b/BerkeleyGW.md +++ b/docs/version-specific/supported-software/b/BerkeleyGW.md @@ -6,25 +6,15 @@ search: The BerkeleyGW Package is a set of computer codes that calculates the quasiparticle properties and the optical responses of a large variety of materials from bulk periodic crystals to nanostructures such as slabs, wires and molecules. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.6`` | | ``intel/2016.02-GCC-4.9`` -``1.1-beta2`` | | ``intel/2016.02-GCC-4.9`` -``1.2.0`` | | ``intel/2017a`` -``1.2.0`` | | ``intel/2018a`` -``2.0.0`` | | ``foss/2017b`` -``2.0.0`` | | ``foss/2018b`` -``2.0.0`` | | ``intel/2017b`` -``2.0.0`` | | ``intel/2018a`` -``2.1.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``2.1.0`` | ``-Python-3.7.4`` | ``intel/2019b`` -``3.0.1`` | | ``foss/2020b`` -``3.0.1`` | | ``foss/2021a`` -``3.1.0`` | | ``foss/2022a`` -``3.1.0`` | | ``intel/2022a`` -``4.0`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``3.0.1`` | ``foss/2020b`` +``3.0.1`` | ``foss/2021a`` +``3.1.0`` | ``foss/2022a`` +``3.1.0`` | ``intel/2022a`` +``4.0`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BiG-SCAPE.md b/docs/version-specific/supported-software/b/BiG-SCAPE.md index bd7ae65892..b4bb84a3c4 100644 --- a/docs/version-specific/supported-software/b/BiG-SCAPE.md +++ b/docs/version-specific/supported-software/b/BiG-SCAPE.md @@ -4,15 +4,14 @@ search: --- # BiG-SCAPE -BiG-SCAPE and CORASON provide a set of tools to explore the diversity of biosynthetic gene clusters (BGCs) across large numbers of genomes, by constructing BGC sequence similarity networks, grouping BGCs into gene cluster families, and exploring gene cluster diversity linked to enzyme phylogenies. +BiG-SCAPE and CORASON provide a set of tools to explore the diversity of biosynthetic gene clusters (BGCs) across large numbers of genomes, by constructing BGC sequence similarity networks, grouping BGCs into gene cluster families, and exploring gene cluster diversity linked to enzyme phylogenies. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.1`` | ``-Python-3.7.4`` | ``intel/2019b`` -``1.1.5`` | | ``foss/2022a`` -``1.1.9`` | | ``foss/2023b`` +version | toolchain +--------|---------- +``1.1.5`` | ``foss/2022a`` +``1.1.9`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BinSanity.md b/docs/version-specific/supported-software/b/BinSanity.md deleted file mode 100644 index c10c1e1f06..0000000000 --- a/docs/version-specific/supported-software/b/BinSanity.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# BinSanity - -BinSanity contains a suite a scripts designed to cluster contigs generated from metagenomic assembly into putative genomes. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.3.5`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/BindCraft.md b/docs/version-specific/supported-software/b/BindCraft.md new file mode 100644 index 0000000000..3d8b072a56 --- /dev/null +++ b/docs/version-specific/supported-software/b/BindCraft.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# BindCraft + +Simple binder design pipeline using AlphaFold2 backpropagation, MPNN, and PyRosetta. Select your target and let the script do the rest of the work and finish once you have enough designs to order! + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``1.1.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``1.1.0`` | | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/b/Bio-DB-HTS.md b/docs/version-specific/supported-software/b/Bio-DB-HTS.md index 8aa4c77d13..9ec472d39c 100644 --- a/docs/version-specific/supported-software/b/Bio-DB-HTS.md +++ b/docs/version-specific/supported-software/b/Bio-DB-HTS.md @@ -8,17 +8,14 @@ Read files using HTSlib including BAM/CRAM, Tabix and BCF database files *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.11`` | ``-Perl-5.26.0`` | ``foss/2017b`` -``2.11`` | ``-Perl-5.28.0`` | ``foss/2018b`` -``2.11`` | ``-Perl-5.26.0`` | ``intel/2017b`` -``2.11`` | ``-Perl-5.26.1`` | ``intel/2018a`` -``3.01`` | | ``GCC/10.2.0`` -``3.01`` | | ``GCC/11.2.0`` -``3.01`` | | ``GCC/11.3.0`` -``3.01`` | | ``GCC/12.2.0`` -``3.01`` | ``-Perl-5.28.1`` | ``GCC/8.2.0-2.31.1`` +version | toolchain +--------|---------- +``3.01`` | ``GCC/10.2.0`` +``3.01`` | ``GCC/11.2.0`` +``3.01`` | ``GCC/11.3.0`` +``3.01`` | ``GCC/12.2.0`` +``3.01`` | ``GCC/12.3.0`` +``3.01`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/Bio-EUtilities.md b/docs/version-specific/supported-software/b/Bio-EUtilities.md deleted file mode 100644 index b2bc7e8b03..0000000000 --- a/docs/version-specific/supported-software/b/Bio-EUtilities.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Bio-EUtilities - -BioPerl low-level API for retrieving and storing data from NCBI eUtils - -*homepage*: - -version | toolchain ---------|---------- -``1.76`` | ``GCCcore/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/Bio-SamTools.md b/docs/version-specific/supported-software/b/Bio-SamTools.md deleted file mode 100644 index c43766a6dc..0000000000 --- a/docs/version-specific/supported-software/b/Bio-SamTools.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Bio-SamTools - -This is a Perl interface to the SAMtools sequence alignment interface. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.43`` | ``-Perl-5.24.1`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/Bio-SearchIO-hmmer.md b/docs/version-specific/supported-software/b/Bio-SearchIO-hmmer.md index 528f726372..36ab0bedb6 100644 --- a/docs/version-specific/supported-software/b/Bio-SearchIO-hmmer.md +++ b/docs/version-specific/supported-software/b/Bio-SearchIO-hmmer.md @@ -15,6 +15,8 @@ version | toolchain ``1.7.3`` | ``GCC/11.2.0`` ``1.7.3`` | ``GCC/11.3.0`` ``1.7.3`` | ``GCC/12.2.0`` +``1.7.3`` | ``GCC/12.3.0`` +``1.7.3`` | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BioPP.md b/docs/version-specific/supported-software/b/BioPP.md deleted file mode 100644 index 1fefe84cae..0000000000 --- a/docs/version-specific/supported-software/b/BioPP.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# BioPP - -Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. - -*homepage*: - -version | toolchain ---------|---------- -``2.4.1`` | ``GCC/8.2.0-2.31.1`` -``2.4.1`` | ``GCC/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/BioPerl.md b/docs/version-specific/supported-software/b/BioPerl.md index 36deb48e60..0c12d9775c 100644 --- a/docs/version-specific/supported-software/b/BioPerl.md +++ b/docs/version-specific/supported-software/b/BioPerl.md @@ -6,30 +6,18 @@ search: Bioperl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.6.924`` | ``-Perl-5.22.1`` | ``foss/2016a`` -``1.6.924`` | ``-Perl-5.20.3`` | ``intel/2016a`` -``1.7.0`` | ``-Perl-5.24.0`` | ``foss/2016b`` -``1.7.1`` | ``-Perl-5.24.0`` | ``intel/2016b`` -``1.7.1`` | ``-Perl-5.24.1`` | ``intel/2017a`` -``1.7.2`` | ``-Perl-5.28.1`` | ``GCCcore/8.2.0`` -``1.7.2`` | | ``GCCcore/8.3.0`` -``1.7.2`` | ``-Perl-5.26.0`` | ``foss/2017b`` -``1.7.2`` | ``-Perl-5.28.0`` | ``foss/2018b`` -``1.7.2`` | ``-Perl-5.26.0`` | ``intel/2017b`` -``1.7.2`` | ``-Perl-5.26.1`` | ``intel/2018a`` -``1.7.2`` | ``-Perl-5.28.0`` | ``intel/2018b`` -``1.7.7`` | | ``GCCcore/9.3.0`` -``1.7.8`` | | ``GCCcore/10.2.0`` -``1.7.8`` | | ``GCCcore/10.3.0`` -``1.7.8`` | | ``GCCcore/11.2.0`` -``1.7.8`` | | ``GCCcore/11.3.0`` -``1.7.8`` | | ``GCCcore/12.2.0`` -``1.7.8`` | | ``GCCcore/12.3.0`` -``1.7.8`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``1.7.8`` | ``GCCcore/10.2.0`` +``1.7.8`` | ``GCCcore/10.3.0`` +``1.7.8`` | ``GCCcore/11.2.0`` +``1.7.8`` | ``GCCcore/11.3.0`` +``1.7.8`` | ``GCCcore/12.2.0`` +``1.7.8`` | ``GCCcore/12.3.0`` +``1.7.8`` | ``GCCcore/13.2.0`` +``1.7.8`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BioServices.md b/docs/version-specific/supported-software/b/BioServices.md deleted file mode 100644 index 07863f6bbb..0000000000 --- a/docs/version-specific/supported-software/b/BioServices.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# BioServices - -Bioservices is a Python package that provides access to many Bioinformatices Web Services (e.g., UniProt) and a framework to easily implement Web Services wrappers (based on WSDL/SOAP or REST protocols). - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.7.9`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/Biopython.md b/docs/version-specific/supported-software/b/Biopython.md index 2c928136fd..a853ac8784 100644 --- a/docs/version-specific/supported-software/b/Biopython.md +++ b/docs/version-specific/supported-software/b/Biopython.md @@ -4,44 +4,17 @@ search: --- # Biopython -Biopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. +Biopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.65`` | ``-Python-2.7.11`` | ``foss/2016a`` -``1.68`` | ``-Python-2.7.12`` | ``foss/2016b`` -``1.68`` | ``-Python-3.5.2`` | ``foss/2016b`` -``1.68`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.68`` | ``-Python-3.5.2`` | ``intel/2016b`` -``1.70`` | ``-Python-2.7.13`` | ``foss/2017a`` -``1.70`` | ``-Python-2.7.14`` | ``foss/2017b`` -``1.70`` | ``-Python-3.6.3`` | ``foss/2017b`` -``1.70`` | ``-Python-3.6.1`` | ``intel/2017a`` -``1.70`` | ``-Python-2.7.14`` | ``intel/2017b`` -``1.70`` | ``-Python-3.6.3`` | ``intel/2017b`` -``1.71`` | ``-Python-3.6.4`` | ``foss/2018a`` -``1.71`` | ``-Python-2.7.14`` | ``intel/2018a`` -``1.71`` | ``-Python-3.6.4`` | ``intel/2018a`` -``1.72`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.72`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.72`` | ``-Python-2.7.15`` | ``intel/2018b`` -``1.73`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.73`` | | ``foss/2019a`` -``1.73`` | | ``fosscuda/2019a`` -``1.73`` | | ``intel/2019a`` -``1.74`` | | ``foss/2019a`` -``1.75`` | ``-Python-2.7.16`` | ``foss/2019b`` -``1.75`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.75`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``1.75`` | ``-Python-3.7.4`` | ``intel/2019b`` ``1.76`` | ``-Python-2.7.18`` | ``foss/2020b`` ``1.76`` | ``-Python-2.7.18`` | ``foss/2021b`` -``1.78`` | ``-Python-3.8.2`` | ``foss/2020a`` +``1.76`` | ``-Python-2.7.18`` | ``foss/2023a`` ``1.78`` | | ``foss/2020b`` ``1.78`` | | ``fosscuda/2020b`` -``1.78`` | ``-Python-3.8.2`` | ``intel/2020a`` ``1.78`` | | ``intel/2020b`` ``1.79`` | | ``foss/2021a`` ``1.79`` | | ``foss/2021b`` @@ -50,6 +23,7 @@ version | versionsuffix | toolchain ``1.81`` | | ``foss/2022b`` ``1.83`` | | ``foss/2023a`` ``1.84`` | | ``foss/2023b`` +``1.84`` | | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/Biotite.md b/docs/version-specific/supported-software/b/Biotite.md index b0d3bad16d..4840864855 100644 --- a/docs/version-specific/supported-software/b/Biotite.md +++ b/docs/version-specific/supported-software/b/Biotite.md @@ -10,6 +10,7 @@ Biotite is your Swiss army knife for bioinformatics. Whether you want to identif version | toolchain --------|---------- +``0.41.0`` | ``foss/2022a`` ``0.41.0`` | ``gfbf/2023a`` diff --git a/docs/version-specific/supported-software/b/BirdNET.md b/docs/version-specific/supported-software/b/BirdNET.md deleted file mode 100644 index c4788e5864..0000000000 --- a/docs/version-specific/supported-software/b/BirdNET.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# BirdNET - -BirdNET is a research platform that aims at recognizing birds by sound at scale. We support various hardware and operating systems such as Arduino microcontrollers, the Raspberry Pi, smartphones, web browsers, workstation PCs, and even cloud services. BirdNET is a citizen science platform as well as an analysis software for extremely large collections of audio. BirdNET aims to provide innovative tools for conservationists, biologists, and birders alike. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20201214`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/Bismark.md b/docs/version-specific/supported-software/b/Bismark.md index 1e06e383c7..bb957ab2ff 100644 --- a/docs/version-specific/supported-software/b/Bismark.md +++ b/docs/version-specific/supported-software/b/Bismark.md @@ -6,13 +6,10 @@ search: A tool to map bisulfite converted sequence reads and determine cytosine methylation states -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.19.0`` | ``intel/2017b`` -``0.20.1`` | ``foss/2018b`` -``0.20.1`` | ``intel/2018b`` ``0.23.1`` | ``foss/2021b`` ``0.24.0`` | ``GCC/11.3.0`` ``0.24.1`` | ``GCC/12.2.0`` diff --git a/docs/version-specific/supported-software/b/Bison.md b/docs/version-specific/supported-software/b/Bison.md index 805ec17204..c2b5b7a7d1 100644 --- a/docs/version-specific/supported-software/b/Bison.md +++ b/docs/version-specific/supported-software/b/Bison.md @@ -4,78 +4,21 @@ search: --- # Bison -Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables. +Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables. *homepage*: version | toolchain --------|---------- -``2.7`` | ``GCC/4.8.1`` -``2.7`` | ``GCC/4.8.4`` -``2.7`` | ``GCCcore/6.3.0`` -``2.7`` | ``GCCcore/6.4.0`` -``2.7`` | ``system`` -``3.0.2`` | ``GCC/4.8.2`` -``3.0.3`` | ``GCC/4.9.2`` -``3.0.4`` | ``GCC/4.9.2-binutils-2.25`` -``3.0.4`` | ``GCC/4.9.2`` -``3.0.4`` | ``GCC/4.9.3-2.25`` -``3.0.4`` | ``GCC/4.9.3-binutils-2.25`` -``3.0.4`` | ``GCC/4.9.3`` -``3.0.4`` | ``GCC/5.1.0-binutils-2.25`` -``3.0.4`` | ``GCCcore/4.9.2`` -``3.0.4`` | ``GCCcore/4.9.3`` -``3.0.4`` | ``GCCcore/4.9.4`` -``3.0.4`` | ``GCCcore/5.3.0`` -``3.0.4`` | ``GCCcore/5.4.0`` -``3.0.4`` | ``GCCcore/5.5.0`` -``3.0.4`` | ``GCCcore/6.1.0`` -``3.0.4`` | ``GCCcore/6.2.0`` -``3.0.4`` | ``GCCcore/6.3.0`` -``3.0.4`` | ``GCCcore/6.4.0`` -``3.0.4`` | ``GCCcore/7.1.0`` -``3.0.4`` | ``GCCcore/7.2.0`` -``3.0.4`` | ``GCCcore/7.3.0`` -``3.0.4`` | ``GCCcore/8.1.0`` -``3.0.4`` | ``GCCcore/system`` -``3.0.4`` | ``GNU/4.9.3-2.25`` -``3.0.4`` | ``foss/2016a`` -``3.0.4`` | ``foss/2016b`` -``3.0.4`` | ``gimkl/2.11.5`` -``3.0.4`` | ``gimkl/2017a`` -``3.0.4`` | ``intel/2016.02-GCC-4.9`` -``3.0.4`` | ``intel/2016a`` -``3.0.4`` | ``intel/2016b`` -``3.0.4`` | ``iomkl/2016.07`` -``3.0.4`` | ``iomkl/2016.09-GCC-4.9.3-2.25`` -``3.0.4`` | ``system`` -``3.0.5`` | ``GCCcore/5.5.0`` -``3.0.5`` | ``GCCcore/6.3.0`` -``3.0.5`` | ``GCCcore/6.4.0`` -``3.0.5`` | ``GCCcore/7.2.0`` -``3.0.5`` | ``GCCcore/7.3.0`` -``3.0.5`` | ``GCCcore/8.1.0`` -``3.0.5`` | ``GCCcore/8.2.0`` -``3.0.5`` | ``GCCcore/system`` -``3.0.5`` | ``system`` -``3.2.2`` | ``GCCcore/7.4.0`` -``3.3.2`` | ``GCCcore/8.2.0`` -``3.3.2`` | ``GCCcore/8.3.0`` -``3.3.2`` | ``GCCcore/8.4.0`` -``3.3.2`` | ``GCCcore/9.1.0`` -``3.3.2`` | ``GCCcore/9.2.0`` ``3.3.2`` | ``system`` ``3.5.2`` | ``system`` ``3.5.3`` | ``GCCcore/10.2.0`` -``3.5.3`` | ``GCCcore/9.3.0`` ``3.5.3`` | ``system`` -``3.6.1`` | ``GCCcore/10.1.0`` ``3.7.1`` | ``GCCcore/10.2.0`` ``3.7.1`` | ``system`` ``3.7.6`` | ``GCCcore/10.3.0`` ``3.7.6`` | ``GCCcore/11.1.0`` ``3.7.6`` | ``GCCcore/11.2.0`` -``3.7.6`` | ``GCCcore/9.4.0`` ``3.7.6`` | ``system`` ``3.8.2`` | ``GCCcore/11.3.0`` ``3.8.2`` | ``GCCcore/11.4.0`` @@ -87,7 +30,6 @@ version | toolchain ``3.8.2`` | ``GCCcore/13.3.0`` ``3.8.2`` | ``GCCcore/14.1.0`` ``3.8.2`` | ``GCCcore/14.2.0`` -``3.8.2`` | ``GCCcore/9.5.0`` ``3.8.2`` | ``system`` diff --git a/docs/version-specific/supported-software/b/Blender.md b/docs/version-specific/supported-software/b/Blender.md index 1fe8bda1c0..b60aa473ac 100644 --- a/docs/version-specific/supported-software/b/Blender.md +++ b/docs/version-specific/supported-software/b/Blender.md @@ -4,18 +4,12 @@ search: --- # Blender -Blender is the free and open source 3D creation suite. It supports the entirety of the 3D pipeline-modeling, rigging, animation, simulation, rendering, compositing and motion tracking, even video editing and game creation. +Blender is the free and open source 3D creation suite. It supports the entirety of the 3D pipeline, modeling, rigging, animation, simulation, rendering, compositing and motion tracking, even video editing and game creation. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2.77a`` | ``-Python-3.5.2`` | ``intel/2016b`` -``2.79`` | ``-Python-3.6.1`` | ``intel/2017a`` -``2.79b`` | ``-Python-3.6.6-CUDA-9.2.88`` | ``foss/2018b`` -``2.79b`` | ``-Python-3.6.6`` | ``intel/2018b`` -``2.81`` | ``-Python-3.7.4`` | ``foss/2019b`` -``2.81`` | ``-Python-3.7.4`` | ``intel/2019b`` ``3.0.0`` | ``-linux-x64`` | ``system`` ``3.1.2`` | ``-linux-x64`` | ``system`` ``3.2.2`` | ``-linux-x64`` | ``system`` diff --git a/docs/version-specific/supported-software/b/Blitz++.md b/docs/version-specific/supported-software/b/Blitz++.md index 5f8c052198..adee5a3a7a 100644 --- a/docs/version-specific/supported-software/b/Blitz++.md +++ b/docs/version-specific/supported-software/b/Blitz++.md @@ -6,18 +6,15 @@ search: Blitz++ is a (LGPLv3+) licensed meta-template library for array manipulation in C++ with a speed comparable to Fortran implementations, while preserving an object-oriented interface -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.10`` | ``GCCcore/6.4.0`` -``0.10`` | ``foss/2016a`` ``1.0.2`` | ``GCCcore/10.2.0`` ``1.0.2`` | ``GCCcore/11.3.0`` ``1.0.2`` | ``GCCcore/12.2.0`` ``1.0.2`` | ``GCCcore/12.3.0`` ``1.0.2`` | ``GCCcore/13.2.0`` -``1.0.2`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BlobTools.md b/docs/version-specific/supported-software/b/BlobTools.md deleted file mode 100644 index 1520633618..0000000000 --- a/docs/version-specific/supported-software/b/BlobTools.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# BlobTools - -A modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20180528`` | ``-Python-2.7.15`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/Block.md b/docs/version-specific/supported-software/b/Block.md index a7413e6fa2..b5790b48a6 100644 --- a/docs/version-specific/supported-software/b/Block.md +++ b/docs/version-specific/supported-software/b/Block.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``1.5.3-20200525`` | ``foss/2022a`` ``1.5.3-20200525`` | ``foss/2022b`` +``1.5.3-20200525`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/Blosc.md b/docs/version-specific/supported-software/b/Blosc.md index bfbe684307..d614d23385 100644 --- a/docs/version-specific/supported-software/b/Blosc.md +++ b/docs/version-specific/supported-software/b/Blosc.md @@ -6,21 +6,10 @@ search: Blosc, an extremely fast, multi-threaded, meta-compressor library -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.11.1`` | ``intel/2016b`` -``1.12.1`` | ``GCCcore/6.4.0`` -``1.12.1`` | ``foss/2016b`` -``1.12.1`` | ``foss/2017a`` -``1.12.1`` | ``intel/2017a`` -``1.14.2`` | ``GCCcore/6.4.0`` -``1.14.2`` | ``foss/2016a`` -``1.14.4`` | ``GCCcore/7.3.0`` -``1.17.0`` | ``GCCcore/8.2.0`` -``1.17.1`` | ``GCCcore/8.3.0`` -``1.17.1`` | ``GCCcore/9.3.0`` ``1.21.0`` | ``GCCcore/10.2.0`` ``1.21.0`` | ``GCCcore/10.3.0`` ``1.21.1`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/b/Bonito.md b/docs/version-specific/supported-software/b/Bonito.md index 914377e361..6244b77b4f 100644 --- a/docs/version-specific/supported-software/b/Bonito.md +++ b/docs/version-specific/supported-software/b/Bonito.md @@ -10,15 +10,9 @@ Convolution Basecaller for Oxford Nanopore Reads version | versionsuffix | toolchain --------|---------------|---------- -``0.1.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.1.0`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``0.1.4`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``0.2.0`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``0.2.2`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``0.3.2`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``0.3.5`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` ``0.3.8`` | | ``fosscuda/2020b`` ``0.4.0`` | | ``fosscuda/2020b`` +``0.8.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/Bonnie++.md b/docs/version-specific/supported-software/b/Bonnie++.md index fe2a339750..cd05fb6f4d 100644 --- a/docs/version-specific/supported-software/b/Bonnie++.md +++ b/docs/version-specific/supported-software/b/Bonnie++.md @@ -4,13 +4,12 @@ search: --- # Bonnie++ -Bonnie++-1.97: Enhanced performance Test of Filesystem I/O +Enhanced performance Test of Filesystem I/O -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.97`` | ``foss/2016a`` ``2.00a`` | ``GCC/10.3.0`` diff --git a/docs/version-specific/supported-software/b/Boost.Python-NumPy.md b/docs/version-specific/supported-software/b/Boost.Python-NumPy.md index 9f48921f66..9bc6e7c309 100644 --- a/docs/version-specific/supported-software/b/Boost.Python-NumPy.md +++ b/docs/version-specific/supported-software/b/Boost.Python-NumPy.md @@ -11,6 +11,7 @@ Boost.Python is a C++ library which enables seamless interoperability between C+ version | toolchain --------|---------- ``1.79.0`` | ``foss/2022a`` +``1.85.0`` | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/Boost.Python.md b/docs/version-specific/supported-software/b/Boost.Python.md index cd57bd67f8..54697b21bc 100644 --- a/docs/version-specific/supported-software/b/Boost.Python.md +++ b/docs/version-specific/supported-software/b/Boost.Python.md @@ -8,37 +8,15 @@ Boost.Python is a C++ library which enables seamless interoperability between C+ *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.64.0`` | | ``gompi/2019a`` -``1.64.0`` | | ``gompic/2019a`` -``1.65.1`` | ``-Python-2.7.14`` | ``foss/2017b`` -``1.65.1`` | ``-Python-2.7.14`` | ``intel/2017b`` -``1.66.0`` | ``-Python-3.6.4`` | ``foss/2018a`` -``1.66.0`` | ``-Python-2.7.14`` | ``intel/2018a`` -``1.66.0`` | ``-Python-3.6.4`` | ``intel/2018a`` -``1.67.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.67.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.67.0`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` -``1.67.0`` | ``-Python-2.7.15`` | ``intel/2018b`` -``1.67.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``1.70.0`` | | ``gompi/2019a`` -``1.70.0`` | | ``gompic/2019a`` -``1.70.0`` | | ``iimpi/2019a`` -``1.70.0`` | | ``iimpic/2019a`` -``1.71.0`` | | ``gompi/2019b`` -``1.71.0`` | | ``gompic/2019b`` -``1.71.0`` | | ``iimpi/2019b`` -``1.71.0`` | | ``iimpic/2019b`` -``1.72.0`` | | ``gompi/2020a`` -``1.72.0`` | | ``gompic/2020a`` -``1.72.0`` | | ``iimpi/2020a`` -``1.74.0`` | | ``GCC/10.2.0`` -``1.76.0`` | | ``GCC/10.3.0`` -``1.77.0`` | | ``GCC/11.2.0`` -``1.79.0`` | | ``GCC/11.3.0`` -``1.82.0`` | | ``GCC/12.3.0`` -``1.83.0`` | | ``GCC/13.2.0`` +version | toolchain +--------|---------- +``1.74.0`` | ``GCC/10.2.0`` +``1.76.0`` | ``GCC/10.3.0`` +``1.77.0`` | ``GCC/11.2.0`` +``1.79.0`` | ``GCC/11.3.0`` +``1.82.0`` | ``GCC/12.3.0`` +``1.83.0`` | ``GCC/13.2.0`` +``1.85.0`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/Boost.md b/docs/version-specific/supported-software/b/Boost.md index dc74102d4b..77f8a206cb 100644 --- a/docs/version-specific/supported-software/b/Boost.md +++ b/docs/version-specific/supported-software/b/Boost.md @@ -8,103 +8,25 @@ Boost provides free peer-reviewed portable C++ source libraries. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.54.0`` | ``-Python-2.7.12`` | ``foss/2016b`` -``1.55.0`` | | ``GCC/11.2.0`` -``1.55.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``1.55.0`` | | ``system`` -``1.57.0`` | ``-Python-2.7.10`` | ``gimkl/2.11.5`` -``1.58.0`` | ``-serial`` | ``GCC/4.9.2`` -``1.58.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``1.58.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``1.58.0`` | | ``intel/2017a`` -``1.59.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``1.59.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``1.60.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``1.60.0`` | ``-Python-3.5.1`` | ``foss/2016a`` -``1.60.0`` | | ``foss/2016a`` -``1.60.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``1.60.0`` | | ``intel/2016a`` -``1.61.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``1.61.0`` | ``-Python-3.5.1`` | ``foss/2016a`` -``1.61.0`` | | ``foss/2016a`` -``1.61.0`` | ``-Python-2.7.12`` | ``foss/2016b`` -``1.61.0`` | | ``foss/2016b`` -``1.61.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``1.61.0`` | | ``intel/2016a`` -``1.61.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.61.0`` | | ``intel/2016b`` -``1.62.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.63.0`` | ``-Python-2.7.12`` | ``foss/2016b`` -``1.63.0`` | ``-Python-3.5.2`` | ``foss/2016b`` -``1.63.0`` | ``-Python-2.7.13`` | ``foss/2017a`` -``1.63.0`` | | ``foss/2017a`` -``1.63.0`` | ``-Python-2.7.14`` | ``foss/2018a`` -``1.63.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.63.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``1.63.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``1.64.0`` | | ``gompi/2019a`` -``1.64.0`` | | ``gompic/2019a`` -``1.64.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``1.64.0`` | | ``intel/2017a`` -``1.65.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``1.65.1`` | | ``foss/2017a`` -``1.65.1`` | ``-Python-2.7.14`` | ``foss/2017b`` -``1.65.1`` | ``-Python-3.6.3`` | ``foss/2017b`` -``1.65.1`` | | ``foss/2017b`` -``1.65.1`` | ``-Python-2.7.13`` | ``intel/2017a`` -``1.65.1`` | | ``intel/2017a`` -``1.65.1`` | ``-Python-2.7.14`` | ``intel/2017b`` -``1.65.1`` | ``-Python-3.6.3`` | ``intel/2017b`` -``1.65.1`` | | ``intel/2017b`` -``1.66.0`` | ``-no_mpi`` | ``GCCcore/6.4.0`` -``1.66.0`` | ``-Python-2.7.14`` | ``foss/2018a`` -``1.66.0`` | ``-Python-3.6.4`` | ``foss/2018a`` -``1.66.0`` | | ``foss/2018a`` -``1.66.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``1.66.0`` | | ``intel/2017b`` -``1.66.0`` | ``-Python-3.6.3`` | ``intel/2018.01`` -``1.66.0`` | | ``intel/2018.01`` -``1.66.0`` | ``-Python-2.7.14`` | ``intel/2018a`` -``1.66.0`` | ``-Python-3.6.4`` | ``intel/2018a`` -``1.66.0`` | | ``intel/2018a`` -``1.67.0`` | ``-Python-2.7.14`` | ``foss/2018a`` -``1.67.0`` | | ``foss/2018b`` -``1.67.0`` | | ``fosscuda/2018b`` -``1.67.0`` | | ``intel/2018a`` -``1.67.0`` | | ``intel/2018b`` -``1.68.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.68.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.68.0`` | ``-Python-2.7.15`` | ``intel/2018b`` -``1.68.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``1.69.0`` | | ``intel/2019.01`` -``1.70.0`` | | ``gompi/2019a`` -``1.70.0`` | | ``gompic/2019a`` -``1.70.0`` | | ``iimpi/2019a`` -``1.70.0`` | | ``iimpic/2019a`` -``1.71.0`` | | ``gompi/2019b`` -``1.71.0`` | | ``gompic/2019b`` -``1.71.0`` | | ``iimpi/2019b`` -``1.71.0`` | | ``iimpic/2019b`` -``1.72.0`` | ``-no_mpi`` | ``GCCcore/9.3.0`` -``1.72.0`` | | ``gompi/2020a`` -``1.72.0`` | | ``gompic/2020a`` -``1.72.0`` | | ``iimpi/2020a`` -``1.74.0`` | | ``GCC/10.2.0`` -``1.74.0`` | | ``GCC/12.3.0`` -``1.74.0`` | | ``iccifort/2020.4.304`` -``1.75.0`` | | ``GCC/11.2.0`` -``1.76.0`` | | ``GCC/10.3.0`` -``1.76.0`` | | ``intel-compilers/2021.2.0`` -``1.77.0`` | | ``GCC/11.2.0`` -``1.77.0`` | | ``intel-compilers/2021.4.0`` -``1.79.0`` | | ``GCC/11.2.0`` -``1.79.0`` | | ``GCC/11.3.0`` -``1.81.0`` | | ``GCC/12.2.0`` -``1.82.0`` | | ``GCC/12.3.0`` -``1.83.0`` | | ``GCC/13.2.0`` -``1.85.0`` | | ``GCC/13.3.0`` +version | toolchain +--------|---------- +``1.55.0`` | ``GCC/11.2.0`` +``1.55.0`` | ``GCC/12.3.0`` +``1.74.0`` | ``GCC/10.2.0`` +``1.74.0`` | ``GCC/12.3.0`` +``1.74.0`` | ``iccifort/2020.4.304`` +``1.75.0`` | ``GCC/11.2.0`` +``1.75.0`` | ``GCC/12.3.0`` +``1.76.0`` | ``GCC/10.3.0`` +``1.76.0`` | ``intel-compilers/2021.2.0`` +``1.77.0`` | ``GCC/11.2.0`` +``1.77.0`` | ``intel-compilers/2021.4.0`` +``1.79.0`` | ``GCC/11.2.0`` +``1.79.0`` | ``GCC/11.3.0`` +``1.81.0`` | ``GCC/12.2.0`` +``1.82.0`` | ``GCC/12.3.0`` +``1.83.0`` | ``GCC/13.2.0`` +``1.85.0`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/Bottleneck.md b/docs/version-specific/supported-software/b/Bottleneck.md index f9c5682eff..35e18fd114 100644 --- a/docs/version-specific/supported-software/b/Bottleneck.md +++ b/docs/version-specific/supported-software/b/Bottleneck.md @@ -8,12 +8,10 @@ Fast NumPy array functions written in C *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.1`` | ``-Python-3.6.4`` | ``intel/2018a`` -``1.3.2`` | ``-Python-3.8.2`` | ``foss/2020a`` -``1.3.6`` | | ``foss/2022a`` -``1.3.7`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``1.3.6`` | ``foss/2022a`` +``1.3.7`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/Bowtie.md b/docs/version-specific/supported-software/b/Bowtie.md index 3300aa3408..7be56b321c 100644 --- a/docs/version-specific/supported-software/b/Bowtie.md +++ b/docs/version-specific/supported-software/b/Bowtie.md @@ -4,31 +4,13 @@ search: --- # Bowtie -Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome. +Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome. *homepage*: version | toolchain --------|---------- -``1.1.2`` | ``GCCcore/5.4.0`` -``1.1.2`` | ``GCCcore/6.3.0`` -``1.1.2`` | ``foss/2016a`` -``1.1.2`` | ``intel/2016b`` -``1.1.2`` | ``intel/2017a`` -``1.1.2`` | ``intel/2018a`` -``1.2.1.1`` | ``foss/2016b`` -``1.2.1.1`` | ``intel/2017b`` -``1.2.2`` | ``foss/2018b`` -``1.2.2`` | ``intel/2017b`` -``1.2.2`` | ``intel/2018a`` -``1.2.3`` | ``GCC/8.2.0-2.31.1`` -``1.2.3`` | ``GCC/8.3.0`` -``1.2.3`` | ``GCC/9.3.0`` -``1.2.3`` | ``foss/2018b`` -``1.2.3`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``1.2.3`` | ``iccifort/2019.5.281`` ``1.3.0`` | ``GCC/10.2.0`` -``1.3.0`` | ``GCC/9.3.0`` ``1.3.1`` | ``GCC/10.3.0`` ``1.3.1`` | ``GCC/11.2.0`` ``1.3.1`` | ``GCC/11.3.0`` diff --git a/docs/version-specific/supported-software/b/Bowtie2.md b/docs/version-specific/supported-software/b/Bowtie2.md index 4c66a4c110..6b38c66be9 100644 --- a/docs/version-specific/supported-software/b/Bowtie2.md +++ b/docs/version-specific/supported-software/b/Bowtie2.md @@ -4,39 +4,21 @@ search: --- # Bowtie2 -Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes. +Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes. *homepage*: -version | toolchain ---------|---------- -``2.2.8`` | ``foss/2016a`` -``2.2.9`` | ``foss/2016a`` -``2.2.9`` | ``intel/2016b`` -``2.3.2`` | ``foss/2016b`` -``2.3.2`` | ``foss/2017a`` -``2.3.2`` | ``intel/2017a`` -``2.3.3.1`` | ``intel/2017b`` -``2.3.4`` | ``intel/2017b`` -``2.3.4.1`` | ``foss/2017b`` -``2.3.4.1`` | ``intel/2017b`` -``2.3.4.1`` | ``intel/2018a`` -``2.3.4.2`` | ``foss/2018b`` -``2.3.4.2`` | ``intel/2018b`` -``2.3.4.3`` | ``foss/2017b`` -``2.3.5.1`` | ``GCC/8.2.0-2.31.1`` -``2.3.5.1`` | ``GCC/8.3.0`` -``2.3.5.1`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``2.3.5.1`` | ``iccifort/2019.5.281`` -``2.4.1`` | ``GCC/9.3.0`` -``2.4.2`` | ``GCC/10.2.0`` -``2.4.2`` | ``GCC/9.3.0`` -``2.4.4`` | ``GCC/10.3.0`` -``2.4.4`` | ``GCC/11.2.0`` -``2.4.5`` | ``GCC/11.3.0`` -``2.5.1`` | ``GCC/10.3.0`` -``2.5.1`` | ``GCC/12.2.0`` -``2.5.1`` | ``GCC/12.3.0`` +version | versionsuffix | toolchain +--------|---------------|---------- +``2.4.2`` | | ``GCC/10.2.0`` +``2.4.4`` | | ``GCC/10.3.0`` +``2.4.4`` | | ``GCC/11.2.0`` +``2.4.5`` | | ``GCC/11.3.0`` +``2.5.1`` | | ``GCC/10.3.0`` +``2.5.1`` | | ``GCC/12.2.0`` +``2.5.1`` | | ``GCC/12.3.0`` +``2.5.4`` | ``-Python-2.7.18`` | ``GCC/12.3.0`` +``2.5.4`` | | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/Bracken.md b/docs/version-specific/supported-software/b/Bracken.md index e21b34190d..7eff31ff92 100644 --- a/docs/version-specific/supported-software/b/Bracken.md +++ b/docs/version-specific/supported-software/b/Bracken.md @@ -4,13 +4,12 @@ search: --- # Bracken -Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample. Braken uses the taxonomy labels assigned by Kraken, a highly accurate metagenomics classification algorithm, to estimate the number of reads originating from each species present in a sample. Kraken classifies reads to the best matching location in the taxonomic tree, but does not estimate abundances of species. We use the Kraken database itself to derive probabilities that describe how much sequence from each genome is identical to other genomes in the database, and combine this information with the assignments for a particular sample to estimate abundance at the species level, the genus level, or above. Combined with the Kraken classifier, Bracken produces accurate species- and genus-level abundance estimates even when a sample contains two or more near-identical species. NOTE: Bracken is compatible with both Kraken 1 and Kraken 2. However, the default kmer length is different depending on the version of Kraken used. If you use Kraken 1 defaults, specify 31 as the kmer length. If you use Kraken 2 defaults, specify 35 as the kmer length. +Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample. Braken uses the taxonomy labels assigned by Kraken, a highly accurate metagenomics classification algorithm, to estimate the number of reads originating from each species present in a sample. Kraken classifies reads to the best matching location in the taxonomic tree, but does not estimate abundances of species. We use the Kraken database itself to derive probabilities that describe how much sequence from each genome is identical to other genomes in the database, and combine this information with the assignments for a particular sample to estimate abundance at the species level, the genus level, or above. Combined with the Kraken classifier, Bracken produces accurate species- and genus-level abundance estimates even when a sample contains two or more near-identical species. NOTE: Bracken is compatible with both Kraken 1 and Kraken 2. However, the default kmer length is different depending on the version of Kraken used. If you use Kraken 1 defaults, specify 31 as the kmer length. If you use Kraken 2 defaults, specify 35 as the kmer length. *homepage*: version | toolchain --------|---------- -``2.6.0`` | ``GCCcore/9.3.0`` ``2.6.2`` | ``GCCcore/11.2.0`` ``2.7`` | ``GCCcore/11.2.0`` ``2.9`` | ``GCCcore/10.3.0`` diff --git a/docs/version-specific/supported-software/b/BreakDancer.md b/docs/version-specific/supported-software/b/BreakDancer.md deleted file mode 100644 index c875e6751d..0000000000 --- a/docs/version-specific/supported-software/b/BreakDancer.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# BreakDancer - -BreakDancer is a Perl/C++ package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads - -*homepage*: - -version | toolchain ---------|---------- -``1.4.5`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/Brotli-python.md b/docs/version-specific/supported-software/b/Brotli-python.md index 00bbe899a9..f15571e6b8 100644 --- a/docs/version-specific/supported-software/b/Brotli-python.md +++ b/docs/version-specific/supported-software/b/Brotli-python.md @@ -16,6 +16,7 @@ version | toolchain ``1.0.9`` | ``GCCcore/12.2.0`` ``1.0.9`` | ``GCCcore/12.3.0`` ``1.1.0`` | ``GCCcore/13.2.0`` +``1.1.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/Brotli.md b/docs/version-specific/supported-software/b/Brotli.md index e48f698698..8c9dad6407 100644 --- a/docs/version-specific/supported-software/b/Brotli.md +++ b/docs/version-specific/supported-software/b/Brotli.md @@ -16,7 +16,6 @@ version | toolchain ``1.0.9`` | ``GCCcore/11.3.0`` ``1.0.9`` | ``GCCcore/12.2.0`` ``1.0.9`` | ``GCCcore/12.3.0`` -``1.0.9`` | ``GCCcore/8.3.0`` ``1.1.0`` | ``GCCcore/13.2.0`` ``1.1.0`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/b/Bsoft.md b/docs/version-specific/supported-software/b/Bsoft.md deleted file mode 100644 index 5fa9e31fdd..0000000000 --- a/docs/version-specific/supported-software/b/Bsoft.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Bsoft - -Bsoft is a collection of programs and a platform for development of software for image and molecular processing in structural biology. Problems in structural biology are approached with a highly modular design, allowing fast development of new algorithms without the burden of issues such as file I/O. It provides an easily accessible interface, a resource that can be and has been used in other packages. - -*homepage*: - -version | toolchain ---------|---------- -``2.0.2`` | ``foss/2017b`` -``2.0.7`` | ``GCC/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/Bullet.md b/docs/version-specific/supported-software/b/Bullet.md deleted file mode 100644 index 48e7724e8a..0000000000 --- a/docs/version-specific/supported-software/b/Bullet.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Bullet - -Bullet professional 3D Game Multiphysics Library provides state of the art collision detection, soft body and rigid body dynamics. - -*homepage*: - -version | toolchain ---------|---------- -``2.83.7`` | ``foss/2016a`` -``2.83.7`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/bakta.md b/docs/version-specific/supported-software/b/bakta.md new file mode 100644 index 0000000000..7bb744b0f7 --- /dev/null +++ b/docs/version-specific/supported-software/b/bakta.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# bakta + +Bakta is a tool for the rapid & standardized annotation of bacterial genomes and plasmids from both isolates and MAGs. It provides dbxref-rich, sORF-including and taxon-independent annotations in machine-readable JSON & bioinformatics standard file formats for automated downstream analysis. + +*homepage*: + +version | toolchain +--------|---------- +``1.10.1`` | ``foss/2023b`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/b/bam-readcount.md b/docs/version-specific/supported-software/b/bam-readcount.md index aba564601e..c48bef4ed7 100644 --- a/docs/version-specific/supported-software/b/bam-readcount.md +++ b/docs/version-specific/supported-software/b/bam-readcount.md @@ -11,8 +11,6 @@ Count DNA sequence reads in BAM files version | toolchain --------|---------- ``0.8.0`` | ``GCC/11.2.0`` -``0.8.0`` | ``GCC/9.3.0`` -``0.8.0`` | ``foss/2018b`` ``1.0.1`` | ``GCC/12.2.0`` diff --git a/docs/version-specific/supported-software/b/bamtofastq.md b/docs/version-specific/supported-software/b/bamtofastq.md index e06cae439d..1cb2968fde 100644 --- a/docs/version-specific/supported-software/b/bamtofastq.md +++ b/docs/version-specific/supported-software/b/bamtofastq.md @@ -11,6 +11,7 @@ Convert 10x BAM files to the original FASTQs compatible with 10x pipelines. version | toolchain --------|---------- ``1.4.0`` | ``GCCcore/10.3.0`` +``1.4.1`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/barrnap.md b/docs/version-specific/supported-software/b/barrnap.md index 71a90db7fb..da4c464622 100644 --- a/docs/version-specific/supported-software/b/barrnap.md +++ b/docs/version-specific/supported-software/b/barrnap.md @@ -10,8 +10,6 @@ Barrnap (BAsic Rapid Ribosomal RNA Predictor) predicts the location of ribosomal version | toolchain --------|---------- -``0.9`` | ``GCC/8.2.0-2.31.1`` -``0.9`` | ``foss/2018b`` ``0.9`` | ``gompi/2020b`` ``0.9`` | ``gompi/2021b`` ``0.9`` | ``gompi/2022a`` diff --git a/docs/version-specific/supported-software/b/basemap.md b/docs/version-specific/supported-software/b/basemap.md index 99e6ef2a49..49ba118b87 100644 --- a/docs/version-specific/supported-software/b/basemap.md +++ b/docs/version-specific/supported-software/b/basemap.md @@ -6,17 +6,13 @@ search: The matplotlib basemap toolkit is a library for plotting 2D data on maps in Python -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.7`` | ``-Python-2.7.13`` | ``intel/2017a`` -``1.0.7`` | ``-Python-3.6.3`` | ``intel/2017b`` -``1.0.7`` | ``-Python-3.6.4`` | ``intel/2018a`` -``1.2.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``1.2.2`` | ``-Python-3.8.2`` | ``foss/2020a`` -``1.3.6`` | | ``foss/2022a`` -``1.3.9`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``1.3.6`` | ``foss/2022a`` +``1.3.9`` | ``foss/2023a`` +``1.4.1`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/bases2fastq.md b/docs/version-specific/supported-software/b/bases2fastq.md index 5f2c058446..54d6aacaec 100644 --- a/docs/version-specific/supported-software/b/bases2fastq.md +++ b/docs/version-specific/supported-software/b/bases2fastq.md @@ -4,7 +4,7 @@ search: --- # bases2fastq -Bases2Fastq Software demultiplexes sequencing data and converts base calls into FASTQ files for secondary analysis with the FASTQ-compatible software of your choice. The Element AVITI™ System records base calls, which are the main output of a sequencing run, with associated quality scores (Q-scores) in bases files. Bases files must be converted into the FASTQ file format for secondary analysis. To generate QC reports, also load BeautifulSoup and bokeh. +Bases2Fastq Software demultiplexes sequencing data and converts base calls into FASTQ files for secondary analysis with the FASTQ-compatible software of your choice. The Element AVITI™ System records base calls, which are the main output of a sequencing run, with associated quality scores (Q-scores) in bases files. Bases files must be converted into the FASTQ file format for secondary analysis. To generate QC reports, also load BeautifulSoup and bokeh. *homepage*: diff --git a/docs/version-specific/supported-software/b/bat.md b/docs/version-specific/supported-software/b/bat.md deleted file mode 100644 index 91d6777eef..0000000000 --- a/docs/version-specific/supported-software/b/bat.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# bat - -The BAT Python package supports the processing and analysis of Bro data with Pandas, scikit-learn, and Spark - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.3.3`` | ``-Python-3.6.3`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/bayesian-optimization.md b/docs/version-specific/supported-software/b/bayesian-optimization.md index 58b07fc06b..80ff489b84 100644 --- a/docs/version-specific/supported-software/b/bayesian-optimization.md +++ b/docs/version-specific/supported-software/b/bayesian-optimization.md @@ -11,6 +11,7 @@ Pure Python implementation of bayesian global optimization with gaussian process version | toolchain --------|---------- ``1.5.1`` | ``foss/2023a`` +``2.0.3`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/bbFTP.md b/docs/version-specific/supported-software/b/bbFTP.md index e3d66f1321..99a27a478e 100644 --- a/docs/version-specific/supported-software/b/bbFTP.md +++ b/docs/version-specific/supported-software/b/bbFTP.md @@ -10,8 +10,6 @@ bbFTP is a file transfer software. It implements its own transfer protocol, wh version | toolchain --------|---------- -``3.2.1`` | ``GCCcore/9.3.0`` -``3.2.1`` | ``intel/2016a`` ``3.2.1`` | ``system`` diff --git a/docs/version-specific/supported-software/b/bbcp.md b/docs/version-specific/supported-software/b/bbcp.md deleted file mode 100644 index 12b83ce248..0000000000 --- a/docs/version-specific/supported-software/b/bbcp.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# bbcp - -BBCP is an alternative to Gridftp when transferring large amounts of data, capable of breaking up your transfer into multiple simultaneous transferring streams, thereby transferring data much faster than single-streaming utilities such as SCP and SFTP. See details at http://pcbunn.cithep.caltech.edu/bbcp/using_bbcp.htm or http://www.nics.tennessee.edu/computing-resources/data-transfer/bbcp - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``12.01.30.00.0`` | ``-amd64_linux26`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/bcbio-gff.md b/docs/version-specific/supported-software/b/bcbio-gff.md index c38b984e5d..6a77fc56a5 100644 --- a/docs/version-specific/supported-software/b/bcbio-gff.md +++ b/docs/version-specific/supported-software/b/bcbio-gff.md @@ -8,13 +8,12 @@ Read and write Generic Feature Format (GFF) with Biopython integration. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.6.6`` | ``-Python-3.8.2`` | ``foss/2020a`` -``0.6.7`` | | ``foss/2021a`` -``0.7.0`` | | ``foss/2020b`` -``0.7.0`` | | ``foss/2022a`` -``0.7.0`` | | ``foss/2022b`` +version | toolchain +--------|---------- +``0.6.7`` | ``foss/2021a`` +``0.7.0`` | ``foss/2020b`` +``0.7.0`` | ``foss/2022a`` +``0.7.0`` | ``foss/2022b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/bcgTree.md b/docs/version-specific/supported-software/b/bcgTree.md deleted file mode 100644 index 4193b01a75..0000000000 --- a/docs/version-specific/supported-software/b/bcgTree.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# bcgTree - -Automatized phylogenetic tree building from bacterial core genomes. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.10`` | ``-Perl-5.26.1`` | ``intel/2018a`` -``1.1.0`` | ``-Perl-5.28.0`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/bcl-convert.md b/docs/version-specific/supported-software/b/bcl-convert.md index 30d093ad13..1c36c04186 100644 --- a/docs/version-specific/supported-software/b/bcl-convert.md +++ b/docs/version-specific/supported-software/b/bcl-convert.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``4.0.3-2`` | ``el7.x86_64`` | ``system`` ``4.2.7-2`` | ``el7.x86_64`` | ``system`` +``4.3.13-2`` | ``.el8.x86_64`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/bcl2fastq2.md b/docs/version-specific/supported-software/b/bcl2fastq2.md index 00b87c4674..393b006f44 100644 --- a/docs/version-specific/supported-software/b/bcl2fastq2.md +++ b/docs/version-specific/supported-software/b/bcl2fastq2.md @@ -8,20 +8,13 @@ bcl2fastq Conversion Software both demultiplexes data and converts BCL files gen *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.19.1`` | ``-Python-2.7.12`` | ``foss/2016b`` -``2.20.0`` | | ``GCC/10.2.0`` -``2.20.0`` | | ``GCC/10.3.0`` -``2.20.0`` | | ``GCC/11.2.0`` -``2.20.0`` | | ``GCC/11.3.0`` -``2.20.0`` | | ``GCC/12.2.0`` -``2.20.0`` | | ``GCC/8.3.0`` -``2.20.0`` | | ``GCC/9.3.0`` -``2.20.0`` | ``-Python-2.7.12`` | ``foss/2016b`` -``2.20.0`` | | ``foss/2018b`` -``2.20.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.20.0`` | | ``intel/2019a`` +version | toolchain +--------|---------- +``2.20.0`` | ``GCC/10.2.0`` +``2.20.0`` | ``GCC/10.3.0`` +``2.20.0`` | ``GCC/11.2.0`` +``2.20.0`` | ``GCC/11.3.0`` +``2.20.0`` | ``GCC/12.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/bcolz.md b/docs/version-specific/supported-software/b/bcolz.md index e8b225d35e..460d3067f4 100644 --- a/docs/version-specific/supported-software/b/bcolz.md +++ b/docs/version-specific/supported-software/b/bcolz.md @@ -4,15 +4,13 @@ search: --- # bcolz -bcolz provides columnar, chunked data containers that can be compressed either in-memory and on-disk. Column storage allows for efficiently querying tables, as well as for cheap column addition and removal. It is based on NumPy, and uses it as the standard data container to communicate with bcolz objects, but it also comes with support for import/export facilities to/from HDF5/PyTables tables and pandas dataframes. +bcolz provides columnar, chunked data containers that can be compressed either in-memory and on-disk. Column storage allows for efficiently querying tables, as well as for cheap column addition and removal. It is based on NumPy, and uses it as the standard data container to communicate with bcolz objects, but it also comes with support for import/export facilities to/from HDF5/PyTables tables and pandas dataframes. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.1`` | ``-Python-2.7.13`` | ``foss/2017a`` -``1.2.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``1.2.1`` | | ``foss/2020b`` +version | toolchain +--------|---------- +``1.2.1`` | ``foss/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/beagle-lib.md b/docs/version-specific/supported-software/b/beagle-lib.md index eb21e3fdbf..e8f5c3deee 100644 --- a/docs/version-specific/supported-software/b/beagle-lib.md +++ b/docs/version-specific/supported-software/b/beagle-lib.md @@ -10,20 +10,11 @@ beagle-lib is a high-performance library that can perform the core calculations version | versionsuffix | toolchain --------|---------------|---------- -``2.1.2`` | | ``foss/2016a`` -``2.1.2`` | | ``foss/2017a`` -``3.0.1`` | | ``foss/2018a`` -``3.0.1`` | | ``intel/2018a`` -``3.0.2`` | ``-CUDA-9.2.88`` | ``foss/2018b`` -``3.0.2`` | | ``foss/2018b`` ``3.1.2`` | | ``GCC/10.2.0`` ``3.1.2`` | | ``GCC/10.3.0`` -``3.1.2`` | | ``GCC/8.2.0-2.31.1`` -``3.1.2`` | | ``GCC/9.3.0`` -``3.1.2`` | | ``gcccuda/2019b`` -``3.1.2`` | | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` ``4.0.0`` | | ``GCC/11.3.0`` ``4.0.1`` | ``-CUDA-12.1.1`` | ``GCC/12.3.0`` +``4.0.1`` | | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/behave.md b/docs/version-specific/supported-software/b/behave.md deleted file mode 100644 index 5c4f9f8bb7..0000000000 --- a/docs/version-specific/supported-software/b/behave.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# behave - -behave: Behavior-driven development (or BDD) is an agile software development technique that encourages collaboration between developers, QA and non-technical or business participants in a software project. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.5`` | ``-Python-2.7.12`` | ``foss/2016b`` -``1.2.6`` | ``-Python-3.6.4`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/bgen-reader.md b/docs/version-specific/supported-software/b/bgen-reader.md deleted file mode 100644 index ec59e45899..0000000000 --- a/docs/version-specific/supported-software/b/bgen-reader.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# bgen-reader - -A bgen file format reader. This python package is a wrapper around the bgen library, a low-memory footprint reader that efficiently reads bgen files. It fully supports the bgen format specifications: 1.2 and 1.3; as well as their optional compressed formats. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0.2`` | ``-Python-3.6.6`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/bgen.md b/docs/version-specific/supported-software/b/bgen.md index 62006e8e4f..4f0313bc8d 100644 --- a/docs/version-specific/supported-software/b/bgen.md +++ b/docs/version-specific/supported-software/b/bgen.md @@ -10,8 +10,6 @@ A BGEN file format reader. It fully supports the BGEN format specifications 1.2 version | toolchain --------|---------- -``3.0.2`` | ``GCCcore/7.3.0`` -``3.0.3`` | ``GCCcore/9.3.0`` ``4.1.3`` | ``GCCcore/10.2.0`` diff --git a/docs/version-specific/supported-software/b/bin2cell.md b/docs/version-specific/supported-software/b/bin2cell.md new file mode 100644 index 0000000000..b4b7a8d025 --- /dev/null +++ b/docs/version-specific/supported-software/b/bin2cell.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# bin2cell + +Bin2cell proposes 2um bin to cell groupings based on segmentation, which can be done on the morphology image and/or a visualisation of the gene expression. + +*homepage*: + +version | toolchain +--------|---------- +``0.3.2`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/b/binutils.md b/docs/version-specific/supported-software/b/binutils.md index cde65a8c5e..64694163ca 100644 --- a/docs/version-specific/supported-software/b/binutils.md +++ b/docs/version-specific/supported-software/b/binutils.md @@ -6,61 +6,21 @@ search: binutils: GNU binary utilities -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.25`` | ``GCC/4.9.2-binutils-2.25`` -``2.25`` | ``GCC/4.9.2`` -``2.25`` | ``GCC/4.9.3-binutils-2.25`` -``2.25`` | ``GCC/4.9.3`` -``2.25`` | ``GCC/5.1.0-binutils-2.25`` -``2.25`` | ``GCCcore/4.9.2`` -``2.25`` | ``GCCcore/4.9.3`` -``2.25`` | ``GCCcore/4.9.4`` -``2.25.1`` | ``system`` -``2.25`` | ``system`` -``2.26`` | ``GCCcore/5.3.0`` -``2.26`` | ``GCCcore/5.4.0`` -``2.26`` | ``GCCcore/5.5.0`` -``2.26`` | ``GCCcore/6.3.0`` -``2.26`` | ``system`` -``2.27`` | ``GCCcore/6.1.0`` -``2.27`` | ``GCCcore/6.2.0`` -``2.27`` | ``GCCcore/6.3.0`` -``2.27`` | ``system`` -``2.28`` | ``GCCcore/6.3.0`` -``2.28`` | ``GCCcore/6.4.0`` -``2.28`` | ``GCCcore/7.1.0`` -``2.28`` | ``system`` -``2.29`` | ``GCCcore/7.2.0`` -``2.29`` | ``GCCcore/system`` -``2.29`` | ``system`` -``2.30`` | ``GCCcore/7.3.0`` -``2.30`` | ``GCCcore/8.1.0`` -``2.30`` | ``system`` -``2.31.1`` | ``GCCcore/7.4.0`` -``2.31.1`` | ``GCCcore/8.2.0`` -``2.31.1`` | ``system`` -``2.32`` | ``GCCcore/8.3.0`` -``2.32`` | ``GCCcore/9.1.0`` -``2.32`` | ``GCCcore/9.2.0`` ``2.32`` | ``system`` -``2.34`` | ``GCCcore/10.1.0`` -``2.34`` | ``GCCcore/9.3.0`` ``2.34`` | ``system`` ``2.35`` | ``GCCcore/10.2.0`` ``2.35`` | ``system`` ``2.36.1`` | ``GCCcore/10.3.0`` ``2.36.1`` | ``GCCcore/11.1.0`` -``2.36.1`` | ``GCCcore/8.4.0`` -``2.36.1`` | ``GCCcore/9.4.0`` ``2.36.1`` | ``system`` ``2.37`` | ``GCCcore/11.2.0`` ``2.37`` | ``system`` ``2.38`` | ``GCCcore/11.3.0`` ``2.38`` | ``GCCcore/12.1.0`` -``2.38`` | ``GCCcore/9.5.0`` ``2.38`` | ``system`` ``2.39`` | ``GCCcore/12.2.0`` ``2.39`` | ``system`` diff --git a/docs/version-specific/supported-software/b/bioawk.md b/docs/version-specific/supported-software/b/bioawk.md index c702a07d1a..98411903cf 100644 --- a/docs/version-specific/supported-software/b/bioawk.md +++ b/docs/version-specific/supported-software/b/bioawk.md @@ -12,7 +12,6 @@ version | toolchain --------|---------- ``1.0`` | ``GCC/10.3.0`` ``1.0`` | ``GCC/11.2.0`` -``1.0`` | ``foss/2018b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/biobambam2.md b/docs/version-specific/supported-software/b/biobambam2.md index 16a4d2f327..8e83c4492b 100644 --- a/docs/version-specific/supported-software/b/biobambam2.md +++ b/docs/version-specific/supported-software/b/biobambam2.md @@ -12,7 +12,6 @@ version | toolchain --------|---------- ``2.0.185`` | ``GCC/12.3.0`` ``2.0.87`` | ``GCC/11.3.0`` -``2.0.87`` | ``intel/2018a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/biom-format.md b/docs/version-specific/supported-software/b/biom-format.md index f5875d1d9d..3703ce6ad2 100644 --- a/docs/version-specific/supported-software/b/biom-format.md +++ b/docs/version-specific/supported-software/b/biom-format.md @@ -8,14 +8,13 @@ The BIOM file format (canonically pronounced biome) is designed to be a general *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1.10`` | ``-Python-3.8.2`` | ``foss/2020a`` -``2.1.12`` | | ``foss/2021b`` -``2.1.14`` | | ``foss/2022a`` -``2.1.15`` | | ``foss/2022b`` -``2.1.15`` | | ``foss/2023a`` -``2.1.16`` | | ``foss/2023b`` +version | toolchain +--------|---------- +``2.1.12`` | ``foss/2021b`` +``2.1.14`` | ``foss/2022a`` +``2.1.15`` | ``foss/2022b`` +``2.1.15`` | ``foss/2023a`` +``2.1.16`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/biomart-perl.md b/docs/version-specific/supported-software/b/biomart-perl.md deleted file mode 100644 index b411e9d1bc..0000000000 --- a/docs/version-specific/supported-software/b/biomart-perl.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# biomart-perl - -The BioMart Perl API allows you to go a step further with BioMart and integrate BioMart Perl Code into custom Perl scripts. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.7_e6db561`` | ``-Perl-5.26.0`` | ``GCCcore/6.4.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/biscuit.md b/docs/version-specific/supported-software/b/biscuit.md deleted file mode 100644 index d4c3b55327..0000000000 --- a/docs/version-specific/supported-software/b/biscuit.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# biscuit - -Utilities to help analyze bisulfite-treated sequence data - -*homepage*: - -version | toolchain ---------|---------- -``0.1.4`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/bitarray.md b/docs/version-specific/supported-software/b/bitarray.md deleted file mode 100644 index 32f52f3a88..0000000000 --- a/docs/version-specific/supported-software/b/bitarray.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# bitarray - -bitarray provides an object type which efficiently represents an array of booleans - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.8.3`` | ``-Python-2.7.15`` | ``intel/2018b`` -``0.8.3`` | ``-Python-3.6.6`` | ``intel/2018b`` -``1.2.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.5.3`` | ``-Python-2.7.16`` | ``GCC/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/bitshuffle.md b/docs/version-specific/supported-software/b/bitshuffle.md index a18c3cfe4d..8587843126 100644 --- a/docs/version-specific/supported-software/b/bitshuffle.md +++ b/docs/version-specific/supported-software/b/bitshuffle.md @@ -11,6 +11,7 @@ Filter for improving compression of typed binary data. Bitshuffle is an algorith version | toolchain --------|---------- ``0.5.1`` | ``foss/2023a`` +``0.5.2`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/attrdict.md b/docs/version-specific/supported-software/b/black.md similarity index 54% rename from docs/version-specific/supported-software/a/attrdict.md rename to docs/version-specific/supported-software/b/black.md index 46cc1c6549..b85df6d07e 100644 --- a/docs/version-specific/supported-software/a/attrdict.md +++ b/docs/version-specific/supported-software/b/black.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# attrdict +# black -AttrDict is a Python library that provides mapping objects that allow their elements to be accessed both as keys and as attributes. +Black is the uncompromising Python code formatter. By using it, you agree to cede control over minutiae of hand-formatting. In return, Black gives you speed, determinism, and freedom from pycodestyle nagging about formatting. You will save time and mental energy for more important matters. Blackened code looks the same regardless of the project you're reading. Formatting becomes transparent after a while and you can focus on the content instead. Black makes code review faster by producing the smallest diffs possible. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0.1`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` +version | toolchain +--------|---------- +``24.10.0`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/bmtagger.md b/docs/version-specific/supported-software/b/bmtagger.md index a52364de91..7fa3666daf 100644 --- a/docs/version-specific/supported-software/b/bmtagger.md +++ b/docs/version-specific/supported-software/b/bmtagger.md @@ -8,11 +8,10 @@ Best Match Tagger for removing human reads from metagenomics datasets *homepage*: -version | toolchain ---------|---------- -``3.101`` | ``foss/2018b`` -``3.101`` | ``gompi/2019a`` -``3.101`` | ``gompi/2020b`` +version | versionsuffix | toolchain +--------|---------------|---------- +``3.101`` | | ``gompi/2020b`` +``3.101`` | ``-Java-11`` | ``gompi/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/bnpy.md b/docs/version-specific/supported-software/b/bnpy.md deleted file mode 100644 index d1e567b2c5..0000000000 --- a/docs/version-specific/supported-software/b/bnpy.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# bnpy - -Bayesian nonparametric machine learning for python provides code for training popular clustering models on large datasets. The focus is on Bayesian nonparametric models based on the Dirichlet process, but it also provides parametric counterparts. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1.6`` | ``-Python-2.7.15`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/bokeh.md b/docs/version-specific/supported-software/b/bokeh.md index 8c3e2ac7ac..a87f5e3c27 100644 --- a/docs/version-specific/supported-software/b/bokeh.md +++ b/docs/version-specific/supported-software/b/bokeh.md @@ -8,29 +8,19 @@ Statistical and novel interactive HTML plots for Python *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.12.15`` | ``-Python-3.6.4`` | ``intel/2018a`` -``0.12.3`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.12.3`` | ``-Python-3.5.2`` | ``intel/2016b`` -``1.0.4`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.0.4`` | ``-Python-3.6.6`` | ``intel/2018b`` -``1.3.4`` | ``-Python-3.7.2`` | ``foss/2019a`` -``1.4.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.4.0`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``1.4.0`` | ``-Python-3.7.4`` | ``intel/2019b`` -``2.0.2`` | ``-Python-3.8.2`` | ``foss/2020a`` -``2.0.2`` | ``-Python-3.8.2`` | ``intel/2020a`` -``2.2.3`` | | ``foss/2020b`` -``2.2.3`` | | ``fosscuda/2020b`` -``2.2.3`` | | ``intel/2020b`` -``2.2.3`` | | ``intelcuda/2020b`` -``2.4.1`` | | ``foss/2021a`` -``2.4.2`` | | ``foss/2021b`` -``2.4.3`` | | ``foss/2022a`` -``3.2.1`` | | ``foss/2022b`` -``3.2.2`` | | ``foss/2023a`` -``3.4.1`` | | ``gfbf/2023b`` +version | toolchain +--------|---------- +``2.2.3`` | ``foss/2020b`` +``2.2.3`` | ``fosscuda/2020b`` +``2.2.3`` | ``intel/2020b`` +``2.2.3`` | ``intelcuda/2020b`` +``2.4.1`` | ``foss/2021a`` +``2.4.2`` | ``foss/2021b`` +``2.4.3`` | ``foss/2022a`` +``3.2.1`` | ``foss/2022b`` +``3.2.2`` | ``foss/2023a`` +``3.4.1`` | ``gfbf/2023b`` +``3.6.0`` | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/boto3.md b/docs/version-specific/supported-software/b/boto3.md index f58785efa6..ff25d11c05 100644 --- a/docs/version-specific/supported-software/b/boto3.md +++ b/docs/version-specific/supported-software/b/boto3.md @@ -15,6 +15,8 @@ version | toolchain ``1.26.163`` | ``GCCcore/12.2.0`` ``1.26.37`` | ``GCCcore/11.3.0`` ``1.28.70`` | ``GCCcore/12.3.0`` +``1.35.36`` | ``GCCcore/13.3.0`` +``1.36.16`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/bpp.md b/docs/version-specific/supported-software/b/bpp.md index c44241c0b4..1dee50275c 100644 --- a/docs/version-specific/supported-software/b/bpp.md +++ b/docs/version-specific/supported-software/b/bpp.md @@ -10,7 +10,6 @@ The aim of this project is to implement a versatile high-performance version of version | toolchain --------|---------- -``4.3.8`` | ``GCC/8.3.0`` ``4.4.0`` | ``GCC/10.3.0`` diff --git a/docs/version-specific/supported-software/b/breseq.md b/docs/version-specific/supported-software/b/breseq.md index 9f01b17ab9..92aedc3cba 100644 --- a/docs/version-specific/supported-software/b/breseq.md +++ b/docs/version-specific/supported-software/b/breseq.md @@ -8,12 +8,10 @@ breseq is a computational pipeline for the analysis of short-read re-sequencing *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.35.0`` | ``-R-3.6.0`` | ``intel/2019a`` -``0.35.4`` | ``-R-4.0.0`` | ``foss/2020a`` -``0.36.1`` | | ``foss/2021b`` -``0.38.1`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``0.36.1`` | ``foss/2021b`` +``0.38.1`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/bsddb3.md b/docs/version-specific/supported-software/b/bsddb3.md index 48cf51d8d1..b0415d5971 100644 --- a/docs/version-specific/supported-software/b/bsddb3.md +++ b/docs/version-specific/supported-software/b/bsddb3.md @@ -8,12 +8,10 @@ bsddb3 is a nearly complete Python binding of the Oracle/Sleepycat C API for the *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``6.2.6`` | | ``GCCcore/8.2.0`` -``6.2.6`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` -``6.2.9`` | | ``GCCcore/10.2.0`` -``6.2.9`` | | ``GCCcore/11.3.0`` +version | toolchain +--------|---------- +``6.2.9`` | ``GCCcore/10.2.0`` +``6.2.9`` | ``GCCcore/11.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/buildenv.md b/docs/version-specific/supported-software/b/buildenv.md index 908b507c10..03a7b42a4f 100644 --- a/docs/version-specific/supported-software/b/buildenv.md +++ b/docs/version-specific/supported-software/b/buildenv.md @@ -10,10 +10,6 @@ This module sets a group of environment variables for compilers, linkers, maths version | versionsuffix | toolchain --------|---------------|---------- -``default`` | | ``foss/2017b`` -``default`` | | ``foss/2018b`` -``default`` | | ``foss/2019b`` -``default`` | | ``foss/2020a`` ``default`` | | ``foss/2020b`` ``default`` | ``-CUDA-11.3.1`` | ``foss/2021a`` ``default`` | | ``foss/2021a`` @@ -25,14 +21,11 @@ version | versionsuffix | toolchain ``default`` | | ``foss/2022b`` ``default`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``default`` | | ``foss/2023a`` +``default`` | ``-CUDA-12.4.0`` | ``foss/2023b`` ``default`` | | ``foss/2023b`` -``default`` | | ``fosscuda/2019b`` -``default`` | | ``fosscuda/2020a`` +``default`` | ``-CUDA-12.6.0`` | ``foss/2024a`` +``default`` | | ``foss/2024a`` ``default`` | | ``fosscuda/2020b`` -``default`` | | ``intel/2016b`` -``default`` | | ``intel/2017a`` -``default`` | | ``intel/2019b`` -``default`` | | ``intel/2020a`` ``default`` | | ``intel/2020b`` ``default`` | | ``intel/2021a`` ``default`` | | ``intel/2021b`` @@ -40,8 +33,7 @@ version | versionsuffix | toolchain ``default`` | | ``intel/2022b`` ``default`` | | ``intel/2023a`` ``default`` | | ``intel/2023b`` -``default`` | | ``intelcuda/2019b`` -``default`` | | ``intelcuda/2020a`` +``default`` | | ``intel/2024a`` ``default`` | | ``intelcuda/2020b`` ``default`` | | ``nvompi/2022.07`` diff --git a/docs/version-specific/supported-software/b/bwa-mem2.md b/docs/version-specific/supported-software/b/bwa-mem2.md index 0bb79c56ff..51ccac139c 100644 --- a/docs/version-specific/supported-software/b/bwa-mem2.md +++ b/docs/version-specific/supported-software/b/bwa-mem2.md @@ -10,6 +10,8 @@ The tool bwa-mem2 is the next version of the bwa-mem algorithm in bwa. It produc version | toolchain --------|---------- +``2.2.1`` | ``GCC/11.2.0`` +``2.2.1`` | ``GCC/13.3.0`` ``2.2.1`` | ``intel-compilers/2023.1.0`` diff --git a/docs/version-specific/supported-software/b/bwa-meth.md b/docs/version-specific/supported-software/b/bwa-meth.md index d367ec8afe..11566ba374 100644 --- a/docs/version-specific/supported-software/b/bwa-meth.md +++ b/docs/version-specific/supported-software/b/bwa-meth.md @@ -10,8 +10,6 @@ Fast and accurante alignment of BS-Seq reads. version | toolchain --------|---------- -``0.2.2`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``0.2.2`` | ``iccifort/2019.5.281`` ``0.2.6`` | ``GCC/11.3.0`` diff --git a/docs/version-specific/supported-software/b/bwakit.md b/docs/version-specific/supported-software/b/bwakit.md deleted file mode 100644 index c3b73dcbcb..0000000000 --- a/docs/version-specific/supported-software/b/bwakit.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# bwakit - -Bwakit is a self-consistent installation-free package of scripts and precompiled binaries, providing an end-to-end solution to read mapping. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.7.15`` | ``_x64-linux`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/bwidget.md b/docs/version-specific/supported-software/b/bwidget.md index 5079f2667b..a0c3e210cf 100644 --- a/docs/version-specific/supported-software/b/bwidget.md +++ b/docs/version-specific/supported-software/b/bwidget.md @@ -10,10 +10,8 @@ The BWidget Toolkit is a high-level Widget Set for Tcl/Tk built using native Tcl version | toolchain --------|---------- -``1.9.13`` | ``GCCcore/8.2.0`` +``1.10.1`` | ``GCCcore/13.3.0`` ``1.9.14`` | ``GCCcore/10.2.0`` -``1.9.14`` | ``GCCcore/8.3.0`` -``1.9.14`` | ``GCCcore/9.3.0`` ``1.9.15`` | ``GCCcore/11.2.0`` ``1.9.15`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/b/bx-python.md b/docs/version-specific/supported-software/b/bx-python.md index 7175bb54e9..c2cb240d2e 100644 --- a/docs/version-specific/supported-software/b/bx-python.md +++ b/docs/version-specific/supported-software/b/bx-python.md @@ -8,19 +8,12 @@ The bx-python project is a Python library and associated set of scripts to allow *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.0`` | | ``foss/2023a`` -``0.7.4`` | ``-Python-2.7.12`` | ``foss/2016b`` -``0.7.4`` | ``-Python-2.7.13`` | ``intel/2017a`` -``0.8.1`` | ``-Python-2.7.14`` | ``intel/2018a`` -``0.8.11`` | | ``foss/2021a`` -``0.8.13`` | | ``foss/2021b`` -``0.8.2`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.8.4`` | | ``foss/2019a`` -``0.8.8`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.8.9`` | ``-Python-3.8.2`` | ``foss/2020a`` -``0.9.0`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``0.10.0`` | ``foss/2023a`` +``0.8.11`` | ``foss/2021a`` +``0.8.13`` | ``foss/2021b`` +``0.9.0`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/byacc.md b/docs/version-specific/supported-software/b/byacc.md index 689bd55629..ee3f54a8a7 100644 --- a/docs/version-specific/supported-software/b/byacc.md +++ b/docs/version-specific/supported-software/b/byacc.md @@ -11,10 +11,6 @@ Berkeley Yacc (byacc) is generally conceded to be the best yacc variant availabl version | toolchain --------|---------- ``2.0.20240109`` | ``GCCcore/13.3.0`` -``20160324`` | ``intel/2016a`` -``20160606`` | ``foss/2016b`` -``20160606`` | ``intel/2016b`` -``20170709`` | ``GCCcore/6.4.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/byobu.md b/docs/version-specific/supported-software/b/byobu.md deleted file mode 100644 index 7f6cd602df..0000000000 --- a/docs/version-specific/supported-software/b/byobu.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# byobu - -Byobu is an elegant enhancement of the otherwise functional, plain, practical GNU Screen. Byobu includes an enhanced profile, configuration utilities, and system status notifications for the GNU screen window manager as well as the Tmux terminal multiplexer - -*homepage*: - -version | toolchain ---------|---------- -``5.133`` | ``GCC/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/bzip2.md b/docs/version-specific/supported-software/b/bzip2.md index 194fd254ee..02edec3295 100644 --- a/docs/version-specific/supported-software/b/bzip2.md +++ b/docs/version-specific/supported-software/b/bzip2.md @@ -4,37 +4,12 @@ search: --- # bzip2 -bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression. +bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression. *homepage*: version | toolchain --------|---------- -``1.0.6`` | ``GCC/4.8.1`` -``1.0.6`` | ``GCC/4.8.2`` -``1.0.6`` | ``GCC/4.8.4`` -``1.0.6`` | ``GCC/4.9.2`` -``1.0.6`` | ``GCC/4.9.3-2.25`` -``1.0.6`` | ``GCC/5.4.0-2.26`` -``1.0.6`` | ``GCCcore/4.9.3`` -``1.0.6`` | ``GCCcore/5.4.0`` -``1.0.6`` | ``GCCcore/6.3.0`` -``1.0.6`` | ``GCCcore/6.4.0`` -``1.0.6`` | ``GCCcore/7.2.0`` -``1.0.6`` | ``GCCcore/7.3.0`` -``1.0.6`` | ``GCCcore/8.2.0`` -``1.0.6`` | ``GNU/4.9.3-2.25`` -``1.0.6`` | ``foss/2016.04`` -``1.0.6`` | ``foss/2016a`` -``1.0.6`` | ``foss/2016b`` -``1.0.6`` | ``gimkl/2.11.5`` -``1.0.6`` | ``gimkl/2017a`` -``1.0.6`` | ``intel/2016.02-GCC-4.9`` -``1.0.6`` | ``intel/2016a`` -``1.0.6`` | ``intel/2016b`` -``1.0.6`` | ``iomkl/2016.07`` -``1.0.6`` | ``iomkl/2016.09-GCC-4.9.3-2.25`` -``1.0.6`` | ``system`` ``1.0.8`` | ``GCCcore/10.2.0`` ``1.0.8`` | ``GCCcore/10.3.0`` ``1.0.8`` | ``GCCcore/11.2.0`` @@ -44,8 +19,7 @@ version | toolchain ``1.0.8`` | ``GCCcore/13.1.0`` ``1.0.8`` | ``GCCcore/13.2.0`` ``1.0.8`` | ``GCCcore/13.3.0`` -``1.0.8`` | ``GCCcore/8.3.0`` -``1.0.8`` | ``GCCcore/9.3.0`` +``1.0.8`` | ``GCCcore/14.2.0`` ``1.0.8`` | ``system`` diff --git a/docs/version-specific/supported-software/b/index.md b/docs/version-specific/supported-software/b/index.md index a9e34eab2b..9bab0f1e1a 100644 --- a/docs/version-specific/supported-software/b/index.md +++ b/docs/version-specific/supported-software/b/index.md @@ -13,42 +13,32 @@ search: * [babl](babl.md) * [Bader](Bader.md) * [BAGEL](BAGEL.md) + * [bakta](bakta.md) * [BAli-Phy](BAli-Phy.md) * [bam-readcount](bam-readcount.md) * [Bambi](Bambi.md) * [bamFilters](bamFilters.md) * [BAMM](BAMM.md) - * [BAMSurgeon](BAMSurgeon.md) * [bamtofastq](bamtofastq.md) * [BamTools](BamTools.md) - * [BamUtil](BamUtil.md) * [Bandage](Bandage.md) * [barrnap](barrnap.md) * [basemap](basemap.md) * [bases2fastq](bases2fastq.md) - * [Bash](Bash.md) * [bashplotlib](bashplotlib.md) - * [bat](bat.md) * [batchgenerators](batchgenerators.md) - * [BatMeth2](BatMeth2.md) - * [BayesAss](BayesAss.md) * [BayesAss3-SNPs](BayesAss3-SNPs.md) - * [BayeScan](BayeScan.md) - * [BayeScEnv](BayeScEnv.md) * [bayesian-optimization](bayesian-optimization.md) * [BayesOpt](BayesOpt.md) * [BayesPrism](BayesPrism.md) * [BayesTraits](BayesTraits.md) + * [Baysor](Baysor.md) * [Bazel](Bazel.md) - * [bbcp](bbcp.md) * [bbFTP](bbFTP.md) * [BBMap](BBMap.md) - * [bc](bc.md) - * [BCALM](BCALM.md) * [bcbio-gff](bcbio-gff.md) * [BCEL](BCEL.md) * [BCFtools](BCFtools.md) - * [bcgTree](bcgTree.md) * [bcl-convert](bcl-convert.md) * [bcl2fastq2](bcl2fastq2.md) * [bcolz](bcolz.md) @@ -61,49 +51,35 @@ search: * [BEDOPS](BEDOPS.md) * [BEDTools](BEDTools.md) * [BEEF](BEEF.md) - * [behave](behave.md) * [bench](bench.md) * [BerkeleyGW](BerkeleyGW.md) - * [BFAST](BFAST.md) - * [BFC](BFC.md) * [BGC-Bayesian-genomic-clines](BGC-Bayesian-genomic-clines.md) * [BgeeCall](BgeeCall.md) * [BgeeDB](BgeeDB.md) * [bgen](bgen.md) * [BGEN-enkre](BGEN-enkre.md) - * [bgen-reader](bgen-reader.md) * [BiasAdjustCXX](BiasAdjustCXX.md) - * [bibtexparser](bibtexparser.md) * [BiG-SCAPE](BiG-SCAPE.md) * [BigDFT](BigDFT.md) - * [BinSanity](BinSanity.md) + * [bin2cell](bin2cell.md) + * [BindCraft](BindCraft.md) * [binutils](binutils.md) * [Bio-DB-HTS](Bio-DB-HTS.md) - * [Bio-EUtilities](Bio-EUtilities.md) * [Bio-FeatureIO](Bio-FeatureIO.md) - * [Bio-SamTools](Bio-SamTools.md) * [Bio-SearchIO-hmmer](Bio-SearchIO-hmmer.md) * [bioawk](bioawk.md) * [biobakery-workflows](biobakery-workflows.md) * [biobambam2](biobambam2.md) * [biogeme](biogeme.md) * [biom-format](biom-format.md) - * [biomart-perl](biomart-perl.md) * [BioPerl](BioPerl.md) - * [BioPP](BioPP.md) * [Biopython](Biopython.md) - * [BioServices](BioServices.md) * [Biotite](Biotite.md) - * [BirdNET](BirdNET.md) - * [biscuit](biscuit.md) * [Bismark](Bismark.md) * [Bison](Bison.md) - * [bitarray](bitarray.md) * [bitsandbytes](bitsandbytes.md) * [bitshuffle](bitshuffle.md) - * [BLACS](BLACS.md) - * [BLASR](BLASR.md) - * [blasr_libcpp](blasr_libcpp.md) + * [black](black.md) * [BLAST](BLAST.md) * [BLAST+](BLAST+.md) * [BLAT](BLAT.md) @@ -111,20 +87,15 @@ search: * [BLIS](BLIS.md) * [bliss](bliss.md) * [Blitz++](Blitz++.md) - * [BlobTools](BlobTools.md) * [Block](Block.md) * [Blosc](Blosc.md) * [Blosc2](Blosc2.md) * [BLT](BLT.md) * [bmtagger](bmtagger.md) * [BMTK](BMTK.md) - * [bnpy](bnpy.md) - * [BOINC](BOINC.md) * [bokeh](bokeh.md) - * [BoltzTraP](BoltzTraP.md) * [BoltzTraP2](BoltzTraP2.md) * [Bonito](Bonito.md) - * [Bonmin](Bonmin.md) * [Bonnie++](Bonnie++.md) * [Boost](Boost.md) * [Boost.MPI](Boost.MPI.md) @@ -136,41 +107,30 @@ search: * [Bottleneck](Bottleneck.md) * [Bowtie](Bowtie.md) * [Bowtie2](Bowtie2.md) - * [Bpipe](Bpipe.md) * [bpp](bpp.md) * [bpytop](bpytop.md) * [Bracken](Bracken.md) * [Braindecode](Braindecode.md) * [BRAKER](BRAKER.md) - * [BreakDancer](BreakDancer.md) * [breseq](breseq.md) * [BRiAl](BRiAl.md) * [Brotli](Brotli.md) * [Brotli-python](Brotli-python.md) * [Brunsli](Brunsli.md) * [bsddb3](bsddb3.md) - * [BSMAPz](BSMAPz.md) - * [Bsoft](Bsoft.md) - * [BSseeker2](BSseeker2.md) * [btllib](btllib.md) * [BuDDy](BuDDy.md) - * [BUFRLIB](BUFRLIB.md) * [build](build.md) * [buildenv](buildenv.md) * [buildingspy](buildingspy.md) - * [Bullet](Bullet.md) * [BUSCO](BUSCO.md) * [BUStools](BUStools.md) * [BWA](BWA.md) * [bwa-mem2](bwa-mem2.md) * [bwa-meth](bwa-meth.md) - * [bwakit](bwakit.md) * [bwidget](bwidget.md) - * [BWISE](BWISE.md) * [bx-python](bx-python.md) - * [BXH_XCEDE_TOOLS](BXH_XCEDE_TOOLS.md) * [byacc](byacc.md) - * [byobu](byobu.md) * [bzip2](bzip2.md) diff --git a/docs/version-specific/supported-software/c/CAP3.md b/docs/version-specific/supported-software/c/CAP3.md deleted file mode 100644 index 8c93ceef6b..0000000000 --- a/docs/version-specific/supported-software/c/CAP3.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CAP3 - -CAP3 assembly program - -*homepage*: - -version | toolchain ---------|---------- -``20071221-intel-x86`` | ``system`` -``20071221-intel-x86_64`` | ``system`` -``20071221-opteron`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CASTEP.md b/docs/version-specific/supported-software/c/CASTEP.md index caad7400fb..59ae292095 100644 --- a/docs/version-specific/supported-software/c/CASTEP.md +++ b/docs/version-specific/supported-software/c/CASTEP.md @@ -4,19 +4,15 @@ search: --- # CASTEP -CASTEP is an electronic structure materials modelling code based on density functional theory (DFT), with functionality including geometry optimization molecular dynamics, phonons, NMR chemical shifts and much more. +CASTEP is an electronic structure materials modelling code based on density functional theory (DFT), with functionality including geometry optimization molecular dynamics, phonons, NMR chemical shifts and much more. *homepage*: version | toolchain --------|---------- -``21.1.1`` | ``CrayCCE/19.06`` -``21.1.1`` | ``CrayGNU/19.06`` -``21.1.1`` | ``foss/2019b`` -``21.1.1`` | ``intel/2019b`` -``21.1.1`` | ``iomkl/2019b`` ``22.11`` | ``foss/2022a`` ``23.1`` | ``foss/2023a`` +``24.1`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CAVIAR.md b/docs/version-specific/supported-software/c/CAVIAR.md deleted file mode 100644 index 3e22857611..0000000000 --- a/docs/version-specific/supported-software/c/CAVIAR.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CAVIAR - -CAusal Variants Identication in Associated Regions. A statistical framework that quantifies the probability of each variant to be causal while allowing an arbitrary number of causal variants. - -*homepage*: - -version | toolchain ---------|---------- -``2.2-20190419`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CBLAS.md b/docs/version-specific/supported-software/c/CBLAS.md deleted file mode 100644 index 3a98057cfb..0000000000 --- a/docs/version-specific/supported-software/c/CBLAS.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CBLAS - -C interface to the BLAS - -*homepage*: - -version | toolchain ---------|---------- -``20110120`` | ``foss/2016b`` -``20110120`` | ``intel/2019b`` -``20110120`` | ``intel/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CCL.md b/docs/version-specific/supported-software/c/CCL.md index 48f195a332..abb13c7405 100644 --- a/docs/version-specific/supported-software/c/CCL.md +++ b/docs/version-specific/supported-software/c/CCL.md @@ -10,8 +10,6 @@ Clozure CL (often called CCL for short) is a free Common Lisp implementation wi version | toolchain --------|---------- -``1.11.5`` | ``system`` -``1.12`` | ``GCCcore/9.3.0`` ``1.12.1`` | ``GCCcore/10.3.0`` ``1.12.2`` | ``GCCcore/11.3.0`` ``1.12.2`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/c/CCfits.md b/docs/version-specific/supported-software/c/CCfits.md deleted file mode 100644 index 26f87604c4..0000000000 --- a/docs/version-specific/supported-software/c/CCfits.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CCfits - -CCfits is an object oriented interface to the cfitsio library. It is designed to make the capabilities of cfitsio available to programmers working in C++. - -*homepage*: - -version | toolchain ---------|---------- -``2.5`` | ``GCCcore/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CD-HIT.md b/docs/version-specific/supported-software/c/CD-HIT.md index 6b722e59d8..98e5c47b79 100644 --- a/docs/version-specific/supported-software/c/CD-HIT.md +++ b/docs/version-specific/supported-software/c/CD-HIT.md @@ -4,27 +4,19 @@ search: --- # CD-HIT -CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences. +CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.6.4`` | ``-2015-0603`` | ``GNU/4.9.3-2.25`` -``4.6.6`` | | ``foss/2016b`` -``4.6.8`` | | ``foss/2018b`` -``4.6.8`` | | ``intel/2017a`` -``4.6.8`` | | ``intel/2018a`` -``4.8.1`` | | ``GCC/10.2.0`` -``4.8.1`` | | ``GCC/10.3.0`` -``4.8.1`` | | ``GCC/11.2.0`` -``4.8.1`` | | ``GCC/11.3.0`` -``4.8.1`` | | ``GCC/12.2.0`` -``4.8.1`` | | ``GCC/12.3.0`` -``4.8.1`` | | ``GCC/8.3.0`` -``4.8.1`` | | ``GCC/9.3.0`` -``4.8.1`` | | ``foss/2018b`` -``4.8.1`` | | ``iccifort/2019.5.281`` +version | toolchain +--------|---------- +``4.8.1`` | ``GCC/10.2.0`` +``4.8.1`` | ``GCC/10.3.0`` +``4.8.1`` | ``GCC/11.2.0`` +``4.8.1`` | ``GCC/11.3.0`` +``4.8.1`` | ``GCC/12.2.0`` +``4.8.1`` | ``GCC/12.3.0`` +``4.8.1`` | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CDAT.md b/docs/version-specific/supported-software/c/CDAT.md deleted file mode 100644 index aa25e9d5cd..0000000000 --- a/docs/version-specific/supported-software/c/CDAT.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CDAT - -CDAT is a powerful and complete front-end to a rich set of visual-data exploration and analysis capabilities well suited for data analysis problems. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``8.2.1`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CDBtools.md b/docs/version-specific/supported-software/c/CDBtools.md index 593575edeb..64014484aa 100644 --- a/docs/version-specific/supported-software/c/CDBtools.md +++ b/docs/version-specific/supported-software/c/CDBtools.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``0.99`` | ``GCC/10.2.0`` ``0.99`` | ``GCC/11.3.0`` +``0.99`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CDO.md b/docs/version-specific/supported-software/c/CDO.md index 8e4ae13cde..31e30d8a98 100644 --- a/docs/version-specific/supported-software/c/CDO.md +++ b/docs/version-specific/supported-software/c/CDO.md @@ -10,24 +10,16 @@ CDO is a collection of command line Operators to manipulate and analyse Climate version | toolchain --------|---------- -``1.7.2`` | ``intel/2016b`` -``1.8.1`` | ``intel/2017a`` -``1.9.1`` | ``intel/2017b`` -``1.9.10`` | ``gompi/2019b`` ``1.9.10`` | ``gompi/2020b`` ``1.9.10`` | ``gompi/2021a`` ``1.9.10`` | ``iimpi/2021b`` -``1.9.2`` | ``intel/2017b`` -``1.9.5`` | ``intel/2018a`` -``1.9.5`` | ``intel/2018b`` -``1.9.5`` | ``iomkl/2018b`` -``1.9.8`` | ``intel/2019b`` ``2.0.5`` | ``gompi/2021b`` ``2.0.6`` | ``gompi/2022a`` ``2.1.1`` | ``gompi/2021a`` ``2.2.2`` | ``gompi/2023a`` ``2.2.2`` | ``gompi/2023b`` ``2.3.0`` | ``iimpi/2022a`` +``2.4.4`` | ``gompi/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CENSO.md b/docs/version-specific/supported-software/c/CENSO.md index c1962b06b6..1ce2be2a2f 100644 --- a/docs/version-specific/supported-software/c/CENSO.md +++ b/docs/version-specific/supported-software/c/CENSO.md @@ -4,7 +4,7 @@ search: --- # CENSO -Commandline Energetic SOrting (CENSO) is a sorting algorithm for efficient evaluation of Structure Ensembles (SE). The input ensemble (or single structure) originating from a CREST[SQM/FF] run can be ranked by free energy at DFT level and/or geometries can be optimized using DFT. +Commandline Energetic SOrting (CENSO) is a sorting algorithm for efficient evaluation of Structure Ensembles (SE). The input ensemble (or single structure) originating from a CREST[SQM/FF] run can be ranked by free energy at DFT level and/or geometries can be optimized using DFT. *homepage*: diff --git a/docs/version-specific/supported-software/c/CESM-deps.md b/docs/version-specific/supported-software/c/CESM-deps.md index d729956192..98b7f4e4c8 100644 --- a/docs/version-specific/supported-software/c/CESM-deps.md +++ b/docs/version-specific/supported-software/c/CESM-deps.md @@ -4,18 +4,15 @@ search: --- # CESM-deps -CESM is a fully-coupled, community, global climate model that provides state-of-the-art computer simulations of the Earth's past, present, and future climate states. +CESM is a fully-coupled, community, global climate model that provides state-of-the-art computer simulations of the Earth's past, present, and future climate states. *homepage*: version | toolchain --------|---------- -``2`` | ``foss/2018b`` ``2`` | ``foss/2021b`` ``2`` | ``foss/2022a`` ``2`` | ``foss/2023a`` -``2`` | ``intel/2018b`` -``2`` | ``iomkl/2018b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CFDEMcoupling.md b/docs/version-specific/supported-software/c/CFDEMcoupling.md deleted file mode 100644 index b90dc95677..0000000000 --- a/docs/version-specific/supported-software/c/CFDEMcoupling.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CFDEMcoupling - -CFDEMcoupling is an open source CFD-DEM engine. It provides the possibility to couple the DEM engine LIGGGHTS to a CFD framework. - -*homepage*: - -version | toolchain ---------|---------- -``3.8.0`` | ``foss/2018a`` -``3.8.0`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CFITSIO.md b/docs/version-specific/supported-software/c/CFITSIO.md index af8dd4b7ee..f2f7e621bc 100644 --- a/docs/version-specific/supported-software/c/CFITSIO.md +++ b/docs/version-specific/supported-software/c/CFITSIO.md @@ -6,22 +6,10 @@ search: CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format. -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.38`` | ``foss/2016a`` -``3.38`` | ``intel/2016a`` -``3.41`` | ``GCCcore/5.4.0`` -``3.41`` | ``GCCcore/6.3.0`` -``3.41`` | ``intel/2016b`` -``3.42`` | ``GCCcore/6.4.0`` -``3.42`` | ``intel/2017b`` -``3.45`` | ``GCCcore/7.3.0`` -``3.45`` | ``intel/2018b`` -``3.47`` | ``GCCcore/8.2.0`` -``3.47`` | ``GCCcore/8.3.0`` -``3.48`` | ``GCCcore/9.3.0`` ``3.49`` | ``GCCcore/10.2.0`` ``3.49`` | ``GCCcore/10.3.0`` ``3.49`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/c/CGAL.md b/docs/version-specific/supported-software/c/CGAL.md index 5888dc8579..853d5b9307 100644 --- a/docs/version-specific/supported-software/c/CGAL.md +++ b/docs/version-specific/supported-software/c/CGAL.md @@ -6,45 +6,20 @@ search: The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.11`` | ``-Python-2.7.14`` | ``foss/2017b`` -``4.11`` | ``-Python-3.6.3`` | ``foss/2017b`` -``4.11`` | ``-Python-2.7.13`` | ``intel/2017a`` -``4.11`` | ``-Python-2.7.14`` | ``intel/2017b`` -``4.11`` | ``-Python-3.6.3`` | ``intel/2017b`` -``4.11.1`` | ``-Python-2.7.14`` | ``foss/2018a`` -``4.11.1`` | ``-Python-3.6.4`` | ``foss/2018a`` -``4.11.1`` | ``-Python-2.7.15`` | ``foss/2018b`` -``4.11.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``4.11.1`` | ``-Python-2.7.14`` | ``intel/2018a`` -``4.14`` | ``-Python-3.7.2`` | ``foss/2019a`` -``4.14`` | ``-Python-3.7.2`` | ``intel/2019a`` -``4.14.1`` | ``-Python-2.7.16`` | ``foss/2019b`` -``4.14.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``4.14.1`` | ``-Python-3.7.4`` | ``intel/2019b`` -``4.14.3`` | ``-Python-3.8.2`` | ``gompi/2020a`` -``4.14.3`` | | ``gompi/2021a`` -``4.14.3`` | | ``gompi/2021b`` -``4.14.3`` | | ``gompi/2022a`` -``4.14.3`` | ``-Python-3.8.2`` | ``iimpi/2020a`` -``4.14.3`` | | ``iimpi/2021a`` -``4.8`` | ``-Python-2.7.11`` | ``foss/2016a`` -``4.8`` | ``-Python-2.7.11`` | ``intel/2016a`` -``4.8.1`` | ``-Python-2.7.12`` | ``foss/2016b`` -``4.8.1`` | | ``foss/2016b`` -``4.8.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``4.8.1`` | | ``intel/2016b`` -``4.9`` | ``-Python-2.7.12`` | ``intel/2016b`` -``4.9`` | ``-Python-2.7.13`` | ``intel/2017a`` -``5.2`` | | ``gompi/2020b`` -``5.4`` | | ``GCCcore/12.3.0`` -``5.5.2`` | | ``GCCcore/12.2.0`` -``5.6`` | | ``GCCcore/12.3.0`` -``5.6.1`` | | ``GCCcore/13.2.0`` -``5.6.1`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``4.14.3`` | ``gompi/2021a`` +``4.14.3`` | ``gompi/2021b`` +``4.14.3`` | ``gompi/2022a`` +``4.14.3`` | ``iimpi/2021a`` +``5.2`` | ``gompi/2020b`` +``5.4`` | ``GCCcore/12.3.0`` +``5.5.2`` | ``GCCcore/12.2.0`` +``5.6`` | ``GCCcore/12.3.0`` +``5.6.1`` | ``GCCcore/13.2.0`` +``5.6.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CGNS.md b/docs/version-specific/supported-software/c/CGNS.md deleted file mode 100644 index eb52f3db8f..0000000000 --- a/docs/version-specific/supported-software/c/CGNS.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CGNS - -The CGNS system is designed to facilitate the exchange of data between sites and applications, and to help stabilize the archiving of aerodynamic data. - -*homepage*: - -version | toolchain ---------|---------- -``3.3.1`` | ``foss/2016b`` -``4.1.0`` | ``intelcuda/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CGmapTools.md b/docs/version-specific/supported-software/c/CGmapTools.md deleted file mode 100644 index 79c9425fd6..0000000000 --- a/docs/version-specific/supported-software/c/CGmapTools.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CGmapTools - -Command-line Toolset for Bisulfite Sequencing Data Analysis - -*homepage*: - -version | toolchain ---------|---------- -``0.1.2`` | ``intel/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CHASE.md b/docs/version-specific/supported-software/c/CHASE.md deleted file mode 100644 index e1d6edebca..0000000000 --- a/docs/version-specific/supported-software/c/CHASE.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CHASE - -Case-control HAplotype Sharing analyses. Haplotype sharing analyses for genome-wide association studies. - -*homepage*: - -version | toolchain ---------|---------- -``20130626`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CHERAB.md b/docs/version-specific/supported-software/c/CHERAB.md index a10510b64f..5948368ae8 100644 --- a/docs/version-specific/supported-software/c/CHERAB.md +++ b/docs/version-specific/supported-software/c/CHERAB.md @@ -8,13 +8,12 @@ CHERAB is a python library for forward modelling diagnostics based on spectrosc *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``1.3.0`` | | ``foss/2020b`` -``1.3.0`` | | ``intel/2020b`` -``1.4.0`` | | ``foss/2020b`` -``1.4.0`` | | ``intel/2020b`` +version | toolchain +--------|---------- +``1.3.0`` | ``foss/2020b`` +``1.3.0`` | ``intel/2020b`` +``1.4.0`` | ``foss/2020b`` +``1.4.0`` | ``intel/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CIF2Cell.md b/docs/version-specific/supported-software/c/CIF2Cell.md deleted file mode 100644 index 18b9d0b0df..0000000000 --- a/docs/version-specific/supported-software/c/CIF2Cell.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CIF2Cell - -CIF2Cell is a tool to generate the geometrical setup for various electronic structure codes from a CIF (Crystallographic Information Framework) file. The program currently supports output for a number of popular electronic structure programs, including ABINIT, ASE, CASTEP, CP2K, CPMD, CRYSTAL09, Elk, EMTO, Exciting, Fleur, FHI-aims, Hutsepot, MOPAC, Quantum Espresso, RSPt, Siesta, SPR-KKR, VASP. Also exports some related formats like .coo, .cfg and .xyz-files. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.10`` | ``-Python-2.7.16`` | ``GCCcore/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CIRCE.md b/docs/version-specific/supported-software/c/CIRCE.md new file mode 100644 index 0000000000..fce37c23c6 --- /dev/null +++ b/docs/version-specific/supported-software/c/CIRCE.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# CIRCE + +This repo contains a python package for inferring co-accessibility networks from single-cell ATAC-seq data, using skggm for the graphical lasso and scanpy for data processing. + +*homepage*: + +version | toolchain +--------|---------- +``0.3.4`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/c/CIRCexplorer.md b/docs/version-specific/supported-software/c/CIRCexplorer.md deleted file mode 100644 index 518a9e4667..0000000000 --- a/docs/version-specific/supported-software/c/CIRCexplorer.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CIRCexplorer - -CIRCexplorer2 is a comprehensive and integrative circular RNA analysis toolset. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.10`` | ``-Python-2.7.14`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CIRCexplorer2.md b/docs/version-specific/supported-software/c/CIRCexplorer2.md index 8dcf5f6d58..ed2479b43a 100644 --- a/docs/version-specific/supported-software/c/CIRCexplorer2.md +++ b/docs/version-specific/supported-software/c/CIRCexplorer2.md @@ -6,12 +6,10 @@ search: CIRCexplorer2 is a comprehensive and integrative circular RNA analysis toolset. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2.3.2`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.3.3`` | ``-Python-2.7.14`` | ``intel/2018a`` ``2.3.8`` | ``-Python-2.7.18`` | ``foss/2020b`` ``2.3.8`` | ``-Python-2.7.18`` | ``foss/2021b`` diff --git a/docs/version-specific/supported-software/c/CIRI.md b/docs/version-specific/supported-software/c/CIRI.md deleted file mode 100644 index c71755ed9e..0000000000 --- a/docs/version-specific/supported-software/c/CIRI.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CIRI - -CircRNA Identifier. A de novo circular RNA identification tool - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0.6`` | ``-Perl-5.26.0`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CITE-seq-Count.md b/docs/version-specific/supported-software/c/CITE-seq-Count.md deleted file mode 100644 index 150685ace6..0000000000 --- a/docs/version-specific/supported-software/c/CITE-seq-Count.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CITE-seq-Count - -A python package that allows to count antibody TAGS from a CITE-seq and/or cell hashing experiment. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.4.3`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.4.3`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CLAPACK.md b/docs/version-specific/supported-software/c/CLAPACK.md deleted file mode 100644 index 1826f980eb..0000000000 --- a/docs/version-specific/supported-software/c/CLAPACK.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CLAPACK - -C version of LAPACK - -*homepage*: - -version | toolchain ---------|---------- -``3.2.1`` | ``GCC/6.4.0-2.28`` -``3.2.1`` | ``iccifort/2017.4.196-GCC-6.4.0-2.28`` -``3.2.1`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CLHEP.md b/docs/version-specific/supported-software/c/CLHEP.md index c4a7e19d09..98c8c53e97 100644 --- a/docs/version-specific/supported-software/c/CLHEP.md +++ b/docs/version-specific/supported-software/c/CLHEP.md @@ -6,23 +6,10 @@ search: The CLHEP project is intended to be a set of HEP-specific foundation and utility classes such as random generators, physics vectors, geometry and linear algebra. CLHEP is structured in a set of packages independent of any external package. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.1.1.0`` | ``intel/2016a`` -``2.1.3.1`` | ``intel/2016a`` -``2.2.0.8`` | ``intel/2016a`` -``2.3.1.1`` | ``intel/2016a`` -``2.3.4.3`` | ``foss/2017b`` -``2.3.4.3`` | ``intel/2017b`` -``2.4.0.0`` | ``intel/2017b`` -``2.4.1.0`` | ``foss/2017b`` -``2.4.1.0`` | ``foss/2018b`` -``2.4.1.0`` | ``intel/2017b`` -``2.4.1.0`` | ``intel/2018b`` -``2.4.1.3`` | ``foss/2019b`` -``2.4.1.3`` | ``foss/2020a`` ``2.4.4.0`` | ``GCC/10.2.0`` ``2.4.4.0`` | ``GCC/11.2.0`` ``2.4.5.1`` | ``GCC/11.2.0`` diff --git a/docs/version-specific/supported-software/c/CLISP.md b/docs/version-specific/supported-software/c/CLISP.md deleted file mode 100644 index 38a437bf5a..0000000000 --- a/docs/version-specific/supported-software/c/CLISP.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CLISP - -Common Lisp is a high-level, general-purpose, object-oriented, dynamic, functional programming language. - -*homepage*: - -version | toolchain ---------|---------- -``2.49`` | ``GCCcore/6.4.0`` -``2.49`` | ``GCCcore/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CLooG.md b/docs/version-specific/supported-software/c/CLooG.md deleted file mode 100644 index 82563a1da3..0000000000 --- a/docs/version-specific/supported-software/c/CLooG.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CLooG - -CLooG is a free software and library to generate code for scanning Z-polyhedra. That is, it finds a code (e.g. in C, FORTRAN...) that reaches each integral point of one or more parameterized polyhedra. CLooG has been originally written to solve the code generation problem for optimizing compilers based on the polytope model. Nevertheless it is used now in various area e.g. to build control automata for high-level synthesis or to find the best polynomial approximation of a function. CLooG may help in any situation where scanning polyhedra matters. While the user has full control on generated code quality, CLooG is designed to avoid control overhead and to produce a very effective code. - -*homepage*: - -version | toolchain ---------|---------- -``0.18.1`` | ``GCC/4.8.2`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CMSeq.md b/docs/version-specific/supported-software/c/CMSeq.md index fb02ca592a..1bb97b6f00 100644 --- a/docs/version-specific/supported-software/c/CMSeq.md +++ b/docs/version-specific/supported-software/c/CMSeq.md @@ -8,10 +8,9 @@ CMSeq is a set of commands to provide an interface to .bam files for coverage an *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.3`` | ``-Python-3.8.2`` | ``foss/2020a`` -``1.0.4`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``1.0.4`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CMake.md b/docs/version-specific/supported-software/c/CMake.md index eb29490223..2d14d45408 100644 --- a/docs/version-specific/supported-software/c/CMake.md +++ b/docs/version-specific/supported-software/c/CMake.md @@ -4,41 +4,14 @@ search: --- # CMake -CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software. +CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software. *homepage*: version | toolchain --------|---------- -``2.8.11`` | ``GCC/4.8.1`` -``2.8.12`` | ``GCC/4.8.1`` -``2.8.12`` | ``GCC/4.8.2`` -``3.0.0`` | ``GCC/4.8.3`` -``3.1.0`` | ``GCC/4.9.2`` -``3.1.3`` | ``GCC/4.9.2`` -``3.1.3`` | ``system`` -``3.10.0`` | ``GCCcore/6.4.0`` -``3.10.1`` | ``GCCcore/6.4.0`` -``3.10.2`` | ``GCCcore/6.4.0`` -``3.10.2`` | ``GCCcore/7.2.0`` -``3.10.3`` | ``GCCcore/6.4.0`` -``3.10.3`` | ``GCCcore/7.2.0`` -``3.11.1`` | ``GCCcore/6.4.0`` -``3.11.4`` | ``GCCcore/6.4.0`` -``3.11.4`` | ``GCCcore/7.3.0`` -``3.11.4`` | ``GCCcore/8.3.0`` -``3.12.1`` | ``GCCcore/6.4.0`` -``3.12.1`` | ``GCCcore/7.2.0`` -``3.12.1`` | ``GCCcore/7.3.0`` -``3.12.1`` | ``system`` -``3.13.3`` | ``GCCcore/8.2.0`` -``3.15.1`` | ``system`` -``3.15.3`` | ``GCCcore/8.3.0`` -``3.16.4`` | ``GCCcore/9.3.0`` ``3.18.4`` | ``GCCcore/10.2.0`` ``3.18.4`` | ``system`` -``3.2.1`` | ``GCC/4.9.2`` -``3.2.1`` | ``GNU/4.9.3-2.25`` ``3.20.1`` | ``GCCcore/10.2.0`` ``3.20.1`` | ``GCCcore/10.3.0`` ``3.21.1`` | ``GCCcore/11.2.0`` @@ -50,51 +23,7 @@ version | toolchain ``3.26.3`` | ``GCCcore/13.1.0`` ``3.27.6`` | ``GCCcore/13.2.0`` ``3.29.3`` | ``GCCcore/13.3.0`` -``3.3.1`` | ``system`` -``3.3.2`` | ``GNU/4.9.3-2.25`` -``3.3.2`` | ``gimkl/2.11.5`` -``3.4.1`` | ``GCC/4.9.2`` -``3.4.1`` | ``GCCcore/4.9.3`` -``3.4.1`` | ``foss/2016a`` -``3.4.1`` | ``intel/2016.02-GCC-4.9`` -``3.4.1`` | ``intel/2016a`` -``3.4.1`` | ``iomkl/2016.07`` -``3.4.1`` | ``iomkl/2016.09-GCC-4.9.3-2.25`` -``3.4.3`` | ``foss/2016a`` -``3.4.3`` | ``foss/2016b`` -``3.4.3`` | ``gimkl/2.11.5`` -``3.4.3`` | ``intel/2016a`` -``3.5.1`` | ``intel/2016a`` -``3.5.2`` | ``GCC/4.9.3-2.25`` -``3.5.2`` | ``foss/2016a`` -``3.5.2`` | ``foss/2016b`` -``3.5.2`` | ``intel/2016a`` -``3.5.2`` | ``intel/2016b`` -``3.5.2`` | ``system`` -``3.6.1`` | ``GCC/5.4.0-2.26`` -``3.6.1`` | ``GCCcore/4.9.3`` -``3.6.1`` | ``foss/2016b`` -``3.6.1`` | ``intel/2016b`` -``3.6.1`` | ``system`` -``3.6.2`` | ``GCCcore/5.4.0`` -``3.6.2`` | ``foss/2016b`` -``3.6.2`` | ``intel/2016b`` -``3.7.1`` | ``GCCcore/5.4.0`` -``3.7.1`` | ``GCCcore/6.2.0`` -``3.7.1`` | ``foss/2016b`` -``3.7.1`` | ``intel/2016b`` -``3.7.2`` | ``GCCcore/6.3.0`` -``3.7.2`` | ``foss/2016b`` -``3.7.2`` | ``intel/2016b`` -``3.8.0`` | ``GCCcore/6.3.0`` -``3.8.1`` | ``GCCcore/6.3.0`` -``3.8.2`` | ``GCCcore/6.3.0`` -``3.9.1`` | ``GCCcore/6.3.0`` -``3.9.1`` | ``GCCcore/6.4.0`` -``3.9.1`` | ``system`` -``3.9.4`` | ``GCCcore/6.4.0`` -``3.9.5`` | ``GCCcore/6.4.0`` -``3.9.6`` | ``system`` +``3.31.3`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CNT-ILP.md b/docs/version-specific/supported-software/c/CNT-ILP.md deleted file mode 100644 index 21050bef30..0000000000 --- a/docs/version-specific/supported-software/c/CNT-ILP.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CNT-ILP - -Integer Linear Program for the Copy-Number Tree Problem - -*homepage*: - -version | toolchain ---------|---------- -``20171031`` | ``GCC/8.2.0-2.31.1`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CNVkit.md b/docs/version-specific/supported-software/c/CNVkit.md index d0783100ef..0f88eadd2f 100644 --- a/docs/version-specific/supported-software/c/CNVkit.md +++ b/docs/version-specific/supported-software/c/CNVkit.md @@ -11,9 +11,6 @@ A command-line toolkit and Python library for detecting copy number variants an version | versionsuffix | toolchain --------|---------------|---------- ``0.9.10`` | ``-R-4.2.2`` | ``foss/2022b`` -``0.9.2`` | ``-Python-2.7.14`` | ``intel/2017b`` -``0.9.3`` | ``-Python-3.6.4`` | ``intel/2018a`` -``0.9.6`` | ``-Python-3.7.2-R-3.6.0`` | ``foss/2019a`` ``0.9.8`` | ``-R-4.0.3`` | ``foss/2020b`` diff --git a/docs/version-specific/supported-software/c/CNVnator.md b/docs/version-specific/supported-software/c/CNVnator.md deleted file mode 100644 index 3a89c3aaff..0000000000 --- a/docs/version-specific/supported-software/c/CNVnator.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CNVnator - -a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads - -*homepage*: - -version | toolchain ---------|---------- -``0.3.3`` | ``foss/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/COAWST-deps.md b/docs/version-specific/supported-software/c/COAWST-deps.md new file mode 100644 index 0000000000..1c90d6f853 --- /dev/null +++ b/docs/version-specific/supported-software/c/COAWST-deps.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# COAWST-deps + +A Coupled-Ocean-Atmosphere-Wave-Sediment Transport Modeling System. COAWST is an open-source tool that combines many sophisticated systems that each provide relative earth-system components necessary to investigate the dynamics of coastal storm impacts. + +*homepage*: + +version | toolchain +--------|---------- +``3.8`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/c/CODEX2.md b/docs/version-specific/supported-software/c/CODEX2.md deleted file mode 100644 index fac7b7f0ae..0000000000 --- a/docs/version-specific/supported-software/c/CODEX2.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CODEX2 - -Full-spectrum copy number variation detection by high-throughput DNA sequencing - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20180227`` | ``-R-3.4.3`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/COLMAP.md b/docs/version-specific/supported-software/c/COLMAP.md new file mode 100644 index 0000000000..6cef7bf298 --- /dev/null +++ b/docs/version-specific/supported-software/c/COLMAP.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# COLMAP + +COLMAP is a general-purpose Structure-from-Motion (SfM) and Multi-View Stereo (MVS) pipeline with a graphical and command-line interface + +*homepage*: + +version | toolchain +--------|---------- +``3.8`` | ``foss/2022b`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/c/COMSOL.md b/docs/version-specific/supported-software/c/COMSOL.md index 5a1449769a..71ab6c55ad 100644 --- a/docs/version-specific/supported-software/c/COMSOL.md +++ b/docs/version-specific/supported-software/c/COMSOL.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``5.4.0.225`` | ``system`` ``6.2.0.290`` | ``system`` +``6.3.0.290`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CONCOCT.md b/docs/version-specific/supported-software/c/CONCOCT.md index f2d923d12d..c885a94c01 100644 --- a/docs/version-specific/supported-software/c/CONCOCT.md +++ b/docs/version-specific/supported-software/c/CONCOCT.md @@ -4,17 +4,14 @@ search: --- # CONCOCT -Clustering cONtigs with COverage and ComposiTion (CONCOCT) is a program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads. +Clustering cONtigs with COverage and ComposiTion (CONCOCT) is a program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.0.0`` | ``-Python-2.7.14`` | ``foss/2017b`` -``1.0.0`` | ``-Python-3.6.3`` | ``foss/2017b`` -``1.0.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.1.0`` | ``-Python-2.7.15`` | ``foss/2019a`` ``1.1.0`` | ``-Python-2.7.18`` | ``foss/2020b`` +``1.1.0`` | ``-Python-2.7.18`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/COSTA.md b/docs/version-specific/supported-software/c/COSTA.md index f614fa85e6..5486ff3f8e 100644 --- a/docs/version-specific/supported-software/c/COSTA.md +++ b/docs/version-specific/supported-software/c/COSTA.md @@ -4,7 +4,7 @@ search: --- # COSTA -OSTA is a communication-optimal, highly-optimised algorithm for data redistribution accross multiple processors, using MPI and OpenMP and offering the possibility to transpose and scale some or all data. +OSTA is a communication-optimal, highly-optimised algorithm for data redistribution accross multiple processors, using MPI and OpenMP and offering the possibility to transpose and scale some or all data. *homepage*: diff --git a/docs/version-specific/supported-software/c/CP2K.md b/docs/version-specific/supported-software/c/CP2K.md index 39475573c0..5d8f795bf2 100644 --- a/docs/version-specific/supported-software/c/CP2K.md +++ b/docs/version-specific/supported-software/c/CP2K.md @@ -13,26 +13,9 @@ version | versionsuffix | toolchain ``2022.1`` | | ``foss/2022a`` ``2023.1`` | | ``foss/2022b`` ``2023.1`` | | ``foss/2023a`` -``3.0`` | | ``intel/2016a`` -``3.0`` | ``-psmp`` | ``intel/2016b`` -``3.0`` | | ``intel/2016b`` -``3.0`` | | ``intel/2017b`` -``3.0`` | | ``intel/2018a`` -``4.1`` | ``-psmp`` | ``foss/2016b`` -``4.1`` | | ``intel/2016b`` -``5.1`` | | ``foss/2018a`` -``5.1`` | | ``foss/2020a`` ``5.1`` | | ``foss/2020b`` -``5.1`` | | ``intel/2017b`` -``5.1`` | | ``intel/2018a`` -``5.1`` | | ``intel/2020a`` -``6.1`` | | ``foss/2019a`` -``6.1`` | | ``intel/2018a`` -``6.1`` | | ``intel/2020a`` -``7.1`` | | ``foss/2020a`` ``7.1`` | ``-psmp`` | ``foss/2020b`` ``7.1`` | | ``foss/2020b`` -``7.1`` | | ``intel/2020a`` ``7.1`` | | ``intel/2020b`` ``8.1`` | | ``foss/2020b`` ``8.2`` | | ``foss/2021a`` diff --git a/docs/version-specific/supported-software/c/CPB.md b/docs/version-specific/supported-software/c/CPB.md deleted file mode 100644 index 38280c9996..0000000000 --- a/docs/version-specific/supported-software/c/CPB.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CPB - -CPB is a novel two-step Pearson correlation based biclustering approach to mine genes that are co-regulated with a given reference gene in order to discover genes that function in a common biological process. In the first step, the algorithm identifies subsets of genes with high correlation, reducing false negatives with a nonparametric filtering scheme. In the second step, biclusters from multiple datasets are used to extract and rank gene correlation information. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``11-4-2011`` | ``-Python-2.7.13`` | ``foss/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CPLEX.md b/docs/version-specific/supported-software/c/CPLEX.md index 7044f8b89e..f04f650fc7 100644 --- a/docs/version-specific/supported-software/c/CPLEX.md +++ b/docs/version-specific/supported-software/c/CPLEX.md @@ -8,12 +8,10 @@ IBM ILOG CPLEX Optimizer's mathematical programming technology enables analytic *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``12.10`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``12.9`` | | ``GCCcore/8.2.0`` -``22.1.1`` | | ``GCCcore/11.2.0`` -``22.1.1`` | | ``system`` +version | toolchain +--------|---------- +``22.1.1`` | ``GCCcore/11.2.0`` +``22.1.1`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CPPE.md b/docs/version-specific/supported-software/c/CPPE.md index 13cee025f0..541ed954cd 100644 --- a/docs/version-specific/supported-software/c/CPPE.md +++ b/docs/version-specific/supported-software/c/CPPE.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``0.3.1`` | ``GCC/11.3.0`` ``0.3.1`` | ``GCC/12.2.0`` +``0.3.1`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CREST.md b/docs/version-specific/supported-software/c/CREST.md index d3a1de62c3..126a3ff039 100644 --- a/docs/version-specific/supported-software/c/CREST.md +++ b/docs/version-specific/supported-software/c/CREST.md @@ -17,6 +17,7 @@ version | toolchain ``2.12`` | ``intel/2022a`` ``3.0.1`` | ``gfbf/2022b`` ``3.0.2`` | ``foss/2023a`` +``3.0.2`` | ``gfbf/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CRF++.md b/docs/version-specific/supported-software/c/CRF++.md deleted file mode 100644 index 4463e70193..0000000000 --- a/docs/version-specific/supported-software/c/CRF++.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CRF++ - -CRF++ is a simple, customizable, and open source implementation of Conditional Random Fields (CRFs) for segmenting/labeling sequential data. CRF++ is designed for generic purpose and will be applied to a variety of NLP tasks, such as Named Entity Recognition, Information Extraction and Text Chunking. - -*homepage*: - -version | toolchain ---------|---------- -``0.58`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``0.58`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CRISPResso2.md b/docs/version-specific/supported-software/c/CRISPResso2.md index 55b7dec268..2e9a0d1f64 100644 --- a/docs/version-specific/supported-software/c/CRISPResso2.md +++ b/docs/version-specific/supported-software/c/CRISPResso2.md @@ -6,13 +6,13 @@ search: CRISPResso2 is a software pipeline designed to enable rapid and intuitive interpretation of genome editing experiments. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2.0.44`` | ``-Python-2.7.16`` | ``foss/2019b`` ``2.1.2`` | ``-Python-2.7.18`` | ``foss/2020b`` ``2.2.1`` | | ``foss/2020b`` +``2.3.1`` | | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CRPropa.md b/docs/version-specific/supported-software/c/CRPropa.md deleted file mode 100644 index b344635d03..0000000000 --- a/docs/version-specific/supported-software/c/CRPropa.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CRPropa - -CRPropa is a publicly available code to study the propagation of ultra high energy nuclei up to iron on their voyage through an extra galactic environment. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.1.5`` | ``-Python-3.7.2`` | ``foss/2019a`` -``3.1.6`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CSB.md b/docs/version-specific/supported-software/c/CSB.md index 51395741c0..ed6dc899c5 100644 --- a/docs/version-specific/supported-software/c/CSB.md +++ b/docs/version-specific/supported-software/c/CSB.md @@ -4,7 +4,7 @@ search: --- # CSB -Computational Structural Biology Toolbox CSB is a python library and application framework, which can be used to solve problems in the field of structural bioinformatics. If you are a bioinformatician, software engineer or a researcher working in this field, chances are you may find something useful here. Our package consists of a few major components: 1. Core class library - object-oriented, granular, with an emphasis on design and clean interfaces. 2. Application framework - console applications ("protocols"), which consume objects from the core library in order to build something executable (and hopefully useful). 3. Test framework - ensures that the library actually works. +Computational Structural Biology Toolbox CSB is a python library and application framework, which can be used to solve problems in the field of structural bioinformatics. If you are a bioinformatician, software engineer or a researcher working in this field, chances are you may find something useful here. Our package consists of a few major components: 1. Core class library - object-oriented, granular, with an emphasis on design and clean interfaces. 2. Application framework - console applications ("protocols"), which consume objects from the core library in order to build something executable (and hopefully useful). 3. Test framework - ensures that the library actually works. *homepage*: diff --git a/docs/version-specific/supported-software/c/CSBDeep.md b/docs/version-specific/supported-software/c/CSBDeep.md index b77fdb73bf..be5720665d 100644 --- a/docs/version-specific/supported-software/c/CSBDeep.md +++ b/docs/version-specific/supported-software/c/CSBDeep.md @@ -10,8 +10,6 @@ CSBDeep is a toolbox for Content-aware Image Restoration (CARE). version | versionsuffix | toolchain --------|---------------|---------- -``0.4.1`` | ``-Python-3.7.2`` | ``foss/2019a`` -``0.4.1`` | ``-Python-3.7.2`` | ``fosscuda/2019a`` ``0.7.4`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``0.7.4`` | | ``foss/2022a`` ``0.7.4`` | | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/c/CSBLAST.md b/docs/version-specific/supported-software/c/CSBLAST.md index 43f9a8f479..c6ef580442 100644 --- a/docs/version-specific/supported-software/c/CSBLAST.md +++ b/docs/version-specific/supported-software/c/CSBLAST.md @@ -10,7 +10,6 @@ Context-specific extension of BLAST that significantly improves sensitivity and version | toolchain --------|---------- -``2.2.3`` | ``GCCcore/8.3.0`` ``2.2.4`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/0/3d-dna.md b/docs/version-specific/supported-software/c/CTranslate2.md similarity index 82% rename from docs/version-specific/supported-software/0/3d-dna.md rename to docs/version-specific/supported-software/c/CTranslate2.md index 68e9739741..83ff655929 100644 --- a/docs/version-specific/supported-software/0/3d-dna.md +++ b/docs/version-specific/supported-software/c/CTranslate2.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# 3d-dna +# CTranslate2 -3D de novo assembly (3D DNA) pipeline +Fast inference engine for Transformer models. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``180922`` | ``-Python-2.7.15`` | ``GCCcore/8.2.0`` +``4.5.0`` | ``-CUDA-12.6.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/augur.md b/docs/version-specific/supported-software/c/CUDA-Python.md similarity index 80% rename from docs/version-specific/supported-software/a/augur.md rename to docs/version-specific/supported-software/c/CUDA-Python.md index 47e3136167..507396393f 100644 --- a/docs/version-specific/supported-software/a/augur.md +++ b/docs/version-specific/supported-software/c/CUDA-Python.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# augur +# CUDA-Python -Pipeline components for real-time phylodynamic analysis +Python bindings for CUDA -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``7.0.2`` | ``-Python-3.7.4`` | ``intel/2019b`` +``12.1.0`` | ``-CUDA-%(version_major)s.%(version_minor)s.1`` | ``gfbf/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CUDA.md b/docs/version-specific/supported-software/c/CUDA.md index 60f6308854..fc3d29b23b 100644 --- a/docs/version-specific/supported-software/c/CUDA.md +++ b/docs/version-specific/supported-software/c/CUDA.md @@ -10,17 +10,6 @@ CUDA (formerly Compute Unified Device Architecture) is a parallel computing pla version | toolchain --------|---------- -``10.0.130`` | ``system`` -``10.1.105`` | ``GCC/8.2.0-2.31.1`` -``10.1.105`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``10.1.105`` | ``system`` -``10.1.168`` | ``system`` -``10.1.243`` | ``GCC/8.3.0`` -``10.1.243`` | ``iccifort/2019.5.281`` -``10.1.243`` | ``system`` -``10.2.89`` | ``GCC/8.3.0`` -``11.0.2`` | ``GCC/9.3.0`` -``11.0.2`` | ``iccifort/2020.1.217`` ``11.1.1`` | ``GCC/10.2.0`` ``11.1.1`` | ``iccifort/2020.4.304`` ``11.3.1`` | ``system`` @@ -42,28 +31,7 @@ version | toolchain ``12.4.0`` | ``system`` ``12.5.0`` | ``system`` ``12.6.0`` | ``system`` -``5.5.22`` | ``GCC/4.8.2`` -``5.5.22`` | ``system`` -``6.0.37`` | ``system`` -``6.5.14`` | ``system`` -``7.0.28`` | ``system`` -``7.5.18`` | ``GCC/4.9.4-2.25`` -``7.5.18`` | ``iccifort/2016.3.210-GCC-4.9.3-2.25`` -``7.5.18`` | ``system`` -``8.0.44`` | ``GCC/5.4.0-2.26`` -``8.0.44`` | ``iccifort/2016.3.210-GCC-5.4.0-2.26`` -``8.0.44`` | ``system`` -``8.0.61`` | ``system`` -``8.0.61_375.26`` | ``GCC/5.4.0-2.26`` -``9.0.176`` | ``GCC/6.4.0-2.28`` -``9.0.176`` | ``iccifort/2017.4.196-GCC-6.4.0-2.28`` -``9.0.176`` | ``system`` -``9.1.85`` | ``GCC/6.4.0-2.28`` -``9.1.85`` | ``system`` -``9.2.148.1`` | ``system`` -``9.2.88`` | ``GCC/6.4.0-2.28`` -``9.2.88`` | ``GCC/7.3.0-2.30`` -``9.2.88`` | ``system`` +``12.8.0`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CUnit.md b/docs/version-specific/supported-software/c/CUnit.md index d47d93999c..1be0551d92 100644 --- a/docs/version-specific/supported-software/c/CUnit.md +++ b/docs/version-specific/supported-software/c/CUnit.md @@ -13,7 +13,6 @@ version | toolchain ``2.1-3`` | ``GCCcore/11.2.0`` ``2.1-3`` | ``GCCcore/11.3.0`` ``2.1-3`` | ``GCCcore/12.3.0`` -``2.1-3`` | ``GCCcore/6.4.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CVX.md b/docs/version-specific/supported-software/c/CVX.md index 9a5c5b1704..094d7e18a8 100644 --- a/docs/version-specific/supported-software/c/CVX.md +++ b/docs/version-specific/supported-software/c/CVX.md @@ -11,6 +11,7 @@ CVX is a Matlab-based modeling system for convex optimization. CVX turns Matlab version | versionsuffix | toolchain --------|---------------|---------- ``2.2`` | ``-MATLAB-2023a`` | ``system`` +``2.2.2`` | ``-MATLAB-2024b`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CVXOPT.md b/docs/version-specific/supported-software/c/CVXOPT.md index 377f7a1503..2893917755 100644 --- a/docs/version-specific/supported-software/c/CVXOPT.md +++ b/docs/version-specific/supported-software/c/CVXOPT.md @@ -6,18 +6,14 @@ search: CVXOPT is a free software package for convex optimization based on the Python programming language. Its main purpose is to make the development of software for convex optimization applications straightforward by building on Python's extensive standard library and on the strengths of Python as a high-level programming language. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.9`` | ``-Python-2.7.13`` | ``intel/2017a`` -``1.2.1`` | ``-Python-3.6.4`` | ``intel/2018a`` -``1.2.3`` | | ``foss/2019a`` -``1.2.3`` | ``-Python-3.6.6`` | ``intel/2018b`` -``1.2.4`` | ``-Python-3.7.4`` | ``intel/2019b`` -``1.2.6`` | | ``foss/2020b`` -``1.2.6`` | | ``foss/2021a`` -``1.3.1`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``1.2.6`` | ``foss/2020b`` +``1.2.6`` | ``foss/2021a`` +``1.3.1`` | ``foss/2022a`` +``1.3.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CVXPY.md b/docs/version-specific/supported-software/c/CVXPY.md index 21cf32ec6e..1dab4abcf6 100644 --- a/docs/version-specific/supported-software/c/CVXPY.md +++ b/docs/version-specific/supported-software/c/CVXPY.md @@ -4,16 +4,14 @@ search: --- # CVXPY -CVXPY is a Python-embedded modeling language for convex optimization problems. It allows you to express your problem in a natural way that follows the math, rather than in the restrictive standard form required by solvers. +CVXPY is a Python-embedded modeling language for convex optimization problems. It allows you to express your problem in a natural way that follows the math, rather than in the restrictive standard form required by solvers. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.24`` | | ``foss/2019a`` -``1.0.28`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.3.0`` | | ``foss/2022a`` -``1.4.2`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``1.3.0`` | ``foss/2022a`` +``1.4.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CaDiCaL.md b/docs/version-specific/supported-software/c/CaDiCaL.md deleted file mode 100644 index e0674b18c5..0000000000 --- a/docs/version-specific/supported-software/c/CaDiCaL.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CaDiCaL - -CaDiCaL is a simplified satisfiability solver. The original goal of the development of CaDiCaL was to obtain a CDCL solver, which is easy to understand and change, while at the same time not being much slower than other state-of-the-art CDCL solvers. - -*homepage*: - -version | toolchain ---------|---------- -``1.3.0`` | ``GCC/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CaVEMan.md b/docs/version-specific/supported-software/c/CaVEMan.md deleted file mode 100644 index 4799c3787e..0000000000 --- a/docs/version-specific/supported-software/c/CaVEMan.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CaVEMan - -SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer samples. Supports both bam and cram format via htslib - -*homepage*: - -version | toolchain ---------|---------- -``1.13.2`` | ``foss/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/Caffe.md b/docs/version-specific/supported-software/c/Caffe.md deleted file mode 100644 index 690f1387de..0000000000 --- a/docs/version-specific/supported-software/c/Caffe.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Caffe - -Caffe is a deep learning framework made with expression, speed, and modularity in mind. It is developed by the Berkeley Vision and Learning Center (BVLC) and community contributors. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``1.0`` | ``-CUDA-9.1.85-Python-2.7.14`` | ``intel/2017b`` -``1.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``rc3`` | ``-CUDA-7.5.18-Python-2.7.11`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/Calcam.md b/docs/version-specific/supported-software/c/Calcam.md deleted file mode 100644 index c649407657..0000000000 --- a/docs/version-specific/supported-software/c/Calcam.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Calcam - -Calcam is a Python package providing tools for spatial calibration of cameras, i.e. determining the mapping between pixel coordinates in an image and real-world 3D sight lines & coordinates. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1.0`` | ``-Python-2.7.14`` | ``intel/2018a`` -``2.1.0`` | ``-Python-3.6.4`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/Calendrical.md b/docs/version-specific/supported-software/c/Calendrical.md deleted file mode 100644 index 0b089469a6..0000000000 --- a/docs/version-specific/supported-software/c/Calendrical.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Calendrical - -Calendrical module is for calendrical calculations. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0.1`` | ``-Python-3.6.3`` | ``intel/2017b`` -``2.0.2a`` | ``-Python-3.6.4`` | ``intel/2018a`` -``2.0.2a`` | ``-Python-3.6.6`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/Calib.md b/docs/version-specific/supported-software/c/Calib.md deleted file mode 100644 index 2ca2f4a835..0000000000 --- a/docs/version-specific/supported-software/c/Calib.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Calib - -Calib clusters paired-end reads using their barcodes and sequences. Calib is suitable for amplicon sequencing where a molecule is tagged, then PCR amplified with high depth, also known as Unique Molecule Identifier (UMI) sequencing. - -*homepage*: - -version | toolchain ---------|---------- -``0.3.4`` | ``GCC/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/Cantera.md b/docs/version-specific/supported-software/c/Cantera.md index ea0f157b30..22adcd82fd 100644 --- a/docs/version-specific/supported-software/c/Cantera.md +++ b/docs/version-specific/supported-software/c/Cantera.md @@ -8,18 +8,10 @@ Chemical kinetics, thermodynamics, and transport tool suite *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.2.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``2.3.0`` | ``-Python-2.7.12`` | ``foss/2016b`` -``2.3.0`` | ``-Python-2.7.14`` | ``foss/2017b`` -``2.3.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``2.3.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``2.3.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.3.0`` | ``-Python-2.7.14`` | ``intel/2018a`` -``2.4.0`` | ``-Python-2.7.14`` | ``intel/2018a`` -``2.6.0`` | | ``foss/2022a`` -``3.0.0`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``2.6.0`` | ``foss/2022a`` +``3.0.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/Canvas.md b/docs/version-specific/supported-software/c/Canvas.md deleted file mode 100644 index dd31ce507e..0000000000 --- a/docs/version-specific/supported-software/c/Canvas.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Canvas - -Copy number variant (CNV) calling from DNA sequencing data - -*homepage*: - -version | toolchain ---------|---------- -``1.39.0.1598`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CapnProto.md b/docs/version-specific/supported-software/c/CapnProto.md index b8308ce34d..d7dbfb08c7 100644 --- a/docs/version-specific/supported-software/c/CapnProto.md +++ b/docs/version-specific/supported-software/c/CapnProto.md @@ -12,14 +12,12 @@ version | toolchain --------|---------- ``0.10.2`` | ``GCCcore/11.3.0`` ``0.10.3`` | ``GCCcore/12.2.0`` -``0.6.1`` | ``GCCcore/6.4.0`` -``0.7.0`` | ``GCCcore/7.3.0`` -``0.8.0`` | ``GCCcore/9.3.0`` ``0.9.1`` | ``GCCcore/10.2.0`` ``0.9.1`` | ``GCCcore/10.3.0`` ``0.9.1`` | ``GCCcore/11.2.0`` ``1.0.1`` | ``GCCcore/12.3.0`` ``1.0.1.1`` | ``GCCcore/13.2.0`` +``1.1.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/Carma.md b/docs/version-specific/supported-software/c/Carma.md deleted file mode 100644 index 0dfe4c0a48..0000000000 --- a/docs/version-specific/supported-software/c/Carma.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Carma - -Carma - A molecular dynamics analysis program - -*homepage*: - -version | toolchain ---------|---------- -``2.01`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/Cartopy.md b/docs/version-specific/supported-software/c/Cartopy.md index 4a23d1f08d..580f38fe4c 100644 --- a/docs/version-specific/supported-software/c/Cartopy.md +++ b/docs/version-specific/supported-software/c/Cartopy.md @@ -8,16 +8,15 @@ Cartopy is a Python package designed to make drawing maps for data analysis and *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.18.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.18.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``0.19.0.post1`` | | ``foss/2020b`` -``0.19.0.post1`` | | ``intel/2020b`` -``0.20.0`` | | ``foss/2021a`` -``0.20.3`` | | ``foss/2021b`` -``0.20.3`` | | ``foss/2022a`` -``0.22.0`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``0.19.0.post1`` | ``foss/2020b`` +``0.19.0.post1`` | ``intel/2020b`` +``0.20.0`` | ``foss/2021a`` +``0.20.3`` | ``foss/2021b`` +``0.20.3`` | ``foss/2022a`` +``0.22.0`` | ``foss/2023a`` +``0.24.1`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CastXML.md b/docs/version-specific/supported-software/c/CastXML.md index a214ac146f..5f78ccb16e 100644 --- a/docs/version-specific/supported-software/c/CastXML.md +++ b/docs/version-specific/supported-software/c/CastXML.md @@ -10,9 +10,7 @@ CastXML is a C-family abstract syntax tree XML output tool. version | toolchain --------|---------- -``0.4.3`` | ``GCCcore/8.3.0`` -``20160617`` | ``foss/2016a`` -``20180806`` | ``foss/2018a`` +``0.6.10`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CatMAP.md b/docs/version-specific/supported-software/c/CatMAP.md index 12eb188b04..bd8d7f8374 100644 --- a/docs/version-specific/supported-software/c/CatMAP.md +++ b/docs/version-specific/supported-software/c/CatMAP.md @@ -6,12 +6,11 @@ search: Catalyst Micro-kinetic Analysis Package for automated creation of micro-kinetic models used in catalyst screening. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``20170927`` | ``-Python-2.7.14`` | ``intel/2017b`` -``20220519`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``20220519`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/Catch2.md b/docs/version-specific/supported-software/c/Catch2.md index 022b3ba63f..f4b661c418 100644 --- a/docs/version-specific/supported-software/c/Catch2.md +++ b/docs/version-specific/supported-software/c/Catch2.md @@ -4,20 +4,19 @@ search: --- # Catch2 -A modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later (or C++03 on the Catch1.x branch) +A modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later *homepage*: version | toolchain --------|---------- -``2.11.0`` | ``system`` ``2.13.10`` | ``GCCcore/13.3.0`` ``2.13.4`` | ``system`` ``2.13.9`` | ``GCCcore/12.2.0`` ``2.13.9`` | ``GCCcore/12.3.0`` ``2.13.9`` | ``GCCcore/13.2.0`` ``2.13.9`` | ``system`` -``2.9.1`` | ``system`` +``3.8.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/Cbc.md b/docs/version-specific/supported-software/c/Cbc.md index 3aab1d8784..7c13a2602d 100644 --- a/docs/version-specific/supported-software/c/Cbc.md +++ b/docs/version-specific/supported-software/c/Cbc.md @@ -11,7 +11,8 @@ Cbc (Coin-or branch and cut) is an open-source mixed integer linear programming version | toolchain --------|---------- ``2.10.11`` | ``foss/2023a`` -``2.10.3`` | ``foss/2018b`` +``2.10.11`` | ``foss/2023b`` +``2.10.12`` | ``foss/2024a`` ``2.10.5`` | ``foss/2020b`` ``2.10.5`` | ``foss/2021a`` ``2.10.5`` | ``foss/2022b`` diff --git a/docs/version-specific/supported-software/c/CellBender.md b/docs/version-specific/supported-software/c/CellBender.md index c7a48075e4..ad34e51b2d 100644 --- a/docs/version-specific/supported-software/c/CellBender.md +++ b/docs/version-specific/supported-software/c/CellBender.md @@ -4,7 +4,7 @@ search: --- # CellBender -CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data +CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data *homepage*: diff --git a/docs/version-specific/supported-software/g/Glucose.md b/docs/version-specific/supported-software/c/CellProfiler.md similarity index 71% rename from docs/version-specific/supported-software/g/Glucose.md rename to docs/version-specific/supported-software/c/CellProfiler.md index f41eb5e282..f0c849e0c6 100644 --- a/docs/version-specific/supported-software/g/Glucose.md +++ b/docs/version-specific/supported-software/c/CellProfiler.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# Glucose +# CellProfiler -Glucose is based on a new scoring scheme (well, not so new now, it was introduced in 2009) for the clause learning mechanism of so called Modern SAT solvers (it is based on our IJCAI'09 paper). It is designed to be parallel, since v4.0. +CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically. -*homepage*: +*homepage*: version | toolchain --------|---------- -``4.1`` | ``GCC/9.3.0`` +``4.2.8`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CellRanger-ATAC.md b/docs/version-specific/supported-software/c/CellRanger-ATAC.md index b6e1c5b741..46cd878e11 100644 --- a/docs/version-specific/supported-software/c/CellRanger-ATAC.md +++ b/docs/version-specific/supported-software/c/CellRanger-ATAC.md @@ -4,7 +4,7 @@ search: --- # CellRanger-ATAC -Cell Ranger ATAC is a set of analysis pipelines that process Chromium Single Cell ATAC data. +Cell Ranger ATAC is a set of analysis pipelines that process Chromium Single Cell ATAC data. *homepage*: diff --git a/docs/version-specific/supported-software/c/CellRanger.md b/docs/version-specific/supported-software/c/CellRanger.md index c968d99052..933b86fe5a 100644 --- a/docs/version-specific/supported-software/c/CellRanger.md +++ b/docs/version-specific/supported-software/c/CellRanger.md @@ -10,9 +10,6 @@ Cell Ranger is a set of analysis pipelines that process Chromium single-cell RN version | toolchain --------|---------- -``3.0.0`` | ``system`` -``3.0.2`` | ``system`` -``3.1.0`` | ``system`` ``4.0.0`` | ``system`` ``5.0.0`` | ``system`` ``5.0.1`` | ``system`` @@ -25,6 +22,7 @@ version | toolchain ``7.2.0`` | ``system`` ``8.0.0`` | ``system`` ``8.0.1`` | ``system`` +``9.0.0`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CellRank.md b/docs/version-specific/supported-software/c/CellRank.md index 0709a42059..c71853ed0e 100644 --- a/docs/version-specific/supported-software/c/CellRank.md +++ b/docs/version-specific/supported-software/c/CellRank.md @@ -11,6 +11,7 @@ CellRank is a toolkit to uncover cellular dynamics based on Markov state modeli version | versionsuffix | toolchain --------|---------------|---------- ``1.4.0`` | | ``foss/2021a`` +``2.0.2`` | | ``foss/2022a`` ``2.0.2`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``2.0.2`` | | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/c/Cellformer.md b/docs/version-specific/supported-software/c/Cellformer.md new file mode 100644 index 0000000000..13dedd5bcb --- /dev/null +++ b/docs/version-specific/supported-software/c/Cellformer.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Cellformer + +An implementation of Cellformer from our publication: Berson et al. "Whole genome deconvolution unveils Alzheimer’s resilient epigenetic signature" + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``20240917`` | ``-R-4.3.2`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/c/Centrifuge.md b/docs/version-specific/supported-software/c/Centrifuge.md index 118a67c354..3d2e2e193e 100644 --- a/docs/version-specific/supported-software/c/Centrifuge.md +++ b/docs/version-specific/supported-software/c/Centrifuge.md @@ -6,13 +6,10 @@ search: Classifier for metagenomic sequences -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.0.3`` | ``foss/2018b`` -``1.0.4-beta`` | ``foss/2018b`` -``1.0.4-beta`` | ``gompi/2020a`` ``1.0.4`` | ``gompi/2020b`` ``1.0.4`` | ``gompi/2021a`` diff --git a/docs/version-specific/supported-software/c/Cereal.md b/docs/version-specific/supported-software/c/Cereal.md index d119563cfe..1cb9bed66a 100644 --- a/docs/version-specific/supported-software/c/Cereal.md +++ b/docs/version-specific/supported-software/c/Cereal.md @@ -4,7 +4,7 @@ search: --- # Cereal -cereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to be fast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone. +cereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to be fast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone. *homepage*: diff --git a/docs/version-specific/supported-software/c/Ceres-Solver.md b/docs/version-specific/supported-software/c/Ceres-Solver.md new file mode 100644 index 0000000000..6badbbda28 --- /dev/null +++ b/docs/version-specific/supported-software/c/Ceres-Solver.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Ceres-Solver + +Ceres Solver is an open source C++ library for modeling and solving large, complicated optimization problems + +*homepage*: + +version | toolchain +--------|---------- +``2.2.0`` | ``foss/2022b`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/c/Cgl.md b/docs/version-specific/supported-software/c/Cgl.md index b7d45dbbe5..337fbdd518 100644 --- a/docs/version-specific/supported-software/c/Cgl.md +++ b/docs/version-specific/supported-software/c/Cgl.md @@ -10,11 +10,12 @@ The COIN-OR Cut Generation Library (Cgl) is a collection of cut generators that version | toolchain --------|---------- -``0.60.2`` | ``foss/2018b`` ``0.60.3`` | ``foss/2020b`` ``0.60.3`` | ``foss/2021a`` ``0.60.7`` | ``foss/2022b`` ``0.60.8`` | ``foss/2023a`` +``0.60.8`` | ``foss/2023b`` +``0.60.8`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CharLS.md b/docs/version-specific/supported-software/c/CharLS.md index f0c6eea1ee..f3478f3c81 100644 --- a/docs/version-specific/supported-software/c/CharLS.md +++ b/docs/version-specific/supported-software/c/CharLS.md @@ -10,15 +10,13 @@ CharLS is a C++ implementation of the JPEG-LS standard for lossless and near-los version | toolchain --------|---------- -``2.0.0`` | ``GCCcore/6.4.0`` -``2.0.0`` | ``GCCcore/7.3.0`` -``2.1.0`` | ``GCCcore/8.2.0`` -``2.1.0`` | ``GCCcore/8.3.0`` ``2.2.0`` | ``GCCcore/10.2.0`` ``2.3.4`` | ``GCCcore/10.3.0`` ``2.4.1`` | ``GCCcore/11.3.0`` ``2.4.2`` | ``GCCcore/12.2.0`` ``2.4.2`` | ``GCCcore/12.3.0`` +``2.4.2`` | ``GCCcore/13.2.0`` +``2.4.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CheMPS2.md b/docs/version-specific/supported-software/c/CheMPS2.md index b1cac90c16..3ceba36ebe 100644 --- a/docs/version-specific/supported-software/c/CheMPS2.md +++ b/docs/version-specific/supported-software/c/CheMPS2.md @@ -10,20 +10,10 @@ CheMPS2 is a scientific library which contains a spin-adapted implementation of version | toolchain --------|---------- -``1.6`` | ``intel/2016a`` -``1.7-rc2`` | ``intel/2016a`` -``1.7.1`` | ``intel/2016a`` -``1.7.2`` | ``intel/2016a`` -``1.8`` | ``intel/2016b`` ``1.8.11`` | ``foss/2021b`` ``1.8.12`` | ``foss/2022a`` ``1.8.12`` | ``foss/2022b`` -``1.8.8`` | ``intel/2018b`` -``1.8.9`` | ``foss/2018b`` -``1.8.9`` | ``foss/2019a`` -``1.8.9`` | ``intel/2018b`` -``1.8.9`` | ``intel/2019a`` -``1.8.9`` | ``intel/2019b`` +``1.8.12`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/Check.md b/docs/version-specific/supported-software/c/Check.md index bc6363982d..0a21bfdcad 100644 --- a/docs/version-specific/supported-software/c/Check.md +++ b/docs/version-specific/supported-software/c/Check.md @@ -4,13 +4,12 @@ search: --- # Check -Check is a unit testing framework for C. It features a simple interface for defining unit tests, putting little in the way of the developer. Tests are run in a separate address space, so both assertion failures and code errors that cause segmentation faults or other signals can be caught. Test results are reportable in the following: Subunit, TAP, XML, and a generic logging format. +Check is a unit testing framework for C. It features a simple interface for defining unit tests, putting little in the way of the developer. Tests are run in a separate address space, so both assertion failures and code errors that cause segmentation faults or other signals can be caught. Test results are reportable in the following: Subunit, TAP, XML, and a generic logging format. *homepage*: version | toolchain --------|---------- -``0.12.0`` | ``GCCcore/6.4.0`` ``0.15.2`` | ``GCCcore/10.2.0`` ``0.15.2`` | ``GCCcore/10.3.0`` ``0.15.2`` | ``GCCcore/11.2.0`` @@ -18,7 +17,7 @@ version | toolchain ``0.15.2`` | ``GCCcore/12.2.0`` ``0.15.2`` | ``GCCcore/12.3.0`` ``0.15.2`` | ``GCCcore/13.2.0`` -``0.15.2`` | ``GCCcore/9.3.0`` +``0.15.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CheckM.md b/docs/version-specific/supported-software/c/CheckM.md index 80c91b2110..b1120c3823 100644 --- a/docs/version-specific/supported-software/c/CheckM.md +++ b/docs/version-specific/supported-software/c/CheckM.md @@ -4,24 +4,16 @@ search: --- # CheckM -CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. +CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.0.13`` | ``-Python-2.7.14`` | ``foss/2017b`` -``1.0.13`` | ``-Python-3.6.3`` | ``foss/2017b`` -``1.0.13`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.0.13`` | ``-Python-2.7.14`` | ``intel/2017b`` -``1.0.13`` | ``-Python-3.6.3`` | ``intel/2017b`` -``1.0.18`` | ``-Python-2.7.15`` | ``foss/2019a`` ``1.0.18`` | ``-Python-2.7.18`` | ``foss/2020b`` -``1.1.2`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.1.2`` | ``-Python-3.7.4`` | ``intel/2019b`` +``1.0.18`` | ``-Python-2.7.18`` | ``foss/2023a`` ``1.1.3`` | | ``foss/2021a`` ``1.1.3`` | | ``foss/2021b`` -``1.1.3`` | ``-Python-3.8.2`` | ``intel/2020a`` ``1.2.2`` | | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/c/Cheetah.md b/docs/version-specific/supported-software/c/Cheetah.md deleted file mode 100644 index d5907ac170..0000000000 --- a/docs/version-specific/supported-software/c/Cheetah.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Cheetah - -Cheetah is an open source template engine and code generation tool. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.4.4`` | ``-Python-2.7.15`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/Chemaxon-Marvin.md b/docs/version-specific/supported-software/c/Chemaxon-Marvin.md index f0307eb838..2442f19e02 100644 --- a/docs/version-specific/supported-software/c/Chemaxon-Marvin.md +++ b/docs/version-specific/supported-software/c/Chemaxon-Marvin.md @@ -6,7 +6,7 @@ search: Marvin suite is a chemically intelligent desktop toolkit built to help you draw, edit, publish, render, import and export your chemical structures and as well as allowing you to convert between various chemical and graphical file formats. It is free for individual, academic and non-commercial use. -*homepage*: +*homepage*: version | toolchain --------|---------- diff --git a/docs/version-specific/supported-software/c/ChimPipe.md b/docs/version-specific/supported-software/c/ChimPipe.md deleted file mode 100644 index 8d0bebf692..0000000000 --- a/docs/version-specific/supported-software/c/ChimPipe.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ChimPipe - -ChimPipe is a computational method for the detection of novel transcription-induced chimeric transcripts and fusion genes from Illumina Paired-End RNA-seq data. It combines junction spanning and paired-end read information to accurately detect chimeric splice junctions at base-pair resolution. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.9.5`` | ``-Python-2.7.12`` | ``foss/2016b`` -``0.9.5`` | | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/Chimera.md b/docs/version-specific/supported-software/c/Chimera.md index 9dd573ddf7..ed72c7d6d8 100644 --- a/docs/version-specific/supported-software/c/Chimera.md +++ b/docs/version-specific/supported-software/c/Chimera.md @@ -4,13 +4,12 @@ search: --- # Chimera -UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles. +UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.10`` | ``-linux_x86_64`` | ``system`` ``1.16`` | ``-linux_x86_64`` | ``system`` diff --git a/docs/version-specific/supported-software/c/Chromaprint.md b/docs/version-specific/supported-software/c/Chromaprint.md deleted file mode 100644 index e1cfa15a70..0000000000 --- a/docs/version-specific/supported-software/c/Chromaprint.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Chromaprint - -Chromaprint is the core component of the AcoustID project. It's a client-side library that implements a custom algorithm for extracting fingerprints from any audio source. - -*homepage*: - -version | toolchain ---------|---------- -``1.4.3`` | ``GCCcore/8.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/Circos.md b/docs/version-specific/supported-software/c/Circos.md index d0bcaa2649..1a1b379a39 100644 --- a/docs/version-specific/supported-software/c/Circos.md +++ b/docs/version-specific/supported-software/c/Circos.md @@ -8,13 +8,9 @@ Circos is a software package for visualizing data and information. It visualize *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.69-5`` | ``-Perl-5.24.0`` | ``foss/2016b`` -``0.69-6`` | ``-Perl-5.26.1`` | ``GCCcore/6.4.0`` -``0.69-6`` | ``-Perl-5.28.0`` | ``GCCcore/7.3.0`` -``0.69-9`` | | ``GCCcore/11.3.0`` -``0.69-9`` | | ``GCCcore/9.3.0`` +version | toolchain +--------|---------- +``0.69-9`` | ``GCCcore/11.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/Clang-Python-bindings.md b/docs/version-specific/supported-software/c/Clang-Python-bindings.md index 5a6486f875..1ad30a2546 100644 --- a/docs/version-specific/supported-software/c/Clang-Python-bindings.md +++ b/docs/version-specific/supported-software/c/Clang-Python-bindings.md @@ -8,13 +8,11 @@ Python bindings for libclang *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``10.0.1`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` -``13.0.1`` | | ``GCCcore/11.2.0`` -``13.0.1`` | | ``GCCcore/11.3.0`` -``16.0.6`` | | ``GCCcore/12.3.0`` -``8.0.0`` | ``-Python-2.7.15`` | ``GCCcore/8.2.0`` +version | toolchain +--------|---------- +``13.0.1`` | ``GCCcore/11.2.0`` +``13.0.1`` | ``GCCcore/11.3.0`` +``16.0.6`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/Clang.md b/docs/version-specific/supported-software/c/Clang.md index d95a9ddaf4..91694d894a 100644 --- a/docs/version-specific/supported-software/c/Clang.md +++ b/docs/version-specific/supported-software/c/Clang.md @@ -10,10 +10,6 @@ C, C++, Objective-C compiler, based on LLVM. Does not include C++ standard lib version | versionsuffix | toolchain --------|---------------|---------- -``10.0.0`` | | ``GCCcore/8.3.0`` -``10.0.0`` | | ``GCCcore/9.3.0`` -``10.0.1`` | | ``GCCcore/9.3.0`` -``11.0.0`` | | ``GCCcore/9.3.0`` ``11.0.1`` | | ``GCCcore/10.2.0`` ``11.0.1`` | | ``gcccuda/2020b`` ``12.0.1`` | ``-CUDA-11.3.1`` | ``GCCcore/10.3.0`` @@ -29,32 +25,8 @@ version | versionsuffix | toolchain ``16.0.6`` | | ``GCCcore/12.3.0`` ``17.0.0_20230515`` | ``-CUDA-12.1.1`` | ``GCCcore/12.3.0`` ``17.0.6`` | | ``GCCcore/13.2.0`` +``18.1.8`` | ``-CUDA-12.6.0`` | ``GCCcore/13.3.0`` ``18.1.8`` | | ``GCCcore/13.3.0`` -``3.3`` | | ``GCC/4.8.1`` -``3.4`` | | ``GCC/4.8.2`` -``3.4.1`` | | ``GCC/4.8.2`` -``3.4.2`` | | ``GCC/4.8.2`` -``3.6.0`` | | ``GCC/4.9.2`` -``3.6.1`` | | ``GCC/4.9.2`` -``3.7.0`` | | ``GNU/4.9.3-2.25`` -``3.7.1`` | | ``GCC/4.9.3-2.25`` -``3.7.1`` | | ``foss/2016a`` -``3.8.0`` | | ``GCC/4.9.3-2.25`` -``3.8.1`` | | ``GCC/5.4.0-2.26`` -``3.8.1`` | | ``foss/2016b`` -``5.0.0`` | | ``GCC/6.4.0-2.28`` -``5.0.1`` | | ``GCC/6.4.0-2.28`` -``6.0.1`` | | ``GCC/6.4.0-2.28`` -``6.0.1`` | | ``GCC/7.3.0-2.30`` -``7.0.0`` | | ``GCC/6.4.0-2.28`` -``7.0.1`` | | ``GCC/7.3.0-2.30`` -``8.0.0`` | ``-CUDA-10.1.105`` | ``GCCcore/8.2.0`` -``8.0.0`` | | ``GCCcore/8.2.0`` -``8.0.1`` | ``-CUDA-10.1.105`` | ``GCC/8.2.0-2.31.1`` -``8.0.1`` | ``-CUDA-10.1.243`` | ``GCC/8.3.0`` -``9.0.1`` | ``-CUDA-10.1.243`` | ``GCC/8.3.0`` -``9.0.1`` | | ``GCCcore/8.3.0`` -``9.0.1`` | | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/ClonalFrameML.md b/docs/version-specific/supported-software/c/ClonalFrameML.md deleted file mode 100644 index 753583336a..0000000000 --- a/docs/version-specific/supported-software/c/ClonalFrameML.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ClonalFrameML - -Efficient Inference of Recombination in Whole Bacterial Genomes - -*homepage*: - -version | toolchain ---------|---------- -``1.11`` | ``foss/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/Clp.md b/docs/version-specific/supported-software/c/Clp.md index 7f4ba437a6..cdc92613b6 100644 --- a/docs/version-specific/supported-software/c/Clp.md +++ b/docs/version-specific/supported-software/c/Clp.md @@ -10,12 +10,13 @@ Clp (Coin-or linear programming) is an open-source linear programming solver. It version | toolchain --------|---------- -``1.17.3`` | ``foss/2018b`` +``1.17.10`` | ``foss/2024a`` ``1.17.6`` | ``foss/2020b`` ``1.17.6`` | ``foss/2021a`` ``1.17.7`` | ``foss/2021b`` ``1.17.8`` | ``foss/2022b`` ``1.17.9`` | ``foss/2023a`` +``1.17.9`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/Clustal-Omega.md b/docs/version-specific/supported-software/c/Clustal-Omega.md index e2d8fe494a..a3b3b00a9a 100644 --- a/docs/version-specific/supported-software/c/Clustal-Omega.md +++ b/docs/version-specific/supported-software/c/Clustal-Omega.md @@ -10,14 +10,10 @@ Clustal Omega is a multiple sequence alignment program for proteins. It produce version | toolchain --------|---------- -``1.2.0`` | ``foss/2016b`` ``1.2.4`` | ``GCC/10.2.0`` ``1.2.4`` | ``GCC/10.3.0`` ``1.2.4`` | ``GCC/11.2.0`` -``1.2.4`` | ``GCC/8.3.0`` -``1.2.4`` | ``foss/2018b`` -``1.2.4`` | ``intel/2018a`` -``1.2.4`` | ``intel/2018b`` +``1.2.4`` | ``GCC/12.3.0`` ``1.2.4`` | ``intel-compilers/2021.2.0`` diff --git a/docs/version-specific/supported-software/c/ClustalW2.md b/docs/version-specific/supported-software/c/ClustalW2.md index d7f63b57ca..406a488e50 100644 --- a/docs/version-specific/supported-software/c/ClustalW2.md +++ b/docs/version-specific/supported-software/c/ClustalW2.md @@ -13,13 +13,7 @@ version | toolchain ``2.1`` | ``GCC/10.3.0`` ``2.1`` | ``GCC/11.2.0`` ``2.1`` | ``GCC/12.3.0`` -``2.1`` | ``foss/2016b`` -``2.1`` | ``foss/2018b`` ``2.1`` | ``foss/2021a`` -``2.1`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``2.1`` | ``intel/2017b`` -``2.1`` | ``intel/2018b`` -``2.1`` | ``intel/2020a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/Cluster-Buster.md b/docs/version-specific/supported-software/c/Cluster-Buster.md index 7a1fba504e..d09f94dbd5 100644 --- a/docs/version-specific/supported-software/c/Cluster-Buster.md +++ b/docs/version-specific/supported-software/c/Cluster-Buster.md @@ -4,14 +4,14 @@ search: --- # Cluster-Buster -Cluster-Buster: Finding dense clusters of motifs in DNA sequences +Cluster-Buster is a program for finding interesting functional regions, such as transcriptional enhancers, in DNA sequences. -*homepage*: +*homepage*: version | toolchain --------|---------- -``20160106`` | ``intel/2016a`` ``20200507`` | ``GCC/12.2.0`` +``20240927`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/ClusterShell.md b/docs/version-specific/supported-software/c/ClusterShell.md deleted file mode 100644 index a571d4441c..0000000000 --- a/docs/version-specific/supported-software/c/ClusterShell.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ClusterShell - -ClusterShell is an event-driven open source Python library, designed to run local or distant commands in parallel on server farms or on large Linux clusters. - -*homepage*: - -version | toolchain ---------|---------- -``1.7.3`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/Co-phylog.md b/docs/version-specific/supported-software/c/Co-phylog.md deleted file mode 100644 index df0e470f8a..0000000000 --- a/docs/version-specific/supported-software/c/Co-phylog.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Co-phylog - -Co-phylog: an assembly-free phylogenomic approach for closely related organisms H Yi, L Jin Nucleic acids research 41 (7), e75-e75 - -*homepage*: - -version | toolchain ---------|---------- -``20201012`` | ``GCC/7.3.0-2.30`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CoCoALib.md b/docs/version-specific/supported-software/c/CoCoALib.md index cc1daf4836..e6efad47d2 100644 --- a/docs/version-specific/supported-software/c/CoCoALib.md +++ b/docs/version-specific/supported-software/c/CoCoALib.md @@ -6,12 +6,10 @@ search: CoCoALib is a free GPL3 C++ library for doing Computations in Commutative Algebra. -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.99601`` | ``GCC/8.2.0-2.31.1`` -``0.99700`` | ``GCC/8.3.0`` ``0.99818`` | ``GCC/11.3.0`` ``0.99850`` | ``GCC/13.2.0`` diff --git a/docs/version-specific/supported-software/c/CodingQuarry.md b/docs/version-specific/supported-software/c/CodingQuarry.md index ebc1b4b95b..769db6b134 100644 --- a/docs/version-specific/supported-software/c/CodingQuarry.md +++ b/docs/version-specific/supported-software/c/CodingQuarry.md @@ -11,6 +11,8 @@ Highly accurate hidden Markov model gene prediction in fungal genomes using RNA- version | toolchain --------|---------- ``2.0`` | ``foss/2021b`` +``2.0`` | ``foss/2023a`` +``2.0`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CoinUtils.md b/docs/version-specific/supported-software/c/CoinUtils.md index 6ecccd3942..0a7333181d 100644 --- a/docs/version-specific/supported-software/c/CoinUtils.md +++ b/docs/version-specific/supported-software/c/CoinUtils.md @@ -11,8 +11,8 @@ CoinUtils (Coin-OR Utilities) is an open-source collection of classes and functi version | toolchain --------|---------- ``2.11.10`` | ``GCC/12.3.0`` -``2.11.3`` | ``GCCcore/7.3.0`` -``2.11.3`` | ``foss/2018b`` +``2.11.10`` | ``GCC/13.2.0`` +``2.11.12`` | ``GCC/13.3.0`` ``2.11.4`` | ``GCC/10.3.0`` ``2.11.4`` | ``GCCcore/10.2.0`` ``2.11.6`` | ``GCC/11.2.0`` diff --git a/docs/version-specific/supported-software/c/Commet.md b/docs/version-specific/supported-software/c/Commet.md deleted file mode 100644 index a0e172866f..0000000000 --- a/docs/version-specific/supported-software/c/Commet.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Commet - -COMMET ("COmpare Multiple METagenomes") provides a global similarity overview between all datasets of a large metagenomic project. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20150415`` | ``-Python-2.7.11`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CompareM.md b/docs/version-specific/supported-software/c/CompareM.md index e46a47ffd9..c4c346c7f1 100644 --- a/docs/version-specific/supported-software/c/CompareM.md +++ b/docs/version-specific/supported-software/c/CompareM.md @@ -8,10 +8,9 @@ A toolbox for comparative genomics. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.0.23`` | ``-Python-2.7.15`` | ``foss/2018b`` -``0.1.2`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``0.1.2`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/Compress-Raw-Zlib.md b/docs/version-specific/supported-software/c/Compress-Raw-Zlib.md index 84ccb4bfdc..c34e7d2cb3 100644 --- a/docs/version-specific/supported-software/c/Compress-Raw-Zlib.md +++ b/docs/version-specific/supported-software/c/Compress-Raw-Zlib.md @@ -12,6 +12,8 @@ version | toolchain --------|---------- ``2.202`` | ``GCCcore/11.3.0`` ``2.202`` | ``GCCcore/12.2.0`` +``2.213`` | ``GCCcore/12.3.0`` +``2.213`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/Con3F.md b/docs/version-specific/supported-software/c/Con3F.md deleted file mode 100644 index 52055e6aba..0000000000 --- a/docs/version-specific/supported-software/c/Con3F.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Con3F - -Con3F is a Python package to read, manipulate and convert force field files - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0-20190329`` | ``-Python-3.7.2`` | ``intel/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/ConcurrentVersionsSystem.md b/docs/version-specific/supported-software/c/ConcurrentVersionsSystem.md index 10ac175f96..c77b186dd2 100644 --- a/docs/version-specific/supported-software/c/ConcurrentVersionsSystem.md +++ b/docs/version-specific/supported-software/c/ConcurrentVersionsSystem.md @@ -4,17 +4,14 @@ search: --- # ConcurrentVersionsSystem -CVS is a version control system, an important component of Source Configuration Management (SCM). +CVS is a version control system, an important component of Source Configuration Management (SCM). *homepage*: version | toolchain --------|---------- -``1.11.23`` | ``GCC/4.8.2`` ``1.11.23`` | ``GCCcore/11.2.0`` ``1.11.23`` | ``GCCcore/13.3.0`` -``1.11.23`` | ``GCCcore/4.9.3`` -``1.11.23`` | ``GCCcore/6.4.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/ConnectomeWorkbench.md b/docs/version-specific/supported-software/c/ConnectomeWorkbench.md index d51410b387..c6629fd838 100644 --- a/docs/version-specific/supported-software/c/ConnectomeWorkbench.md +++ b/docs/version-specific/supported-software/c/ConnectomeWorkbench.md @@ -4,16 +4,12 @@ search: --- # ConnectomeWorkbench -Connectome Workbench is an open-source visualization and discovery tool used to explore data generated by the Human Connectome Project. The distribution includes wb_view, a GUI-based visualization platform, and wb_command, a command-line program for performing a variety of algorithmic tasks using volume, surface, and grayordinate data. +Connectome Workbench is an open-source visualization and discovery tool used to explore data generated by the Human Connectome Project. The distribution includes wb_view, a GUI-based visualization platform, and wb_command, a command-line program for performing a variety of algorithmic tasks using volume, surface, and grayordinate data. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.2.2`` | | ``system`` -``1.3.2`` | | ``GCCcore/8.2.0`` -``1.3.2`` | | ``foss/2017b`` -``1.3.2`` | | ``intel/2017b`` ``1.4.2`` | ``-rh_linux64`` | ``system`` ``1.5.0`` | | ``GCCcore/10.3.0`` diff --git a/docs/version-specific/supported-software/c/Control-FREEC.md b/docs/version-specific/supported-software/c/Control-FREEC.md index a20dfaf1c8..bd9e8f6ef2 100644 --- a/docs/version-specific/supported-software/c/Control-FREEC.md +++ b/docs/version-specific/supported-software/c/Control-FREEC.md @@ -4,14 +4,12 @@ search: --- # Control-FREEC -Copy number and genotype annotation from whole genome and whole exome sequencing data. +Copy number and genotype annotation from whole genome and whole exome sequencing data. *homepage*: version | toolchain --------|---------- -``11.5`` | ``GCC/7.3.0-2.30`` -``11.5`` | ``GCC/8.2.0-2.31.1`` ``11.6`` | ``GCC/10.2.0`` diff --git a/docs/version-specific/supported-software/c/CoordgenLibs.md b/docs/version-specific/supported-software/c/CoordgenLibs.md index d40ee8d321..e780795bf7 100644 --- a/docs/version-specific/supported-software/c/CoordgenLibs.md +++ b/docs/version-specific/supported-software/c/CoordgenLibs.md @@ -10,12 +10,8 @@ Schrodinger-developed 2D Coordinate Generation version | toolchain --------|---------- -``1.3.2`` | ``gompi/2019a`` -``1.3.2`` | ``iimpi/2019a`` -``3.0.1`` | ``gompi/2019b`` ``3.0.1`` | ``gompi/2021a`` ``3.0.1`` | ``gompi/2022a`` -``3.0.1`` | ``iimpi/2020a`` ``3.0.2`` | ``gompi/2023a`` diff --git a/docs/version-specific/supported-software/c/Coot.md b/docs/version-specific/supported-software/c/Coot.md index aadb839522..38db0af7a3 100644 --- a/docs/version-specific/supported-software/c/Coot.md +++ b/docs/version-specific/supported-software/c/Coot.md @@ -4,13 +4,12 @@ search: --- # Coot -Coot is for macromolecular model building, model completion and validation, particularly suitable for protein modelling using X-ray data. +Coot is for macromolecular model building, model completion and validation, particularly suitable for protein modelling using X-ray data. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``0.8.1`` | ``-binary-Linux-x86_64-rhel-6-python-gtk2`` | ``system`` ``0.9.8.92`` | ``-binary-Linux-x86_64-scientific-linux-7.6-python-gtk2`` | ``system`` diff --git a/docs/version-specific/supported-software/c/Coreutils.md b/docs/version-specific/supported-software/c/Coreutils.md index 8de68209f8..240c285557 100644 --- a/docs/version-specific/supported-software/c/Coreutils.md +++ b/docs/version-specific/supported-software/c/Coreutils.md @@ -4,17 +4,12 @@ search: --- # Coreutils -The GNU Core Utilities are the basic file, shell and text manipulation utilities of the GNU operating system. These are the core utilities which are expected to exist on every operating system. +The GNU Core Utilities are the basic file, shell and text manipulation utilities of the GNU operating system. These are the core utilities which are expected to exist on every operating system. -*homepage*: +*homepage*: version | toolchain --------|---------- -``8.23`` | ``GCC/4.9.2`` -``8.27`` | ``GCCcore/5.4.0`` -``8.29`` | ``GCCcore/6.4.0`` -``8.32`` | ``GCCcore/8.3.0`` -``8.32`` | ``GCCcore/9.3.0`` ``9.0`` | ``GCCcore/11.2.0`` ``9.1`` | ``GCCcore/11.3.0`` ``9.1`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/c/CppUnit.md b/docs/version-specific/supported-software/c/CppUnit.md index 22f279498c..b28ace0cf9 100644 --- a/docs/version-specific/supported-software/c/CppUnit.md +++ b/docs/version-specific/supported-software/c/CppUnit.md @@ -6,20 +6,15 @@ search: CppUnit is the C++ port of the famous JUnit framework for unit testing. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.12.1`` | ``GCCcore/6.4.0`` -``1.12.1`` | ``GCCcore/7.3.0`` -``1.12.1`` | ``foss/2016a`` ``1.15.1`` | ``GCCcore/10.2.0`` ``1.15.1`` | ``GCCcore/10.3.0`` ``1.15.1`` | ``GCCcore/11.3.0`` ``1.15.1`` | ``GCCcore/12.2.0`` ``1.15.1`` | ``GCCcore/12.3.0`` -``1.15.1`` | ``GCCcore/8.3.0`` -``1.15.1`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CrayCCE.md b/docs/version-specific/supported-software/c/CrayCCE.md deleted file mode 100644 index 08b6e8e4ed..0000000000 --- a/docs/version-specific/supported-software/c/CrayCCE.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CrayCCE - -Toolchain using Cray compiler wrapper, using PrgEnv-cray (PE release: June 2019). - -*homepage*: - -version | toolchain ---------|---------- -``19.06`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CrayGNU.md b/docs/version-specific/supported-software/c/CrayGNU.md deleted file mode 100644 index da87f867c4..0000000000 --- a/docs/version-specific/supported-software/c/CrayGNU.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CrayGNU - -Toolchain using Cray compiler wrapper, using PrgEnv-gnu module (PE release: June 2019). - -*homepage*: - -version | toolchain ---------|---------- -``19.06`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CrayIntel.md b/docs/version-specific/supported-software/c/CrayIntel.md deleted file mode 100644 index 8d2d6b9273..0000000000 --- a/docs/version-specific/supported-software/c/CrayIntel.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CrayIntel - -Toolchain using Cray compiler wrapper, using PrgEnv-intel (PE release: June 2019). - -*homepage*: - -version | toolchain ---------|---------- -``19.06`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CrayPGI.md b/docs/version-specific/supported-software/c/CrayPGI.md deleted file mode 100644 index 0166150dfb..0000000000 --- a/docs/version-specific/supported-software/c/CrayPGI.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CrayPGI - -Toolchain using Cray compiler wrapper, PrgEnv-pgi compiler (PE release: June 2019). - -*homepage*: - -version | toolchain ---------|---------- -``19.06`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/Critic2.md b/docs/version-specific/supported-software/c/Critic2.md index 0a9c3f4949..b551aba478 100644 --- a/docs/version-specific/supported-software/c/Critic2.md +++ b/docs/version-specific/supported-software/c/Critic2.md @@ -10,7 +10,9 @@ Critic2 is a program for the analysis of quantum mechanical calculation results version | toolchain --------|---------- +``1.2`` | ``foss/2022a`` ``1.2`` | ``foss/2023a`` +``1.2`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CrossMap.md b/docs/version-specific/supported-software/c/CrossMap.md deleted file mode 100644 index 286c62950c..0000000000 --- a/docs/version-specific/supported-software/c/CrossMap.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CrossMap - -CrossMap is a program for genome coordinates conversion between different assemblies (such as hg18 (NCBI36) <=> hg19 (GRCh37)). It supports commonly used file formats including BAM, CRAM, SAM, Wiggle, BigWig, BED, GFF, GTF and VCF. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.3.9`` | ``-Python-3.7.2`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CrossTalkZ.md b/docs/version-specific/supported-software/c/CrossTalkZ.md deleted file mode 100644 index ea6b01b0b6..0000000000 --- a/docs/version-specific/supported-software/c/CrossTalkZ.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CrossTalkZ - -CrossTalkZ is a statistical method and software to assess the significance of crosstalk enrichment between pairs of gene or protein groups in large biological networks. - -*homepage*: - -version | toolchain ---------|---------- -``1.4`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CryptoMiniSat.md b/docs/version-specific/supported-software/c/CryptoMiniSat.md deleted file mode 100644 index 735f4a042f..0000000000 --- a/docs/version-specific/supported-software/c/CryptoMiniSat.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CryptoMiniSat - -CryptoMiniSat is an advanced SAT solver - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``5.0.1`` | ``-Python-2.7.12`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CrystFEL.md b/docs/version-specific/supported-software/c/CrystFEL.md deleted file mode 100644 index 73dab904a4..0000000000 --- a/docs/version-specific/supported-software/c/CrystFEL.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CrystFEL - -CrystFEL is a suite of programs for processing diffraction data acquired "serially" in a "snapshot" manner, such as when using the technique of Serial Femtosecond Crystallography (SFX) with a free-electron laser source. - -*homepage*: - -version | toolchain ---------|---------- -``0.8.0`` | ``foss/2019a`` -``0.8.0`` | ``intel/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CuCLARK.md b/docs/version-specific/supported-software/c/CuCLARK.md deleted file mode 100644 index c413dc22d8..0000000000 --- a/docs/version-specific/supported-software/c/CuCLARK.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CuCLARK - -Metagenomic classifier for CUDA-enabled GPUs - -*homepage*: - -version | toolchain ---------|---------- -``1.1`` | ``fosscuda/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CuPy.md b/docs/version-specific/supported-software/c/CuPy.md index 64bb84619f..65cc42f7d7 100644 --- a/docs/version-specific/supported-software/c/CuPy.md +++ b/docs/version-specific/supported-software/c/CuPy.md @@ -13,7 +13,6 @@ version | versionsuffix | toolchain ``11.4.0`` | ``-CUDA-11.4.1`` | ``foss/2021b`` ``12.1.0`` | ``-CUDA-12.0.0`` | ``foss/2022b`` ``13.0.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` -``8.2.0`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` ``8.5.0`` | | ``fosscuda/2020b`` diff --git a/docs/version-specific/supported-software/c/Cube.md b/docs/version-specific/supported-software/c/Cube.md deleted file mode 100644 index 4a0067d989..0000000000 --- a/docs/version-specific/supported-software/c/Cube.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Cube - -Cube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. - -*homepage*: - -version | toolchain ---------|---------- -``4.3.4`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CubeGUI.md b/docs/version-specific/supported-software/c/CubeGUI.md index a96fd4fb7f..c730ace70b 100644 --- a/docs/version-specific/supported-software/c/CubeGUI.md +++ b/docs/version-specific/supported-software/c/CubeGUI.md @@ -10,11 +10,11 @@ Cube, which is used as performance report explorer for Scalasca and Score-P, is version | toolchain --------|---------- -``4.4.4`` | ``GCCcore/8.2.0`` -``4.4.4`` | ``GCCcore/9.3.0`` ``4.6`` | ``GCCcore/10.2.0`` ``4.6`` | ``GCCcore/10.3.0`` ``4.8`` | ``GCCcore/11.3.0`` +``4.8.2`` | ``GCCcore/13.2.0`` +``4.8.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CubeLib.md b/docs/version-specific/supported-software/c/CubeLib.md index 1e01610d1c..04da2a1e09 100644 --- a/docs/version-specific/supported-software/c/CubeLib.md +++ b/docs/version-specific/supported-software/c/CubeLib.md @@ -10,16 +10,15 @@ Cube, which is used as performance report explorer for Scalasca and Score-P, is version | toolchain --------|---------- -``4.4.4`` | ``GCCcore/8.2.0`` -``4.4.4`` | ``GCCcore/8.3.0`` -``4.4.4`` | ``GCCcore/9.3.0`` ``4.6`` | ``GCCcore/10.2.0`` ``4.6`` | ``GCCcore/10.3.0`` ``4.8`` | ``GCCcore/11.2.0`` ``4.8`` | ``GCCcore/11.3.0`` ``4.8.1`` | ``GCCcore/12.2.0`` ``4.8.1`` | ``GCCcore/12.3.0`` +``4.8.2`` | ``GCCcore/11.3.0`` ``4.8.2`` | ``GCCcore/12.2.0`` +``4.8.2`` | ``GCCcore/12.3.0`` ``4.8.2`` | ``GCCcore/13.2.0`` ``4.8.2`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/c/CubeWriter.md b/docs/version-specific/supported-software/c/CubeWriter.md index b036cfbc51..1b9a5a34de 100644 --- a/docs/version-specific/supported-software/c/CubeWriter.md +++ b/docs/version-specific/supported-software/c/CubeWriter.md @@ -11,16 +11,15 @@ Cube, which is used as performance report explorer for Scalasca and Score-P, is version | toolchain --------|---------- ``4.4.3`` | ``GCCcore/10.2.0`` -``4.4.3`` | ``GCCcore/8.2.0`` -``4.4.3`` | ``GCCcore/8.3.0`` -``4.4.3`` | ``GCCcore/9.3.0`` ``4.6`` | ``GCCcore/10.2.0`` ``4.6`` | ``GCCcore/10.3.0`` ``4.8`` | ``GCCcore/11.2.0`` ``4.8`` | ``GCCcore/11.3.0`` ``4.8.1`` | ``GCCcore/12.2.0`` ``4.8.1`` | ``GCCcore/12.3.0`` +``4.8.2`` | ``GCCcore/11.3.0`` ``4.8.2`` | ``GCCcore/12.2.0`` +``4.8.2`` | ``GCCcore/12.3.0`` ``4.8.2`` | ``GCCcore/13.2.0`` ``4.8.2`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/c/Cufflinks.md b/docs/version-specific/supported-software/c/Cufflinks.md index 4180c91ced..6c40ebcec2 100644 --- a/docs/version-specific/supported-software/c/Cufflinks.md +++ b/docs/version-specific/supported-software/c/Cufflinks.md @@ -10,15 +10,9 @@ Transcript assembly, differential expression, and differential regulation for RN version | toolchain --------|---------- -``2.2.1`` | ``foss/2016a`` -``2.2.1`` | ``foss/2016b`` -``2.2.1`` | ``foss/2018b`` -``2.2.1`` | ``gompi/2019b`` -``2.2.1`` | ``intel/2017b`` -``2.2.1`` | ``intel/2018a`` ``20190706`` | ``GCC/10.2.0`` ``20190706`` | ``GCC/11.2.0`` -``20190706`` | ``gompi/2019a`` +``20190706`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/Cython.md b/docs/version-specific/supported-software/c/Cython.md index 344c0b1739..fedf563d24 100644 --- a/docs/version-specific/supported-software/c/Cython.md +++ b/docs/version-specific/supported-software/c/Cython.md @@ -4,23 +4,15 @@ search: --- # Cython -The Cython language makes writing C extensions for the Python language as easy as Python itself. Cython is a source code translator based on the well-known Pyrex, but supports more cutting edge functionality and optimizations. +Cython is an optimising static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex). -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``0.23.4`` | ``-Python-2.7.10`` | ``gimkl/2.11.5`` -``0.24.1`` | ``-Python-2.7.11`` | ``foss/2016a`` -``0.25.2`` | ``-Python-2.7.12`` | ``foss/2016b`` -``0.25.2`` | ``-Python-3.6.4`` | ``intel/2018a`` -``0.27.3`` | ``-Python-2.7.15`` | ``GCCcore/8.2.0`` -``0.29.10`` | ``-Python-2.7.14`` | ``foss/2017b`` -``0.29.10`` | ``-Python-3.6.3`` | ``foss/2017b`` -``0.29.10`` | ``-Python-2.7.14`` | ``intel/2017b`` -``0.29.10`` | ``-Python-3.6.3`` | ``intel/2017b`` ``0.29.22`` | | ``GCCcore/10.2.0`` ``0.29.33`` | | ``GCCcore/11.3.0`` +``0.29.37`` | ``-Python-2.7.18`` | ``GCCcore/12.3.0`` ``3.0.10`` | | ``GCCcore/13.2.0`` ``3.0.10`` | | ``GCCcore/13.3.0`` ``3.0.7`` | | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/c/cDNA_Cupcake.md b/docs/version-specific/supported-software/c/cDNA_Cupcake.md index 1440b285ca..d607e80f25 100644 --- a/docs/version-specific/supported-software/c/cDNA_Cupcake.md +++ b/docs/version-specific/supported-software/c/cDNA_Cupcake.md @@ -8,11 +8,9 @@ cDNA_Cupcake is a miscellaneous collection of Python and R scripts used for anal *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``24.2.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``26.0.0`` | | ``foss/2021a`` -``5.8`` | ``-Python-2.7.14`` | ``intel/2018a`` +version | toolchain +--------|---------- +``26.0.0`` | ``foss/2021a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/cURL.md b/docs/version-specific/supported-software/c/cURL.md index b7a35daf28..dc2ee0deca 100644 --- a/docs/version-specific/supported-software/c/cURL.md +++ b/docs/version-specific/supported-software/c/cURL.md @@ -4,39 +4,12 @@ search: --- # cURL -libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more. +libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more. -*homepage*: +*homepage*: version | toolchain --------|---------- -``7.33.0`` | ``GCC/4.8.2`` -``7.34.0`` | ``GCC/4.8.2`` -``7.40.0`` | ``GCC/4.9.2`` -``7.46.0`` | ``iomkl/2016.07`` -``7.46.0`` | ``iomkl/2016.09-GCC-4.9.3-2.25`` -``7.47.0`` | ``foss/2016a`` -``7.47.0`` | ``intel/2016.02-GCC-4.9`` -``7.47.0`` | ``intel/2016a`` -``7.49.1`` | ``GCCcore/5.4.0`` -``7.49.1`` | ``foss/2016a`` -``7.49.1`` | ``foss/2016b`` -``7.49.1`` | ``intel/2016a`` -``7.49.1`` | ``intel/2016b`` -``7.52.1`` | ``gimkl/2017a`` -``7.52.1`` | ``intel/2016b`` -``7.53.1`` | ``GCCcore/6.3.0`` -``7.54.0`` | ``GCCcore/6.3.0`` -``7.55.1`` | ``GCCcore/6.4.0`` -``7.56.0`` | ``GCCcore/6.4.0`` -``7.56.1`` | ``GCCcore/6.4.0`` -``7.58.0`` | ``GCCcore/6.4.0`` -``7.59.0`` | ``GCCcore/6.4.0`` -``7.60.0`` | ``GCCcore/7.2.0`` -``7.60.0`` | ``GCCcore/7.3.0`` -``7.63.0`` | ``GCCcore/8.2.0`` -``7.66.0`` | ``GCCcore/8.3.0`` -``7.69.1`` | ``GCCcore/9.3.0`` ``7.72.0`` | ``GCCcore/10.2.0`` ``7.76.0`` | ``GCCcore/10.3.0`` ``7.78.0`` | ``GCCcore/11.2.0`` @@ -45,6 +18,7 @@ version | toolchain ``7.86.0`` | ``GCCcore/12.2.0`` ``8.0.1`` | ``GCCcore/12.3.0`` ``8.0.1`` | ``GCCcore/13.1.0`` +``8.11.1`` | ``GCCcore/14.2.0`` ``8.3.0`` | ``GCCcore/13.2.0`` ``8.7.1`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/c/cadaver.md b/docs/version-specific/supported-software/c/cadaver.md deleted file mode 100644 index f03d32a3fd..0000000000 --- a/docs/version-specific/supported-software/c/cadaver.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# cadaver - -cadaver is a command-line WebDAV client for Unix. - -*homepage*: - -version | toolchain ---------|---------- -``0.23.3`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/cairo.md b/docs/version-specific/supported-software/c/cairo.md index 4bee7976b8..317dd2185c 100644 --- a/docs/version-specific/supported-software/c/cairo.md +++ b/docs/version-specific/supported-software/c/cairo.md @@ -6,33 +6,18 @@ search: Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.14.10`` | | ``GCCcore/6.3.0`` -``1.14.10`` | | ``GCCcore/6.4.0`` -``1.14.10`` | | ``intel/2017b`` -``1.14.12`` | | ``GCCcore/6.4.0`` -``1.14.12`` | | ``GCCcore/7.3.0`` -``1.14.6`` | ``-GLib-2.48.0`` | ``foss/2016a`` -``1.14.6`` | | ``foss/2016a`` -``1.14.6`` | | ``foss/2016b`` -``1.14.6`` | ``-GLib-2.48.0`` | ``intel/2016a`` -``1.14.6`` | | ``intel/2016a`` -``1.14.6`` | | ``intel/2016b`` -``1.14.8`` | | ``intel/2017a`` -``1.16.0`` | | ``GCCcore/10.2.0`` -``1.16.0`` | | ``GCCcore/10.3.0`` -``1.16.0`` | | ``GCCcore/11.2.0`` -``1.16.0`` | | ``GCCcore/8.2.0`` -``1.16.0`` | | ``GCCcore/8.3.0`` -``1.16.0`` | | ``GCCcore/9.3.0`` -``1.17.4`` | | ``GCCcore/11.3.0`` -``1.17.4`` | | ``GCCcore/12.2.0`` -``1.17.8`` | | ``GCCcore/12.3.0`` -``1.18.0`` | | ``GCCcore/13.2.0`` -``1.18.0`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``1.16.0`` | ``GCCcore/10.2.0`` +``1.16.0`` | ``GCCcore/10.3.0`` +``1.16.0`` | ``GCCcore/11.2.0`` +``1.17.4`` | ``GCCcore/11.3.0`` +``1.17.4`` | ``GCCcore/12.2.0`` +``1.17.8`` | ``GCCcore/12.3.0`` +``1.18.0`` | ``GCCcore/13.2.0`` +``1.18.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/cairomm.md b/docs/version-specific/supported-software/c/cairomm.md index 057567bd07..f36426f3c8 100644 --- a/docs/version-specific/supported-software/c/cairomm.md +++ b/docs/version-specific/supported-software/c/cairomm.md @@ -10,8 +10,6 @@ The Cairomm package provides a C++ interface to Cairo. version | toolchain --------|---------- -``1.12.2`` | ``GCCcore/6.4.0`` -``1.12.2`` | ``GCCcore/7.3.0`` ``1.16.2`` | ``GCC/11.3.0`` ``1.16.2`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/c/canu.md b/docs/version-specific/supported-software/c/canu.md index 8adea8eec2..85c29e07fc 100644 --- a/docs/version-specific/supported-software/c/canu.md +++ b/docs/version-specific/supported-software/c/canu.md @@ -4,21 +4,13 @@ search: --- # canu -Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION). Canu is a hierarchical assembly pipeline which runs in four steps: Detect overlaps in high-noise sequences using MHAP Generate corrected sequence consensus Trim corrected sequences Assemble trimmed corrected sequences +Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.4`` | | ``foss/2016b`` -``1.7`` | | ``intel/2018a`` -``1.8`` | ``-Perl-5.28.1`` | ``GCCcore/8.2.0`` -``1.8`` | ``-Perl-5.26.0`` | ``foss/2017b`` -``1.8`` | ``-Perl-5.28.0`` | ``foss/2018b`` -``1.8`` | ``-Perl-5.26.0`` | ``intel/2017b`` -``1.9`` | ``-Java-11`` | ``GCCcore/8.3.0`` ``2.1.1`` | | ``GCCcore/10.2.0`` -``2.1.1`` | ``-Java-11`` | ``GCCcore/9.3.0`` ``2.2`` | | ``GCC/12.2.0`` ``2.2`` | ``-Java-11`` | ``GCCcore/10.3.0`` ``2.2`` | | ``GCCcore/10.3.0`` diff --git a/docs/version-specific/supported-software/c/carputils.md b/docs/version-specific/supported-software/c/carputils.md index 3e48586e65..6845e3e88a 100644 --- a/docs/version-specific/supported-software/c/carputils.md +++ b/docs/version-specific/supported-software/c/carputils.md @@ -8,10 +8,9 @@ carputils is a Python framework for generating and running openCARP examples. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``20200915`` | ``-Python-3.8.2`` | ``foss/2020a`` -``20210513`` | | ``foss/2020b`` +version | toolchain +--------|---------- +``20210513`` | ``foss/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/causallift.md b/docs/version-specific/supported-software/c/causallift.md deleted file mode 100644 index ba9f56c9c0..0000000000 --- a/docs/version-specific/supported-software/c/causallift.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# causallift - -CausalLift: Python package for Uplift Modeling in real-world business; applicable for both A/B testing and observational data - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.6`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/causalml.md b/docs/version-specific/supported-software/c/causalml.md deleted file mode 100644 index f0350ff6e0..0000000000 --- a/docs/version-specific/supported-software/c/causalml.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# causalml - -Causal ML: A Python Package for Uplift Modeling and Causal Inference with ML - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.3.0-20180610`` | ``-Python-3.7.2`` | ``foss/2019a`` -``0.8.0-20200909`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/ccache.md b/docs/version-specific/supported-software/c/ccache.md index 3805f79290..1e500204aa 100644 --- a/docs/version-specific/supported-software/c/ccache.md +++ b/docs/version-specific/supported-software/c/ccache.md @@ -4,27 +4,22 @@ search: --- # ccache -ccache-3.1.9: Cache for C/C++ compilers +Ccache (or “ccache”) is a compiler cache. It speeds up recompilation by caching previous compilations and detecting when the same compilation is being done again -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.2.5`` | | ``system`` -``3.3.1`` | | ``system`` -``3.3.3`` | | ``system`` -``3.3.4`` | ``-f90`` | ``system`` -``3.7.11`` | | ``system`` -``4.10.2`` | | ``GCCcore/13.3.0`` -``4.2.1`` | | ``system`` -``4.6.1`` | | ``GCCcore/11.2.0`` -``4.6.3`` | | ``GCCcore/11.3.0`` -``4.6.3`` | | ``system`` -``4.7.5`` | | ``system`` -``4.8.3`` | | ``system`` -``4.9`` | | ``GCCcore/12.2.0`` -``4.9`` | | ``GCCcore/12.3.0`` -``4.9`` | | ``GCCcore/13.2.0`` +version | toolchain +--------|---------- +``4.10.2`` | ``GCCcore/13.3.0`` +``4.2.1`` | ``system`` +``4.6.1`` | ``GCCcore/11.2.0`` +``4.6.3`` | ``GCCcore/11.3.0`` +``4.6.3`` | ``system`` +``4.7.5`` | ``system`` +``4.8.3`` | ``system`` +``4.9`` | ``GCCcore/12.2.0`` +``4.9`` | ``GCCcore/12.3.0`` +``4.9`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/cclib.md b/docs/version-specific/supported-software/c/cclib.md index 108dea75cb..ed6a75fceb 100644 --- a/docs/version-specific/supported-software/c/cclib.md +++ b/docs/version-specific/supported-software/c/cclib.md @@ -4,17 +4,14 @@ search: --- # cclib -cclib is a Python library that provides parsers for computational chemistry log files. It alsoprovides a platform to implement algorithms in a package-independent manner. +cclib is a Python library that provides parsers for computational chemistry log files. It also provides a platform to implement algorithms in a package-independent manner. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.5`` | ``-Python-3.5.2`` | ``foss/2016b`` -``1.6.3`` | ``-Python-3.8.2`` | ``foss/2020a`` -``1.6.3`` | ``-Python-3.8.2`` | ``intel/2020a`` -``1.7.2`` | | ``foss/2021b`` -``1.8`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``1.7.2`` | ``foss/2021b`` +``1.8`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/cctools.md b/docs/version-specific/supported-software/c/cctools.md deleted file mode 100644 index 1ec0c39a95..0000000000 --- a/docs/version-specific/supported-software/c/cctools.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# cctools - -The Cooperating Computing Tools (CCTools) help you to design and deploy scalable applications that run on hundreds or thousands of machines at once. - -*homepage*: - -version | toolchain ---------|---------- -``7.0.22`` | ``GCCcore/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/cdbfasta.md b/docs/version-specific/supported-software/c/cdbfasta.md deleted file mode 100644 index 5e66ab893f..0000000000 --- a/docs/version-specific/supported-software/c/cdbfasta.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# cdbfasta - -Fasta file indexing and retrival tool - -*homepage*: - -version | toolchain ---------|---------- -``0.99`` | ``GCC/8.3.0`` -``0.99`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``0.99`` | ``iccifort/2019.5.281`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/cddlib.md b/docs/version-specific/supported-software/c/cddlib.md index 463bd2e5a0..d8088c4124 100644 --- a/docs/version-specific/supported-software/c/cddlib.md +++ b/docs/version-specific/supported-software/c/cddlib.md @@ -10,8 +10,6 @@ An efficient implementation of the Double Description Method version | toolchain --------|---------- -``0.94i`` | ``GCCcore/8.2.0`` -``0.94j`` | ``GCCcore/8.3.0`` ``0.94m`` | ``GCCcore/11.3.0`` ``0.94m`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/c/cdsapi.md b/docs/version-specific/supported-software/c/cdsapi.md index 71b7be54ac..ab30a71016 100644 --- a/docs/version-specific/supported-software/c/cdsapi.md +++ b/docs/version-specific/supported-software/c/cdsapi.md @@ -8,12 +8,9 @@ Climate Data Store API *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1.4`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.1.4`` | | ``foss/2019a`` -``0.3.0`` | | ``GCCcore/9.3.0`` -``0.5.1`` | | ``GCCcore/11.3.0`` +version | toolchain +--------|---------- +``0.5.1`` | ``GCCcore/11.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/cell2location.md b/docs/version-specific/supported-software/c/cell2location.md index a1fc552daf..3424aaca80 100644 --- a/docs/version-specific/supported-software/c/cell2location.md +++ b/docs/version-specific/supported-software/c/cell2location.md @@ -4,7 +4,7 @@ search: --- # cell2location -Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model) +Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model) *homepage*: diff --git a/docs/version-specific/supported-software/c/centerline.md b/docs/version-specific/supported-software/c/centerline.md index fc0f76651c..e0b8bf29a7 100644 --- a/docs/version-specific/supported-software/c/centerline.md +++ b/docs/version-specific/supported-software/c/centerline.md @@ -4,7 +4,7 @@ search: --- # centerline -Roads, rivers and similar linear structures are often represented by long and complex polygons. Since one of the most important attributes of a linear structure is its length, extracting that attribute from a polygon can prove to be more or less difficult. This library tries to solve this problem by creating the the polygon's centerline using the Voronoi diagram. For more info on how to use this package, see the official documentation. +Roads, rivers and similar linear structures are often represented by long and complex polygons. Since one of the most important attributes of a linear structure is its length, extracting that attribute from a polygon can prove to be more or less difficult. This library tries to solve this problem by creating the the polygon's centerline using the Voronoi diagram. For more info on how to use this package, see the official documentation. *homepage*: diff --git a/docs/version-specific/supported-software/c/cftime.md b/docs/version-specific/supported-software/c/cftime.md deleted file mode 100644 index 1f479d5d19..0000000000 --- a/docs/version-specific/supported-software/c/cftime.md +++ /dev/null @@ -1,21 +0,0 @@ ---- -search: - boost: 0.5 ---- -# cftime - -Time-handling functionality from netcdf4-python - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.0`` | ``-Python-3.6.4`` | ``intel/2018a`` -``1.0.0b1`` | ``-Python-3.6.2`` | ``foss/2017b`` -``1.0.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.0.1`` | ``-Python-2.7.15`` | ``intel/2018b`` -``1.0.1`` | ``-Python-3.6.6`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/cget.md b/docs/version-specific/supported-software/c/cget.md deleted file mode 100644 index b89a3563ec..0000000000 --- a/docs/version-specific/supported-software/c/cget.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# cget - -Cmake package retrieval. This can be used to download and install cmake packages - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1.6`` | ``-Python-3.6.4`` | ``foss/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/charm-gems.md b/docs/version-specific/supported-software/c/charm-gems.md index 63cdded459..6d1022a39a 100644 --- a/docs/version-specific/supported-software/c/charm-gems.md +++ b/docs/version-specific/supported-software/c/charm-gems.md @@ -4,7 +4,7 @@ search: --- # charm-gems -This repository contains the gems C++ code and python bindings used in Freesurfer's Sequence-Adaptive Multimodal SEGmentation (SAMSEG) and in SimNIBS 4.0 Complete Head Anatomy Reconstruction Method (CHARM) to create individualized head models for electric field simulations. +This repository contains the gems C++ code and python bindings used in Freesurfer's Sequence-Adaptive Multimodal SEGmentation (SAMSEG) and in SimNIBS 4.0 Complete Head Anatomy Reconstruction Method (CHARM) to create individualized head models for electric field simulations. *homepage*: diff --git a/docs/version-specific/supported-software/c/chewBBACA.md b/docs/version-specific/supported-software/c/chewBBACA.md index 552634babb..f59e504387 100644 --- a/docs/version-specific/supported-software/c/chewBBACA.md +++ b/docs/version-specific/supported-software/c/chewBBACA.md @@ -4,14 +4,14 @@ search: --- # chewBBACA -chewBBACA stands for "BSR-Based Allele Calling Algorithm". chewBBACA is a comprehensive pipeline including a set of functions for the creation and validation of whole genome and core genome MultiLocus Sequence Typing (wg/cgMLST) schemas, providing an allele calling algorithm based on Blast Score Ratio that can be run in multiprocessor settings and a set of functions to visualize and validate allele variation in the loci. +chewBBACA is a software suite for the creation and evaluation of core genome and whole genome MultiLocus Sequence Typing (cg/wgMLST) schemas and results. The "BBACA" stands for "BSR-Based Allele Calling Algorithm". BSR stands for BLAST Score Ratio as proposed by Rasko DA et al. The "chew" part adds extra coolness to the name and could be thought of as "Comprehensive and Highly Efficient Workflow". *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.5.5`` | ``-Python-3.8.2`` | ``intel/2020a`` -``3.3.9`` | | ``foss/2022b`` +version | toolchain +--------|---------- +``3.3.10`` | ``foss/2023a`` +``3.3.9`` | ``foss/2022b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/chi2comb.md b/docs/version-specific/supported-software/c/chi2comb.md deleted file mode 100644 index 94207b3023..0000000000 --- a/docs/version-specific/supported-software/c/chi2comb.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# chi2comb - -Cumulative density function of linear combinations of independent chi-square random variables and a standard Normal distribution. As of now, this is basically a repackaging of the davies function implemented in the CompQuadForm library for R. - -*homepage*: - -version | toolchain ---------|---------- -``0.0.3`` | ``GCCcore/7.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/cisDIVERSITY.md b/docs/version-specific/supported-software/c/cisDIVERSITY.md new file mode 100644 index 0000000000..dab0f63201 --- /dev/null +++ b/docs/version-specific/supported-software/c/cisDIVERSITY.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# cisDIVERSITY + +A module discovery tool used for finding diverse sequence architectures, each one characterized by presence or absence of de novo motifs. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``1.1`` | ``-Python-2.7.18`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/c/cisTEM.md b/docs/version-specific/supported-software/c/cisTEM.md deleted file mode 100644 index fdab14cbba..0000000000 --- a/docs/version-specific/supported-software/c/cisTEM.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# cisTEM - -cisTEM is user-friendly software to process cryo-EM images of macromolecular complexes and obtain high-resolution 3D reconstructions from them. - -*homepage*: - -version | toolchain ---------|---------- -``1.0.0-beta`` | ``foss/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/clearml.md b/docs/version-specific/supported-software/c/clearml.md new file mode 100644 index 0000000000..52cd369f23 --- /dev/null +++ b/docs/version-specific/supported-software/c/clearml.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# clearml + +Auto-Magical CI/CD to streamline your AI workload. Experiment Management, Data Management, Pipeline, Orchestration, Scheduling & Serving in one MLOps/LLMOps solution. + +*homepage*: + +version | toolchain +--------|---------- +``1.16.5`` | ``foss/2023b`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/a/ALLPATHS-LG.md b/docs/version-specific/supported-software/c/cmcrameri.md similarity index 80% rename from docs/version-specific/supported-software/a/ALLPATHS-LG.md rename to docs/version-specific/supported-software/c/cmcrameri.md index 3d30d02fa5..7b624201a1 100644 --- a/docs/version-specific/supported-software/a/ALLPATHS-LG.md +++ b/docs/version-specific/supported-software/c/cmcrameri.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# ALLPATHS-LG +# cmcrameri -ALLPATHS-LG, the new short read genome assembler. +Python wrapper around Fabio Crameri's perceptually uniform colormaps. -*homepage*: +*homepage*: version | toolchain --------|---------- -``52488`` | ``foss/2016a`` +``1.9`` | ``gfbf/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/cmocean.md b/docs/version-specific/supported-software/c/cmocean.md index bcf097bc24..2d577d5acf 100644 --- a/docs/version-specific/supported-software/c/cmocean.md +++ b/docs/version-specific/supported-software/c/cmocean.md @@ -4,7 +4,7 @@ search: --- # cmocean -This package contains colormaps for commonly-used oceanographic variables. Most of the colormaps started from matplotlib colormaps, but have now been adjusted using the viscm tool to be perceptually uniform. +This package contains colormaps for commonly-used oceanographic variables. Most of the colormaps started from matplotlib colormaps, but have now been adjusted using the viscm tool to be perceptually uniform. *homepage*: diff --git a/docs/version-specific/supported-software/c/cnvpytor.md b/docs/version-specific/supported-software/c/cnvpytor.md new file mode 100644 index 0000000000..32a95d275d --- /dev/null +++ b/docs/version-specific/supported-software/c/cnvpytor.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# cnvpytor + +A tool for copy number variation detection and analysis from read depth and allele imbalance in whole-genome sequencing + +*homepage*: + +version | toolchain +--------|---------- +``1.3.1`` | ``foss/2024a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/c/code-cli.md b/docs/version-specific/supported-software/c/code-cli.md index f4d48cfef4..c4b55dcd08 100644 --- a/docs/version-specific/supported-software/c/code-cli.md +++ b/docs/version-specific/supported-software/c/code-cli.md @@ -4,13 +4,14 @@ search: --- # code-cli -Visual Studio Code is a lightweight but powerful source code editor which runs on your desktop and is available for Windows, macOS and Linux. It comes with built-in support for JavaScript, TypeScript and Node.js and has a rich ecosystem of extensions for other languages and runtimes (such as C++, C#, Java, Python, PHP, Go, .NET). Begin your journey with VS Code with these introductory videos. +Visual Studio Code is a lightweight but powerful source code editor which runs on your desktop and is available for Windows, macOS and Linux. It comes with built-in support for JavaScript, TypeScript and Node.js and has a rich ecosystem of extensions for other languages and runtimes (such as C++, C#, Java, Python, PHP, Go, .NET). Begin your journey with VS Code with these introductory videos. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- ``1.85.1`` | ``-x64`` | ``system`` +``1.93.1`` | ``-x64`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/code-server.md b/docs/version-specific/supported-software/c/code-server.md index 27b6823572..15fe9ec614 100644 --- a/docs/version-specific/supported-software/c/code-server.md +++ b/docs/version-specific/supported-software/c/code-server.md @@ -17,6 +17,8 @@ version | toolchain ``4.89.1`` | ``system`` ``4.9.1`` | ``system`` ``4.90.2`` | ``system`` +``4.93.1`` | ``system`` +``4.97.2`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ARWEN.md b/docs/version-specific/supported-software/c/columba.md similarity index 82% rename from docs/version-specific/supported-software/a/ARWEN.md rename to docs/version-specific/supported-software/c/columba.md index 2441f2602b..3f259ff653 100644 --- a/docs/version-specific/supported-software/a/ARWEN.md +++ b/docs/version-specific/supported-software/c/columba.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# ARWEN +# columba -ARWEN, tRNA detection in metazoan mitochondrial sequences +Fast Approximate Pattern Matching using Search Schemes -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.2.3`` | ``GCCcore/7.3.0`` +``1.2-20240326`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/configparser.md b/docs/version-specific/supported-software/c/configparser.md deleted file mode 100644 index 5f38d76f1c..0000000000 --- a/docs/version-specific/supported-software/c/configparser.md +++ /dev/null @@ -1,21 +0,0 @@ ---- -search: - boost: 0.5 ---- -# configparser - -configparser is a Python library that brings the updated configparser from Python 3.5 to Python 2.6-3.5 - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.5.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``3.5.0`` | ``-Python-2.7.12`` | ``foss/2016b`` -``3.5.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``3.5.0`` | ``-Python-3.5.2`` | ``intel/2016b`` -``3.5.0`` | ``-Python-3.6.3`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/configurable-http-proxy.md b/docs/version-specific/supported-software/c/configurable-http-proxy.md index 8cc8128ae2..53c56b7589 100644 --- a/docs/version-specific/supported-software/c/configurable-http-proxy.md +++ b/docs/version-specific/supported-software/c/configurable-http-proxy.md @@ -8,16 +8,14 @@ HTTP proxy for node.js including a REST API for updating the routing table. Dev *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.3.0`` | ``-nodejs-4.4.7`` | ``foss/2016a`` -``3.1.1`` | ``-nodejs-8.9.4`` | ``foss/2017a`` -``4.2.1`` | | ``GCCcore/10.2.0`` -``4.4.0`` | | ``GCCcore/10.3.0`` -``4.5.3`` | | ``GCCcore/11.3.0`` -``4.5.5`` | | ``GCCcore/12.2.0`` -``4.5.6`` | | ``GCCcore/12.3.0`` -``4.6.1`` | | ``GCCcore/13.2.0`` +version | toolchain +--------|---------- +``4.2.1`` | ``GCCcore/10.2.0`` +``4.4.0`` | ``GCCcore/10.3.0`` +``4.5.3`` | ``GCCcore/11.3.0`` +``4.5.5`` | ``GCCcore/12.2.0`` +``4.5.6`` | ``GCCcore/12.3.0`` +``4.6.1`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/cookiecutter.md b/docs/version-specific/supported-software/c/cookiecutter.md new file mode 100644 index 0000000000..d609d11b1f --- /dev/null +++ b/docs/version-specific/supported-software/c/cookiecutter.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# cookiecutter + +A command-line utility that creates projects from project templates. E.g. creating a Python package project from a Python package project template. + +*homepage*: + +version | toolchain +--------|---------- +``2.6.0`` | ``GCCcore/13.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/c/cooler.md b/docs/version-specific/supported-software/c/cooler.md index 5c454eb7c6..ce15135fc1 100644 --- a/docs/version-specific/supported-software/c/cooler.md +++ b/docs/version-specific/supported-software/c/cooler.md @@ -11,6 +11,7 @@ Cooler is a support library for a storage format, also called cooler, used to st version | toolchain --------|---------- ``0.10.2`` | ``foss/2023a`` +``0.10.2`` | ``foss/2023b`` ``0.9.1`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/c/core-counter.md b/docs/version-specific/supported-software/c/core-counter.md deleted file mode 100644 index b53627b103..0000000000 --- a/docs/version-specific/supported-software/c/core-counter.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# core-counter - -Tool to check available cores and OMP threads - -*homepage*: - -version | toolchain ---------|---------- -``1.1.1`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/corner.md b/docs/version-specific/supported-software/c/corner.md index 2bb61b255a..11c38fadb1 100644 --- a/docs/version-specific/supported-software/c/corner.md +++ b/docs/version-specific/supported-software/c/corner.md @@ -8,11 +8,9 @@ Make some beautiful corner plots. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0.1`` | ``-Python-2.7.15`` | ``foss/2019a`` -``2.0.1`` | ``-Python-3.7.2`` | ``foss/2019a`` -``2.2.2`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``2.2.2`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/coverage.md b/docs/version-specific/supported-software/c/coverage.md index 33cb9b15eb..2bfd168376 100644 --- a/docs/version-specific/supported-software/c/coverage.md +++ b/docs/version-specific/supported-software/c/coverage.md @@ -8,15 +8,14 @@ Coverage.py is a tool for measuring code coverage of Python programs. It monito *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.5.1`` | ``-Python-2.7.14`` | ``intel/2017b`` -``5.5`` | | ``GCCcore/10.2.0`` -``5.5`` | | ``GCCcore/10.3.0`` -``7.2.3`` | | ``GCCcore/12.2.0`` -``7.2.3`` | | ``GCCcore/12.3.0`` -``7.2.7`` | | ``GCCcore/11.3.0`` -``7.4.4`` | | ``GCCcore/13.2.0`` +version | toolchain +--------|---------- +``5.5`` | ``GCCcore/10.2.0`` +``5.5`` | ``GCCcore/10.3.0`` +``7.2.3`` | ``GCCcore/12.2.0`` +``7.2.3`` | ``GCCcore/12.3.0`` +``7.2.7`` | ``GCCcore/11.3.0`` +``7.4.4`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/cowsay.md b/docs/version-specific/supported-software/c/cowsay.md deleted file mode 100644 index 1358f08864..0000000000 --- a/docs/version-specific/supported-software/c/cowsay.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# cowsay - -Configurable talking characters in ASCII art - -*homepage*: - -version | toolchain ---------|---------- -``3.04`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/cp2k-input-tools.md b/docs/version-specific/supported-software/c/cp2k-input-tools.md new file mode 100644 index 0000000000..79ba880692 --- /dev/null +++ b/docs/version-specific/supported-software/c/cp2k-input-tools.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# cp2k-input-tools + +Fully validating pure-python CP2K input file parsers including preprocessing capabilities + +*homepage*: + +version | toolchain +--------|---------- +``0.9.1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/c/cpu_features.md b/docs/version-specific/supported-software/c/cpu_features.md index dc98dbe1e7..5f4f1c32fe 100644 --- a/docs/version-specific/supported-software/c/cpu_features.md +++ b/docs/version-specific/supported-software/c/cpu_features.md @@ -11,6 +11,7 @@ A cross-platform C library to retrieve CPU features (such as available instructi version | toolchain --------|---------- ``0.6.0`` | ``GCCcore/10.2.0`` +``0.9.0`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/cram.md b/docs/version-specific/supported-software/c/cram.md deleted file mode 100644 index 2539fa5e3f..0000000000 --- a/docs/version-specific/supported-software/c/cram.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# cram - -Cram is a functional testing framework for command line applications. - -*homepage*: - -version | toolchain ---------|---------- -``0.7`` | ``GCCcore/8.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/cramtools.md b/docs/version-specific/supported-software/c/cramtools.md deleted file mode 100644 index c71fc4fa85..0000000000 --- a/docs/version-specific/supported-software/c/cramtools.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# cramtools - -CRAMTools is a set of Java tools and APIs for efficient compression of sequence read data. Although this is intended as a stable version the code is released as early access. Parts of the CRAMTools are experimental and may not be supported in the future. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0`` | ``-Java-1.7.0_80`` | ``system`` -``3.0`` | ``-Java-1.7.0_80`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/crb-blast.md b/docs/version-specific/supported-software/c/crb-blast.md index 9f0f204e86..b733d436cc 100644 --- a/docs/version-specific/supported-software/c/crb-blast.md +++ b/docs/version-specific/supported-software/c/crb-blast.md @@ -8,13 +8,11 @@ Conditional Reciprocal Best BLAST - high confidence ortholog assignment. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.6.9`` | | ``GCC/12.3.0`` -``0.6.9`` | ``-Ruby-2.6.1`` | ``foss/2018b`` -``0.6.9`` | | ``gompi/2021a`` -``0.6.9`` | | ``gompi/2021b`` -``0.6.9`` | | ``intel/2017a`` +version | toolchain +--------|---------- +``0.6.9`` | ``GCC/12.3.0`` +``0.6.9`` | ``gompi/2021a`` +``0.6.9`` | ``gompi/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/crossguid.md b/docs/version-specific/supported-software/c/crossguid.md index 0fc7c7796f..a04ad98d05 100644 --- a/docs/version-specific/supported-software/c/crossguid.md +++ b/docs/version-specific/supported-software/c/crossguid.md @@ -4,7 +4,7 @@ search: --- # crossguid -CrossGuid is a minimal, cross platform, C++ GUID library. It uses the best native GUID/UUID generator on the given platform and has a generic class for parsing, stringifying, and comparing IDs. The guid generation technique is determined by your platform: +CrossGuid is a minimal, cross platform, C++ GUID library. It uses the best native GUID/UUID generator on the given platform and has a generic class for parsing, stringifying, and comparing IDs. The guid generation technique is determined by your platform: *homepage*: diff --git a/docs/version-specific/supported-software/c/cryoCARE.md b/docs/version-specific/supported-software/c/cryoCARE.md index b0b2ab010e..ea7aa6b1f6 100644 --- a/docs/version-specific/supported-software/c/cryoCARE.md +++ b/docs/version-specific/supported-software/c/cryoCARE.md @@ -4,7 +4,7 @@ search: --- # cryoCARE -This package is a memory efficient implementation of cryoCARE. This setup trains a denoising U-Net for tomographic reconstruction according to the Noise2Noise training paradigm. Therefore the user has to provide two tomograms of the same sample. The simplest way to achieve this is with direct- detector movie-frames. You can use Warp to generate two reconstructed tomograms based on the even/odd frames. Alternatively, the movie-frames can be split in two halves (e.g. with MotionCor2 -SplitSum 1 or with IMOD alignframes -debug 10000) from which two identical, up to random noise, tomograms can be reconstructed. These two (even and odd) tomograms can be used as input to this cryoCARE implementation. +This package is a memory efficient implementation of cryoCARE. This setup trains a denoising U-Net for tomographic reconstruction according to the Noise2Noise training paradigm. Therefore the user has to provide two tomograms of the same sample. The simplest way to achieve this is with direct- detector movie-frames. You can use Warp to generate two reconstructed tomograms based on the even/odd frames. Alternatively, the movie-frames can be split in two halves (e.g. with MotionCor2 -SplitSum 1 or with IMOD alignframes -debug 10000) from which two identical, up to random noise, tomograms can be reconstructed. These two (even and odd) tomograms can be used as input to this cryoCARE implementation. *homepage*: diff --git a/docs/version-specific/supported-software/c/crypt4gh.md b/docs/version-specific/supported-software/c/crypt4gh.md index 61a76c6885..7e4e73bf93 100644 --- a/docs/version-specific/supported-software/c/crypt4gh.md +++ b/docs/version-specific/supported-software/c/crypt4gh.md @@ -4,7 +4,7 @@ search: --- # crypt4gh -crypt4gh is a Python tool to encrypt, decrypt or re-encrypt files, according to the GA4GH encryption file format. +crypt4gh is a Python tool to encrypt, decrypt or re-encrypt files, according to the GA4GH encryption file format. *homepage*: diff --git a/docs/version-specific/supported-software/c/csvkit.md b/docs/version-specific/supported-software/c/csvkit.md index 2034503c79..f74f486205 100644 --- a/docs/version-specific/supported-software/c/csvkit.md +++ b/docs/version-specific/supported-software/c/csvkit.md @@ -8,11 +8,9 @@ csvkit is a suite of command-line tools for converting to and working with CSV, *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.4`` | | ``GCCcore/8.2.0`` -``1.0.5`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``1.1.0`` | | ``GCCcore/11.3.0`` +version | toolchain +--------|---------- +``1.1.0`` | ``GCCcore/11.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/ctags.md b/docs/version-specific/supported-software/c/ctags.md deleted file mode 100644 index dbb6f4b1a3..0000000000 --- a/docs/version-specific/supported-software/c/ctags.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ctags - -Ctags generates an index (or tag) file of language objects found in source files that allows these items to be quickly and easily located by a text editor or other utility. - -*homepage*: - -version | toolchain ---------|---------- -``5.8`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/ctffind.md b/docs/version-specific/supported-software/c/ctffind.md index a1f2896f5b..67d211abd6 100644 --- a/docs/version-specific/supported-software/c/ctffind.md +++ b/docs/version-specific/supported-software/c/ctffind.md @@ -10,16 +10,11 @@ Program for finding CTFs of electron micrographs. version | versionsuffix | toolchain --------|---------------|---------- -``4.1.13`` | | ``foss/2019a`` -``4.1.13`` | | ``fosscuda/2019a`` -``4.1.13`` | | ``fosscuda/2019b`` -``4.1.14`` | | ``foss/2019b`` ``4.1.14`` | ``-CUDA-11.3.1`` | ``foss/2021a`` ``4.1.14`` | | ``foss/2021b`` ``4.1.14`` | | ``foss/2022a`` ``4.1.14`` | | ``foss/2022b`` ``4.1.14`` | | ``foss/2023a`` -``4.1.14`` | | ``fosscuda/2019b`` ``4.1.14`` | | ``fosscuda/2020b`` diff --git a/docs/version-specific/supported-software/c/cuDNN.md b/docs/version-specific/supported-software/c/cuDNN.md index ad4f6461f0..7d27794704 100644 --- a/docs/version-specific/supported-software/c/cuDNN.md +++ b/docs/version-specific/supported-software/c/cuDNN.md @@ -4,34 +4,12 @@ search: --- # cuDNN -The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for deep neural networks. +The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for deep neural networks. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``4.0`` | | ``system`` -``5.0`` | ``-CUDA-7.5.18`` | ``system`` -``5.0-rc`` | | ``system`` -``5.1`` | ``-CUDA-8.0.44`` | ``system`` -``6.0`` | ``-CUDA-8.0.61`` | ``system`` -``6.0.21`` | ``-CUDA-7.5.18`` | ``system`` -``6.0.21`` | ``-CUDA-8.0.44`` | ``system`` -``7.0.2`` | ``-CUDA-9.0.176`` | ``system`` -``7.0.5`` | ``-CUDA-8.0.44`` | ``system`` -``7.0.5`` | ``-CUDA-9.0.176`` | ``system`` -``7.0.5`` | ``-CUDA-9.1.85`` | ``system`` -``7.0.5.15`` | | ``fosscuda/2017b`` -``7.0.5.15`` | | ``fosscuda/2018a`` -``7.0.5.15`` | | ``intelcuda/2017b`` -``7.1.4.18`` | | ``fosscuda/2018b`` -``7.4.2.24`` | ``-CUDA-10.0.130`` | ``system`` -``7.4.2.24`` | | ``gcccuda/2019a`` -``7.5.0.56`` | ``-CUDA-10.0.130`` | ``system`` -``7.6.2.24`` | ``-CUDA-10.1.243`` | ``system`` -``7.6.4.38`` | ``-CUDA-10.0.130`` | ``system`` -``7.6.4.38`` | | ``gcccuda/2019a`` -``7.6.4.38`` | | ``gcccuda/2019b`` ``8.0.4.30`` | ``-CUDA-11.0.2`` | ``system`` ``8.0.4.30`` | ``-CUDA-11.1.1`` | ``system`` ``8.0.5.39`` | ``-CUDA-11.1.1`` | ``system`` @@ -51,6 +29,7 @@ version | versionsuffix | toolchain ``8.9.2.26`` | ``-CUDA-12.1.1`` | ``system`` ``8.9.2.26`` | ``-CUDA-12.2.0`` | ``system`` ``8.9.7.29`` | ``-CUDA-12.3.0`` | ``system`` +``9.5.0.50`` | ``-CUDA-12.6.0`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/AGFusion.md b/docs/version-specific/supported-software/c/cuQuantum.md similarity index 78% rename from docs/version-specific/supported-software/a/AGFusion.md rename to docs/version-specific/supported-software/c/cuQuantum.md index ceac30bb2c..6aefb516df 100644 --- a/docs/version-specific/supported-software/a/AGFusion.md +++ b/docs/version-specific/supported-software/c/cuQuantum.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# AGFusion +# cuQuantum -AGFusion is a python package for annotating gene fusions from the human or mouse genomes. +NVIDIA cuQuantum is an SDK of libraries and tools for quantum computing workflows. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.2`` | ``-Python-3.7.2`` | ``foss/2019a`` +``24.08.0.5`` | ``-CUDA-12.1.1`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/cuTENSOR.md b/docs/version-specific/supported-software/c/cuTENSOR.md index 8533d7b091..22263973a5 100644 --- a/docs/version-specific/supported-software/c/cuTENSOR.md +++ b/docs/version-specific/supported-software/c/cuTENSOR.md @@ -11,13 +11,13 @@ The cuTENSOR Library is a GPU-accelerated tensor linear algebra library providin version | versionsuffix | toolchain --------|---------------|---------- ``1.2.2.5`` | ``-CUDA-11.1.1`` | ``system`` -``1.2.2.5`` | | ``gcccuda/2019b`` ``1.6.0.3`` | ``-CUDA-11.3.1`` | ``system`` ``1.6.1.5`` | ``-CUDA-11.4.1`` | ``system`` ``1.6.1.5`` | ``-CUDA-11.7.0`` | ``system`` ``1.7.0.1`` | ``-CUDA-12.0.0`` | ``system`` ``2.0.1.2`` | ``-CUDA-12.1.1`` | ``system`` ``2.0.1.2`` | ``-CUDA-12.2.2`` | ``system`` +``2.0.2.5`` | ``-CUDA-12.6.0`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/custodian.md b/docs/version-specific/supported-software/c/custodian.md deleted file mode 100644 index dfda95a5bf..0000000000 --- a/docs/version-specific/supported-software/c/custodian.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# custodian - -A simple JIT job management framework in Python. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.0`` | ``-Python-2.7.13`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/cutadapt.md b/docs/version-specific/supported-software/c/cutadapt.md index 0a55f64d7d..6adcd743a9 100644 --- a/docs/version-specific/supported-software/c/cutadapt.md +++ b/docs/version-specific/supported-software/c/cutadapt.md @@ -4,36 +4,15 @@ search: --- # cutadapt -Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads. +Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.14`` | ``-Python-2.7.13`` | ``foss/2017a`` -``1.14`` | ``-Python-2.7.13`` | ``intel/2017a`` -``1.15`` | ``-Python-3.5.2`` | ``foss/2016b`` -``1.16`` | ``-Python-2.7.14`` | ``foss/2017b`` -``1.16`` | ``-Python-3.6.3`` | ``foss/2017b`` -``1.16`` | ``-Python-3.6.4`` | ``foss/2018a`` -``1.16`` | ``-Python-2.7.14`` | ``intel/2017b`` -``1.16`` | ``-Python-3.6.3`` | ``intel/2017b`` -``1.16`` | ``-Python-2.7.14`` | ``intel/2018a`` -``1.16`` | ``-Python-3.6.4`` | ``intel/2018a`` ``1.18`` | ``-Python-2.7.18`` | ``GCC/10.2.0`` -``1.18`` | | ``GCCcore/8.2.0`` -``1.18`` | | ``GCCcore/8.3.0`` -``1.18`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.18`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.18`` | ``-Python-3.6.6`` | ``intel/2018b`` -``1.9.1`` | ``-Python-2.7.11`` | ``foss/2016a`` -``1.9.1`` | ``-Python-2.7.12`` | ``foss/2016b`` -``2.1`` | ``-Python-3.6.6`` | ``foss/2018b`` +``1.18`` | ``-Python-2.7.18`` | ``GCCcore/12.3.0`` ``2.10`` | | ``GCCcore/10.2.0`` -``2.10`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``2.10`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` -``2.7`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``2.8`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` ``3.4`` | | ``GCCcore/10.2.0`` ``3.4`` | | ``GCCcore/10.3.0`` ``3.5`` | | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/c/cysignals.md b/docs/version-specific/supported-software/c/cysignals.md index caabc1a918..ff7d278a7c 100644 --- a/docs/version-specific/supported-software/c/cysignals.md +++ b/docs/version-specific/supported-software/c/cysignals.md @@ -4,18 +4,14 @@ search: --- # cysignals -The cysignals package provides mechanisms to handle interrupts (and other signals and errors) in Cython code. +The cysignals package provides mechanisms to handle interrupts (and other signals and errors) in Cython code. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.10.2`` | ``-Python-2.7.14`` | ``foss/2017b`` -``1.10.2`` | ``-Python-3.6.3`` | ``foss/2017b`` -``1.10.2`` | ``-Python-2.7.14`` | ``intel/2017b`` -``1.10.2`` | ``-Python-3.6.3`` | ``intel/2017b`` -``1.11.2`` | | ``GCCcore/11.3.0`` -``1.11.4`` | | ``GCCcore/13.2.0`` +version | toolchain +--------|---------- +``1.11.2`` | ``GCCcore/11.3.0`` +``1.11.4`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/cython-cmake.md b/docs/version-specific/supported-software/c/cython-cmake.md new file mode 100644 index 0000000000..0b7862ef79 --- /dev/null +++ b/docs/version-specific/supported-software/c/cython-cmake.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# cython-cmake + +Custom CMake rules to generate the source code for a Python extension module using cython + +*homepage*: + +version | toolchain +--------|---------- +``0.2.0`` | ``GCCcore/13.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/c/cytoolz.md b/docs/version-specific/supported-software/c/cytoolz.md deleted file mode 100644 index fa338521a4..0000000000 --- a/docs/version-specific/supported-software/c/cytoolz.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# cytoolz - -Cython implementation of the toolz package, which provides high performance utility functions for iterables, functions, and dictionaries. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.1`` | ``-Python-3.7.2`` | ``GCCcore/8.2.0`` -``0.10.1`` | ``-Python-3.6.6`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/cytosim.md b/docs/version-specific/supported-software/c/cytosim.md deleted file mode 100644 index a70b49378e..0000000000 --- a/docs/version-specific/supported-software/c/cytosim.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# cytosim - -Cytosim is a cytoskeleton simulation engine written in C++ working on Mac OS, GNU/Linux and Windows (with Cygwin). - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20190117`` | ``-mkl`` | ``gomkl/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/cyvcf2.md b/docs/version-specific/supported-software/c/cyvcf2.md index 1657d8fd0a..060ef03a31 100644 --- a/docs/version-specific/supported-software/c/cyvcf2.md +++ b/docs/version-specific/supported-software/c/cyvcf2.md @@ -4,16 +4,13 @@ search: --- # cyvcf2 -cython + htslib == fast VCF and BCF processing +cyvcf2 is a cython wrapper around htslib built for fast parsing of Variant Call Format (VCF) files. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.10`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.11.5`` | | ``foss/2019a`` -``0.11.5`` | | ``intel/2019a`` -``0.31.1`` | | ``gfbf/2023a`` +version | toolchain +--------|---------- +``0.31.1`` | ``gfbf/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/index.md b/docs/version-specific/supported-software/c/index.md index 75be9ccdee..45c6e7d1c3 100644 --- a/docs/version-specific/supported-software/c/index.md +++ b/docs/version-specific/supported-software/c/index.md @@ -9,32 +9,20 @@ search: * [c-ares](c-ares.md) - * [C3D](C3D.md) - * [cadaver](cadaver.md) - * [CaDiCaL](CaDiCaL.md) * [CAFE5](CAFE5.md) - * [Caffe](Caffe.md) * [cairo](cairo.md) * [cairomm](cairomm.md) - * [Calcam](Calcam.md) * [CalculiX-CrunchiX](CalculiX-CrunchiX.md) - * [Calendrical](Calendrical.md) - * [Calib](Calib.md) * [CAMPARI](CAMPARI.md) * [Cantera](Cantera.md) * [canu](canu.md) - * [Canvas](Canvas.md) - * [CAP3](CAP3.md) * [CapnProto](CapnProto.md) * [captum](captum.md) - * [Cargo](Cargo.md) - * [Carma](Carma.md) * [carputils](carputils.md) * [Cartopy](Cartopy.md) * [CASA](CASA.md) * [casacore](casacore.md) * [Casanovo](Casanovo.md) - * [CaSpER](CaSpER.md) * [CASPR](CASPR.md) * [Cassiopeia](Cassiopeia.md) * [CASTEP](CASTEP.md) @@ -46,22 +34,13 @@ search: * [category_encoders](category_encoders.md) * [CatLearn](CatLearn.md) * [CatMAP](CatMAP.md) - * [causallift](causallift.md) - * [causalml](causalml.md) - * [CaVEMan](CaVEMan.md) - * [CAVIAR](CAVIAR.md) * [Cbc](Cbc.md) - * [CBLAS](CBLAS.md) * [ccache](ccache.md) * [CCCL](CCCL.md) - * [CCfits](CCfits.md) * [CCL](CCL.md) * [cclib](cclib.md) * [cctbx-base](cctbx-base.md) - * [cctools](cctools.md) * [CD-HIT](CD-HIT.md) - * [CDAT](CDAT.md) - * [cdbfasta](cdbfasta.md) * [CDBtools](CDBtools.md) * [cddlib](cddlib.md) * [CDFlib](CDFlib.md) @@ -72,9 +51,10 @@ search: * [cell2location](cell2location.md) * [CellBender](CellBender.md) * [CellChat](CellChat.md) - * [CellMix](CellMix.md) + * [Cellformer](Cellformer.md) * [CellOracle](CellOracle.md) * [Cellpose](Cellpose.md) + * [CellProfiler](CellProfiler.md) * [CellRanger](CellRanger.md) * [CellRanger-ARC](CellRanger-ARC.md) * [CellRanger-ATAC](CellRanger-ATAC.md) @@ -84,129 +64,110 @@ search: * [centerline](centerline.md) * [Centrifuge](Centrifuge.md) * [Cereal](Cereal.md) + * [Ceres-Solver](Ceres-Solver.md) * [CESM-deps](CESM-deps.md) - * [CFDEMcoupling](CFDEMcoupling.md) * [cffi](cffi.md) * [cfgrib](cfgrib.md) * [CFITSIO](CFITSIO.md) - * [cftime](cftime.md) * [CGAL](CGAL.md) - * [cget](cget.md) * [Cgl](Cgl.md) - * [CGmapTools](CGmapTools.md) - * [CGNS](CGNS.md) * [CharLS](CharLS.md) * [charm-gems](charm-gems.md) - * [CHASE](CHASE.md) * [Check](Check.md) * [CheckM](CheckM.md) * [CheckM-Database](CheckM-Database.md) * [CheckM2](CheckM2.md) - * [Cheetah](Cheetah.md) * [Chemaxon-Marvin](Chemaxon-Marvin.md) * [chemprop](chemprop.md) * [CheMPS2](CheMPS2.md) * [CHERAB](CHERAB.md) * [chewBBACA](chewBBACA.md) - * [chi2comb](chi2comb.md) * [Chimera](Chimera.md) - * [ChimPipe](ChimPipe.md) * [ChIPseeker](ChIPseeker.md) * [chopper](chopper.md) - * [Chromaprint](Chromaprint.md) * [chromVARmotifs](chromVARmotifs.md) * [cicero](cicero.md) - * [CIF2Cell](CIF2Cell.md) * [cimfomfa](cimfomfa.md) - * [CIRCexplorer](CIRCexplorer.md) + * [CIRCE](CIRCE.md) * [CIRCexplorer2](CIRCexplorer2.md) * [Circlator](Circlator.md) * [Circos](Circos.md) * [Circuitscape](Circuitscape.md) - * [CIRI](CIRI.md) * [CIRI-long](CIRI-long.md) * [CIRIquant](CIRIquant.md) - * [cisTEM](cisTEM.md) - * [CITE-seq-Count](CITE-seq-Count.md) + * [cisDIVERSITY](cisDIVERSITY.md) * [Clair3](Clair3.md) * [Clang](Clang.md) * [Clang-AOMP](Clang-AOMP.md) * [Clang-Python-bindings](Clang-Python-bindings.md) * [CLANS](CLANS.md) - * [CLAPACK](CLAPACK.md) * [Clarabel.rs](Clarabel.rs.md) * [CLEAR](CLEAR.md) + * [clearml](clearml.md) * [CLEASE](CLEASE.md) * [CLHEP](CLHEP.md) * [CliMetLab](CliMetLab.md) * [CLIP](CLIP.md) * [cliquer](cliquer.md) - * [CLISP](CLISP.md) - * [ClonalFrameML](ClonalFrameML.md) - * [CLooG](CLooG.md) * [CloudCompare](CloudCompare.md) * [Clp](Clp.md) * [CLUMPP](CLUMPP.md) * [Clustal-Omega](Clustal-Omega.md) * [ClustalW2](ClustalW2.md) * [Cluster-Buster](Cluster-Buster.md) - * [ClusterShell](ClusterShell.md) * [CMake](CMake.md) * [CMAverse](CMAverse.md) + * [cmcrameri](cmcrameri.md) * [CmdStanR](CmdStanR.md) * [cmocean](cmocean.md) * [cmph](cmph.md) * [CMSeq](CMSeq.md) - * [CNT-ILP](CNT-ILP.md) * [CNVkit](CNVkit.md) - * [CNVnator](CNVnator.md) - * [Co-phylog](Co-phylog.md) + * [cnvpytor](cnvpytor.md) + * [COAWST-deps](COAWST-deps.md) * [COBRApy](COBRApy.md) * [CoCoALib](CoCoALib.md) * [CodAn](CodAn.md) * [code-cli](code-cli.md) * [code-server](code-server.md) - * [CODEX2](CODEX2.md) * [CodingQuarry](CodingQuarry.md) * [Cogent](Cogent.md) * [Coin](Coin.md) * [CoinUtils](CoinUtils.md) * [ColabFold](ColabFold.md) + * [COLMAP](COLMAP.md) * [colorize](colorize.md) * [colossalai](colossalai.md) + * [columba](columba.md) * [COMEBin](COMEBin.md) - * [Commet](Commet.md) * [CompareM](CompareM.md) * [Compass](Compass.md) * [Compress-Raw-Zlib](Compress-Raw-Zlib.md) * [COMSOL](COMSOL.md) - * [Con3F](Con3F.md) * [conan](conan.md) * [CONCOCT](CONCOCT.md) * [Concorde](Concorde.md) * [ConcurrentVersionsSystem](ConcurrentVersionsSystem.md) - * [configparser](configparser.md) * [configurable-http-proxy](configurable-http-proxy.md) * [CONN](CONN.md) * [connected-components-3d](connected-components-3d.md) * [ConnectomeWorkbench](ConnectomeWorkbench.md) * [contextily](contextily.md) * [Control-FREEC](Control-FREEC.md) + * [cookiecutter](cookiecutter.md) * [cooler](cooler.md) * [CoordgenLibs](CoordgenLibs.md) * [Coot](Coot.md) * [CopyKAT](CopyKAT.md) - * [core-counter](core-counter.md) * [Coreutils](Coreutils.md) * [corner](corner.md) * [CORSIKA](CORSIKA.md) * [COSTA](COSTA.md) * [CoSymLib](CoSymLib.md) * [coverage](coverage.md) - * [cowsay](cowsay.md) * [coxeter](coxeter.md) * [CP2K](CP2K.md) - * [CPB](CPB.md) + * [cp2k-input-tools](cp2k-input-tools.md) * [CPC2](CPC2.md) * [cpio](cpio.md) * [CPLEX](CPLEX.md) @@ -218,46 +179,32 @@ search: * [cppyy](cppyy.md) * [cppzmq](cppzmq.md) * [cpu_features](cpu_features.md) - * [cram](cram.md) * [cramino](cramino.md) - * [cramtools](cramtools.md) - * [CrayCCE](CrayCCE.md) - * [CrayGNU](CrayGNU.md) - * [CrayIntel](CrayIntel.md) - * [CrayPGI](CrayPGI.md) * [crb-blast](crb-blast.md) * [CREST](CREST.md) - * [CRF++](CRF++.md) * [CRISPR-DAV](CRISPR-DAV.md) * [CRISPResso2](CRISPResso2.md) * [Critic2](Critic2.md) * [cromwell](cromwell.md) * [crossguid](crossguid.md) - * [CrossMap](CrossMap.md) - * [CrossTalkZ](CrossTalkZ.md) - * [CRPropa](CRPropa.md) * [Crumble](Crumble.md) * [cryoCARE](cryoCARE.md) * [cryoDRGN](cryoDRGN.md) * [crypt4gh](crypt4gh.md) * [cryptography](cryptography.md) - * [CryptoMiniSat](CryptoMiniSat.md) - * [CrystFEL](CrystFEL.md) * [CSB](CSB.md) * [CSBDeep](CSBDeep.md) * [CSBLAST](CSBLAST.md) - * [cscope](cscope.md) * [csvkit](csvkit.md) - * [ctags](ctags.md) * [ctffind](ctffind.md) * [ctffind5](ctffind5.md) * [CTPL](CTPL.md) - * [Cube](Cube.md) + * [CTranslate2](CTranslate2.md) * [CubeGUI](CubeGUI.md) * [CubeLib](CubeLib.md) * [CubeWriter](CubeWriter.md) - * [CuCLARK](CuCLARK.md) * [CUDA](CUDA.md) + * [CUDA-Python](CUDA-Python.md) * [CUDA-Samples](CUDA-Samples.md) * [CUDAcompat](CUDAcompat.md) * [CUDAcore](CUDAcore.md) @@ -266,10 +213,10 @@ search: * [Cufflinks](Cufflinks.md) * [CUnit](CUnit.md) * [CuPy](CuPy.md) + * [cuQuantum](cuQuantum.md) * [cURL](cURL.md) * [currentNe](currentNe.md) * [cuSPARSELt](cuSPARSELt.md) - * [custodian](custodian.md) * [cutadapt](cutadapt.md) * [cuTENSOR](cuTENSOR.md) * [cuteSV](cuteSV.md) @@ -284,9 +231,8 @@ search: * [cysignals](cysignals.md) * [Cython](Cython.md) * [cython-blis](cython-blis.md) - * [cytoolz](cytoolz.md) + * [cython-cmake](cython-cmake.md) * [Cytoscape](Cytoscape.md) - * [cytosim](cytosim.md) * [cyvcf2](cyvcf2.md) diff --git a/docs/version-specific/supported-software/d/DANPOS2.md b/docs/version-specific/supported-software/d/DANPOS2.md deleted file mode 100644 index 71e5ed0de3..0000000000 --- a/docs/version-specific/supported-software/d/DANPOS2.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# DANPOS2 - -A toolkit for Dynamic Analysis of Nucleosome and Protein Occupancy by Sequencing, version 2 - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.2.2`` | ``-Python-2.7.12`` | ``foss/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/DAS_Tool.md b/docs/version-specific/supported-software/d/DAS_Tool.md index c343a9d7dc..ab62bc1c33 100644 --- a/docs/version-specific/supported-software/d/DAS_Tool.md +++ b/docs/version-specific/supported-software/d/DAS_Tool.md @@ -10,7 +10,6 @@ DAS Tool is an automated method that integrates the results of a flexible number version | versionsuffix | toolchain --------|---------------|---------- -``1.1.1`` | ``-R-3.5.1-Python-2.7.15`` | ``foss/2018b`` ``1.1.1`` | ``-R-4.1.2`` | ``foss/2021b`` ``1.1.3`` | ``-R-4.1.0`` | ``foss/2021a`` diff --git a/docs/version-specific/supported-software/d/DB.md b/docs/version-specific/supported-software/d/DB.md index ba5196a5d5..6937500dda 100644 --- a/docs/version-specific/supported-software/d/DB.md +++ b/docs/version-specific/supported-software/d/DB.md @@ -4,16 +4,12 @@ search: --- # DB -Berkeley DB enables the development of custom data management solutions, without the overhead traditionally associated with such custom projects. +Berkeley DB enables the development of custom data management solutions, without the overhead traditionally associated with such custom projects. *homepage*: version | toolchain --------|---------- -``18.1.25`` | ``GCCcore/7.3.0`` -``18.1.32`` | ``GCCcore/8.2.0`` -``18.1.32`` | ``GCCcore/8.3.0`` -``18.1.32`` | ``GCCcore/9.3.0`` ``18.1.40`` | ``GCCcore/10.2.0`` ``18.1.40`` | ``GCCcore/10.3.0`` ``18.1.40`` | ``GCCcore/11.2.0`` @@ -21,13 +17,8 @@ version | toolchain ``18.1.40`` | ``GCCcore/12.1.0`` ``18.1.40`` | ``GCCcore/12.2.0`` ``18.1.40`` | ``GCCcore/12.3.0`` +``18.1.40`` | ``GCCcore/13.2.0`` ``18.1.40`` | ``GCCcore/13.3.0`` -``18.1.40`` | ``GCCcore/8.2.0`` -``18.1.40`` | ``GCCcore/8.3.0`` -``4.8.30`` | ``intel/2016a`` -``6.2.23`` | ``foss/2016a`` -``6.2.32`` | ``GCCcore/6.4.0`` -``6.2.32`` | ``intel/2017a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/DBD-mysql.md b/docs/version-specific/supported-software/d/DBD-mysql.md index 2ed0131485..fc090c55fe 100644 --- a/docs/version-specific/supported-software/d/DBD-mysql.md +++ b/docs/version-specific/supported-software/d/DBD-mysql.md @@ -6,22 +6,16 @@ search: Perl binding for MySQL -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.032`` | ``-Perl-5.22.2`` | ``intel/2016a`` -``4.033`` | ``-Perl-5.24.0`` | ``intel/2016b`` -``4.042`` | ``-Perl-5.24.1`` | ``intel/2017a`` -``4.046`` | ``-Perl-5.26.0`` | ``foss/2017b`` -``4.046`` | ``-Perl-5.26.0`` | ``intel/2017b`` -``4.046`` | ``-Perl-5.26.1`` | ``intel/2018a`` -``4.048`` | ``-Perl-5.28.0`` | ``foss/2018b`` -``4.050`` | | ``GCC/10.2.0`` -``4.050`` | | ``GCC/11.2.0`` -``4.050`` | | ``GCC/11.3.0`` -``4.050`` | | ``GCC/12.2.0`` -``4.050`` | ``-Perl-5.28.1`` | ``foss/2019a`` +version | toolchain +--------|---------- +``4.050`` | ``GCC/10.2.0`` +``4.050`` | ``GCC/11.2.0`` +``4.050`` | ``GCC/11.3.0`` +``4.050`` | ``GCC/12.2.0`` +``4.050`` | ``GCC/12.3.0`` +``4.051`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/DBG2OLC.md b/docs/version-specific/supported-software/d/DBG2OLC.md index 52d32e6541..a114a57dd2 100644 --- a/docs/version-specific/supported-software/d/DBG2OLC.md +++ b/docs/version-specific/supported-software/d/DBG2OLC.md @@ -4,16 +4,12 @@ search: --- # DBG2OLC -DBG2OLC:Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies +DBG2OLC:Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies *homepage*: version | toolchain --------|---------- -``20170208`` | ``intel/2016b`` -``20170208`` | ``intel/2017a`` -``20180221`` | ``GCC/6.4.0-2.28`` -``20180221`` | ``iccifort/2017.4.196-GCC-6.4.0-2.28`` ``20200724`` | ``GCC/11.3.0`` diff --git a/docs/version-specific/supported-software/d/DB_File.md b/docs/version-specific/supported-software/d/DB_File.md index 832e1d819f..3169dc0e38 100644 --- a/docs/version-specific/supported-software/d/DB_File.md +++ b/docs/version-specific/supported-software/d/DB_File.md @@ -8,17 +8,15 @@ Perl5 access to Berkeley DB version 1.x. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.835`` | | ``GCCcore/9.3.0`` -``1.835`` | ``-Perl-5.22.1`` | ``foss/2016a`` -``1.835`` | ``-Perl-5.20.3`` | ``intel/2016a`` -``1.855`` | | ``GCCcore/10.2.0`` -``1.856`` | | ``GCCcore/10.3.0`` -``1.857`` | | ``GCCcore/11.2.0`` -``1.858`` | | ``GCCcore/11.3.0`` -``1.859`` | | ``GCCcore/12.3.0`` -``1.859`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``1.855`` | ``GCCcore/10.2.0`` +``1.856`` | ``GCCcore/10.3.0`` +``1.857`` | ``GCCcore/11.2.0`` +``1.858`` | ``GCCcore/11.3.0`` +``1.859`` | ``GCCcore/12.3.0`` +``1.859`` | ``GCCcore/13.2.0`` +``1.859`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/DBus.md b/docs/version-specific/supported-software/d/DBus.md index 69c1c656d8..1370899805 100644 --- a/docs/version-specific/supported-software/d/DBus.md +++ b/docs/version-specific/supported-software/d/DBus.md @@ -6,24 +6,13 @@ search: D-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a "single instance" application or daemon, and to launch applications and daemons on demand when their services are needed. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.10.12`` | ``intel/2016b`` -``1.10.20`` | ``GCCcore/6.4.0`` -``1.10.8`` | ``foss/2016a`` -``1.10.8`` | ``intel/2016a`` -``1.11.20`` | ``intel/2017a`` -``1.13.0`` | ``intel/2017b`` -``1.13.12`` | ``GCCcore/8.3.0`` -``1.13.12`` | ``GCCcore/9.3.0`` ``1.13.18`` | ``GCCcore/10.2.0`` ``1.13.18`` | ``GCCcore/10.3.0`` ``1.13.18`` | ``GCCcore/11.2.0`` -``1.13.6`` | ``GCCcore/6.4.0`` -``1.13.6`` | ``GCCcore/7.3.0`` -``1.13.8`` | ``GCCcore/8.2.0`` ``1.14.0`` | ``GCCcore/11.3.0`` ``1.15.2`` | ``GCCcore/12.2.0`` ``1.15.4`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/d/DCMTK.md b/docs/version-specific/supported-software/d/DCMTK.md index 199d17e849..23d4cc4c42 100644 --- a/docs/version-specific/supported-software/d/DCMTK.md +++ b/docs/version-specific/supported-software/d/DCMTK.md @@ -10,9 +10,6 @@ DCMTK is a collection of libraries and applications implementing large parts the version | toolchain --------|---------- -``3.6.3`` | ``GCCcore/7.3.0`` -``3.6.5`` | ``GCCcore/8.2.0`` -``3.6.5`` | ``GCCcore/8.3.0`` ``3.6.6`` | ``GCCcore/10.3.0`` ``3.6.6`` | ``GCCcore/11.2.0`` ``3.6.7`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/d/DECAF-synthetic-data.md b/docs/version-specific/supported-software/d/DECAF-synthetic-data.md new file mode 100644 index 0000000000..82dbb97df9 --- /dev/null +++ b/docs/version-specific/supported-software/d/DECAF-synthetic-data.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# DECAF-synthetic-data + +DEbiasing CAusal Fairness - Generating Fair Synthetic Data Using Causally-Aware Generative Networks + +*homepage*: + +version | toolchain +--------|---------- +``0.1.6`` | ``foss/2022b`` +``0.1.6`` | ``foss/2023b`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/d/DETONATE.md b/docs/version-specific/supported-software/d/DETONATE.md index 88217b6a8d..4406a1ee60 100644 --- a/docs/version-specific/supported-software/d/DETONATE.md +++ b/docs/version-specific/supported-software/d/DETONATE.md @@ -11,7 +11,6 @@ DETONATE (DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evalu version | toolchain --------|---------- ``1.11`` | ``GCC/12.3.0`` -``1.11`` | ``intel/2017b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/DFA.md b/docs/version-specific/supported-software/d/DFA.md index 46743836af..403ae6653a 100644 --- a/docs/version-specific/supported-software/d/DFA.md +++ b/docs/version-specific/supported-software/d/DFA.md @@ -8,10 +8,9 @@ Python library for modeling DFAs, Moore Machines, and Transition Systems. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.3.4`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` -``2.1.2`` | | ``GCCcore/10.2.0`` +version | toolchain +--------|---------- +``2.1.2`` | ``GCCcore/10.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/DFT-D3.md b/docs/version-specific/supported-software/d/DFT-D3.md index 2d99c76945..367283f283 100644 --- a/docs/version-specific/supported-software/d/DFT-D3.md +++ b/docs/version-specific/supported-software/d/DFT-D3.md @@ -4,15 +4,14 @@ search: --- # DFT-D3 -DFT-D3 implements a dispersion correction for density functionals, Hartree-Fock and semi-empirical quantum chemical methods. +DFT-D3 implements a dispersion correction for density functionals, Hartree-Fock and semi-empirical quantum chemical methods. *homepage*: version | toolchain --------|---------- -``3.2.0`` | ``GCC/8.3.0`` ``3.2.0`` | ``iccifort/2020.4.304`` -``3.2.0`` | ``intel/2019a`` +``3.2.0`` | ``intel/2023a`` ``3.2.0`` | ``intel-compilers/2021.2.0`` ``3.2.0`` | ``intel-compilers/2021.4.0`` ``3.2.0`` | ``intel-compilers/2022.2.1`` diff --git a/docs/version-specific/supported-software/d/DFT-D4.md b/docs/version-specific/supported-software/d/DFT-D4.md index ba7fda2361..70055ca377 100644 --- a/docs/version-specific/supported-software/d/DFT-D4.md +++ b/docs/version-specific/supported-software/d/DFT-D4.md @@ -8,10 +8,10 @@ Generally Applicable Atomic-Charge Dependent London Dispersion Correction. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.2.0`` | ``-Python-3.7.4`` | ``intel/2019b`` -``3.6.0`` | | ``intel/2022a`` +version | toolchain +--------|---------- +``3.6.0`` | ``intel/2022a`` +``3.7.0`` | ``gomkl/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/DFTB+.md b/docs/version-specific/supported-software/d/DFTB+.md index 7df03d620e..a13a74e054 100644 --- a/docs/version-specific/supported-software/d/DFTB+.md +++ b/docs/version-specific/supported-software/d/DFTB+.md @@ -4,18 +4,14 @@ search: --- # DFTB+ -DFTB+ is a fast and efficient versatile quantum mechanical simulation package. It is based on the Density Functional Tight Binding (DFTB) method, containing almost all of the useful extensions which have been developed for the DFTB framework so far. Using DFTB+ you can carry out quantum mechanical simulations like with ab-initio density functional theory based packages, but in an approximate way gaining typically around two order of magnitude in speed. +DFTB+ is a fast and efficient versatile quantum mechanical simulation package. It is based on the Density Functional Tight Binding (DFTB) method, containing almost all of the useful extensions which have been developed for the DFTB framework so far. Using DFTB+ you can carry out quantum mechanical simulations like with ab-initio density functional theory based packages, but in an approximate way gaining typically around two order of magnitude in speed. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.3.1`` | | ``intel/2017a`` -``17.1`` | ``-Python-2.7.14`` | ``intel/2017b`` -``19.1`` | ``-Python-2.7.16-mpi`` | ``foss/2019b`` -``19.1`` | ``-Python-2.7.16`` | ``foss/2019b`` -``21.1`` | | ``intel/2021a`` -``24.1`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``21.1`` | ``intel/2021a`` +``24.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/DGL.md b/docs/version-specific/supported-software/d/DGL.md index 38b8109c7b..df96000866 100644 --- a/docs/version-specific/supported-software/d/DGL.md +++ b/docs/version-specific/supported-software/d/DGL.md @@ -10,7 +10,6 @@ DGL is an easy-to-use, high performance and scalable Python package for deep lea version | versionsuffix | toolchain --------|---------------|---------- -``0.6.1`` | ``-Python-3.7.4-PyTorch-1.8.1`` | ``fosscuda/2019b`` ``0.9.1`` | ``-CUDA-11.3.1`` | ``foss/2021a`` diff --git a/docs/version-specific/supported-software/d/DIAL.md b/docs/version-specific/supported-software/d/DIAL.md deleted file mode 100644 index 6abe811718..0000000000 --- a/docs/version-specific/supported-software/d/DIAL.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# DIAL - -DIAL (De novo Identification of Alleles) is a collection of programs to automate the discovery of alleles for a species where we lack a reference sequence. The SNPs/alleles are specifically selected for a low error rate in genotyping assays. - -*homepage*: - -version | toolchain ---------|---------- -``2011.06.06`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/DIAMOND.md b/docs/version-specific/supported-software/d/DIAMOND.md index 1174a1ca03..b9f5079b05 100644 --- a/docs/version-specific/supported-software/d/DIAMOND.md +++ b/docs/version-specific/supported-software/d/DIAMOND.md @@ -10,19 +10,9 @@ Accelerated BLAST compatible local sequence aligner version | toolchain --------|---------- -``0.9.22`` | ``foss/2018a`` -``0.9.22`` | ``foss/2018b`` -``0.9.22`` | ``intel/2018a`` -``0.9.22`` | ``intel/2018b`` -``0.9.24`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``0.9.30`` | ``GCC/8.3.0`` -``0.9.30`` | ``iccifort/2019.5.281`` -``0.9.36`` | ``GCC/9.3.0`` ``2.0.11`` | ``GCC/10.3.0`` ``2.0.13`` | ``GCC/10.3.0`` ``2.0.13`` | ``GCC/11.2.0`` -``2.0.4`` | ``GCC/9.3.0`` -``2.0.6`` | ``GCC/7.3.0-2.30`` ``2.0.7`` | ``GCC/10.2.0`` ``2.1.0`` | ``GCC/11.3.0`` ``2.1.8`` | ``GCC/10.3.0`` diff --git a/docs/version-specific/supported-software/d/DIRAC.md b/docs/version-specific/supported-software/d/DIRAC.md index c02528d831..ea1c03dc6d 100644 --- a/docs/version-specific/supported-software/d/DIRAC.md +++ b/docs/version-specific/supported-software/d/DIRAC.md @@ -10,8 +10,6 @@ DIRAC: Program for Atomic and Molecular Direct Iterative Relativistic All-electr version | versionsuffix | toolchain --------|---------------|---------- -``19.0`` | ``-Python-2.7.18-int64`` | ``intel/2020a`` -``19.0`` | ``-Python-2.7.18-mpi-int64`` | ``intel/2020a`` ``22.0`` | | ``foss/2021a`` ``22.0`` | ``-int64`` | ``intel/2021a`` ``22.0`` | | ``intel/2021a`` diff --git a/docs/version-specific/supported-software/d/DL_POLY_Classic.md b/docs/version-specific/supported-software/d/DL_POLY_Classic.md deleted file mode 100644 index 90d817ee53..0000000000 --- a/docs/version-specific/supported-software/d/DL_POLY_Classic.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# DL_POLY_Classic - -DL_POLY Classic is a general purpose (parallel and serial) molecular dynamics simulation package. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.10`` | | ``foss/2019b`` -``1.10`` | | ``intel/2019b`` -``1.9`` | ``-PLUMED-2.2.3`` | ``intel/2016b`` -``1.9`` | | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/DMCfun.md b/docs/version-specific/supported-software/d/DMCfun.md deleted file mode 100644 index 996c5797ea..0000000000 --- a/docs/version-specific/supported-software/d/DMCfun.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# DMCfun - -Diffusion Model of Conflict (DMC) in Reaction Time Tasks - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.3.0`` | ``-R-3.6.2`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/DMTCP.md b/docs/version-specific/supported-software/d/DMTCP.md index 952af2a7c5..cc671efbb0 100644 --- a/docs/version-specific/supported-software/d/DMTCP.md +++ b/docs/version-specific/supported-software/d/DMTCP.md @@ -4,20 +4,12 @@ search: --- # DMTCP -DMTCP (Distributed MultiThreaded Checkpointing) transparently checkpoints a single-host or distributed computation in user-space -- with no modifications to user code or to the O/S. +DMTCP is a tool to transparently checkpoint the state of multiple simultaneous applications, including multi-threaded and distributed applications. It operates directly on the user binary executable, without any Linux kernel modules or other kernel modifications. *homepage*: version | toolchain --------|---------- -``2.4.5`` | ``system`` -``2.5.0`` | ``foss/2016a`` -``2.5.1`` | ``system`` -``2.5.2`` | ``GCCcore/8.3.0`` -``2.5.2`` | ``foss/2016b`` -``2.5.2`` | ``foss/2018b`` -``2.6.0`` | ``GCCcore/8.2.0`` -``2.6.0`` | ``GCCcore/9.3.0`` ``3.0.0`` | ``GCCcore/11.3.0`` ``3.0.0`` | ``GCCcore/12.2.0`` ``3.0.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/d/DOLFIN.md b/docs/version-specific/supported-software/d/DOLFIN.md deleted file mode 100644 index 038b422c50..0000000000 --- a/docs/version-specific/supported-software/d/DOLFIN.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# DOLFIN - -DOLFIN is the C++/Python interface of FEniCS, providing a consistent PSE (Problem Solving Environment) for ordinary and partial differential equations. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2018.1.0.post1`` | ``-Python-3.6.4`` | ``foss/2018a`` -``2019.1.0.post0`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/DP3.md b/docs/version-specific/supported-software/d/DP3.md index d7610ddd72..53f7f76d4b 100644 --- a/docs/version-specific/supported-software/d/DP3.md +++ b/docs/version-specific/supported-software/d/DP3.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``6.0`` | ``foss/2022a`` ``6.0`` | ``foss/2023b`` +``6.2`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/DSA.md b/docs/version-specific/supported-software/d/DSA.md deleted file mode 100644 index be77ca2507..0000000000 --- a/docs/version-specific/supported-software/d/DSA.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# DSA - -Digital Sorting Algorithm - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0`` | ``-R-3.5.1`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/DSRC.md b/docs/version-specific/supported-software/d/DSRC.md deleted file mode 100644 index 55b8dcf2b7..0000000000 --- a/docs/version-specific/supported-software/d/DSRC.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# DSRC - -DNA Sequence Reads Compression is an application designed for compression of data files containing reads from DNA sequencing in FASTQ format. The amount of such files can be huge, e.g., a few (or tens) of gigabytes, so a need for a robust data compression tool is clear. Usually universal compression programs like gzip or bzip2 are used for this purpose, but it is obvious that a specialized tool can work better. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0rc`` | ``-linux-64-bit`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/Dalton.md b/docs/version-specific/supported-software/d/Dalton.md index a15f9e98c1..a24976c1cf 100644 --- a/docs/version-specific/supported-software/d/Dalton.md +++ b/docs/version-specific/supported-software/d/Dalton.md @@ -8,11 +8,10 @@ The Dalton code is a powerful tool for a wide range of molecular properties at *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2016`` | ``-i8`` | ``intel/2017b`` -``2020.0`` | | ``foss/2021a`` -``2020.1`` | | ``foss/2022b`` +version | toolchain +--------|---------- +``2020.0`` | ``foss/2021a`` +``2020.1`` | ``foss/2022b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/Dask-ML.md b/docs/version-specific/supported-software/d/Dask-ML.md new file mode 100644 index 0000000000..af7eda790d --- /dev/null +++ b/docs/version-specific/supported-software/d/Dask-ML.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# Dask-ML + +Dask-ML provides scalable machine learning in Python using Dask alongside popular machine learning libraries like Scikit-Learn, XGBoost, and others. + +*homepage*: + +version | toolchain +--------|---------- +``2022.5.27`` | ``foss/2022a`` +``2024.4.4`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/d/DeMixT.md b/docs/version-specific/supported-software/d/DeMixT.md deleted file mode 100644 index 8b3c8cc090..0000000000 --- a/docs/version-specific/supported-software/d/DeMixT.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# DeMixT - -Cell type-specific deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platforms. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.2.1`` | ``-R-3.5.1`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/DeconICA.md b/docs/version-specific/supported-software/d/DeconICA.md deleted file mode 100644 index e8f0b87057..0000000000 --- a/docs/version-specific/supported-software/d/DeconICA.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# DeconICA - -Deconvolution of transcriptome through Immune Component Analysis (DeconICA) is an R package for identifying immune-related signals in transcriptome through deconvolution or unsupervised source separation methods. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1.0`` | ``-R-3.5.1`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/DeepDRR.md b/docs/version-specific/supported-software/d/DeepDRR.md new file mode 100644 index 0000000000..eaf43138d4 --- /dev/null +++ b/docs/version-specific/supported-software/d/DeepDRR.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# DeepDRR + +DeepDRR provides state-of-the-art tools to generate realistic radiographs and fluoroscopy from 3D CTs on a training set scale. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``1.1.3`` | ``-CUDA-11.7.0`` | ``foss/2022a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/d/DeepLoc.md b/docs/version-specific/supported-software/d/DeepLoc.md index d9aa4dbbd2..a4cb93ca5a 100644 --- a/docs/version-specific/supported-software/d/DeepLoc.md +++ b/docs/version-specific/supported-software/d/DeepLoc.md @@ -8,9 +8,11 @@ DeepLoc 2.0 predicts the subcellular localization(s) of eukaryotic proteins *homepage*: -version | toolchain ---------|---------- -``2.0`` | ``foss/2022b`` +version | versionsuffix | toolchain +--------|---------------|---------- +``2.0`` | | ``foss/2022b`` +``2.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``2.0`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/DeepSurv.md b/docs/version-specific/supported-software/d/DeepSurv.md deleted file mode 100644 index 5095bfd1d7..0000000000 --- a/docs/version-specific/supported-software/d/DeepSurv.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# DeepSurv - -DeepSurv is a deep learning approach to survival analysis. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0.0-20180922`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/Delly.md b/docs/version-specific/supported-software/d/Delly.md index 97a69d8cab..540c732aba 100644 --- a/docs/version-specific/supported-software/d/Delly.md +++ b/docs/version-specific/supported-software/d/Delly.md @@ -4,16 +4,15 @@ search: --- # Delly -Delly is an integrated structural variant (SV) prediction method that can discover, genotype and visualize deletions, tandem duplications, inversions and translocations at single-nucleotide resolution in short-read massively parallel sequencing data. +Delly is an integrated structural variant (SV) prediction method that can discover, genotype and visualize deletions, tandem duplications, inversions and translocations at single-nucleotide resolution in short-read massively parallel sequencing data. It uses paired-ends, split-reads and read-depth to sensitively and accurately delineate genomic rearrangements throughout the genome. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.7.8`` | ``-linux_x86_64`` | ``system`` -``0.8.7`` | | ``gompi/2020b`` -``1.1.5`` | | ``GCC/11.3.0`` -``1.1.6`` | | ``GCC/12.2.0`` +version | toolchain +--------|---------- +``0.8.7`` | ``gompi/2020b`` +``1.1.5`` | ``GCC/11.3.0`` +``1.1.6`` | ``GCC/12.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/DendroPy.md b/docs/version-specific/supported-software/d/DendroPy.md index 2ff8797cf5..b7dd784904 100644 --- a/docs/version-specific/supported-software/d/DendroPy.md +++ b/docs/version-specific/supported-software/d/DendroPy.md @@ -10,17 +10,13 @@ A Python library for phylogenetics and phylogenetic computing: reading, writing, version | versionsuffix | toolchain --------|---------------|---------- -``4.4.0`` | | ``GCCcore/8.2.0`` -``4.4.0`` | | ``GCCcore/8.3.0`` -``4.4.0`` | | ``GCCcore/9.3.0`` -``4.4.0`` | ``-Python-2.7.15`` | ``intel/2018b`` -``4.4.0`` | | ``intel/2019a`` ``4.5.2`` | ``-Python-2.7.18`` | ``GCCcore/10.2.0`` ``4.5.2`` | | ``GCCcore/10.2.0`` ``4.5.2`` | | ``GCCcore/10.3.0`` ``4.5.2`` | | ``GCCcore/11.2.0`` ``4.5.2`` | | ``GCCcore/11.3.0`` ``4.5.2`` | | ``GCCcore/12.2.0`` +``4.5.2`` | ``-Python-2.7.18`` | ``GCCcore/12.3.0`` ``4.6.1`` | | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/d/Deprecated.md b/docs/version-specific/supported-software/d/Deprecated.md index 19f8ca27eb..4a3f05b0f6 100644 --- a/docs/version-specific/supported-software/d/Deprecated.md +++ b/docs/version-specific/supported-software/d/Deprecated.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``1.2.13`` | ``foss/2021a`` ``1.2.13`` | ``foss/2022a`` +``1.2.14`` | ``GCCcore/13.2.0`` ``1.2.14`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/d/Devito.md b/docs/version-specific/supported-software/d/Devito.md deleted file mode 100644 index dd35b0d661..0000000000 --- a/docs/version-specific/supported-software/d/Devito.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Devito - -Devito is a domain-specific Language (DSL) and code generation framework for performing optimised Finite Difference (FD) computation from high-level symbolic problem definitions. Devito performs automated code generation and Just-In-time (JIT) compilation based on symbolic equations defined in SymPy to create and execute highly optimised Finite Difference stencil kernels on multiple computer platforms. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``4.6.1`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/Dice.md b/docs/version-specific/supported-software/d/Dice.md index 2b1b586f52..3a856d3e46 100644 --- a/docs/version-specific/supported-software/d/Dice.md +++ b/docs/version-specific/supported-software/d/Dice.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``20221025`` | ``foss/2022a`` ``20240101`` | ``foss/2022b`` +``20240702`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/DicomBrowser.md b/docs/version-specific/supported-software/d/DicomBrowser.md deleted file mode 100644 index 490b4a3be9..0000000000 --- a/docs/version-specific/supported-software/d/DicomBrowser.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# DicomBrowser - -DicomBrowser is an application for inspecting and modifying DICOM metadata in many files at once. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.7.0b5`` | ``-Java-1.7.0_80`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/Diffutils.md b/docs/version-specific/supported-software/d/Diffutils.md deleted file mode 100644 index 5f6fc2059a..0000000000 --- a/docs/version-specific/supported-software/d/Diffutils.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Diffutils - -Diffutils: GNU diff utilities - find the differences between files - -*homepage*: - -version | toolchain ---------|---------- -``3.3`` | ``GCC/4.8.2`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/Doris.md b/docs/version-specific/supported-software/d/Doris.md deleted file mode 100644 index e7218359cc..0000000000 --- a/docs/version-specific/supported-software/d/Doris.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Doris - -Delft object-oriented radar interferometric software - -*homepage*: - -version | toolchain ---------|---------- -``4.02`` | ``intel/2017a`` -``4.04beta4`` | ``foss/2018a`` -``4.04beta4`` | ``intel/2017a`` -``4.06beta2`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/DoubletFinder.md b/docs/version-specific/supported-software/d/DoubletFinder.md index 2c66a40c15..4095290022 100644 --- a/docs/version-specific/supported-software/d/DoubletFinder.md +++ b/docs/version-specific/supported-software/d/DoubletFinder.md @@ -12,7 +12,6 @@ version | versionsuffix | toolchain --------|---------------|---------- ``2.0.3-20230131`` | ``-R-4.2.1`` | ``foss/2022a`` ``2.0.3-20230819`` | ``-R-4.2.2`` | ``foss/2022b`` -``2.0.3`` | ``-R-4.0.0`` | ``foss/2020a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/Doxygen.md b/docs/version-specific/supported-software/d/Doxygen.md index 3379d3902b..d69fbe3087 100644 --- a/docs/version-specific/supported-software/d/Doxygen.md +++ b/docs/version-specific/supported-software/d/Doxygen.md @@ -11,27 +11,7 @@ Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (C version | toolchain --------|---------- ``1.11.0`` | ``GCCcore/13.3.0`` -``1.8.10`` | ``GNU/4.9.3-2.25`` -``1.8.10`` | ``intel/2016.02-GCC-4.9`` -``1.8.11`` | ``GCC/4.9.2`` -``1.8.11`` | ``GCCcore/5.4.0`` -``1.8.11`` | ``foss/2016a`` -``1.8.11`` | ``foss/2016b`` -``1.8.11`` | ``intel/2016a`` -``1.8.11`` | ``intel/2016b`` -``1.8.11`` | ``iomkl/2016.07`` -``1.8.11`` | ``iomkl/2016.09-GCC-4.9.3-2.25`` -``1.8.13`` | ``GCCcore/6.3.0`` -``1.8.13`` | ``GCCcore/6.4.0`` -``1.8.13`` | ``gimkl/2017a`` -``1.8.14`` | ``GCCcore/6.4.0`` -``1.8.14`` | ``GCCcore/7.2.0`` -``1.8.14`` | ``GCCcore/7.3.0`` -``1.8.15`` | ``GCCcore/8.2.0`` -``1.8.16`` | ``GCCcore/8.3.0`` -``1.8.17`` | ``GCCcore/9.3.0`` ``1.8.20`` | ``GCCcore/10.2.0`` -``1.8.9.1`` | ``GCC/4.9.2`` ``1.9.1`` | ``GCCcore/10.3.0`` ``1.9.1`` | ``GCCcore/11.2.0`` ``1.9.4`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/d/Drake.md b/docs/version-specific/supported-software/d/Drake.md deleted file mode 100644 index 5d24bfea0b..0000000000 --- a/docs/version-specific/supported-software/d/Drake.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Drake - -Drake is a simple-to-use, extensible, text-based data workflow tool that organizes command execution around data and its dependencies. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.3`` | ``-Java-1.8`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/Dsuite.md b/docs/version-specific/supported-software/d/Dsuite.md index 52724404b1..72c2f22524 100644 --- a/docs/version-specific/supported-software/d/Dsuite.md +++ b/docs/version-specific/supported-software/d/Dsuite.md @@ -10,7 +10,6 @@ Fast calculation of the ABBA-BABA statistics across many populations/species version | toolchain --------|---------- -``20190713`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` ``20210718`` | ``GCC/10.3.0`` ``20210718`` | ``intel-compilers/2021.2.0`` diff --git a/docs/version-specific/supported-software/d/dadi.md b/docs/version-specific/supported-software/d/dadi.md deleted file mode 100644 index 4f8de69e24..0000000000 --- a/docs/version-specific/supported-software/d/dadi.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# dadi - -∂a∂i implements methods for demographic history and selection inference from genetic data, based on diffusion approximations to the allele frequency spectrum. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.7.0`` | ``-Python-2.7.12`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/dagitty.md b/docs/version-specific/supported-software/d/dagitty.md deleted file mode 100644 index 4881f63831..0000000000 --- a/docs/version-specific/supported-software/d/dagitty.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# dagitty - -A port of the web-based software 'DAGitty', available at , for analyzing structural causal models (also known as directed acyclic graphs or DAGs). This package computes covariate adjustment sets for estimating causal effects, enumerates instrumental variables, derives testable implications (d-separation and vanishing tetrads), generates equivalent models, and includes a simple facility for data simulation. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.2-2`` | ``-R-3.5.1`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/damageproto.md b/docs/version-specific/supported-software/d/damageproto.md deleted file mode 100644 index 13330c71a5..0000000000 --- a/docs/version-specific/supported-software/d/damageproto.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# damageproto - -X protocol and ancillary headers for xinerama - -*homepage*: - -version | toolchain ---------|---------- -``1.2.1`` | ``foss/2016a`` -``1.2.1`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/dammit.md b/docs/version-specific/supported-software/d/dammit.md deleted file mode 100644 index b8fd17eb50..0000000000 --- a/docs/version-specific/supported-software/d/dammit.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# dammit - -dammit is a simple de novo transcriptome annotator. It was born out of the observations that annotation is mundane and annoying, all the individual pieces of the process exist already, and the existing solutions are overly complicated or rely on crappy non-free software. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.3.2`` | ``-Python-2.7.13`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/dask.md b/docs/version-specific/supported-software/d/dask.md index 729e376e09..c35851ca42 100644 --- a/docs/version-specific/supported-software/d/dask.md +++ b/docs/version-specific/supported-software/d/dask.md @@ -4,52 +4,24 @@ search: --- # dask -Dask provides multi-core execution on larger-than-memory datasets using blocked algorithms and task scheduling. +Dask natively scales Python. Dask provides advanced parallelism for analytics, enabling performance at scale for the tools you love. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.11.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``0.11.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.11.0`` | ``-Python-3.5.2`` | ``intel/2016b`` -``0.12.0`` | ``-Python-3.5.2`` | ``foss/2016b`` -``0.12.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.12.0`` | ``-Python-3.5.2`` | ``intel/2016b`` -``0.16.0`` | ``-Python-2.7.14`` | ``foss/2017b`` -``0.16.0`` | ``-Python-3.6.3`` | ``foss/2017b`` -``0.16.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``0.16.0`` | ``-Python-3.6.3`` | ``intel/2017b`` -``0.17.0`` | ``-Python-2.7.13`` | ``foss/2017a`` -``0.17.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``0.17.0`` | ``-Python-3.6.1`` | ``intel/2017a`` -``0.17.2`` | ``-Python-3.6.4`` | ``foss/2018a`` -``0.17.2`` | ``-Python-3.6.4`` | ``intel/2018a`` -``0.19.4`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.19.4`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` -``0.19.4`` | ``-Python-3.6.6`` | ``intel/2018b`` -``0.8.2`` | ``-Python-2.7.11`` | ``intel/2016a`` -``0.8.2`` | ``-Python-3.5.1`` | ``intel/2016a`` -``1.0.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.0.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``1.1.4`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` -``2.18.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``2.18.1`` | ``-Python-3.8.2`` | ``intel/2020a`` -``2.3.0`` | ``-Python-3.7.2`` | ``foss/2019a`` -``2.8.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``2.8.0`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``2.8.0`` | ``-Python-3.7.4`` | ``intel/2019b`` -``2021.2.0`` | | ``foss/2020b`` -``2021.2.0`` | | ``fosscuda/2020b`` -``2021.2.0`` | | ``intel/2020b`` -``2021.2.0`` | | ``intelcuda/2020b`` -``2021.9.1`` | | ``foss/2021a`` -``2022.1.0`` | | ``foss/2021b`` -``2022.10.0`` | | ``foss/2022a`` -``2023.12.1`` | | ``foss/2023a`` -``2023.7.1`` | | ``foss/2022b`` -``2023.9.2`` | | ``foss/2023a`` -``2024.5.1`` | | ``gfbf/2023b`` +version | toolchain +--------|---------- +``2021.2.0`` | ``foss/2020b`` +``2021.2.0`` | ``fosscuda/2020b`` +``2021.2.0`` | ``intel/2020b`` +``2021.2.0`` | ``intelcuda/2020b`` +``2021.9.1`` | ``foss/2021a`` +``2022.1.0`` | ``foss/2021b`` +``2022.10.0`` | ``foss/2022a`` +``2023.12.1`` | ``foss/2023a`` +``2023.7.1`` | ``foss/2022b`` +``2023.9.2`` | ``foss/2023a`` +``2024.5.1`` | ``gfbf/2023b`` +``2024.9.1`` | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/datalad.md b/docs/version-specific/supported-software/d/datalad.md index 6ece7b30bf..79d611a02c 100644 --- a/docs/version-specific/supported-software/d/datalad.md +++ b/docs/version-specific/supported-software/d/datalad.md @@ -12,6 +12,8 @@ version | toolchain --------|---------- ``0.18.4`` | ``GCCcore/12.2.0`` ``0.19.5`` | ``GCCcore/12.3.0`` +``1.1.0`` | ``GCCcore/13.2.0`` +``1.1.3`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/datamash.md b/docs/version-specific/supported-software/d/datamash.md index 4c6ef594f1..c5c08005c6 100644 --- a/docs/version-specific/supported-software/d/datamash.md +++ b/docs/version-specific/supported-software/d/datamash.md @@ -10,10 +10,7 @@ GNU datamash performs basic numeric, textual and statistical operations on input version | toolchain --------|---------- -``1.3`` | ``foss/2018a`` ``1.5`` | ``GCCcore/10.2.0`` -``1.5`` | ``GCCcore/7.3.0`` -``1.5`` | ``GCCcore/8.3.0`` ``1.8`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/d/davix.md b/docs/version-specific/supported-software/d/davix.md deleted file mode 100644 index ba298a1f63..0000000000 --- a/docs/version-specific/supported-software/d/davix.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# davix - -The davix project aims to make file management over HTTP-based protocols simple. The focus is on high-performance remote I/O and data management of large collections of files. Currently, there is support for the WebDav (link is external), Amazon S3 (link is external), Microsoft Azure (link is external), and HTTP (link is external) protocols. - -*homepage*: - -version | toolchain ---------|---------- -``0.6.6`` | ``intel/2017a`` -``0.7.5`` | ``GCCcore/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/dbus-glib.md b/docs/version-specific/supported-software/d/dbus-glib.md index 13d75c84f8..b4b412a0ae 100644 --- a/docs/version-specific/supported-software/d/dbus-glib.md +++ b/docs/version-specific/supported-software/d/dbus-glib.md @@ -6,21 +6,14 @@ search: D-Bus is a message bus system, a simple way for applications to talk to one another. -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.106`` | ``foss/2016a`` -``0.106`` | ``intel/2016a`` -``0.108`` | ``intel/2016b`` -``0.108`` | ``intel/2017a`` -``0.110`` | ``GCCcore/7.3.0`` -``0.110`` | ``GCCcore/8.2.0`` -``0.110`` | ``GCCcore/8.3.0`` -``0.110`` | ``intel/2017b`` ``0.112`` | ``GCCcore/10.3.0`` ``0.112`` | ``GCCcore/11.2.0`` ``0.112`` | ``GCCcore/11.3.0`` +``0.112`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/dcm2niix.md b/docs/version-specific/supported-software/d/dcm2niix.md index 2ab2dfdadd..17bc3e4d04 100644 --- a/docs/version-specific/supported-software/d/dcm2niix.md +++ b/docs/version-specific/supported-software/d/dcm2niix.md @@ -4,21 +4,16 @@ search: --- # dcm2niix -dcm2niix is a designed program to convert neuroimaging data from the DICOM format to the NIfTI format. +dcm2niix is designed to convert neuroimaging data from the DICOM format to the NIfTI format. *homepage*: version | toolchain --------|---------- -``1.0.20180622`` | ``GCCcore/6.4.0`` -``1.0.20180622`` | ``GCCcore/7.3.0`` -``1.0.20190902`` | ``GCCcore/7.3.0`` -``1.0.20190902`` | ``GCCcore/8.2.0`` -``1.0.20200331`` | ``GCCcore/8.3.0`` -``1.0.20201102`` | ``GCCcore/8.3.0`` ``1.0.20211006`` | ``GCCcore/10.3.0`` ``1.0.20220720`` | ``GCCcore/11.3.0`` ``1.0.20230411`` | ``GCCcore/12.2.0`` +``1.0.20241211`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/dd.md b/docs/version-specific/supported-software/d/dd.md deleted file mode 100644 index b3a3723b33..0000000000 --- a/docs/version-specific/supported-software/d/dd.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# dd - -dd is a package for working with binary decision diagrams that includes both a pure Python implementation and Cython bindings to C libraries (CUDD, Sylvan, BuDDy). The Python and Cython modules implement the same API, so the same user code runs with both. All the standard operations on BDDs are available, including dynamic variable reordering using sifting, garbage collection, dump/load from files, plotting, and a parser of quantified Boolean expressions. This module includes bindings for: CUDD v3.0.0, Sylvan v1.0.0 - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.5.6`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/deal.II.md b/docs/version-specific/supported-software/d/deal.II.md index f8660de855..d59e529d7d 100644 --- a/docs/version-specific/supported-software/d/deal.II.md +++ b/docs/version-specific/supported-software/d/deal.II.md @@ -10,8 +10,6 @@ deal.II is a C++ program library targeted at the computational solution of part version | toolchain --------|---------- -``9.1.1`` | ``foss/2019a`` -``9.1.1`` | ``intel/2019a`` ``9.3.3`` | ``foss/2021a`` ``9.5.2`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/d/deap.md b/docs/version-specific/supported-software/d/deap.md deleted file mode 100644 index 60c5d52b0b..0000000000 --- a/docs/version-specific/supported-software/d/deap.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# deap - -DEAP is a novel evolutionary computation framework for rapid prototyping and testing of ideas. It seeks to make algorithms explicit and data structures transparent. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.9.2`` | ``-Python-2.7.12`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/decona.md b/docs/version-specific/supported-software/d/decona.md index 9eeed7ed04..dd659767be 100644 --- a/docs/version-specific/supported-software/d/decona.md +++ b/docs/version-specific/supported-software/d/decona.md @@ -8,10 +8,9 @@ fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanop *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1.2`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.4-20240731`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``1.4-20240731`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/deconf.md b/docs/version-specific/supported-software/d/deconf.md deleted file mode 100644 index 54a094eed8..0000000000 --- a/docs/version-specific/supported-software/d/deconf.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# deconf - -decomposition (deconfounding) of OMICS datasets in heterogeneous tissues - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.1`` | ``-R-3.5.1`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/deepTools.md b/docs/version-specific/supported-software/d/deepTools.md index 632b314b91..5410906369 100644 --- a/docs/version-specific/supported-software/d/deepTools.md +++ b/docs/version-specific/supported-software/d/deepTools.md @@ -6,17 +6,14 @@ search: deepTools is a suite of python tools particularly developed for the efficient analysis of high-throughput sequencing data, such as ChIP-seq, RNA-seq or MNase-seq. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.5.4`` | ``-Python-3.6.3`` | ``intel/2017b`` -``3.3.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``3.3.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``3.3.1`` | ``-Python-3.7.4`` | ``intel/2019b`` -``3.5.0`` | | ``foss/2021a`` -``3.5.1`` | | ``foss/2021b`` -``3.5.2`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``3.5.0`` | ``foss/2021a`` +``3.5.1`` | ``foss/2021b`` +``3.5.2`` | ``foss/2022a`` +``3.5.5`` | ``gfbf/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/deepdiff.md b/docs/version-specific/supported-software/d/deepdiff.md index 17415efe8a..0dd2f96733 100644 --- a/docs/version-specific/supported-software/d/deepdiff.md +++ b/docs/version-specific/supported-software/d/deepdiff.md @@ -6,19 +6,14 @@ search: DeepDiff: Deep Difference of dictionaries, iterables and almost any other object recursively. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.3.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``3.3.0`` | ``-Python-2.7.15`` | ``intel/2018b`` -``3.3.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``4.0.6`` | ``-Python-3.7.2`` | ``GCCcore/8.2.0`` -``5.0.2`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``5.7.0`` | | ``GCCcore/11.2.0`` -``5.8.1`` | | ``GCCcore/11.3.0`` -``6.7.1`` | | ``GCCcore/12.2.0`` -``6.7.1`` | | ``GCCcore/12.3.0`` +version | toolchain +--------|---------- +``5.7.0`` | ``GCCcore/11.2.0`` +``5.8.1`` | ``GCCcore/11.3.0`` +``6.7.1`` | ``GCCcore/12.2.0`` +``6.7.1`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/destiny.md b/docs/version-specific/supported-software/d/destiny.md deleted file mode 100644 index 7075b60aa8..0000000000 --- a/docs/version-specific/supported-software/d/destiny.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# destiny - -R packages to create and plot diffusion maps. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.5.6`` | ``-R-3.4.0`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/dftd3-lib.md b/docs/version-specific/supported-software/d/dftd3-lib.md index 792cf43900..a29834f625 100644 --- a/docs/version-specific/supported-software/d/dftd3-lib.md +++ b/docs/version-specific/supported-software/d/dftd3-lib.md @@ -10,7 +10,7 @@ This is a repackaged version of the DFTD3 program by S. Grimme and his coworkers version | toolchain --------|---------- -``0.9`` | ``GCC/8.3.0`` +``0.10`` | ``GCC/11.3.0`` ``0.9`` | ``intel-compilers/2021.2.0`` diff --git a/docs/version-specific/supported-software/d/dftd4.md b/docs/version-specific/supported-software/d/dftd4.md index 5ac23f7217..e2c81c0657 100644 --- a/docs/version-specific/supported-software/d/dftd4.md +++ b/docs/version-specific/supported-software/d/dftd4.md @@ -13,6 +13,7 @@ version | toolchain ``3.4.0`` | ``gfbf/2022b`` ``3.4.0`` | ``iimkl/2022b`` ``3.7.0`` | ``foss/2023a`` +``3.7.0`` | ``gfbf/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/dicom2nifti.md b/docs/version-specific/supported-software/d/dicom2nifti.md index c99a5632e1..298ecf995f 100644 --- a/docs/version-specific/supported-software/d/dicom2nifti.md +++ b/docs/version-specific/supported-software/d/dicom2nifti.md @@ -8,11 +8,10 @@ Python library for converting dicom files to nifti *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.2.12`` | ``-Python-3.8.2`` | ``foss/2020a`` -``2.3.0`` | | ``foss/2020b`` -``2.3.0`` | | ``fosscuda/2020b`` +version | toolchain +--------|---------- +``2.3.0`` | ``foss/2020b`` +``2.3.0`` | ``fosscuda/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/dijitso.md b/docs/version-specific/supported-software/d/dijitso.md deleted file mode 100644 index f427e1c163..0000000000 --- a/docs/version-specific/supported-software/d/dijitso.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# dijitso - -dijitso is a Python module for distributed just-in-time shared library building. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2019.1.0`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/dill.md b/docs/version-specific/supported-software/d/dill.md index e339da528c..72425377c8 100644 --- a/docs/version-specific/supported-software/d/dill.md +++ b/docs/version-specific/supported-software/d/dill.md @@ -10,14 +10,14 @@ dill extends python's pickle module for serializing and de-serializing python ob version | toolchain --------|---------- -``0.3.0`` | ``GCCcore/8.2.0`` ``0.3.3`` | ``GCCcore/10.2.0`` -``0.3.3`` | ``GCCcore/8.3.0`` ``0.3.4`` | ``GCCcore/10.3.0`` ``0.3.4`` | ``GCCcore/11.2.0`` ``0.3.6`` | ``GCCcore/11.3.0`` ``0.3.7`` | ``GCCcore/12.2.0`` ``0.3.7`` | ``GCCcore/12.3.0`` +``0.3.8`` | ``GCCcore/13.2.0`` +``0.3.9`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/distributed.md b/docs/version-specific/supported-software/d/distributed.md deleted file mode 100644 index 1cdf73a379..0000000000 --- a/docs/version-specific/supported-software/d/distributed.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# distributed - -Dask.distributed is a lightweight library for distributed computing in Python. It extends both the concurrent.futures and dask APIs to moderate sized clusters. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.14.3`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.14.3`` | ``-Python-3.5.2`` | ``intel/2016b`` -``1.21.6`` | ``-Python-3.6.4`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/dlib.md b/docs/version-specific/supported-software/d/dlib.md index c27f9108fa..64c415e676 100644 --- a/docs/version-specific/supported-software/d/dlib.md +++ b/docs/version-specific/supported-software/d/dlib.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``19.22`` | ``-CUDA-11.3.1`` | ``foss/2021a`` ``19.22`` | | ``foss/2021a`` +``19.24.6`` | ``-CUDA-12.1.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/dm-control.md b/docs/version-specific/supported-software/d/dm-control.md new file mode 100644 index 0000000000..5bfacfd877 --- /dev/null +++ b/docs/version-specific/supported-software/d/dm-control.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# dm-control + +DeepMind's software stack for physics-based simulation and Reinforcement Learning environments, using MuJoCo physics. + +*homepage*: + +version | toolchain +--------|---------- +``1.0.18`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/d/dm-haiku.md b/docs/version-specific/supported-software/d/dm-haiku.md index e5eb23a692..751bc753d0 100644 --- a/docs/version-specific/supported-software/d/dm-haiku.md +++ b/docs/version-specific/supported-software/d/dm-haiku.md @@ -10,6 +10,8 @@ Haiku is a simple neural network library for JAX developed by some of the author version | versionsuffix | toolchain --------|---------------|---------- +``0.0.12`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``0.0.13`` | | ``foss/2023a`` ``0.0.9`` | ``-CUDA-11.3.1`` | ``foss/2021a`` ``0.0.9`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``0.0.9`` | | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/d/dm-tree.md b/docs/version-specific/supported-software/d/dm-tree.md index 15f25baa59..eef80682d5 100644 --- a/docs/version-specific/supported-software/d/dm-tree.md +++ b/docs/version-specific/supported-software/d/dm-tree.md @@ -10,7 +10,6 @@ dm-tree provides tree, a library for working with nested data structures. In a w version | toolchain --------|---------- -``0.1.1`` | ``GCCcore/8.3.0`` ``0.1.5`` | ``GCCcore/10.2.0`` ``0.1.6`` | ``GCCcore/10.3.0`` ``0.1.6`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/d/dorado.md b/docs/version-specific/supported-software/d/dorado.md index cc02c216aa..ea75accf40 100644 --- a/docs/version-specific/supported-software/d/dorado.md +++ b/docs/version-specific/supported-software/d/dorado.md @@ -17,6 +17,10 @@ version | versionsuffix | toolchain ``0.5.3`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``0.6.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``0.7.3`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``0.8.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``0.8.3`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``0.9.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``0.9.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/dotNET-Core-Runtime.md b/docs/version-specific/supported-software/d/dotNET-Core-Runtime.md deleted file mode 100644 index 4701e063a1..0000000000 --- a/docs/version-specific/supported-software/d/dotNET-Core-Runtime.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# dotNET-Core-Runtime - -.NET is a free, cross-platform, open source developer platform for building many different types of applications. - -*homepage*: - -version | toolchain ---------|---------- -``2.0.7`` | ``GCCcore/6.4.0`` -``5.0.17`` | ``GCCcore/10.3.0`` -``6.0.1`` | ``GCCcore/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/dotNET-Core.md b/docs/version-specific/supported-software/d/dotNET-Core.md index 9c7a7de01a..3df280b12f 100644 --- a/docs/version-specific/supported-software/d/dotNET-Core.md +++ b/docs/version-specific/supported-software/d/dotNET-Core.md @@ -13,6 +13,7 @@ version | toolchain ``6.0.420`` | ``system`` ``6.0`` | ``system`` ``8.0.203`` | ``system`` +``8.0.302`` | ``system`` ``8.0`` | ``system`` diff --git a/docs/version-specific/supported-software/d/dotNET-SDK.md b/docs/version-specific/supported-software/d/dotNET-SDK.md deleted file mode 100644 index a3eb92bba1..0000000000 --- a/docs/version-specific/supported-software/d/dotNET-SDK.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# dotNET-SDK - -.NET is a free, cross-platform, open source developer platform for building many different types of applications. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.1.300`` | ``-linux-x64`` | ``system`` -``6.0.101`` | ``-linux-x64`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/double-conversion.md b/docs/version-specific/supported-software/d/double-conversion.md index 0b53524f14..1bc57b7045 100644 --- a/docs/version-specific/supported-software/d/double-conversion.md +++ b/docs/version-specific/supported-software/d/double-conversion.md @@ -10,17 +10,14 @@ Efficient binary-decimal and decimal-binary conversion routines for IEEE doubles version | toolchain --------|---------- -``3.0.3`` | ``foss/2018a`` -``3.1.4`` | ``GCCcore/8.2.0`` -``3.1.4`` | ``GCCcore/8.3.0`` ``3.1.5`` | ``GCCcore/10.2.0`` ``3.1.5`` | ``GCCcore/10.3.0`` ``3.1.5`` | ``GCCcore/11.2.0`` -``3.1.5`` | ``GCCcore/9.3.0`` ``3.2.0`` | ``GCCcore/11.3.0`` ``3.2.1`` | ``GCCcore/12.2.0`` ``3.3.0`` | ``GCCcore/12.3.0`` ``3.3.0`` | ``GCCcore/13.2.0`` +``3.3.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/draco.md b/docs/version-specific/supported-software/d/draco.md new file mode 100644 index 0000000000..921d62a852 --- /dev/null +++ b/docs/version-specific/supported-software/d/draco.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# draco + +"Draco is a library for compressing and decompressing 3D geometric meshes and point clouds. It is intended to improve the storage and transmission of 3D graphics. + +*homepage*: + +version | toolchain +--------|---------- +``1.5.7`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/d/dropEst.md b/docs/version-specific/supported-software/d/dropEst.md deleted file mode 100644 index a8ecb67780..0000000000 --- a/docs/version-specific/supported-software/d/dropEst.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# dropEst - -Pipeline for initial analysis of droplet-based single-cell RNA-seq data - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.7.1`` | ``-R-3.4.3`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/dtcmp.md b/docs/version-specific/supported-software/d/dtcmp.md index 35827dd43f..9128ded20d 100644 --- a/docs/version-specific/supported-software/d/dtcmp.md +++ b/docs/version-specific/supported-software/d/dtcmp.md @@ -4,16 +4,12 @@ search: --- # dtcmp -Datatype Compare (DTCMP) Library for sorting and ranking distributed data using MPI +The Datatype Comparison (DTCMP) Library provides pre-defined and user-defined comparison operations to compare the values of two items which can be arbitrary MPI datatypes. Using these comparison operations, the library provides various routines for manipulating data, which may be distributed over the processes of an MPI communicator. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.1.0`` | ``gompi/2019a`` -``1.1.0`` | ``gompi/2020a`` -``1.1.0`` | ``iimpi/2019a`` -``1.1.0`` | ``iimpi/2020a`` ``1.1.2`` | ``gompi/2020b`` ``1.1.4`` | ``gompi/2022a`` ``1.1.4`` | ``gompi/2023a`` diff --git a/docs/version-specific/supported-software/d/dtcwt.md b/docs/version-specific/supported-software/d/dtcwt.md deleted file mode 100644 index b2eae35ce4..0000000000 --- a/docs/version-specific/supported-software/d/dtcwt.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# dtcwt - -Dual-Tree Complex Wavelet Transform library for Python - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.12.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``0.12.0`` | ``-Python-3.7.4`` | ``intel/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/dune-core.md b/docs/version-specific/supported-software/d/dune-core.md index a642290c6d..0d5146de20 100644 --- a/docs/version-specific/supported-software/d/dune-core.md +++ b/docs/version-specific/supported-software/d/dune-core.md @@ -4,7 +4,7 @@ search: --- # dune-core -The Dune core modules build the stable basis of Dune. They follow a consistent release cycle and have high requirements regarding stability and backwards compatibility. These modules build the foundation for higher-level components. +The Dune core modules build the stable basis of Dune. They follow a consistent release cycle and have high requirements regarding stability and backwards compatibility. These modules build the foundation for higher-level components. *homepage*: diff --git a/docs/version-specific/supported-software/d/dxpy.md b/docs/version-specific/supported-software/d/dxpy.md index 63488287f1..521b428374 100644 --- a/docs/version-specific/supported-software/d/dxpy.md +++ b/docs/version-specific/supported-software/d/dxpy.md @@ -8,10 +8,9 @@ DNAnexus Platform API bindings for Python *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.266.1`` | ``-Python-2.7.14`` | ``intel/2018a`` -``0.345.0`` | | ``GCCcore/12.2.0`` +version | toolchain +--------|---------- +``0.345.0`` | ``GCCcore/12.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/index.md b/docs/version-specific/supported-software/d/index.md index 04b3b9f681..d5e438b999 100644 --- a/docs/version-specific/supported-software/d/index.md +++ b/docs/version-specific/supported-software/d/index.md @@ -8,21 +8,16 @@ search: - * [dadi](dadi.md) - * [dagitty](dagitty.md) * [Dakota](Dakota.md) * [DALI](DALI.md) * [DaliLite](DaliLite.md) * [Dalton](Dalton.md) - * [damageproto](damageproto.md) - * [dammit](dammit.md) - * [DANPOS2](DANPOS2.md) * [DAS_Tool](DAS_Tool.md) * [dask](dask.md) * [dask-labextension](dask-labextension.md) + * [Dask-ML](Dask-ML.md) * [datalad](datalad.md) * [datamash](datamash.md) - * [davix](davix.md) * [DB](DB.md) * [DB_File](DB_File.md) * [DBCSR](DBCSR.md) @@ -34,36 +29,30 @@ search: * [dclone](dclone.md) * [dcm2niix](dcm2niix.md) * [DCMTK](DCMTK.md) - * [dd](dd.md) * [deal.II](deal.II.md) - * [deap](deap.md) + * [DECAF-synthetic-data](DECAF-synthetic-data.md) * [decona](decona.md) - * [deconf](deconf.md) - * [DeconICA](DeconICA.md) * [deepdiff](deepdiff.md) + * [DeepDRR](DeepDRR.md) * [deepfold](deepfold.md) * [DeepLabCut](DeepLabCut.md) * [DeepLoc](DeepLoc.md) * [deepmedic](deepmedic.md) * [DeepMod2](DeepMod2.md) - * [DeepSurv](DeepSurv.md) * [deepTools](deepTools.md) * [DEICODE](DEICODE.md) * [Delft3D](Delft3D.md) * [Delly](Delly.md) * [DeltaLake](DeltaLake.md) - * [DeMixT](DeMixT.md) * [Demystify](Demystify.md) * [DendroPy](DendroPy.md) * [denseweight](denseweight.md) * [DensPart](DensPart.md) * [Deprecated](Deprecated.md) * [desktop-file-utils](desktop-file-utils.md) - * [destiny](destiny.md) * [Detectron2](Detectron2.md) * [DETONATE](DETONATE.md) * [devbio-napari](devbio-napari.md) - * [Devito](Devito.md) * [DFA](DFA.md) * [DFT-D3](DFT-D3.md) * [DFT-D4](DFT-D4.md) @@ -72,59 +61,45 @@ search: * [dftd4](dftd4.md) * [DGL](DGL.md) * [DIA-NN](DIA-NN.md) - * [DIAL](DIAL.md) * [dialog](dialog.md) * [DIALOGUE](DIALOGUE.md) * [DIAMOND](DIAMOND.md) * [Dice](Dice.md) * [DiCE-ML](DiCE-ML.md) * [dicom2nifti](dicom2nifti.md) - * [DicomBrowser](DicomBrowser.md) * [dictys](dictys.md) * [DiffBind](DiffBind.md) - * [Diffutils](Diffutils.md) - * [dijitso](dijitso.md) * [dill](dill.md) * [DIRAC](DIRAC.md) - * [distributed](distributed.md) * [DistributedStream](DistributedStream.md) * [DjVuLibre](DjVuLibre.md) * [DL_POLY_4](DL_POLY_4.md) - * [DL_POLY_Classic](DL_POLY_Classic.md) * [DL_POLY_Classic_GUI](DL_POLY_Classic_GUI.md) * [dlb](dlb.md) * [dlib](dlib.md) * [DLPack](DLPack.md) + * [dm-control](dm-control.md) * [dm-haiku](dm-haiku.md) * [dm-reverb](dm-reverb.md) * [dm-tree](dm-tree.md) - * [DMCfun](DMCfun.md) * [DMLC-Core](DMLC-Core.md) * [DMTCP](DMTCP.md) - * [DOLFIN](DOLFIN.md) * [dominate](dominate.md) * [dorado](dorado.md) - * [Doris](Doris.md) * [DosageConvertor](DosageConvertor.md) * [dotNET-Core](dotNET-Core.md) - * [dotNET-Core-Runtime](dotNET-Core-Runtime.md) - * [dotNET-SDK](dotNET-SDK.md) * [double-conversion](double-conversion.md) * [DoubletFinder](DoubletFinder.md) * [Doxygen](Doxygen.md) * [DP3](DP3.md) + * [draco](draco.md) * [DRAGMAP](DRAGMAP.md) - * [Drake](Drake.md) * [dRep](dRep.md) * [drmaa-python](drmaa-python.md) * [DROP](DROP.md) - * [dropEst](dropEst.md) - * [DSA](DSA.md) * [dSFMT](dSFMT.md) - * [DSRC](DSRC.md) * [Dsuite](Dsuite.md) * [dtcmp](dtcmp.md) - * [dtcwt](dtcwt.md) * [DualSPHysics](DualSPHysics.md) * [dub](dub.md) * [DUBStepR](DUBStepR.md) diff --git a/docs/version-specific/supported-software/e/E-ANTIC.md b/docs/version-specific/supported-software/e/E-ANTIC.md index beaaf55265..33cdc2dbd9 100644 --- a/docs/version-specific/supported-software/e/E-ANTIC.md +++ b/docs/version-specific/supported-software/e/E-ANTIC.md @@ -6,12 +6,10 @@ search: E-ANTIC is a C/C++ library to deal with real embedded number fields built on top of ANTIC (https://github.com/wbhart/antic). Its aim is to have as fast as possible exact arithmetic operations and comparisons. -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.1.2`` | ``GCC/8.2.0-2.31.1`` -``0.1.5`` | ``GCC/8.3.0`` ``1.3.0`` | ``gfbf/2022a`` ``2.0.2`` | ``gfbf/2023b`` diff --git a/docs/version-specific/supported-software/e/ED2.md b/docs/version-specific/supported-software/e/ED2.md deleted file mode 100644 index 2af91262cf..0000000000 --- a/docs/version-specific/supported-software/e/ED2.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ED2 - -The Ecosystem Demography Biosphere Model (ED2) is an integrated terrestrial biosphere model incorporating hydrology, land-surface biophysics, vegetation dynamics, and soil carbon and nitrogen biogeochemistry - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20170201`` | ``-serial`` | ``intel/2017a`` -``20170201`` | | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/e/EIGENSOFT.md b/docs/version-specific/supported-software/e/EIGENSOFT.md index 9da97474dd..95b00201a3 100644 --- a/docs/version-specific/supported-software/e/EIGENSOFT.md +++ b/docs/version-specific/supported-software/e/EIGENSOFT.md @@ -4,21 +4,14 @@ search: --- # EIGENSOFT -The EIGENSOFT package combines functionality from our population genetics methods (Patterson et al. 2006) and our EIGENSTRAT stratification correction method (Price et al. 2006). The EIGENSTRAT method uses principal components analysis to explicitly model ancestry differences between cases and controls along continuous axes of variation; the resulting correction is specific to a candidate marker’s variation in frequency across ancestral populations, minimizing spurious associations while maximizing power to detect true associations. The EIGENSOFT package has a built-in plotting script and supports multiple file formats and quantitative phenotypes. +The EIGENSOFT package combines functionality from our population genetics methods (Patterson et al. 2006) and our EIGENSTRAT stratification correction method (Price et al. 2006). The EIGENSTRAT method uses principal components analysis to explicitly model ancestry differences between cases and controls along continuous axes of variation; the resulting correction is specific to a candidate marker’s variation in frequency across ancestral populations, minimizing spurious associations while maximizing power to detect true associations. The EIGENSOFT package has a built-in plotting script and supports multiple file formats and quantitative phenotypes. -*homepage*: +*homepage*: version | toolchain --------|---------- -``6.0.1`` | ``foss/2016a`` -``6.1.1`` | ``foss/2016a`` -``6.1.4`` | ``foss/2016b`` -``7.2.1`` | ``foss/2018b`` -``7.2.1`` | ``foss/2019a`` -``7.2.1`` | ``foss/2019b`` ``7.2.1`` | ``foss/2020b`` ``7.2.1`` | ``foss/2021a`` -``7.2.1`` | ``intel/2019a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/ELPA.md b/docs/version-specific/supported-software/e/ELPA.md index f71f8873d0..79028e513b 100644 --- a/docs/version-specific/supported-software/e/ELPA.md +++ b/docs/version-specific/supported-software/e/ELPA.md @@ -6,29 +6,10 @@ search: Eigenvalue SoLvers for Petaflop-Applications . -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2015.02.002`` | | ``foss/2018a`` -``2015.02.002`` | | ``gimkl/2017a`` -``2015.02.002`` | | ``intel/2018a`` -``2016.05.004`` | | ``intel/2016b`` -``2016.05.004`` | | ``intel/2017a`` -``2016.11.001.pre`` | | ``foss/2018b`` -``2016.11.001.pre`` | | ``intel/2018b`` -``2017.11.001`` | | ``foss/2018b`` -``2017.11.001`` | | ``intel/2018a`` -``2017.11.001`` | | ``intel/2018b`` -``2018.05.001`` | | ``foss/2018b`` -``2018.05.001`` | | ``intel/2018b`` -``2018.11.001`` | | ``intel/2019a`` -``2019.11.001`` | | ``foss/2019b`` -``2019.11.001`` | | ``foss/2020a`` -``2019.11.001`` | | ``intel/2019b`` -``2019.11.001`` | | ``intel/2020a`` -``2019.11.001`` | | ``iomkl/2019b`` -``2020.05.001`` | | ``intel/2020a`` ``2020.11.001`` | | ``foss/2020b`` ``2020.11.001`` | | ``intel/2020b`` ``2021.05.001`` | | ``foss/2021a`` @@ -51,6 +32,8 @@ version | versionsuffix | toolchain ``2023.05.001`` | | ``intel/2023a`` ``2023.11.001`` | | ``foss/2023b`` ``2023.11.001`` | | ``intel/2023b`` +``2024.05.001`` | | ``foss/2024a`` +``2024.05.001`` | | ``intel/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/ELPH.md b/docs/version-specific/supported-software/e/ELPH.md deleted file mode 100644 index f57ca76785..0000000000 --- a/docs/version-specific/supported-software/e/ELPH.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ELPH - -ELPH is a general-purpose Gibbs sampler for finding motifs in a set of DNA or protein sequences. The program takes as input a set containing anywhere from a few dozen to thousands of sequences, and searches through them for the most common motif, assuming that each sequence contains one copy of the motif. We have used ELPH to find patterns such as ribosome binding sites (RBSs) and exon splicing enhancers (ESEs). - -*homepage*: - -version | toolchain ---------|---------- -``1.0.1`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/e/ELSI.md b/docs/version-specific/supported-software/e/ELSI.md index 28d426b28d..8aab11cee1 100644 --- a/docs/version-specific/supported-software/e/ELSI.md +++ b/docs/version-specific/supported-software/e/ELSI.md @@ -11,10 +11,6 @@ ELSI provides and enhances scalable, open-source software library solutions for version | versionsuffix | toolchain --------|---------------|---------- ``2.11.0`` | ``-PEXSI`` | ``foss/2023a`` -``2.5.0`` | ``-PEXSI`` | ``foss/2019b`` -``2.5.0`` | | ``foss/2019b`` -``2.5.0`` | ``-PEXSI`` | ``intel/2019b`` -``2.5.0`` | | ``intel/2019b`` ``2.6.4`` | ``-PEXSI`` | ``foss/2020b`` ``2.6.4`` | ``-PEXSI`` | ``intel/2020b`` ``2.7.1`` | ``-PEXSI`` | ``foss/2021a`` diff --git a/docs/version-specific/supported-software/e/EMAN2.md b/docs/version-specific/supported-software/e/EMAN2.md deleted file mode 100644 index 14a51e840e..0000000000 --- a/docs/version-specific/supported-software/e/EMAN2.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# EMAN2 - -EMAN2 is the successor to EMAN1. It is a broadly based greyscale scientific image processing suite with a primary focus on processing data from transmission electron microscopes. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.21a`` | ``-Python-2.7.14-Boost-1.63.0`` | ``foss/2018a`` -``2.3`` | ``-Python-2.7.15`` | ``foss/2019a`` -``2.3`` | ``-Python-2.7.15`` | ``fosscuda/2019a`` -``2.3`` | | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/e/EMBOSS.md b/docs/version-specific/supported-software/e/EMBOSS.md index 1e89907317..938828d7a7 100644 --- a/docs/version-specific/supported-software/e/EMBOSS.md +++ b/docs/version-specific/supported-software/e/EMBOSS.md @@ -11,16 +11,8 @@ EMBOSS is 'The European Molecular Biology Open Software Suite' . EMBOSS is a fre version | versionsuffix | toolchain --------|---------------|---------- ``6.6.0`` | ``-Java-13`` | ``GCC/10.2.0`` -``6.6.0`` | | ``GCC/8.2.0-2.31.1`` -``6.6.0`` | ``-Java-11`` | ``GCC/8.3.0`` -``6.6.0`` | | ``foss/2016b`` -``6.6.0`` | | ``foss/2018b`` ``6.6.0`` | | ``foss/2021a`` ``6.6.0`` | | ``foss/2021b`` -``6.6.0`` | | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``6.6.0`` | ``-X11-20170314`` | ``intel/2017a`` -``6.6.0`` | | ``intel/2017a`` -``6.6.0`` | | ``intel/2018b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/EMMAX.md b/docs/version-specific/supported-software/e/EMMAX.md index 58b2d45330..34431c0000 100644 --- a/docs/version-specific/supported-software/e/EMMAX.md +++ b/docs/version-specific/supported-software/e/EMMAX.md @@ -8,9 +8,10 @@ EMMAX is a statistical test for large scale human or model organism associatio *homepage*: -version | toolchain ---------|---------- -``20100310`` | ``foss/2023a`` +version | versionsuffix | toolchain +--------|---------------|---------- +``20100310`` | | ``foss/2023a`` +``20120210`` | ``-intel-binary`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/EMU.md b/docs/version-specific/supported-software/e/EMU.md deleted file mode 100644 index 6ef38ee01e..0000000000 --- a/docs/version-specific/supported-software/e/EMU.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# EMU - -EMU infers population structure in the presence of missingness and works for both haploid, psuedo-haploid and diploid genotype datasets - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.66`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/e/EPD.md b/docs/version-specific/supported-software/e/EPD.md deleted file mode 100644 index 8c6c094013..0000000000 --- a/docs/version-specific/supported-software/e/EPD.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# EPD - -The Enthought Python Distribution provides scientists with a comprehensive set of tools to perform rigorous data analysis and visualization. Python, distinguished by its flexibility, coherence, and ease-of-use, is rapidly becoming the programming language of choice for researchers worldwide. EPD extends this capacity with a powerful collection of Python libraries to enable interactive technical computing and cross-platform rapid application development. - -*homepage*: - -version | toolchain ---------|---------- -``7.3-2-rh5`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/e/EPIC.md b/docs/version-specific/supported-software/e/EPIC.md deleted file mode 100644 index c8a40cb620..0000000000 --- a/docs/version-specific/supported-software/e/EPIC.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# EPIC - -Package implementing EPIC method to estimate the proportion of immune, stromal, endothelial and cancer or other cells from bulk gene expression data. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1`` | ``-R-3.5.1`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/e/ESIpy.md b/docs/version-specific/supported-software/e/ESIpy.md index 122ee5f3e3..e56bcf119d 100644 --- a/docs/version-specific/supported-software/e/ESIpy.md +++ b/docs/version-specific/supported-software/e/ESIpy.md @@ -10,7 +10,7 @@ Program aimed at the calculation of population analysis and aromaticity indicato version | toolchain --------|---------- -``20240709`` | ``foss/2022a`` +``20240731`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/ESM-2.md b/docs/version-specific/supported-software/e/ESM-2.md index ba4568d021..b415e44220 100644 --- a/docs/version-specific/supported-software/e/ESM-2.md +++ b/docs/version-specific/supported-software/e/ESM-2.md @@ -14,6 +14,7 @@ version | versionsuffix | toolchain ``2.0.0`` | | ``foss/2021a`` ``2.0.0`` | | ``foss/2022b`` ``2.0.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``2.0.0`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/ESMF.md b/docs/version-specific/supported-software/e/ESMF.md index 3167d041d2..922b721a26 100644 --- a/docs/version-specific/supported-software/e/ESMF.md +++ b/docs/version-specific/supported-software/e/ESMF.md @@ -4,36 +4,24 @@ search: --- # ESMF -The Earth System Modeling Framework (ESMF) is software for building and coupling weather, climate, and related models. +The Earth System Modeling Framework (ESMF) is a suite of software tools for developing high-performance, multi-component Earth science modeling applications. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``6.3.0rp1`` | ``-HDF5-1.8.18`` | ``intel/2017a`` -``6.3.0rp1`` | | ``intel/2017a`` -``7.0.0`` | | ``foss/2016a`` -``7.0.2`` | | ``intel/2017b`` -``7.1.0r`` | | ``foss/2018b`` -``7.1.0r`` | | ``foss/2019a`` -``7.1.0r`` | | ``intel/2018a`` -``7.1.0r`` | | ``intel/2018b`` -``7.1.0r`` | | ``iomkl/2018b`` -``8.0.0`` | | ``foss/2019b`` -``8.0.0`` | | ``intel/2019b`` -``8.0.1`` | | ``foss/2020a`` -``8.0.1`` | | ``foss/2020b`` -``8.0.1`` | | ``intel/2020a`` -``8.0.1`` | | ``intel/2020b`` -``8.1.1`` | | ``foss/2021a`` -``8.1.1`` | | ``intel/2021a`` -``8.2.0`` | | ``foss/2021b`` -``8.2.0`` | | ``intel/2021b`` -``8.3.0`` | | ``foss/2022a`` -``8.3.0`` | | ``intel/2022a`` -``8.4.2`` | | ``foss/2022a`` -``8.6.0`` | | ``foss/2023a`` -``8.6.1`` | | ``foss/2023b`` +version | toolchain +--------|---------- +``8.0.1`` | ``foss/2020b`` +``8.0.1`` | ``intel/2020b`` +``8.1.1`` | ``foss/2021a`` +``8.1.1`` | ``intel/2021a`` +``8.2.0`` | ``foss/2021b`` +``8.2.0`` | ``intel/2021b`` +``8.3.0`` | ``foss/2022a`` +``8.3.0`` | ``intel/2022a`` +``8.4.2`` | ``foss/2022a`` +``8.6.0`` | ``foss/2023a`` +``8.6.1`` | ``foss/2023b`` +``8.7.0`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/ESMPy.md b/docs/version-specific/supported-software/e/ESMPy.md index 9fa58c3b7b..d09ec14f4f 100644 --- a/docs/version-specific/supported-software/e/ESMPy.md +++ b/docs/version-specific/supported-software/e/ESMPy.md @@ -8,11 +8,10 @@ Earth System Modeling Framework (ESMF) Python Interface *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``8.0.0`` | ``-Python-3.7.4`` | ``intel/2019b`` -``8.0.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``8.0.1`` | | ``intel/2020b`` +version | toolchain +--------|---------- +``8.0.1`` | ``intel/2020b`` +``8.6.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/ESMValTool.md b/docs/version-specific/supported-software/e/ESMValTool.md deleted file mode 100644 index 268383fe7a..0000000000 --- a/docs/version-specific/supported-software/e/ESMValTool.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ESMValTool - -The Earth System Model eValuation Tool (ESMValTool) is a community diagnostics and performance metrics tool for the evaluation of Earth System Models (ESMs) that allows for routine comparison of single or multiple models, either against predecessor versions or against observations. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.0`` | ``-Python-2.7.14`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/e/ESPResSo.md b/docs/version-specific/supported-software/e/ESPResSo.md index 06198b30f6..c49b0e1c6b 100644 --- a/docs/version-specific/supported-software/e/ESPResSo.md +++ b/docs/version-specific/supported-software/e/ESPResSo.md @@ -15,6 +15,7 @@ version | versionsuffix | toolchain ``4.2.1`` | ``-CUDA-11.8.0`` | ``foss/2022a`` ``4.2.1`` | | ``foss/2022a`` ``4.2.1`` | | ``foss/2023a`` +``4.2.2`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``4.2.2`` | | ``foss/2023a`` ``4.2.2`` | | ``foss/2023b`` diff --git a/docs/version-specific/supported-software/e/ETE.md b/docs/version-specific/supported-software/e/ETE.md index cb9eca8c59..3d9a5ddb7e 100644 --- a/docs/version-specific/supported-software/e/ETE.md +++ b/docs/version-specific/supported-software/e/ETE.md @@ -8,17 +8,13 @@ A Python framework for the analysis and visualization of trees *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0.0b36`` | ``-Python-2.7.12`` | ``intel/2016b`` -``3.1.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``3.1.2`` | ``-Python-3.7.4`` | ``foss/2019b`` -``3.1.2`` | ``-Python-3.8.2`` | ``foss/2020a`` -``3.1.2`` | | ``foss/2020b`` -``3.1.2`` | | ``foss/2021a`` -``3.1.2`` | | ``foss/2021b`` -``3.1.3`` | | ``foss/2022b`` -``3.1.3`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``3.1.2`` | ``foss/2020b`` +``3.1.2`` | ``foss/2021a`` +``3.1.2`` | ``foss/2021b`` +``3.1.3`` | ``foss/2022b`` +``3.1.3`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/ETSF_IO.md b/docs/version-specific/supported-software/e/ETSF_IO.md deleted file mode 100644 index 217f43cc93..0000000000 --- a/docs/version-specific/supported-software/e/ETSF_IO.md +++ /dev/null @@ -1,22 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ETSF_IO - -A library of F90 routines to read/write the ETSF file format has been written. It is called ETSF_IO and available under LGPL. - -*homepage*: - -version | toolchain ---------|---------- -``1.0.4`` | ``foss/2017b`` -``1.0.4`` | ``foss/2018a`` -``1.0.4`` | ``foss/2018b`` -``1.0.4`` | ``intel/2017b`` -``1.0.4`` | ``intel/2018a`` -``1.0.4`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/AtomPAW.md b/docs/version-specific/supported-software/e/EVidenceModeler.md similarity index 72% rename from docs/version-specific/supported-software/a/AtomPAW.md rename to docs/version-specific/supported-software/e/EVidenceModeler.md index 1cca5335ef..8aebd71313 100644 --- a/docs/version-specific/supported-software/a/AtomPAW.md +++ b/docs/version-specific/supported-software/e/EVidenceModeler.md @@ -2,16 +2,15 @@ search: boost: 0.5 --- -# AtomPAW +# EVidenceModeler -AtomPAW is a Projector-Augmented Wave Dataset Generator that can be used both as a standalone program and a library. +EVM provides a flexible and intuitive framework for combining diverse evidence types into a single automated gene structure annotation system. -*homepage*: +*homepage*: version | toolchain --------|---------- -``4.1.0.5`` | ``intel/2018b`` -``4.1.0.6`` | ``intel/2018b`` +``2.1.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/EZC3D.md b/docs/version-specific/supported-software/e/EZC3D.md index 65de0ebacf..05def979c8 100644 --- a/docs/version-specific/supported-software/e/EZC3D.md +++ b/docs/version-specific/supported-software/e/EZC3D.md @@ -4,7 +4,7 @@ search: --- # EZC3D -EZC3D is an easy to use reader, modifier and writer for C3D format files. It is written en C++ with proper binders for Python and MATLAB/Octave scripting langages. +EZC3D is an easy to use reader, modifier and writer for C3D format files. It is written en C++ with proper binders for Python and MATLAB/Octave scripting languages. *homepage*: diff --git a/docs/version-specific/supported-software/e/EasyBuild.md b/docs/version-specific/supported-software/e/EasyBuild.md index 6accf55273..4991615374 100644 --- a/docs/version-specific/supported-software/e/EasyBuild.md +++ b/docs/version-specific/supported-software/e/EasyBuild.md @@ -6,81 +6,12 @@ search: EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.0.0`` | ``system`` -``1.0.1`` | ``system`` -``1.0.2`` | ``system`` -``1.1.0`` | ``system`` -``1.10.0`` | ``system`` -``1.11.0`` | ``system`` -``1.11.1`` | ``system`` -``1.12.0`` | ``system`` -``1.12.1`` | ``system`` -``1.13.0`` | ``system`` -``1.14.0`` | ``system`` -``1.15.0`` | ``system`` -``1.15.1`` | ``system`` -``1.15.2`` | ``system`` -``1.16.0`` | ``system`` -``1.16.1`` | ``system`` -``1.16.2`` | ``system`` -``1.2.0`` | ``system`` -``1.3.0`` | ``system`` -``1.4.0`` | ``system`` -``1.5.0`` | ``system`` -``1.6.0`` | ``system`` -``1.7.0`` | ``system`` -``1.8.0`` | ``system`` -``1.8.1`` | ``system`` -``1.8.2`` | ``system`` -``1.9.0`` | ``system`` -``2.0.0`` | ``system`` -``2.1.0`` | ``system`` -``2.1.1`` | ``system`` -``2.2.0`` | ``system`` -``2.3.0`` | ``system`` -``2.4.0`` | ``system`` -``2.5.0`` | ``system`` -``2.6.0`` | ``system`` -``2.7.0`` | ``system`` -``2.8.0`` | ``system`` -``2.8.1`` | ``system`` -``2.8.2`` | ``system`` -``2.9.0`` | ``system`` -``3.0.0`` | ``system`` -``3.0.1`` | ``system`` -``3.0.2`` | ``system`` -``3.1.0`` | ``system`` -``3.1.1`` | ``system`` -``3.1.2`` | ``system`` -``3.2.0`` | ``system`` -``3.2.1`` | ``system`` -``3.3.0`` | ``system`` -``3.3.1`` | ``system`` -``3.4.0`` | ``system`` -``3.4.1`` | ``system`` -``3.5.0`` | ``system`` -``3.5.1`` | ``system`` -``3.5.2`` | ``system`` -``3.5.3`` | ``system`` -``3.6.0`` | ``system`` -``3.6.1`` | ``system`` -``3.6.2`` | ``system`` -``3.7.0`` | ``system`` -``3.7.1`` | ``system`` -``3.8.0`` | ``system`` -``3.8.1`` | ``system`` -``3.9.0`` | ``system`` -``3.9.1`` | ``system`` -``3.9.2`` | ``system`` -``3.9.3`` | ``system`` -``3.9.4`` | ``system`` -``4.0.0`` | ``system`` -``4.0.1`` | ``system`` -``4.1.0`` | ``system`` +``0.5.0.0beta1`` | ``system`` +``0.5.0.0beta2`` | ``system`` ``4.1.1`` | ``system`` ``4.1.2`` | ``system`` ``4.2.0`` | ``system`` @@ -113,6 +44,7 @@ version | toolchain ``4.9.1`` | ``system`` ``4.9.2`` | ``system`` ``4.9.3`` | ``system`` +``4.9.4`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/EasyQC.md b/docs/version-specific/supported-software/e/EasyQC.md deleted file mode 100644 index f6d16c1a4b..0000000000 --- a/docs/version-specific/supported-software/e/EasyQC.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# EasyQC - -EasyQC is an R-package that provides advanced functionality to (1) perform file-level QC of single genome-wide association (GWA) data-sets (2) conduct quality control across several GWA data-sets (meta-level QC) (3) simplify data-handling of large-scale GWA data-sets. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``9.2`` | ``-R-3.3.1`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/e/EggLib.md b/docs/version-specific/supported-software/e/EggLib.md index d91c3429ea..957f1f74f6 100644 --- a/docs/version-specific/supported-software/e/EggLib.md +++ b/docs/version-specific/supported-software/e/EggLib.md @@ -6,11 +6,10 @@ search: EggLib is a C++/Python library and program package for evolutionary genetics and genomics. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.1.10`` | ``intel/2016a`` ``3.3.0`` | ``GCC/13.2.0`` diff --git a/docs/version-specific/supported-software/e/Eigen.md b/docs/version-specific/supported-software/e/Eigen.md index 24733066ef..4d1077082a 100644 --- a/docs/version-specific/supported-software/e/Eigen.md +++ b/docs/version-specific/supported-software/e/Eigen.md @@ -10,26 +10,6 @@ Eigen is a C++ template library for linear algebra: matrices, vectors, numerical version | toolchain --------|---------- -``3.2.10`` | ``intel/2016b`` -``3.2.3`` | ``foss/2016a`` -``3.2.3`` | ``foss/2016b`` -``3.2.5`` | ``system`` -``3.2.6`` | ``system`` -``3.2.7`` | ``foss/2016a`` -``3.2.7`` | ``intel/2016a`` -``3.2.8`` | ``foss/2016a`` -``3.2.8`` | ``intel/2016a`` -``3.2.8`` | ``system`` -``3.2.9`` | ``foss/2016b`` -``3.2.9`` | ``intel/2016b`` -``3.3.2`` | ``foss/2016b`` -``3.3.2`` | ``intel/2016b`` -``3.3.3`` | ``GCCcore/6.3.0`` -``3.3.3`` | ``intel/2016b`` -``3.3.4`` | ``system`` -``3.3.5`` | ``system`` -``3.3.7`` | ``GCCcore/9.3.0`` -``3.3.7`` | ``system`` ``3.3.8`` | ``GCCcore/10.2.0`` ``3.3.9`` | ``GCCcore/10.2.0`` ``3.3.9`` | ``GCCcore/10.3.0`` diff --git a/docs/version-specific/supported-software/e/Elk.md b/docs/version-specific/supported-software/e/Elk.md index f38abab39f..c94c070eb7 100644 --- a/docs/version-specific/supported-software/e/Elk.md +++ b/docs/version-specific/supported-software/e/Elk.md @@ -10,9 +10,6 @@ An all-electron full-potential linearised augmented-plane wave (FP-LAPW) code wi version | toolchain --------|---------- -``4.0.15`` | ``intel/2016b`` -``4.3.6`` | ``intel/2017a`` -``6.3.2`` | ``intel/2019b`` ``7.0.12`` | ``foss/2020b`` ``7.2.42`` | ``foss/2021a`` ``8.5.2`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/e/Elmer.md b/docs/version-specific/supported-software/e/Elmer.md index fafdc166c3..669a24b423 100644 --- a/docs/version-specific/supported-software/e/Elmer.md +++ b/docs/version-specific/supported-software/e/Elmer.md @@ -4,7 +4,7 @@ search: --- # Elmer -Elmer is an open source multiphysical simulation software mainly developed by CSC - IT Center for Science (CSC). Elmer includes physical models of fluid dynamics, structural mechanics, electromagnetics, heat transfer and acoustics, for example. These are described by partial differential equations which Elmer solves by the Finite Element Method (FEM). +Elmer is an open source multiphysical simulation software mainly developed by CSC - IT Center for Science (CSC). Elmer includes physical models of fluid dynamics, structural mechanics, electromagnetics, heat transfer and acoustics, for example. These are described by partial differential equations which Elmer solves by the Finite Element Method (FEM). *homepage*: diff --git a/docs/version-specific/supported-software/e/Emacs.md b/docs/version-specific/supported-software/e/Emacs.md index 9629f3213b..bc5e561780 100644 --- a/docs/version-specific/supported-software/e/Emacs.md +++ b/docs/version-specific/supported-software/e/Emacs.md @@ -4,26 +4,16 @@ search: --- # Emacs -GNU Emacs is an extensible, customizable text editor—and more. At its core is an interpreter for Emacs Lisp, a dialect of the Lisp programming language with extensions to support text editing. +GNU Emacs is an extensible, customizable text editor--and more. At its core is an interpreter for Emacs Lisp, a dialect of the Lisp programming language with extensions to support text editing. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``24.3`` | ``-bare`` | ``GCC/4.8.3`` -``24.3`` | | ``GCC/4.8.3`` -``24.4`` | | ``GCC/4.9.2`` -``24.5`` | | ``GCC/4.9.3-2.25`` -``25.1`` | | ``foss/2016a`` -``25.3`` | | ``GCCcore/6.3.0`` -``25.3`` | | ``GCCcore/6.4.0`` -``25.3`` | | ``GCCcore/7.3.0`` -``26.3`` | | ``GCCcore/8.3.0`` -``27.1`` | | ``GCCcore/10.2.0`` -``27.1`` | | ``GCCcore/9.3.0`` -``27.2`` | | ``GCCcore/11.2.0`` -``28.1`` | | ``GCCcore/10.2.0`` -``28.2`` | | ``GCCcore/12.2.0`` +version | toolchain +--------|---------- +``27.1`` | ``GCCcore/10.2.0`` +``27.2`` | ``GCCcore/11.2.0`` +``28.1`` | ``GCCcore/10.2.0`` +``28.2`` | ``GCCcore/12.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/Embree.md b/docs/version-specific/supported-software/e/Embree.md index bf5293d876..35f8fedf92 100644 --- a/docs/version-specific/supported-software/e/Embree.md +++ b/docs/version-specific/supported-software/e/Embree.md @@ -11,7 +11,6 @@ High Performance Ray Tracing Kernels version | toolchain --------|---------- ``3.13.4`` | ``system`` -``3.4.0`` | ``iccifort/2018.1.163-GCC-6.4.0-2.28`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/EnergyPlus.md b/docs/version-specific/supported-software/e/EnergyPlus.md index f8d221a7ea..c1008f5820 100644 --- a/docs/version-specific/supported-software/e/EnergyPlus.md +++ b/docs/version-specific/supported-software/e/EnergyPlus.md @@ -4,7 +4,7 @@ search: --- # EnergyPlus -EnergyPlus is a whole building energy simulation program that engineers, architects, and researchers use to model both energy consumption—for heating, cooling, ventilation, lighting and plug and process loads—and water use in buildings. +EnergyPlus is a whole building energy simulation program that engineers, architects, and researchers use to model both energy consumption—for heating, cooling, ventilation, lighting and plug and process loads—and water use in buildings. *homepage*: diff --git a/docs/version-specific/supported-software/e/EnsEMBLCoreAPI.md b/docs/version-specific/supported-software/e/EnsEMBLCoreAPI.md deleted file mode 100644 index ffc7884916..0000000000 --- a/docs/version-specific/supported-software/e/EnsEMBLCoreAPI.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# EnsEMBLCoreAPI - -The Ensembl Core Perl API and SQL schema - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``96.0-r20190601`` | ``-Perl-5.28.1`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/e/EricScript.md b/docs/version-specific/supported-software/e/EricScript.md deleted file mode 100644 index f2e6664995..0000000000 --- a/docs/version-specific/supported-software/e/EricScript.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# EricScript - -EricScript is a computational framework for the discovery of gene fusions in paired end RNA-seq data. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.5.5`` | ``-R-3.4.0`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/e/Essentia.md b/docs/version-specific/supported-software/e/Essentia.md deleted file mode 100644 index 432c31f594..0000000000 --- a/docs/version-specific/supported-software/e/Essentia.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Essentia - -Open-source library and tools for audio and music analysis, description and synthesis - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1_beta5`` | ``-Python-2.7.15`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/e/EveryBeam.md b/docs/version-specific/supported-software/e/EveryBeam.md index ce9594b681..e346437218 100644 --- a/docs/version-specific/supported-software/e/EveryBeam.md +++ b/docs/version-specific/supported-software/e/EveryBeam.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``0.5.2`` | ``foss/2022a`` ``0.5.2`` | ``foss/2023b`` +``0.6.1`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/EvidentialGene.md b/docs/version-specific/supported-software/e/EvidentialGene.md index f123949c7d..80125addbc 100644 --- a/docs/version-specific/supported-software/e/EvidentialGene.md +++ b/docs/version-specific/supported-software/e/EvidentialGene.md @@ -8,11 +8,11 @@ EvidentialGene is a genome informatics project for "Evidence Directed Gene Cons *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2018.01.01`` | ``-Perl-5.24.1`` | ``intel/2017a`` -``2022.01.14`` | | ``gompi/2021b`` -``2023.07.15`` | | ``gompi/2023a`` +version | toolchain +--------|---------- +``2018.01.01`` | ``gompi/2023a`` +``2022.01.14`` | ``gompi/2021b`` +``2023.07.15`` | ``gompi/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/ExaBayes.md b/docs/version-specific/supported-software/e/ExaBayes.md deleted file mode 100644 index 987a9719da..0000000000 --- a/docs/version-specific/supported-software/e/ExaBayes.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ExaBayes - -ExaBayes is a software package for Bayesian tree inference. It is particularly suitable for large-scale analyses on computer clusters - -*homepage*: - -version | toolchain ---------|---------- -``1.5`` | ``foss/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/e/ExifTool.md b/docs/version-specific/supported-software/e/ExifTool.md deleted file mode 100644 index b2e08dbfac..0000000000 --- a/docs/version-specific/supported-software/e/ExifTool.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ExifTool - -Perl module (Image::ExifTool) and program (exiftool) to read EXIF information from images - -*homepage*: - -version | toolchain ---------|---------- -``12.00`` | ``GCCcore/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/e/Exonerate.md b/docs/version-specific/supported-software/e/Exonerate.md index a4daa93eec..1a1d225b59 100644 --- a/docs/version-specific/supported-software/e/Exonerate.md +++ b/docs/version-specific/supported-software/e/Exonerate.md @@ -4,7 +4,7 @@ search: --- # Exonerate -Exonerate is a generic tool for pairwise sequence comparison. It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. +Exonerate is a generic tool for pairwise sequence comparison. It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. *homepage*: @@ -16,14 +16,6 @@ version | toolchain ``2.4.0`` | ``GCC/11.3.0`` ``2.4.0`` | ``GCC/12.2.0`` ``2.4.0`` | ``GCC/12.3.0`` -``2.4.0`` | ``GCC/6.4.0-2.28`` -``2.4.0`` | ``GCC/8.3.0`` -``2.4.0`` | ``foss/2016a`` -``2.4.0`` | ``foss/2016b`` -``2.4.0`` | ``iccifort/2017.4.196-GCC-6.4.0-2.28`` -``2.4.0`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``2.4.0`` | ``iccifort/2019.5.281`` -``2.4.0`` | ``intel/2017a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/Extrae.md b/docs/version-specific/supported-software/e/Extrae.md index 2f492127fc..df7392b90b 100644 --- a/docs/version-specific/supported-software/e/Extrae.md +++ b/docs/version-specific/supported-software/e/Extrae.md @@ -6,16 +6,15 @@ search: Extrae is the core instrumentation package developed by the Performance Tools group at BSC. Extrae is capable of instrumenting applications based on MPI, OpenMP, pthreads, CUDA1, OpenCL1, and StarSs1 using different instrumentation approaches. The information gathered by Extrae typically includes timestamped events of runtime calls, performance counters and source code references. Besides, Extrae provides its own API to allow the user to manually instrument his or her application. -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.4.1`` | ``foss/2017a`` -``3.7.1`` | ``intel/2019a`` ``3.8.0`` | ``gompi/2020b`` ``3.8.3`` | ``gompi/2021a`` ``4.0.4`` | ``gompi/2022a`` ``4.2.0`` | ``gompi/2023b`` +``4.2.5`` | ``gompi/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/e3nn.md b/docs/version-specific/supported-software/e/e3nn.md index 1bbff23213..5d74b608b1 100644 --- a/docs/version-specific/supported-software/e/e3nn.md +++ b/docs/version-specific/supported-software/e/e3nn.md @@ -4,7 +4,7 @@ search: --- # e3nn -Euclidean neural networks (e3nn) is a python library based on pytorch to create equivariant neural networks for the group O(3). +Euclidean neural networks (e3nn) is a python library based on pytorch to create equivariant neural networks for the group O(3). *homepage*: diff --git a/docs/version-specific/supported-software/e/eSpeak-NG.md b/docs/version-specific/supported-software/e/eSpeak-NG.md index 06ca1ce559..6f13d64b38 100644 --- a/docs/version-specific/supported-software/e/eSpeak-NG.md +++ b/docs/version-specific/supported-software/e/eSpeak-NG.md @@ -10,7 +10,6 @@ The eSpeak NG is a compact open source software text-to-speech synthesizer for L version | toolchain --------|---------- -``1.50`` | ``gompi/2020a`` ``1.51`` | ``gfbf/2023a`` diff --git a/docs/version-specific/supported-software/e/eXpress.md b/docs/version-specific/supported-software/e/eXpress.md deleted file mode 100644 index a704749afa..0000000000 --- a/docs/version-specific/supported-software/e/eXpress.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# eXpress - -Streaming quantification for high-throughput sequencing - -*homepage*: - -version | toolchain ---------|---------- -``1.5.1`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/e/ea-utils.md b/docs/version-specific/supported-software/e/ea-utils.md deleted file mode 100644 index 6fbe1a2143..0000000000 --- a/docs/version-specific/supported-software/e/ea-utils.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ea-utils - -Command-line tools for processing biological sequencing data. Barcode demultiplexing, adapter trimming, etc. Primarily written to support an Illumina based pipeline - but should work with any FASTQs. - -*homepage*: - -version | toolchain ---------|---------- -``1.04.807`` | ``foss/2016a`` -``1.04.807`` | ``foss/2016b`` -``1.04.807`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/e/earthengine-api.md b/docs/version-specific/supported-software/e/earthengine-api.md deleted file mode 100644 index d4ea6916b4..0000000000 --- a/docs/version-specific/supported-software/e/earthengine-api.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# earthengine-api - -Python and JavaScript bindings for calling the Earth Engine API - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1.143`` | ``-Python-2.7.14`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/e/ecCodes.md b/docs/version-specific/supported-software/e/ecCodes.md index d31c19f3da..07bbaafcc3 100644 --- a/docs/version-specific/supported-software/e/ecCodes.md +++ b/docs/version-specific/supported-software/e/ecCodes.md @@ -8,28 +8,18 @@ ecCodes is a package developed by ECMWF which provides an application programmin *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.12.5`` | | ``gompi/2019a`` -``2.15.0`` | | ``gompi/2019b`` -``2.15.0`` | | ``iimpi/2019b`` -``2.17.0`` | | ``foss/2018b`` -``2.17.0`` | | ``gompi/2019b`` -``2.18.0`` | | ``gompi/2020a`` -``2.20.0`` | | ``gompi/2020b`` -``2.22.1`` | | ``gompi/2021a`` -``2.24.2`` | | ``gompi/2021b`` -``2.24.2`` | | ``iimpi/2021b`` -``2.27.0`` | | ``gompi/2022a`` -``2.27.0`` | | ``iimpi/2022a`` -``2.31.0`` | | ``gompi/2022b`` -``2.31.0`` | | ``gompi/2023a`` -``2.31.0`` | | ``gompi/2023b`` -``2.7.3`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.7.3`` | | ``intel/2018a`` -``2.8.2`` | | ``intel/2018a`` -``2.9.2`` | | ``intel/2018b`` -``2.9.2`` | | ``iomkl/2018b`` +version | toolchain +--------|---------- +``2.20.0`` | ``gompi/2020b`` +``2.22.1`` | ``gompi/2021a`` +``2.24.2`` | ``gompi/2021b`` +``2.24.2`` | ``iimpi/2021b`` +``2.27.0`` | ``gompi/2022a`` +``2.27.0`` | ``iimpi/2022a`` +``2.31.0`` | ``gompi/2022b`` +``2.31.0`` | ``gompi/2023a`` +``2.31.0`` | ``gompi/2023b`` +``2.38.3`` | ``gompi/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/eccodes-python.md b/docs/version-specific/supported-software/e/eccodes-python.md index ae4bc0565c..3ad33c7e10 100644 --- a/docs/version-specific/supported-software/e/eccodes-python.md +++ b/docs/version-specific/supported-software/e/eccodes-python.md @@ -8,11 +8,9 @@ Python 3 interface to decode and encode GRIB and BUFR files via the ECMWF ecCode *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.0.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``1.1.0`` | | ``foss/2020b`` +version | toolchain +--------|---------- +``1.1.0`` | ``foss/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/edlib.md b/docs/version-specific/supported-software/e/edlib.md index 752e7f38e0..68c99c3e55 100644 --- a/docs/version-specific/supported-software/e/edlib.md +++ b/docs/version-specific/supported-software/e/edlib.md @@ -8,18 +8,15 @@ Lightweight, super fast library for sequence alignment using edit (Levenshtein) *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.3.8.post1`` | ``-Python-3.7.4`` | ``GCC/8.3.0`` -``1.3.8.post1`` | ``-Python-3.8.2`` | ``GCC/9.3.0`` -``1.3.8.post1`` | ``-Python-3.7.4`` | ``iccifort/2019.5.281`` -``1.3.8.post2`` | ``-Python-3.8.2`` | ``iccifort/2020.1.217`` -``1.3.9`` | | ``GCC/10.2.0`` -``1.3.9`` | | ``GCC/10.3.0`` -``1.3.9`` | | ``GCC/11.2.0`` -``1.3.9`` | | ``GCC/11.3.0`` -``1.3.9`` | | ``GCC/12.2.0`` -``1.3.9`` | | ``GCC/12.3.0`` +version | toolchain +--------|---------- +``1.3.9`` | ``GCC/10.2.0`` +``1.3.9`` | ``GCC/10.3.0`` +``1.3.9`` | ``GCC/11.2.0`` +``1.3.9`` | ``GCC/11.3.0`` +``1.3.9`` | ``GCC/12.2.0`` +``1.3.9`` | ``GCC/12.3.0`` +``1.3.9.post1`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/eggnog-mapper.md b/docs/version-specific/supported-software/e/eggnog-mapper.md index e60a2e438f..1d2fd8c948 100644 --- a/docs/version-specific/supported-software/e/eggnog-mapper.md +++ b/docs/version-specific/supported-software/e/eggnog-mapper.md @@ -4,17 +4,17 @@ search: --- # eggnog-mapper -eggnog-mapper is a tool for fast functional annotation of novel sequences (genes or proteins) using precomputed eggNOG-based orthology assignments +EggNOG-mapper is a tool for fast functional annotation of novel sequences. It uses precomputed orthologous groups and phylogenies from the eggNOG database (http://eggnog5.embl.de) to transfer functional information from fine-grained orthologs only. Common uses of eggNOG-mapper include the annotation of novel genomes, transcriptomes or even metagenomic gene catalogs. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.3`` | ``-Python-2.7.14`` | ``intel/2018a`` -``2.1.10`` | | ``foss/2020b`` -``2.1.4`` | | ``foss/2020b`` -``2.1.7`` | | ``foss/2021b`` -``2.1.9`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``2.1.10`` | ``foss/2020b`` +``2.1.12`` | ``foss/2023a`` +``2.1.4`` | ``foss/2020b`` +``2.1.7`` | ``foss/2021b`` +``2.1.9`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/einops.md b/docs/version-specific/supported-software/e/einops.md index 1372679d23..91a47fd17d 100644 --- a/docs/version-specific/supported-software/e/einops.md +++ b/docs/version-specific/supported-software/e/einops.md @@ -15,6 +15,7 @@ version | toolchain ``0.4.1`` | ``GCCcore/11.3.0`` ``0.7.0`` | ``GCCcore/12.2.0`` ``0.7.0`` | ``GCCcore/12.3.0`` +``0.8.0`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/elastix.md b/docs/version-specific/supported-software/e/elastix.md deleted file mode 100644 index d917ce8522..0000000000 --- a/docs/version-specific/supported-software/e/elastix.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# elastix - -elastix: a toolbox for rigid and nonrigid registration of images. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``4.9.0`` | | ``foss/2018a`` -``5.0.0`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/e/elfutils.md b/docs/version-specific/supported-software/e/elfutils.md index 79377681c3..f8e6c661e0 100644 --- a/docs/version-specific/supported-software/e/elfutils.md +++ b/docs/version-specific/supported-software/e/elfutils.md @@ -10,12 +10,9 @@ The elfutils project provides libraries and tools for ELF files and DWARF data. version | toolchain --------|---------- -``0.182`` | ``GCCcore/9.3.0`` ``0.183`` | ``GCCcore/10.2.0`` ``0.185`` | ``GCCcore/10.3.0`` ``0.185`` | ``GCCcore/11.2.0`` -``0.185`` | ``GCCcore/8.2.0`` -``0.185`` | ``GCCcore/8.3.0`` ``0.187`` | ``GCCcore/11.3.0`` ``0.189`` | ``GCCcore/12.2.0`` ``0.189`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/e/elfx86exts.md b/docs/version-specific/supported-software/e/elfx86exts.md new file mode 100644 index 0000000000..b41f497fed --- /dev/null +++ b/docs/version-specific/supported-software/e/elfx86exts.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# elfx86exts + +Decode binaries and print out which instruction set extensions they use. + +*homepage*: + +version | toolchain +--------|---------- +``0.6.2`` | ``GCC/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/e/emcee.md b/docs/version-specific/supported-software/e/emcee.md index 4ba69425bb..979ff7ceee 100644 --- a/docs/version-specific/supported-software/e/emcee.md +++ b/docs/version-specific/supported-software/e/emcee.md @@ -4,19 +4,14 @@ search: --- # emcee -Emcee is an extensible, pure-Python implementation of Goodman & Weare's Affine Invariant Markov chain Monte Carlo (MCMC) Ensemble sampler. It's designed for Bayesian parameter estimation and it's really sweet! +Emcee is an extensible, pure-Python implementation of Goodman & Weare's Affine Invariant Markov chain Monte Carlo (MCMC) Ensemble sampler. It's designed for Bayesian parameter estimation and it's really sweet! -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.2.1`` | ``-Python-2.7.15`` | ``foss/2018b`` -``2.2.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``2.2.1`` | | ``foss/2019a`` -``2.2.1`` | ``-Python-2.7.15`` | ``intel/2018b`` -``2.2.1`` | ``-Python-3.6.6`` | ``intel/2018b`` -``3.1.4`` | | ``foss/2021b`` -``3.1.4`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``3.1.4`` | ``foss/2021b`` +``3.1.4`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/enaBrowserTool.md b/docs/version-specific/supported-software/e/enaBrowserTool.md index 6469361ea2..7b1546c98a 100644 --- a/docs/version-specific/supported-software/e/enaBrowserTool.md +++ b/docs/version-specific/supported-software/e/enaBrowserTool.md @@ -4,14 +4,13 @@ search: --- # enaBrowserTool -enaBrowserTools is a set of scripts that interface with the ENA web services to download data from ENA easily, without any knowledge of scripting required. +enaBrowserTools is a set of scripts that interface with the ENA web services to download data from ENA easily, without any knowledge of scripting required. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.5.4`` | ``-Python-3.7.2`` | ``GCCcore/8.2.0`` -``1.6`` | | ``GCCcore/10.3.0`` +version | toolchain +--------|---------- +``1.6`` | ``GCCcore/10.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/enchant.md b/docs/version-specific/supported-software/e/enchant.md deleted file mode 100644 index 94865d15c2..0000000000 --- a/docs/version-specific/supported-software/e/enchant.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# enchant - -Enchant is a library (and command-line program) that wraps a number of different spelling libraries and programs with a consistent interface. - -*homepage*: - -version | toolchain ---------|---------- -``1.6.1`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/e/entrypoints.md b/docs/version-specific/supported-software/e/entrypoints.md deleted file mode 100644 index ff7db31822..0000000000 --- a/docs/version-specific/supported-software/e/entrypoints.md +++ /dev/null @@ -1,21 +0,0 @@ ---- -search: - boost: 0.5 ---- -# entrypoints - -Entry points are a way for Python packages to advertise objects with some common interface. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.2.2`` | ``-Python-2.7.11`` | ``foss/2016a`` -``0.2.2`` | ``-Python-3.5.1`` | ``foss/2016a`` -``0.2.2`` | ``-Python-2.7.12`` | ``foss/2016b`` -``0.2.2`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.2.2`` | ``-Python-3.5.2`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/e/eudev.md b/docs/version-specific/supported-software/e/eudev.md deleted file mode 100644 index 7df1c9e7ca..0000000000 --- a/docs/version-specific/supported-software/e/eudev.md +++ /dev/null @@ -1,21 +0,0 @@ ---- -search: - boost: 0.5 ---- -# eudev - -eudev is a fork of systemd-udev with the goal of obtaining better compatibility with existing software such as OpenRC and Upstart, older kernels, various toolchains and anything else required by users and various distributions. - -*homepage*: - -version | toolchain ---------|---------- -``3.1.5`` | ``foss/2016a`` -``3.1.5`` | ``gimkl/2.11.5`` -``3.1.5`` | ``intel/2016a`` -``3.2`` | ``GCCcore/4.9.3`` -``3.2.2`` | ``GCCcore/6.4.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/e/evmix.md b/docs/version-specific/supported-software/e/evmix.md deleted file mode 100644 index 5815d4dd5c..0000000000 --- a/docs/version-specific/supported-software/e/evmix.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# evmix - -evmix: Extreme Value Mixture Modelling, Threshold Estimation and Boundary Corrected Kernel Density Estimation - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.6`` | ``-R-3.3.1`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/e/exiv2.md b/docs/version-specific/supported-software/e/exiv2.md index 3a3418cbe7..407ad2d1c3 100644 --- a/docs/version-specific/supported-software/e/exiv2.md +++ b/docs/version-specific/supported-software/e/exiv2.md @@ -13,6 +13,7 @@ version | toolchain ``0.27.4`` | ``GCCcore/10.3.0`` ``0.27.5`` | ``GCCcore/11.2.0`` ``0.28.0`` | ``GCCcore/12.3.0`` +``0.28.3`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/expat.md b/docs/version-specific/supported-software/e/expat.md index 1914892a6f..4a723ab77d 100644 --- a/docs/version-specific/supported-software/e/expat.md +++ b/docs/version-specific/supported-software/e/expat.md @@ -4,32 +4,14 @@ search: --- # expat -Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags) +Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags) *homepage*: version | toolchain --------|---------- -``2.1.0`` | ``GCC/4.9.2`` -``2.1.0`` | ``foss/2016a`` -``2.1.0`` | ``intel/2016a`` -``2.1.1`` | ``foss/2016a`` -``2.1.1`` | ``intel/2016a`` -``2.2.0`` | ``GCCcore/4.9.3`` -``2.2.0`` | ``GCCcore/5.4.0`` -``2.2.0`` | ``GCCcore/6.3.0`` -``2.2.0`` | ``foss/2016a`` -``2.2.0`` | ``foss/2016b`` -``2.2.0`` | ``gimkl/2017a`` -``2.2.0`` | ``intel/2016b`` -``2.2.4`` | ``GCCcore/6.4.0`` -``2.2.5`` | ``GCCcore/6.4.0`` -``2.2.5`` | ``GCCcore/7.3.0`` -``2.2.6`` | ``GCCcore/8.2.0`` -``2.2.7`` | ``GCCcore/8.3.0`` ``2.2.9`` | ``GCCcore/10.2.0`` ``2.2.9`` | ``GCCcore/10.3.0`` -``2.2.9`` | ``GCCcore/9.3.0`` ``2.4.1`` | ``GCCcore/11.2.0`` ``2.4.8`` | ``GCCcore/11.3.0`` ``2.4.8`` | ``GCCcore/12.1.0`` @@ -37,6 +19,7 @@ version | toolchain ``2.5.0`` | ``GCCcore/12.3.0`` ``2.5.0`` | ``GCCcore/13.2.0`` ``2.6.2`` | ``GCCcore/13.3.0`` +``2.6.4`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/expect.md b/docs/version-specific/supported-software/e/expect.md deleted file mode 100644 index 5a8d26cf69..0000000000 --- a/docs/version-specific/supported-software/e/expect.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# expect - -Expect is a tool for automating interactive applications such as telnet, ftp, passwd, fsck, rlogin, tip, etc. Expect really makes this stuff trivial. Expect is also useful for testing these same applications. - -*homepage*: - -version | toolchain ---------|---------- -``5.45.4`` | ``GCCcore/7.3.0`` -``5.45.4`` | ``GCCcore/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/e/index.md b/docs/version-specific/supported-software/e/index.md index 28f225acee..0000947df7 100644 --- a/docs/version-specific/supported-software/e/index.md +++ b/docs/version-specific/supported-software/e/index.md @@ -10,12 +10,9 @@ search: * [E-ANTIC](E-ANTIC.md) * [e3nn](e3nn.md) - * [ea-utils](ea-utils.md) - * [earthengine-api](earthengine-api.md) * [easel](easel.md) * [EasyBuild](EasyBuild.md) * [EasyMocap](EasyMocap.md) - * [EasyQC](EasyQC.md) * [ebGSEA](ebGSEA.md) * [ecBuild](ecBuild.md) * [ecCodes](ecCodes.md) @@ -23,7 +20,6 @@ search: * [ecFlow](ecFlow.md) * [ECL](ECL.md) * [eclib](eclib.md) - * [ED2](ED2.md) * [EDirect](EDirect.md) * [edlib](edlib.md) * [EGA-QuickView](EGA-QuickView.md) @@ -35,70 +31,53 @@ search: * [EigenExa](EigenExa.md) * [EIGENSOFT](EIGENSOFT.md) * [einops](einops.md) - * [elastix](elastix.md) * [elbencho](elbencho.md) * [ELFIO](ELFIO.md) * [elfutils](elfutils.md) + * [elfx86exts](elfx86exts.md) * [Elk](Elk.md) * [Elmer](Elmer.md) * [ELPA](ELPA.md) - * [ELPH](ELPH.md) * [elprep](elprep.md) * [ELSI](ELSI.md) * [ELSI-RCI](ELSI-RCI.md) * [Emacs](Emacs.md) - * [EMAN2](EMAN2.md) * [EMBOSS](EMBOSS.md) * [Embree](Embree.md) * [emcee](emcee.md) * [EMMAX](EMMAX.md) * [empanada-dl](empanada-dl.md) * [empanada-napari](empanada-napari.md) - * [EMU](EMU.md) * [enaBrowserTool](enaBrowserTool.md) - * [enchant](enchant.md) * [enchant-2](enchant-2.md) * [EnergyPlus](EnergyPlus.md) - * [EnsEMBLCoreAPI](EnsEMBLCoreAPI.md) * [ensmallen](ensmallen.md) - * [entrypoints](entrypoints.md) * [epct](epct.md) - * [EPD](EPD.md) - * [EPIC](EPIC.md) * [epiScanpy](epiScanpy.md) * [EpiSCORE](EpiSCORE.md) * [eQuilibrator](eQuilibrator.md) - * [EricScript](EricScript.md) * [ESIpy](ESIpy.md) * [ESL-Bundle](ESL-Bundle.md) * [ESM-2](ESM-2.md) * [ESM3](ESM3.md) * [ESMF](ESMF.md) * [ESMPy](ESMPy.md) - * [ESMValTool](ESMValTool.md) * [eSpeak-NG](eSpeak-NG.md) * [ESPResSo](ESPResSo.md) - * [Essentia](Essentia.md) * [ETE](ETE.md) - * [ETSF_IO](ETSF_IO.md) - * [eudev](eudev.md) * [EUKulele](EUKulele.md) * [EVcouplings](EVcouplings.md) * [Evcxr-REPL](Evcxr-REPL.md) * [EveryBeam](EveryBeam.md) + * [EVidenceModeler](EVidenceModeler.md) * [EvidentialGene](EvidentialGene.md) * [evince](evince.md) - * [evmix](evmix.md) - * [ExaBayes](ExaBayes.md) * [ExaML](ExaML.md) * [Excel-Writer-XLSX](Excel-Writer-XLSX.md) - * [ExifTool](ExifTool.md) * [exiv2](exiv2.md) * [Exonerate](Exonerate.md) * [expat](expat.md) - * [expect](expect.md) * [expecttest](expecttest.md) - * [eXpress](eXpress.md) * [ExpressBetaDiversity](ExpressBetaDiversity.md) * [Extrae](Extrae.md) * [ExtremeLy](ExtremeLy.md) diff --git a/docs/version-specific/supported-software/f/FALCON.md b/docs/version-specific/supported-software/f/FALCON.md deleted file mode 100644 index 6fa1c26ff7..0000000000 --- a/docs/version-specific/supported-software/f/FALCON.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FALCON - -Falcon: a set of tools for fast aligning long reads for consensus and assembly - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.8.8`` | | ``intel/2017b`` -``1.8.8`` | ``-Python-2.7.16`` | ``intel/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FANN.md b/docs/version-specific/supported-software/f/FANN.md deleted file mode 100644 index e17e0b7cfc..0000000000 --- a/docs/version-specific/supported-software/f/FANN.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FANN - -Fast Artificial Neural Network Library is a free open source neural network library, which implements multilayer artificial neural networks in C with support for both fully connected and sparsely connected networks. - -*homepage*: - -version | toolchain ---------|---------- -``2.2.0`` | ``GCCcore/6.4.0`` -``2.2.0`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FASTA.md b/docs/version-specific/supported-software/f/FASTA.md index a2406f68ac..8ee427e113 100644 --- a/docs/version-specific/supported-software/f/FASTA.md +++ b/docs/version-specific/supported-software/f/FASTA.md @@ -4,15 +4,15 @@ search: --- # FASTA -The FASTA programs find regions of local or global (new) similarity between protein or DNA sequences, either by searching Protein or DNA databases, or by identifying local duplications within a sequence. +The FASTA programs find regions of local or global (new) similarity between protein or DNA sequences, either by searching Protein or DNA databases, or by identifying local duplications within a sequence. *homepage*: version | toolchain --------|---------- -``36.3.5e`` | ``foss/2016b`` ``36.3.8i`` | ``GCC/11.2.0`` ``36.3.8i`` | ``GCC/12.2.0`` +``36.3.8i`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FASTX-Toolkit.md b/docs/version-specific/supported-software/f/FASTX-Toolkit.md index a70eb91564..33eb8add61 100644 --- a/docs/version-specific/supported-software/f/FASTX-Toolkit.md +++ b/docs/version-specific/supported-software/f/FASTX-Toolkit.md @@ -4,7 +4,7 @@ search: --- # FASTX-Toolkit -The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing. +The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing. *homepage*: @@ -13,11 +13,6 @@ version | toolchain ``0.0.14`` | ``GCC/10.3.0`` ``0.0.14`` | ``GCC/11.2.0`` ``0.0.14`` | ``GCC/11.3.0`` -``0.0.14`` | ``GCC/9.3.0`` -``0.0.14`` | ``GCCcore/7.3.0`` -``0.0.14`` | ``foss/2016a`` -``0.0.14`` | ``foss/2016b`` -``0.0.14`` | ``intel/2018a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FCM.md b/docs/version-specific/supported-software/f/FCM.md deleted file mode 100644 index 9891554eb8..0000000000 --- a/docs/version-specific/supported-software/f/FCM.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FCM - -FCM is a set of tools for managing and building source code. - -*homepage*: - -version | toolchain ---------|---------- -``2.3.1`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FDS.md b/docs/version-specific/supported-software/f/FDS.md index 27e5dab3be..0f7c0fe07a 100644 --- a/docs/version-specific/supported-software/f/FDS.md +++ b/docs/version-specific/supported-software/f/FDS.md @@ -4,24 +4,20 @@ search: --- # FDS -Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, with an emphasis on smoke and heat transport from fires. +Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, with an emphasis on smoke and heat transport from fires. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``6.0.1`` | ``-no-OFED`` | ``system`` -``6.5.2`` | | ``intel/2016b`` -``6.5.3`` | | ``intel/2017a`` -``6.6.0`` | | ``intel/2017b`` -``6.6.0`` | | ``intel/2018a`` -``6.7.0`` | | ``intel/2018a`` -``6.7.4`` | | ``intel/2020a`` -``6.7.5`` | | ``intel/2020a`` -``6.7.6`` | | ``intel/2020b`` -``6.7.7`` | | ``intel/2021b`` -``6.7.9`` | | ``intel/2022a`` -``6.8.0`` | | ``intel/2022b`` +version | toolchain +--------|---------- +``6.7.6`` | ``intel/2020b`` +``6.7.7`` | ``intel/2021b`` +``6.7.9`` | ``intel/2022a`` +``6.8.0`` | ``intel/2022b`` +``6.8.0`` | ``iomkl/2022b`` +``6.9.1`` | ``foss/2023b`` +``6.9.1`` | ``intel/2023a`` +``6.9.1`` | ``iomkl/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FDTD_Solutions.md b/docs/version-specific/supported-software/f/FDTD_Solutions.md deleted file mode 100644 index daaa76a4bf..0000000000 --- a/docs/version-specific/supported-software/f/FDTD_Solutions.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FDTD_Solutions - -High performance FDTD-method Maxwell solver for the design, analysis and optimization of nanophotonic devices, processes and materials. - -*homepage*: - -version | toolchain ---------|---------- -``8.11.337`` | ``system`` -``8.16.982`` | ``system`` -``8.20.1731`` | ``system`` -``8.6.2`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FEniCS.md b/docs/version-specific/supported-software/f/FEniCS.md deleted file mode 100644 index f5fe8440a6..0000000000 --- a/docs/version-specific/supported-software/f/FEniCS.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FEniCS - -FEniCS is a computing platform for solving partial differential equations (PDEs). - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2019.1.0`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FFAVES.md b/docs/version-specific/supported-software/f/FFAVES.md index 51e25b26bb..59acbe385b 100644 --- a/docs/version-specific/supported-software/f/FFAVES.md +++ b/docs/version-specific/supported-software/f/FFAVES.md @@ -4,7 +4,7 @@ search: --- # FFAVES -Functional Feature Amplification Via Entropy Sorting (FFAVES). Use FFAVES to amplify the signal of groups of co-regulating genes in an unsupervised, multivariate manner. By amplifying the signal of genes with correlated expression, while filtering out genes that are randomly expressed, we can identify a subset of genes more predictive of different cell types. The output of FFAVES can then be used in our second algorithm, entropy sort feature weighting (ESFW), to create a ranked list of genes that are most likely to pertain to distinct sub-populations of cells in an scRNA-seq dataset. +Functional Feature Amplification Via Entropy Sorting (FFAVES). Use FFAVES to amplify the signal of groups of co-regulating genes in an unsupervised, multivariate manner. By amplifying the signal of genes with correlated expression, while filtering out genes that are randomly expressed, we can identify a subset of genes more predictive of different cell types. The output of FFAVES can then be used in our second algorithm, entropy sort feature weighting (ESFW), to create a ranked list of genes that are most likely to pertain to distinct sub-populations of cells in an scRNA-seq dataset. *homepage*: diff --git a/docs/version-specific/supported-software/f/FFC.md b/docs/version-specific/supported-software/f/FFC.md deleted file mode 100644 index 60cf4e91d2..0000000000 --- a/docs/version-specific/supported-software/f/FFC.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FFC - -The FEniCS Form Compiler (FFC) is a compiler for finite element variational forms. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2018.1.0`` | ``-Python-3.6.4`` | ``foss/2018a`` -``2019.1.0.post0`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FFLAS-FFPACK.md b/docs/version-specific/supported-software/f/FFLAS-FFPACK.md index c4f6afafc8..d42ad52c8a 100644 --- a/docs/version-specific/supported-software/f/FFLAS-FFPACK.md +++ b/docs/version-specific/supported-software/f/FFLAS-FFPACK.md @@ -10,7 +10,6 @@ Finite Field Linear Algebra Subroutines / Package version | toolchain --------|---------- -``2.2.0`` | ``foss/2016a`` ``2.5.0`` | ``gfbf/2022a`` ``2.5.0`` | ``gfbf/2023b`` diff --git a/docs/version-specific/supported-software/f/FFTW.MPI.md b/docs/version-specific/supported-software/f/FFTW.MPI.md index fc2330ce2e..3b84861be5 100644 --- a/docs/version-specific/supported-software/f/FFTW.MPI.md +++ b/docs/version-specific/supported-software/f/FFTW.MPI.md @@ -20,6 +20,7 @@ version | toolchain ``3.3.10`` | ``gompi/2023b`` ``3.3.10`` | ``gompi/2024.05`` ``3.3.10`` | ``gompi/2024a`` +``3.3.10`` | ``iimpi/2023a`` ``3.3.10`` | ``nvompi/2022.07`` diff --git a/docs/version-specific/supported-software/f/FFTW.md b/docs/version-specific/supported-software/f/FFTW.md index 3c59062472..f59f6802bd 100644 --- a/docs/version-specific/supported-software/f/FFTW.md +++ b/docs/version-specific/supported-software/f/FFTW.md @@ -4,83 +4,31 @@ search: --- # FFTW -FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data. +FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1.5`` | | ``intel/2016b`` -``2.1.5`` | | ``intel/2017a`` -``2.1.5`` | | ``intel/2018b`` -``3.3.10`` | | ``GCC/11.3.0`` -``3.3.10`` | | ``GCC/12.2.0`` -``3.3.10`` | | ``GCC/12.3.0`` -``3.3.10`` | | ``GCC/13.2.0`` -``3.3.10`` | | ``GCC/13.3.0`` -``3.3.10`` | | ``NVHPC/22.7-CUDA-11.7.0`` -``3.3.10`` | | ``gompi/2021b`` -``3.3.10`` | | ``iimpi/2021b`` -``3.3.10`` | | ``iimpi/2022a`` -``3.3.10`` | | ``iimpi/2022b`` -``3.3.4`` | | ``gmpich/2016a`` -``3.3.4`` | | ``gmvapich2/1.7.20`` -``3.3.4`` | | ``gmvapich2/2016a`` -``3.3.4`` | | ``gompi/2016.04`` -``3.3.4`` | | ``gompi/2016.06`` -``3.3.4`` | | ``gompi/2016.07`` -``3.3.4`` | | ``gompi/2016a`` -``3.3.4`` | | ``gompi/2016b`` -``3.3.4`` | | ``intel/2016a`` -``3.3.4`` | | ``intel/2016b`` -``3.3.5`` | | ``gompi/2016.07`` -``3.3.5`` | | ``gompi/2016.09`` -``3.3.5`` | | ``gompi/2016b`` -``3.3.5`` | | ``intel/2016b`` -``3.3.6`` | | ``gimpi/2017b`` -``3.3.6`` | | ``gimpic/2017b`` -``3.3.6`` | | ``gompi/2017a`` -``3.3.6`` | | ``gompi/2017b`` -``3.3.6`` | | ``gompic/2017b`` -``3.3.6`` | | ``intel/2016b`` -``3.3.6`` | | ``intel/2017a`` -``3.3.6`` | | ``intel/2017b`` -``3.3.6`` | | ``intelcuda/2017b`` -``3.3.7`` | ``-serial`` | ``GCC/6.4.0-2.28`` -``3.3.7`` | | ``gimkl/2017a`` -``3.3.7`` | | ``gimpi/2018a`` -``3.3.7`` | | ``gmpich/2017.08`` -``3.3.7`` | | ``gompi/2018a`` -``3.3.7`` | | ``gompic/2018a`` -``3.3.7`` | | ``intel/2017b`` -``3.3.7`` | | ``intel/2018.00`` -``3.3.7`` | | ``intel/2018.01`` -``3.3.7`` | | ``intel/2018a`` -``3.3.7`` | | ``iomkl/2018a`` -``3.3.8`` | ``-serial`` | ``GCC/9.3.0`` -``3.3.8`` | | ``gompi/2018.08`` -``3.3.8`` | | ``gompi/2018b`` -``3.3.8`` | | ``gompi/2019a`` -``3.3.8`` | | ``gompi/2019b`` -``3.3.8`` | ``-amd`` | ``gompi/2020a`` -``3.3.8`` | | ``gompi/2020a`` -``3.3.8`` | | ``gompi/2020b`` -``3.3.8`` | | ``gompic/2018b`` -``3.3.8`` | | ``gompic/2019a`` -``3.3.8`` | | ``gompic/2019b`` -``3.3.8`` | | ``gompic/2020a`` -``3.3.8`` | | ``gompic/2020b`` -``3.3.8`` | | ``iimpi/2020b`` -``3.3.8`` | | ``intel/2018b`` -``3.3.8`` | | ``intel/2019a`` -``3.3.8`` | | ``intel/2019b`` -``3.3.8`` | | ``intel/2020a`` -``3.3.8`` | | ``intel/2020b`` -``3.3.8`` | | ``iomkl/2018b`` -``3.3.8`` | | ``iomkl/2020b`` -``3.3.8`` | | ``iompi/2020b`` -``3.3.9`` | | ``gompi/2021a`` -``3.3.9`` | | ``intel/2021a`` +version | toolchain +--------|---------- +``3.3.10`` | ``GCC/11.3.0`` +``3.3.10`` | ``GCC/12.2.0`` +``3.3.10`` | ``GCC/12.3.0`` +``3.3.10`` | ``GCC/13.2.0`` +``3.3.10`` | ``GCC/13.3.0`` +``3.3.10`` | ``NVHPC/22.7-CUDA-11.7.0`` +``3.3.10`` | ``gompi/2021b`` +``3.3.10`` | ``iimpi/2021b`` +``3.3.10`` | ``iimpi/2022a`` +``3.3.10`` | ``iimpi/2022b`` +``3.3.10`` | ``intel-compilers/2023.1.0`` +``3.3.8`` | ``gompi/2020b`` +``3.3.8`` | ``gompic/2020b`` +``3.3.8`` | ``iimpi/2020b`` +``3.3.8`` | ``intel/2020b`` +``3.3.8`` | ``iomkl/2020b`` +``3.3.8`` | ``iompi/2020b`` +``3.3.9`` | ``gompi/2021a`` +``3.3.9`` | ``intel/2021a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FFmpeg.md b/docs/version-specific/supported-software/f/FFmpeg.md index 3cba9d755c..f0d0c5b09e 100644 --- a/docs/version-specific/supported-software/f/FFmpeg.md +++ b/docs/version-specific/supported-software/f/FFmpeg.md @@ -10,33 +10,6 @@ A complete, cross-platform solution to record, convert and stream audio and vide version | toolchain --------|---------- -``0.10.16`` | ``gimkl/2.11.5`` -``0.10.16`` | ``intel/2016a`` -``2.8.6`` | ``intel/2016a`` -``2.8.7`` | ``foss/2016a`` -``2.8.7`` | ``intel/2016a`` -``3.0.2`` | ``foss/2016a`` -``3.0.2`` | ``intel/2016a`` -``3.1.3`` | ``foss/2016b`` -``3.1.3`` | ``intel/2016b`` -``3.2.4`` | ``gimkl/2017a`` -``3.3.1`` | ``foss/2016b`` -``3.3.4`` | ``intel/2017a`` -``3.4`` | ``GCCcore/6.4.0`` -``3.4.1`` | ``foss/2017b`` -``3.4.1`` | ``intel/2017b`` -``3.4.2`` | ``foss/2018a`` -``3.4.2`` | ``intel/2018a`` -``3.4.5`` | ``foss/2018b`` -``4.0`` | ``foss/2018a`` -``4.0`` | ``intel/2018a`` -``4.0.1`` | ``intel/2018a`` -``4.1`` | ``foss/2018b`` -``4.1`` | ``fosscuda/2018b`` -``4.1`` | ``intel/2018b`` -``4.1.3`` | ``GCCcore/8.2.0`` -``4.2.1`` | ``GCCcore/8.3.0`` -``4.2.2`` | ``GCCcore/9.3.0`` ``4.3.1`` | ``GCCcore/10.2.0`` ``4.3.2`` | ``GCCcore/10.3.0`` ``4.3.2`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/f/FGSL.md b/docs/version-specific/supported-software/f/FGSL.md deleted file mode 100644 index d412ac1754..0000000000 --- a/docs/version-specific/supported-software/f/FGSL.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FGSL - -FGSL: A Fortran interface to the GNU Scientific Library - -*homepage*: - -version | toolchain ---------|---------- -``1.1.0`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FHI-aims.md b/docs/version-specific/supported-software/f/FHI-aims.md index 4900382840..d6e039cc5d 100644 --- a/docs/version-specific/supported-software/f/FHI-aims.md +++ b/docs/version-specific/supported-software/f/FHI-aims.md @@ -6,11 +6,10 @@ search: FHI-aims is an efficient, accurate all-electron, full-potential electronic structure code package for computational molecular and materials science (non-periodic and periodic systems). The code supports DFT (semilocal and hybrid) and many-body perturbation theory. FHI-aims is particularly efficient for molecular systems and nanostructures, while maintaining high numerical accuracy for all production tasks. Production calculations handle up to several thousand atoms and can efficiently use (ten) thousands of cores. -*homepage*: +*homepage*: version | toolchain --------|---------- -``200112_2`` | ``intel/2019b`` ``221103`` | ``intel/2022a`` diff --git a/docs/version-specific/supported-software/f/FIAT.md b/docs/version-specific/supported-software/f/FIAT.md deleted file mode 100644 index 3cd11c19a6..0000000000 --- a/docs/version-specific/supported-software/f/FIAT.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FIAT - -The FInite element Automatic Tabulator FIAT supports generation of arbitrary order instances of the Lagrange elements on lines, triangles, and tetrahedra. It is also capable of generating arbitrary order instances of Jacobi-type quadrature rules on the same element shapes. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.6.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``1.6.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``2018.1.0`` | ``-Python-3.6.4`` | ``foss/2018a`` -``2019.1.0`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FIRESTARTER.md b/docs/version-specific/supported-software/f/FIRESTARTER.md index dab1c4b05d..1365848654 100644 --- a/docs/version-specific/supported-software/f/FIRESTARTER.md +++ b/docs/version-specific/supported-software/f/FIRESTARTER.md @@ -10,7 +10,6 @@ FIRESTARTER: A Processor Stress Test Utility. FIRESTARTER maximizes the energy c version | toolchain --------|---------- -``2.0`` | ``gcccuda/2020a`` ``2.0`` | ``gcccuda/2020b`` diff --git a/docs/version-specific/supported-software/f/FIt-SNE.md b/docs/version-specific/supported-software/f/FIt-SNE.md deleted file mode 100644 index 6a7fcaa904..0000000000 --- a/docs/version-specific/supported-software/f/FIt-SNE.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FIt-SNE - -t-distributed stochastic neighbor embedding (t-SNE) is widely used for visualizing single-cell RNA-sequencing (scRNA-seq) data, but it scales poorly to large datasets. We dramatically accelerate t-SNE, obviating the need for data downsampling, and hence allowing visualization of rare cell populations. Furthermore, we implement a heatmap-style visualization for scRNA-seq based on one-dimensional t-SNE for simultaneously visualizing the expression patterns of thousands of genes. - -*homepage*: - -version | toolchain ---------|---------- -``1.1.0`` | ``gompi/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FLAIR.md b/docs/version-specific/supported-software/f/FLAIR.md deleted file mode 100644 index 97826d5119..0000000000 --- a/docs/version-specific/supported-software/f/FLAIR.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FLAIR - -FLAIR (Full-Length Alternative Isoform analysis of RNA) for the correction, isoform definition, and alternative splicing analysis of noisy reads. FLAIR has primarily been used for nanopore cDNA, native RNA, and PacBio sequencing reads. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.5`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.5.1-20200630`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FLANN.md b/docs/version-specific/supported-software/f/FLANN.md index 5008b5142c..367330da2b 100644 --- a/docs/version-specific/supported-software/f/FLANN.md +++ b/docs/version-specific/supported-software/f/FLANN.md @@ -8,12 +8,10 @@ FLANN is a library for performing fast approximate nearest neighbor searches in *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.8.4`` | ``-Python-3.8.2`` | ``foss/2020a`` -``1.8.4`` | ``-Python-2.7.11`` | ``intel/2016a`` -``1.8.4`` | ``-Python-2.7.14`` | ``intel/2017b`` -``1.9.1`` | ``-Python-3.8.2`` | ``foss/2020a`` +version | toolchain +--------|---------- +``1.9.2`` | ``foss/2022b`` +``1.9.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FLASH.md b/docs/version-specific/supported-software/f/FLASH.md index 224477a1c6..66cf6715d6 100644 --- a/docs/version-specific/supported-software/f/FLASH.md +++ b/docs/version-specific/supported-software/f/FLASH.md @@ -4,19 +4,15 @@ search: --- # FLASH -FLASH (Fast Length Adjustment of SHort reads) is a very fast and accurate software tool to merge paired-end reads from next-generation sequencing experiments. FLASH is designed to merge pairs of reads when the original DNA fragments are shorter than twice the length of reads. The resulting longer reads can significantly improve genome assemblies. They can also improve transcriptome assembly when FLASH is used to merge RNA-seq data. +FLASH (Fast Length Adjustment of SHort reads) is a very fast and accurate software tool to merge paired-end reads from next-generation sequencing experiments. FLASH is designed to merge pairs of reads when the original DNA fragments are shorter than twice the length of reads. The resulting longer reads can significantly improve genome assemblies. They can also improve transcriptome assembly when FLASH is used to merge RNA-seq data. *homepage*: version | toolchain --------|---------- -``1.2.11`` | ``GCC/8.3.0`` -``1.2.11`` | ``foss/2016a`` -``1.2.11`` | ``foss/2018a`` -``1.2.11`` | ``foss/2018b`` ``2.2.00`` | ``GCC/11.2.0`` ``2.2.00`` | ``GCCcore/12.2.0`` -``2.2.00`` | ``foss/2018b`` +``2.2.00`` | ``GCCcore/13.3.0`` ``2.2.00`` | ``foss/2020b`` diff --git a/docs/version-specific/supported-software/f/FLEUR.md b/docs/version-specific/supported-software/f/FLEUR.md deleted file mode 100644 index 20bf606db7..0000000000 --- a/docs/version-specific/supported-software/f/FLEUR.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FLEUR - -FLEUR is a feature-full, freely available FLAPW (full potential linearized augmented planewave) code, based on density-functional theory. - -*homepage*: - -version | toolchain ---------|---------- -``0.26e`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FLINT.md b/docs/version-specific/supported-software/f/FLINT.md index e5417b4abe..8c1f3cd5a0 100644 --- a/docs/version-specific/supported-software/f/FLINT.md +++ b/docs/version-specific/supported-software/f/FLINT.md @@ -6,19 +6,16 @@ search: FLINT (Fast Library for Number Theory) is a C library in support of computations in number theory. Operations that can be performed include conversions, arithmetic, computing GCDs, factoring, solving linear systems, and evaluating special functions. In addition, FLINT provides various low-level routines for fast arithmetic. FLINT is extensively documented and tested. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.5.2`` | ``GCC/7.3.0-2.30`` -``2.5.2`` | ``GCC/8.2.0-2.31.1`` -``2.5.2`` | ``GCC/8.3.0`` -``2.5.2`` | ``iccifort/2018.3.222-GCC-7.3.0-2.30`` ``2.7.1`` | ``GCC/10.3.0`` ``2.8.4`` | ``foss/2021b`` ``2.9.0`` | ``gfbf/2022a`` ``2.9.0`` | ``gfbf/2022b`` ``3.1.1`` | ``gfbf/2023b`` +``3.1.2`` | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FLTK.md b/docs/version-specific/supported-software/f/FLTK.md index b6a2a9fa17..fa328c5b1f 100644 --- a/docs/version-specific/supported-software/f/FLTK.md +++ b/docs/version-specific/supported-software/f/FLTK.md @@ -6,29 +6,11 @@ search: FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.3.3`` | ``foss/2016a`` -``1.3.3`` | ``foss/2016b`` -``1.3.3`` | ``intel/2016a`` -``1.3.3`` | ``intel/2016b`` -``1.3.4`` | ``foss/2017b`` -``1.3.4`` | ``foss/2018a`` -``1.3.4`` | ``foss/2018b`` -``1.3.4`` | ``fosscuda/2017b`` -``1.3.4`` | ``fosscuda/2018a`` -``1.3.4`` | ``fosscuda/2018b`` -``1.3.4`` | ``intel/2017a`` -``1.3.4`` | ``intel/2017b`` -``1.3.4`` | ``intel/2018a`` -``1.3.4`` | ``intel/2018b`` -``1.3.4`` | ``intelcuda/2017b`` -``1.3.5`` | ``GCC/8.2.0-2.31.1`` -``1.3.5`` | ``GCC/8.3.0`` ``1.3.5`` | ``GCCcore/10.2.0`` -``1.3.5`` | ``GCCcore/9.3.0`` ``1.3.6`` | ``GCCcore/10.3.0`` ``1.3.7`` | ``GCCcore/11.2.0`` ``1.3.8`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/f/FLUENT.md b/docs/version-specific/supported-software/f/FLUENT.md index ffa288702c..bab5158f85 100644 --- a/docs/version-specific/supported-software/f/FLUENT.md +++ b/docs/version-specific/supported-software/f/FLUENT.md @@ -4,19 +4,12 @@ search: --- # FLUENT -ANSYS FLUENT software contains the broad physical modeling capabilities needed to model flow, turbulence, heat transfer, and reactions for industrial applications ranging from air flow over an aircraft wing to combustion in a furnace, from bubble columns to oil platforms, from blood flow to semiconductor manufacturing, and from clean room design to wastewater treatment plants. +ANSYS FLUENT software contains the broad physical modeling capabilities needed to model flow, turbulence, heat transfer, and reactions for industrial applications ranging from air flow over an aircraft wing to combustion in a furnace, from bubble columns to oil platforms, from blood flow to semiconductor manufacturing, and from clean room design to wastewater treatment plants. -*homepage*: +*homepage*: version | toolchain --------|---------- -``14.5`` | ``system`` -``15.0.7`` | ``system`` -``16.0`` | ``system`` -``17.1`` | ``system`` -``18.0`` | ``system`` -``18.1`` | ``system`` -``18.2`` | ``system`` ``2019R3`` | ``system`` ``2021R1`` | ``system`` ``2021R2`` | ``system`` diff --git a/docs/version-specific/supported-software/f/FMILibrary.md b/docs/version-specific/supported-software/f/FMILibrary.md deleted file mode 100644 index 7bc8c115d5..0000000000 --- a/docs/version-specific/supported-software/f/FMILibrary.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FMILibrary - -FMI library is intended as a foundation for applications interfacing FMUs (Functional Mockup Units) that follow FMI Standard. This version of the library supports FMI 1.0 and FMI2.0. See http://www.fmi-standard.org/ - -*homepage*: - -version | toolchain ---------|---------- -``2.0.3`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FMRIprep.md b/docs/version-specific/supported-software/f/FMRIprep.md deleted file mode 100644 index 6a8ecc31fd..0000000000 --- a/docs/version-specific/supported-software/f/FMRIprep.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FMRIprep - -FMRIprep is a functional magnetic resonance imaging (fMRI) data preprocessing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to variations in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.8`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.4.1`` | ``-Python-3.6.6`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FMS.md b/docs/version-specific/supported-software/f/FMS.md index ff4b957914..8b73ece687 100644 --- a/docs/version-specific/supported-software/f/FMS.md +++ b/docs/version-specific/supported-software/f/FMS.md @@ -4,7 +4,7 @@ search: --- # FMS -The Flexible Modeling System (FMS) is a software framework for supporting the efficient development, construction, execution, and scientific interpretation of atmospheric, oceanic, and climate system models. +The Flexible Modeling System (FMS) is a software framework for supporting the efficient development, construction, execution, and scientific interpretation of atmospheric, oceanic, and climate system models. *homepage*: diff --git a/docs/version-specific/supported-software/f/FOX-Toolkit.md b/docs/version-specific/supported-software/f/FOX-Toolkit.md index 0318a8a90a..ab530115ce 100644 --- a/docs/version-specific/supported-software/f/FOX-Toolkit.md +++ b/docs/version-specific/supported-software/f/FOX-Toolkit.md @@ -11,7 +11,6 @@ FOX is a C++ based Toolkit for developing Graphical User Interfaces easily and e version | toolchain --------|---------- ``1.6.57`` | ``GCCcore/11.2.0`` -``1.6.57`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FPM.md b/docs/version-specific/supported-software/f/FPM.md index b34408a299..2309f25b20 100644 --- a/docs/version-specific/supported-software/f/FPM.md +++ b/docs/version-specific/supported-software/f/FPM.md @@ -8,10 +8,9 @@ Effing package management! Build packages for multiple platforms (deb, rpm, etc) *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.15.1`` | | ``GCCcore/12.2.0`` -``1.3.3`` | ``-Ruby-2.1.6`` | ``system`` +version | toolchain +--------|---------- +``1.15.1`` | ``GCCcore/12.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FRANz.md b/docs/version-specific/supported-software/f/FRANz.md deleted file mode 100644 index 4917c7c089..0000000000 --- a/docs/version-specific/supported-software/f/FRANz.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FRANz - -A fast and flexible parentage inference program for natural populations. - -*homepage*: - -version | toolchain ---------|---------- -``2.0.0`` | ``foss/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FRUIT.md b/docs/version-specific/supported-software/f/FRUIT.md deleted file mode 100644 index 908b114eb0..0000000000 --- a/docs/version-specific/supported-software/f/FRUIT.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FRUIT - -FORTRAN Unit Test Framework (FRUIT) - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.4.3`` | ``-Ruby-2.5.1`` | ``foss/2018a`` -``3.4.3`` | ``-Ruby-2.5.1`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FRUIT_processor.md b/docs/version-specific/supported-software/f/FRUIT_processor.md deleted file mode 100644 index 05610339f2..0000000000 --- a/docs/version-specific/supported-software/f/FRUIT_processor.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FRUIT_processor - -FORTRAN Unit Test Framework (FRUIT) - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.4.3`` | ``-Ruby-2.5.1`` | ``foss/2018a`` -``3.4.3`` | ``-Ruby-2.5.1`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FSL.md b/docs/version-specific/supported-software/f/FSL.md index e9d5d8c65b..8ae0537684 100644 --- a/docs/version-specific/supported-software/f/FSL.md +++ b/docs/version-specific/supported-software/f/FSL.md @@ -6,27 +6,11 @@ search: FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``5.0.10`` | | ``foss/2017b`` -``5.0.10`` | | ``intel/2017a`` -``5.0.10`` | | ``intel/2017b`` -``5.0.11`` | ``-Python-3.6.6`` | ``foss/2018b`` -``5.0.11`` | | ``foss/2018b`` -``5.0.9`` | ``-centos6_64`` | ``system`` -``5.0.9`` | ``-Mesa-11.2.1`` | ``intel/2016a`` -``5.0.9`` | | ``intel/2016a`` -``6.0.1`` | ``-Python-2.7.15`` | ``foss/2019a`` -``6.0.1`` | ``-Python-3.7.2`` | ``foss/2019a`` -``6.0.2`` | ``-Python-2.7.15-CUDA-9.2.88`` | ``foss/2018b`` -``6.0.2`` | ``-Python-2.7.15`` | ``foss/2018b`` -``6.0.2`` | ``-Python-2.7.15`` | ``foss/2019a`` -``6.0.2`` | ``-Python-3.7.2`` | ``foss/2019a`` -``6.0.3`` | ``-Python-3.7.4`` | ``foss/2019b`` -``6.0.4`` | ``-Python-3.7.4`` | ``foss/2019b`` -``6.0.5.1`` | | ``foss/2021a`` +version | toolchain +--------|---------- +``6.0.5.1`` | ``foss/2021a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FSLeyes.md b/docs/version-specific/supported-software/f/FSLeyes.md deleted file mode 100644 index 5581234482..0000000000 --- a/docs/version-specific/supported-software/f/FSLeyes.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FSLeyes - -FSLeyes is the FSL image viewer. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.15.0`` | ``-Python-2.7.13`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FTGL.md b/docs/version-specific/supported-software/f/FTGL.md index 53057946cb..54e8853b95 100644 --- a/docs/version-specific/supported-software/f/FTGL.md +++ b/docs/version-specific/supported-software/f/FTGL.md @@ -11,11 +11,6 @@ FTGL is a free open source library to enable developers to use arbitrary fonts i version | toolchain --------|---------- ``2.1.3-rc5`` | ``GCCcore/10.2.0`` -``2.1.3-rc5`` | ``GCCcore/8.2.0`` -``2.1.3-rc5`` | ``foss/2017b`` -``2.1.3-rc5`` | ``foss/2018a`` -``2.1.3-rc5`` | ``fosscuda/2018b`` -``2.1.3-rc5`` | ``intel/2017b`` ``2.4.0`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/f/FUNWAVE-TVD.md b/docs/version-specific/supported-software/f/FUNWAVE-TVD.md deleted file mode 100644 index 92be7f3d3c..0000000000 --- a/docs/version-specific/supported-software/f/FUNWAVE-TVD.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FUNWAVE-TVD - -FUNWAVE–TVD is the TVD version of the fully nonlinear Boussinesq wave model (FUNWAVE) initially developed by Kirby et al. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.1-20170525`` | ``-no-storm`` | ``intel/2017a`` -``3.1-20170525`` | | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FUSE.md b/docs/version-specific/supported-software/f/FUSE.md index 23280f482d..f3d2a9bb01 100644 --- a/docs/version-specific/supported-software/f/FUSE.md +++ b/docs/version-specific/supported-software/f/FUSE.md @@ -13,8 +13,6 @@ version | toolchain ``3.14.1`` | ``GCCcore/11.3.0`` ``3.14.1`` | ``GCCcore/12.2.0`` ``3.16.2`` | ``GCCcore/12.3.0`` -``3.2.6`` | ``intel/2018a`` -``3.4.1`` | ``foss/2018a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FabIO.md b/docs/version-specific/supported-software/f/FabIO.md index 7617be2c2d..b48a0c12d1 100644 --- a/docs/version-specific/supported-software/f/FabIO.md +++ b/docs/version-specific/supported-software/f/FabIO.md @@ -4,17 +4,15 @@ search: --- # FabIO -FabIO is an I/O library for images produced by 2D X-ray detectors and written in Python. FabIO support images detectors from a dozen of companies (including Mar, Dectris, ADSC, Hamamatsu, Oxford, ...), for a total of 20 different file formats (like CBF, EDF, TIFF, ...) and offers an unified interface to their headers (as a python dictionary) and datasets (as a numpy ndarray of integers or floats). +FabIO is an I/O library for images produced by 2D X-ray detectors and written in Python. FabIO support images detectors from a dozen of companies (including Mar, Dectris, ADSC, Hamamatsu, Oxford, ...), for a total of 20 different file formats (like CBF, EDF, TIFF, ...) and offers an unified interface to their headers (as a python dictionary) and datasets (as a numpy ndarray of integers or floats). *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.2`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.10.2`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``0.11.0`` | | ``foss/2020b`` -``0.11.0`` | | ``fosscuda/2020b`` -``0.14.0`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``0.11.0`` | ``foss/2020b`` +``0.11.0`` | ``fosscuda/2020b`` +``0.14.0`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/Faber.md b/docs/version-specific/supported-software/f/Faber.md deleted file mode 100644 index ed3c6b8272..0000000000 --- a/docs/version-specific/supported-software/f/Faber.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Faber - -Faber started as a clone of Boost.Build, to experiment with a new Python frontend. Meanwhile it has evolved into a new build system, which retains most of the features found in Boost.Build, but with (hopefully !) much simplified logic, in addition of course to using Python as scripting language, rather than Jam. The original bjam engine is still in use as scheduler, though at this point that is mostly an implementation detail. - -*homepage*: - -version | toolchain ---------|---------- -``0.3`` | ``GCCcore/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FastANI.md b/docs/version-specific/supported-software/f/FastANI.md index c345e0b8ef..3a0ca5238e 100644 --- a/docs/version-specific/supported-software/f/FastANI.md +++ b/docs/version-specific/supported-software/f/FastANI.md @@ -6,16 +6,10 @@ search: FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two microbial genomes. FastANI supports pairwise comparison of both complete and draft genome assemblies. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.1`` | ``foss/2018b`` -``1.1`` | ``intel/2018b`` -``1.2`` | ``GCC/8.2.0-2.31.1`` -``1.2`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``1.3`` | ``iccifort/2019.5.281`` -``1.31`` | ``iccifort/2020.1.217`` ``1.33`` | ``GCC/10.2.0`` ``1.33`` | ``GCC/10.3.0`` ``1.33`` | ``GCC/11.2.0`` @@ -23,6 +17,7 @@ version | toolchain ``1.33`` | ``iccifort/2020.4.304`` ``1.33`` | ``intel-compilers/2021.4.0`` ``1.34`` | ``GCC/12.3.0`` +``1.34`` | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FastK.md b/docs/version-specific/supported-software/f/FastK.md new file mode 100644 index 0000000000..0c8d66d241 --- /dev/null +++ b/docs/version-specific/supported-software/f/FastK.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# FastK + +FastK is a k‑mer counter that is optimized for processing high quality DNA assembly data sets such as those produced with an Illumina instrument or a PacBio run in HiFi mode. For example it is about 2 times faster than KMC3 when counting 40-mers in a 50X HiFi data set. Its relative speedup decreases with increasing error rate or increasing values of k, but regardless is a general program that works for any DNA sequence data set and choice of k. It is further designed to handle data sets of arbitrarily large size, e.g. a 100X data set of a 32GB Axolotl genome (3.2Tbp) can be performed on a machine with just 12GB of memory provided it has ~6.5TB of disk space available. + +*homepage*: + +version | toolchain +--------|---------- +``1.1.0`` | ``GCC/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/f/FastME.md b/docs/version-specific/supported-software/f/FastME.md index d1260a1cd4..52fe2dd293 100644 --- a/docs/version-specific/supported-software/f/FastME.md +++ b/docs/version-specific/supported-software/f/FastME.md @@ -10,12 +10,7 @@ FastME: a comprehensive, accurate and fast distance-based phylogeny inference pr version | toolchain --------|---------- -``2.1.5`` | ``foss/2016a`` ``2.1.6.1`` | ``GCC/10.2.0`` -``2.1.6.1`` | ``GCC/8.3.0`` -``2.1.6.1`` | ``iccifort/2019.5.281`` -``2.1.6.1`` | ``intel/2018a`` -``2.1.6.1`` | ``intel/2018b`` ``2.1.6.3`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/f/FastQC.md b/docs/version-specific/supported-software/f/FastQC.md index f3a2bcd4a4..e627e00585 100644 --- a/docs/version-specific/supported-software/f/FastQC.md +++ b/docs/version-specific/supported-software/f/FastQC.md @@ -4,23 +4,12 @@ search: --- # FastQC -FastQC is a quality control application for high throughput sequence data. It reads in sequence data in a variety of formats and can either provide an interactive application to review the results of several different QC checks, or create an HTML based report which can be integrated into a pipeline. +FastQC is a quality control application for high throughput sequence data. It reads in sequence data in a variety of formats and can either provide an interactive application to review the results of several different QC checks, or create an HTML based report which can be integrated into a pipeline. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``0.10.1`` | ``-Java-1.7.0_80`` | ``system`` -``0.11.2`` | ``-Java-1.7.0_60`` | ``system`` -``0.11.3`` | ``-Java-1.7.0_80`` | ``system`` -``0.11.4`` | ``-Java-1.8.0_66`` | ``system`` -``0.11.4`` | ``-Java-1.8.0_74`` | ``system`` -``0.11.5`` | ``-Java-1.7.0_80`` | ``system`` -``0.11.5`` | ``-Java-1.8.0_144`` | ``system`` -``0.11.5`` | ``-Java-1.8.0_74`` | ``system`` -``0.11.7`` | ``-Java-1.8.0_162`` | ``system`` -``0.11.8`` | ``-Java-1.8`` | ``system`` -``0.11.8`` | ``-Java-11`` | ``system`` ``0.11.9`` | ``-Java-1.8`` | ``system`` ``0.11.9`` | ``-Java-11`` | ``system`` ``0.12.1`` | ``-Java-11`` | ``system`` diff --git a/docs/version-specific/supported-software/f/FastQTL.md b/docs/version-specific/supported-software/f/FastQTL.md index 3506af94b6..9af4a0a6a3 100644 --- a/docs/version-specific/supported-software/f/FastQTL.md +++ b/docs/version-specific/supported-software/f/FastQTL.md @@ -11,7 +11,6 @@ FastQTL is a QTL mapper version | toolchain --------|---------- ``2.184`` | ``GCC/11.2.0`` -``2.184`` | ``foss/2018b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FastQ_Screen.md b/docs/version-specific/supported-software/f/FastQ_Screen.md index d11cc08f2f..f2ad115128 100644 --- a/docs/version-specific/supported-software/f/FastQ_Screen.md +++ b/docs/version-specific/supported-software/f/FastQ_Screen.md @@ -8,13 +8,9 @@ FastQ Screen allows you to screen a library of sequences in FastQ format agains *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.11.3`` | ``-Perl-5.24.0`` | ``foss/2016b`` -``0.11.4`` | ``-Perl-5.24.0`` | ``foss/2016b`` -``0.12.0`` | ``-Perl-5.26.1`` | ``intel/2018a`` -``0.13.0`` | ``-Perl-5.28.0`` | ``foss/2018b`` -``0.14.0`` | | ``GCC/11.3.0`` +version | toolchain +--------|---------- +``0.14.0`` | ``GCC/11.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FastRFS.md b/docs/version-specific/supported-software/f/FastRFS.md deleted file mode 100644 index a270bc5077..0000000000 --- a/docs/version-specific/supported-software/f/FastRFS.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FastRFS - -Fast Robinson Foulds Supertrees - -*homepage*: - -version | toolchain ---------|---------- -``1.0-20190613`` | ``gompi/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FastTree.md b/docs/version-specific/supported-software/f/FastTree.md index e27f032294..f706cd5fb8 100644 --- a/docs/version-specific/supported-software/f/FastTree.md +++ b/docs/version-specific/supported-software/f/FastTree.md @@ -10,10 +10,6 @@ FastTree infers approximately-maximum-likelihood phylogenetic trees from alignme version | toolchain --------|---------- -``2.1.10`` | ``foss/2018b`` -``2.1.10`` | ``intel/2017b`` -``2.1.10`` | ``intel/2018a`` -``2.1.10`` | ``intel/2018b`` ``2.1.11`` | ``GCCcore/10.2.0`` ``2.1.11`` | ``GCCcore/10.3.0`` ``2.1.11`` | ``GCCcore/11.2.0`` @@ -21,9 +17,6 @@ version | toolchain ``2.1.11`` | ``GCCcore/12.2.0`` ``2.1.11`` | ``GCCcore/12.3.0`` ``2.1.11`` | ``GCCcore/13.2.0`` -``2.1.11`` | ``GCCcore/8.2.0`` -``2.1.11`` | ``GCCcore/8.3.0`` -``2.1.11`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FastViromeExplorer.md b/docs/version-specific/supported-software/f/FastViromeExplorer.md deleted file mode 100644 index b92df8290a..0000000000 --- a/docs/version-specific/supported-software/f/FastViromeExplorer.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FastViromeExplorer - -Identify the viruses/phages and their abundance in the viral metagenomics data. - -*homepage*: - -version | toolchain ---------|---------- -``20180422`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FastaIndex.md b/docs/version-specific/supported-software/f/FastaIndex.md deleted file mode 100644 index 6bd9f62f04..0000000000 --- a/docs/version-specific/supported-software/f/FastaIndex.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FastaIndex - -FastA index (.fai) handler compatible with samtools faidx - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.11rc7`` | ``-Python-2.7.14`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/Ferret.md b/docs/version-specific/supported-software/f/Ferret.md index dd3ecdf974..7ad25c663b 100644 --- a/docs/version-specific/supported-software/f/Ferret.md +++ b/docs/version-specific/supported-software/f/Ferret.md @@ -6,12 +6,10 @@ search: Ferret is an interactive computer visualization and analysis environment designed to meet the needs of oceanographers and meteorologists analyzing large and complex gridded data sets. -*homepage*: +*homepage*: version | toolchain --------|---------- -``7.3`` | ``intel/2017b`` -``7.5.0`` | ``foss/2019b`` ``7.6.0`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/f/FigureGen.md b/docs/version-specific/supported-software/f/FigureGen.md deleted file mode 100644 index 5a8f44b8c9..0000000000 --- a/docs/version-specific/supported-software/f/FigureGen.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FigureGen - -FigureGen is a Fortran program that creates images for ADCIRC files. It reads mesh files (fort.14, etc.), nodal attributes files (fort.13, etc.) and output files (fort.63, fort.64, maxele.63, etc.). It plots contours, contour lines, and vectors. Using FigureGen, you can go directly from the ADCIRC input and output files to a presentation-quality figure, for one or multiple time snaps. - -*homepage*: - -version | toolchain ---------|---------- -``51-20190516`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/Fiji.md b/docs/version-specific/supported-software/f/Fiji.md index 4f8c9b482c..297b8e83c6 100644 --- a/docs/version-specific/supported-software/f/Fiji.md +++ b/docs/version-specific/supported-software/f/Fiji.md @@ -6,14 +6,13 @@ search: Fiji is an image processing package—a 'batteries-included' distribution of ImageJ, bundling a lot of plugins which facilitate scientific image analysis. This release is based on ImageJ-2.1.0 and Fiji-2.1.1 -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- +``2.14.0`` | ``-Java-11`` | ``system`` ``2.9.0`` | ``-Java-1.8`` | ``system`` ``2.9.0`` | ``-Java-8`` | ``system`` -``20170530`` | | ``system`` -``20191119-2057`` | | ``system`` ``20201104-1356`` | | ``system`` diff --git a/docs/version-specific/supported-software/f/Filtlong.md b/docs/version-specific/supported-software/f/Filtlong.md index b0c0acb12a..deab305ac6 100644 --- a/docs/version-specific/supported-software/f/Filtlong.md +++ b/docs/version-specific/supported-software/f/Filtlong.md @@ -11,7 +11,6 @@ Filtlong is a tool for filtering long reads by quality. It can take a set of lo version | toolchain --------|---------- ``0.2.0`` | ``GCC/10.2.0`` -``0.2.0`` | ``foss/2016b`` ``0.2.1`` | ``GCC/10.3.0`` ``0.2.1`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/f/Fiona.md b/docs/version-specific/supported-software/f/Fiona.md index a2af9ff232..a13a08577e 100644 --- a/docs/version-specific/supported-software/f/Fiona.md +++ b/docs/version-specific/supported-software/f/Fiona.md @@ -8,20 +8,16 @@ Fiona is designed to be simple and dependable. It focuses on reading and writing *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.8.13`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.8.13`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``1.8.13`` | ``-Python-3.7.4`` | ``intel/2019b`` -``1.8.13.post1`` | ``-Python-3.7.2`` | ``foss/2019a`` -``1.8.16`` | ``-Python-3.8.2`` | ``foss/2020a`` -``1.8.20`` | | ``foss/2020b`` -``1.8.20`` | | ``foss/2021a`` -``1.8.20`` | | ``intel/2020b`` -``1.8.21`` | | ``foss/2021b`` -``1.8.21`` | | ``foss/2022a`` -``1.9.2`` | | ``foss/2022b`` -``1.9.5`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``1.10.1`` | ``foss/2024a`` +``1.8.20`` | ``foss/2020b`` +``1.8.20`` | ``foss/2021a`` +``1.8.20`` | ``intel/2020b`` +``1.8.21`` | ``foss/2021b`` +``1.8.21`` | ``foss/2022a`` +``1.9.2`` | ``foss/2022b`` +``1.9.5`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FireWorks.md b/docs/version-specific/supported-software/f/FireWorks.md deleted file mode 100644 index 822e622eb4..0000000000 --- a/docs/version-specific/supported-software/f/FireWorks.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FireWorks - -FireWorks helps run calculation workflows, with a centralized workflow server controlling many worker nodes. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.4.2`` | ``-Python-2.7.13`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/Firefox.md b/docs/version-specific/supported-software/f/Firefox.md deleted file mode 100644 index 542ddc6f10..0000000000 --- a/docs/version-specific/supported-software/f/Firefox.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Firefox - -Firefox is a free, open source Web browser for Windows, Linux and Mac OS X. It is based on the Mozilla code base and offers customization options and features such as its capability to block pop-up windows, tabbed browsing, privacy and security measures, smart searching, and RSS live bookmarks. - -*homepage*: - -version | toolchain ---------|---------- -``44.0.2`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/Flask.md b/docs/version-specific/supported-software/f/Flask.md index b9e35d6501..23988d34e3 100644 --- a/docs/version-specific/supported-software/f/Flask.md +++ b/docs/version-specific/supported-software/f/Flask.md @@ -4,23 +4,20 @@ search: --- # Flask -" Flask is a lightweight WSGI web application framework. It is designed to make getting started quick and easy, with the ability to scale up to complex applications. +Flask is a lightweight WSGI web application framework. It is designed to make getting started quick and easy, with the ability to scale up to complex applications. This module includes the Flask extensions: Flask-Cors *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.2`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.1.2`` | | ``GCCcore/10.2.0`` -``1.1.2`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``1.1.2`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` -``1.1.4`` | | ``GCCcore/10.3.0`` -``2.0.2`` | | ``GCCcore/11.2.0`` -``2.2.2`` | | ``GCCcore/11.3.0`` -``2.2.3`` | | ``GCCcore/12.2.0`` -``2.3.3`` | | ``GCCcore/12.3.0`` -``3.0.0`` | | ``GCCcore/13.2.0`` -``3.0.3`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``1.1.2`` | ``GCCcore/10.2.0`` +``1.1.4`` | ``GCCcore/10.3.0`` +``2.0.2`` | ``GCCcore/11.2.0`` +``2.2.2`` | ``GCCcore/11.3.0`` +``2.2.3`` | ``GCCcore/12.2.0`` +``2.3.3`` | ``GCCcore/12.3.0`` +``3.0.0`` | ``GCCcore/13.2.0`` +``3.0.3`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/Flexbar.md b/docs/version-specific/supported-software/f/Flexbar.md deleted file mode 100644 index db9833843c..0000000000 --- a/docs/version-specific/supported-software/f/Flexbar.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Flexbar - -The program Flexbar preprocesses high-throughput sequencing data efficiently - -*homepage*: - -version | toolchain ---------|---------- -``3.5.0`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FlexiDot.md b/docs/version-specific/supported-software/f/FlexiDot.md deleted file mode 100644 index 1fc3385ccf..0000000000 --- a/docs/version-specific/supported-software/f/FlexiDot.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FlexiDot - -Highly customizable, ambiguity-aware dotplots for visual sequence analyses - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.06`` | ``-Python-2.7.15`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/ASTRID.md b/docs/version-specific/supported-software/f/FloPy.md similarity index 81% rename from docs/version-specific/supported-software/a/ASTRID.md rename to docs/version-specific/supported-software/f/FloPy.md index c619742b74..25904a0f82 100644 --- a/docs/version-specific/supported-software/a/ASTRID.md +++ b/docs/version-specific/supported-software/f/FloPy.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# ASTRID +# FloPy -ASTRID-2 is a method for estimating species trees from gene trees. +FloPy is a Python package to create, run, and post-process MODFLOW-based models -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.2.1`` | ``gompi/2019a`` +``3.8.2`` | ``gfbf/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/Flye.md b/docs/version-specific/supported-software/f/Flye.md index 6f92311389..52269609c5 100644 --- a/docs/version-specific/supported-software/f/Flye.md +++ b/docs/version-specific/supported-software/f/Flye.md @@ -8,22 +8,18 @@ Flye is a de novo assembler for long and noisy reads, such as those produced by *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.4`` | ``-Python-2.7.15`` | ``intel/2018b`` -``2.6`` | ``-Python-3.7.2`` | ``foss/2019a`` -``2.6`` | ``-Python-3.7.4`` | ``intel/2019b`` -``2.8.1`` | ``-Python-3.8.2`` | ``intel/2020a`` -``2.8.2`` | ``-Python-3.8.2`` | ``foss/2020a`` -``2.8.3`` | | ``GCC/10.2.0`` -``2.8.3`` | | ``iccifort/2020.4.304`` -``2.9`` | | ``GCC/10.3.0`` -``2.9`` | | ``intel-compilers/2021.2.0`` -``2.9.1`` | | ``GCC/11.2.0`` -``2.9.2`` | | ``GCC/11.3.0`` -``2.9.3`` | | ``GCC/10.3.0`` -``2.9.3`` | | ``GCC/12.3.0`` -``2.9.4`` | | ``GCC/13.2.0`` +version | toolchain +--------|---------- +``2.8.3`` | ``GCC/10.2.0`` +``2.8.3`` | ``iccifort/2020.4.304`` +``2.9`` | ``GCC/10.3.0`` +``2.9`` | ``intel-compilers/2021.2.0`` +``2.9.1`` | ``GCC/11.2.0`` +``2.9.2`` | ``GCC/11.3.0`` +``2.9.3`` | ``GCC/10.3.0`` +``2.9.3`` | ``GCC/12.3.0`` +``2.9.4`` | ``GCC/13.2.0`` +``2.9.5`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FoX.md b/docs/version-specific/supported-software/f/FoX.md index 2374ad37f4..6280fb97fd 100644 --- a/docs/version-specific/supported-software/f/FoX.md +++ b/docs/version-specific/supported-software/f/FoX.md @@ -11,9 +11,6 @@ FoX is an XML library written in Fortran 95. It allows software developers to re version | toolchain --------|---------- ``4.1.2`` | ``GCC/11.2.0`` -``4.1.2`` | ``GCC/9.3.0`` -``4.1.2`` | ``intel/2017b`` -``4.1.2`` | ``intel/2018a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FoldX.md b/docs/version-specific/supported-software/f/FoldX.md deleted file mode 100644 index dc90f570d2..0000000000 --- a/docs/version-specific/supported-software/f/FoldX.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FoldX - -FoldX is used to provide a fast and quantitative estimation of the importance of the interactions contributing to the stability of proteins and protein complexes. - -*homepage*: - -version | toolchain ---------|---------- -``2.5.2`` | ``system`` -``3.0-beta5.1`` | ``system`` -``3.0-beta6.1`` | ``system`` -``3.0-beta6`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FragGeneScan.md b/docs/version-specific/supported-software/f/FragGeneScan.md index a36accdecc..7a1409228f 100644 --- a/docs/version-specific/supported-software/f/FragGeneScan.md +++ b/docs/version-specific/supported-software/f/FragGeneScan.md @@ -15,8 +15,6 @@ version | toolchain ``1.31`` | ``GCCcore/11.2.0`` ``1.31`` | ``GCCcore/11.3.0`` ``1.31`` | ``GCCcore/12.3.0`` -``1.31`` | ``GCCcore/8.2.0`` -``1.31`` | ``foss/2018b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FreeFEM.md b/docs/version-specific/supported-software/f/FreeFEM.md deleted file mode 100644 index 7c04879c9d..0000000000 --- a/docs/version-specific/supported-software/f/FreeFEM.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FreeFEM - -FreeFEM offers a fast interpolation algorithm and a language for the manipulation of data on multiple meshes. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``4.5`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FreeFem++.md b/docs/version-specific/supported-software/f/FreeFem++.md deleted file mode 100644 index 148bbfdb9f..0000000000 --- a/docs/version-specific/supported-software/f/FreeFem++.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FreeFem++ - -FreeFem++ is a partial differential equation solver. It has its own language. freefem scripts can solve multiphysics non linear systems in 2D and 3D. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.58`` | ``-downloaded-deps`` | ``foss/2017b`` -``3.60`` | ``-downloaded-deps`` | ``intel/2018a`` -``3.61-1`` | ``-downloaded-deps`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FreeImage.md b/docs/version-specific/supported-software/f/FreeImage.md index dd92801114..17386a78c9 100644 --- a/docs/version-specific/supported-software/f/FreeImage.md +++ b/docs/version-specific/supported-software/f/FreeImage.md @@ -16,9 +16,7 @@ version | toolchain ``3.18.0`` | ``GCCcore/11.3.0`` ``3.18.0`` | ``GCCcore/12.2.0`` ``3.18.0`` | ``GCCcore/12.3.0`` -``3.18.0`` | ``GCCcore/7.3.0`` -``3.18.0`` | ``GCCcore/8.3.0`` -``3.18.0`` | ``GCCcore/9.3.0`` +``3.18.0`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FreeSASA.md b/docs/version-specific/supported-software/f/FreeSASA.md deleted file mode 100644 index 529d49037e..0000000000 --- a/docs/version-specific/supported-software/f/FreeSASA.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FreeSASA - -FreeSASA is a command line tool, C-library and Python module for calculating solvent accessible surface areas (SASA). - -*homepage*: - -version | toolchain ---------|---------- -``2.0.3`` | ``GCC/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FreeSurfer.md b/docs/version-specific/supported-software/f/FreeSurfer.md index cc5ff1cc34..6ad3740094 100644 --- a/docs/version-specific/supported-software/f/FreeSurfer.md +++ b/docs/version-specific/supported-software/f/FreeSurfer.md @@ -4,16 +4,12 @@ search: --- # FreeSurfer -FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data. FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data. +FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data. FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``5.3.0`` | ``-centos4_x86_64`` | ``system`` -``5.3.0`` | ``-centos6_x86_64`` | ``system`` -``6.0.0`` | ``-centos6_x86_64`` | ``system`` -``6.0.1`` | ``-centos6_x86_64`` | ``system`` ``7.1.1`` | ``-centos6_x86_64`` | ``system`` ``7.1.1`` | ``-centos7_x86_64`` | ``system`` ``7.1.1`` | ``-centos8_x86_64`` | ``system`` diff --git a/docs/version-specific/supported-software/f/FreeXL.md b/docs/version-specific/supported-software/f/FreeXL.md index 9a40777b85..9604b40d33 100644 --- a/docs/version-specific/supported-software/f/FreeXL.md +++ b/docs/version-specific/supported-software/f/FreeXL.md @@ -10,13 +10,8 @@ FreeXL is an open source library to extract valid data from within an Excel (.xl version | toolchain --------|---------- -``1.0.2`` | ``foss/2016b`` -``1.0.2`` | ``intel/2016b`` -``1.0.3`` | ``GCCcore/6.4.0`` -``1.0.5`` | ``GCCcore/7.3.0`` -``1.0.5`` | ``GCCcore/8.2.0`` -``1.0.5`` | ``GCCcore/8.3.0`` ``1.0.6`` | ``GCCcore/11.2.0`` +``2.0.0`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FriBidi.md b/docs/version-specific/supported-software/f/FriBidi.md index 9357cb33e2..6fcfc1e7c8 100644 --- a/docs/version-specific/supported-software/f/FriBidi.md +++ b/docs/version-specific/supported-software/f/FriBidi.md @@ -4,14 +4,12 @@ search: --- # FriBidi -FriBidi is a free implementation of the Unicode Bidirectional (BiDi) Algorithm. It also provides utility functions to aid in the development of interactive editors and widgets that implement BiDi functionality. The BiDi algorithm is a prerequisite for supporting right-to-left scripts such as Hebrew, Arabic, Syriac, and Thaana. +The Free Implementation of the Unicode Bidirectional Algorithm. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.0.1`` | ``foss/2018a`` -``1.0.1`` | ``intel/2018a`` ``1.0.10`` | ``GCCcore/10.2.0`` ``1.0.10`` | ``GCCcore/10.3.0`` ``1.0.10`` | ``GCCcore/11.2.0`` @@ -20,11 +18,6 @@ version | toolchain ``1.0.12`` | ``GCCcore/12.3.0`` ``1.0.13`` | ``GCCcore/13.2.0`` ``1.0.15`` | ``GCCcore/13.3.0`` -``1.0.2`` | ``GCCcore/6.4.0`` -``1.0.5`` | ``GCCcore/7.3.0`` -``1.0.5`` | ``GCCcore/8.2.0`` -``1.0.5`` | ``GCCcore/8.3.0`` -``1.0.9`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FuSeq.md b/docs/version-specific/supported-software/f/FuSeq.md deleted file mode 100644 index 1598e7c767..0000000000 --- a/docs/version-specific/supported-software/f/FuSeq.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FuSeq - -FuSeq is a novel method to discover fusion genes from paired-end RNA sequencing data. - -*homepage*: - -version | toolchain ---------|---------- -``1.1.2`` | ``gompi/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FusionCatcher.md b/docs/version-specific/supported-software/f/FusionCatcher.md deleted file mode 100644 index 28af17f029..0000000000 --- a/docs/version-specific/supported-software/f/FusionCatcher.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FusionCatcher - -FusionCatcher searches for novel/known somatic fusion genes, translocations, and chimeras in RNA-seq data (paired-end or single-end reads from Illumina NGS platforms like Solexa/HiSeq/NextSeq/MiSeq/MiniSeq) from diseased samples. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.20`` | ``-Python-2.7.16`` | ``foss/2019b`` -``1.30`` | ``-Python-2.7.16`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/f90cache.md b/docs/version-specific/supported-software/f/f90cache.md deleted file mode 100644 index 381ac457aa..0000000000 --- a/docs/version-specific/supported-software/f/f90cache.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# f90cache - -f90cache is a compiler cache. It acts as a caching pre-processor to Fortran compilers, using the -E compiler switch and a hash to detect when a compilation can be satisfied from cache. This often results in a great speedup in common compilations. - -*homepage*: - -version | toolchain ---------|---------- -``0.96`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/face-recognition.md b/docs/version-specific/supported-software/f/face-recognition.md new file mode 100644 index 0000000000..6e3cb9ea4b --- /dev/null +++ b/docs/version-specific/supported-software/f/face-recognition.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# face-recognition + +Recognize and manipulate faces from Python or from the command line with the world’s simplest face recognition library. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``1.3.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/f/faceswap.md b/docs/version-specific/supported-software/f/faceswap.md deleted file mode 100644 index b1e8d60e03..0000000000 --- a/docs/version-specific/supported-software/f/faceswap.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# faceswap - -Faceswap is a tool that utilizes deep learning to recognize and swap faces in pictures and videos. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20180212`` | ``-Python-3.6.3`` | ``foss/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/fast5.md b/docs/version-specific/supported-software/f/fast5.md deleted file mode 100644 index 801c492478..0000000000 --- a/docs/version-specific/supported-software/f/fast5.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# fast5 - -A lightweight C++ library for accessing Oxford Nanopore Technologies sequencing data. - -*homepage*: - -version | toolchain ---------|---------- -``0.6.5`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/fastPHASE.md b/docs/version-specific/supported-software/f/fastPHASE.md deleted file mode 100644 index 8a554d4e68..0000000000 --- a/docs/version-specific/supported-software/f/fastPHASE.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# fastPHASE - -fastPHASE: software for haplotype reconstruction, and estimating missing genotypes from population data Documentation: http://scheet.org/code/fastphase_doc_1.4.pdf - -*homepage*: - -version | toolchain ---------|---------- -``1.4.8`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/fastStructure.md b/docs/version-specific/supported-software/f/fastStructure.md deleted file mode 100644 index 9778959f43..0000000000 --- a/docs/version-specific/supported-software/f/fastStructure.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# fastStructure - -fastStructure is an algorithm for inferring population structure from large SNP genotype data. It is based on a variational Bayesian framework for posterior inference and is written in Python2.x. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``1.0`` | ``-Python-2.7.12`` | ``foss/2016b`` -``1.0`` | ``-Python-2.7.13`` | ``foss/2017a`` -``1.0`` | ``-Python-2.7.15`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/fastText.md b/docs/version-specific/supported-software/f/fastText.md new file mode 100644 index 0000000000..f8113edd30 --- /dev/null +++ b/docs/version-specific/supported-software/f/fastText.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# fastText + +fastText is a library for efficient learning of word representations and sentence classification + +*homepage*: + +version | toolchain +--------|---------- +``0.9.2-20240313`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/f/fastahack.md b/docs/version-specific/supported-software/f/fastahack.md index 9cf9c2c088..de96f1db5f 100644 --- a/docs/version-specific/supported-software/f/fastahack.md +++ b/docs/version-specific/supported-software/f/fastahack.md @@ -16,7 +16,6 @@ version | toolchain ``1.0.0`` | ``GCCcore/11.3.0`` ``1.0.0`` | ``GCCcore/12.2.0`` ``1.0.0`` | ``GCCcore/12.3.0`` -``1.0.0`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/fastai.md b/docs/version-specific/supported-software/f/fastai.md index 263a77ee61..ad9844108e 100644 --- a/docs/version-specific/supported-software/f/fastai.md +++ b/docs/version-specific/supported-software/f/fastai.md @@ -12,6 +12,8 @@ version | versionsuffix | toolchain --------|---------------|---------- ``2.7.10`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``2.7.10`` | | ``foss/2022a`` +``2.7.15`` | | ``foss/2022b`` +``2.7.18`` | | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/fastp.md b/docs/version-specific/supported-software/f/fastp.md index afd4750c6d..a2e35ac0ea 100644 --- a/docs/version-specific/supported-software/f/fastp.md +++ b/docs/version-specific/supported-software/f/fastp.md @@ -4,17 +4,12 @@ search: --- # fastp -A tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance. +A tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance. *homepage*: version | toolchain --------|---------- -``0.19.7`` | ``foss/2018b`` -``0.20.0`` | ``GCC/8.2.0-2.31.1`` -``0.20.0`` | ``GCC/8.3.0`` -``0.20.0`` | ``iccifort/2019.5.281`` -``0.20.1`` | ``iccifort/2020.1.217`` ``0.23.2`` | ``GCC/10.3.0`` ``0.23.2`` | ``GCC/11.2.0`` ``0.23.2`` | ``GCC/11.3.0`` diff --git a/docs/version-specific/supported-software/f/fastparquet.md b/docs/version-specific/supported-software/f/fastparquet.md index 1e9a710551..8143be8c0f 100644 --- a/docs/version-specific/supported-software/f/fastparquet.md +++ b/docs/version-specific/supported-software/f/fastparquet.md @@ -13,6 +13,7 @@ version | toolchain ``0.7.2`` | ``foss/2021a`` ``0.8.0`` | ``foss/2021b`` ``2023.4.0`` | ``gfbf/2022b`` +``2024.11.0`` | ``gfbf/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/fastq-pair.md b/docs/version-specific/supported-software/f/fastq-pair.md deleted file mode 100644 index 660e9fab8d..0000000000 --- a/docs/version-specific/supported-software/f/fastq-pair.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# fastq-pair - -Match up paired end fastq files quickly and efficiently. - -*homepage*: - -version | toolchain ---------|---------- -``1.0`` | ``GCCcore/8.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/fastq-tools.md b/docs/version-specific/supported-software/f/fastq-tools.md index 8c3ddccc05..6404e3ffda 100644 --- a/docs/version-specific/supported-software/f/fastq-tools.md +++ b/docs/version-specific/supported-software/f/fastq-tools.md @@ -10,8 +10,6 @@ This package provides a number of small and efficient programs to perform commo version | toolchain --------|---------- -``0.8`` | ``foss/2016b`` -``0.8`` | ``foss/2018b`` ``0.8.3`` | ``GCC/10.3.0`` ``0.8.3`` | ``GCC/11.2.0`` diff --git a/docs/version-specific/supported-software/f/fastqsplitter.md b/docs/version-specific/supported-software/f/fastqsplitter.md deleted file mode 100644 index 3ec87044b4..0000000000 --- a/docs/version-specific/supported-software/f/fastqsplitter.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# fastqsplitter - -Splits fastq files evenly. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.0`` | ``-Python-3.7.2`` | ``GCCcore/8.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/fastqz.md b/docs/version-specific/supported-software/f/fastqz.md deleted file mode 100644 index 25db813e5a..0000000000 --- a/docs/version-specific/supported-software/f/fastqz.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# fastqz - -fastqz is a compressor for FASTQ files. FASTQ is the output of DNA sequencing machines. It is one of the compressors described in the paper: Bonfield JK, Mahoney MV (2013) Compression of FASTQ and SAM Format Sequencing Data. (mirror) PLoS ONE 8(3): e59190. doi:10.1371/journal.pone.0059190 - -*homepage*: - -version | toolchain ---------|---------- -``1.5`` | ``GCC/4.8.2`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/fatslim.md b/docs/version-specific/supported-software/f/fatslim.md deleted file mode 100644 index c374d1a685..0000000000 --- a/docs/version-specific/supported-software/f/fatslim.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# fatslim - -FATSLiM stands for “Fast Analysis Toolbox for Simulations of Lipid Membranes” and its goal is to provide an efficient, yet robust, tool to extract physical parameters from MD trajectories. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.2.1`` | ``-Python-3.6.4`` | ``foss/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/fbm.md b/docs/version-specific/supported-software/f/fbm.md deleted file mode 100644 index bc4a0407fc..0000000000 --- a/docs/version-specific/supported-software/f/fbm.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# fbm - -Exact methods for simulating fractional Brownian motion and fractional Gaussian noise in Python - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.2.0`` | ``-Python-3.6.4`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/fdstools.md b/docs/version-specific/supported-software/f/fdstools.md deleted file mode 100644 index 8ceb545027..0000000000 --- a/docs/version-specific/supported-software/f/fdstools.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# fdstools - -Forensic DNA Sequencing Tools Tools for characterisation and filtering of PCR stutter artefacts and other systemic noise in Next Generation Sequencing data of forensic STR markers. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20160322`` | ``-Python-2.7.11`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/feh.md b/docs/version-specific/supported-software/f/feh.md index 0fb19f1596..8f95a25cab 100644 --- a/docs/version-specific/supported-software/f/feh.md +++ b/docs/version-specific/supported-software/f/feh.md @@ -10,7 +10,7 @@ feh is an X11 image viewer aimed mostly at console users. Unlike most other view version | toolchain --------|---------- -``2.26`` | ``GCCcore/6.4.0`` +``3.10.3`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/fermi-lite.md b/docs/version-specific/supported-software/f/fermi-lite.md index 53e9b6177c..72d0eae803 100644 --- a/docs/version-specific/supported-software/f/fermi-lite.md +++ b/docs/version-specific/supported-software/f/fermi-lite.md @@ -14,7 +14,6 @@ version | toolchain ``20190320`` | ``GCCcore/10.3.0`` ``20190320`` | ``GCCcore/11.2.0`` ``20190320`` | ``GCCcore/12.3.0`` -``20190320`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/festival.md b/docs/version-specific/supported-software/f/festival.md index 1a89be38a6..679167a045 100644 --- a/docs/version-specific/supported-software/f/festival.md +++ b/docs/version-specific/supported-software/f/festival.md @@ -11,7 +11,6 @@ University of Edinburgh's Festival Speech Synthesis Systems is a free software m version | toolchain --------|---------- ``2.5.0`` | ``GCCcore/12.3.0`` -``2.5.0`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/fetchMG.md b/docs/version-specific/supported-software/f/fetchMG.md deleted file mode 100644 index 00a73b6e8b..0000000000 --- a/docs/version-specific/supported-software/f/fetchMG.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# fetchMG - -The program “fetchMG” was written to extract the 40 MGs from genomes and metagenomes in an easy and accurate manner. - -*homepage*: - -version | toolchain ---------|---------- -``1.0`` | ``GCCcore/8.3.0`` -``1.0`` | ``GCCcore/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/ffnet.md b/docs/version-specific/supported-software/f/ffnet.md deleted file mode 100644 index 2906fa56f3..0000000000 --- a/docs/version-specific/supported-software/f/ffnet.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ffnet - -Feed-forward neural network solution for python - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.8.3`` | ``-Python-2.7.11`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/file.md b/docs/version-specific/supported-software/f/file.md index 766417b8da..b610cca27d 100644 --- a/docs/version-specific/supported-software/f/file.md +++ b/docs/version-specific/supported-software/f/file.md @@ -6,18 +6,10 @@ search: The file command is 'a file type guesser', that is, a command-line tool that tells you in words what kind of data a file contains. -*homepage*: +*homepage*: version | toolchain --------|---------- -``5.17`` | ``GCC/4.8.2`` -``5.25`` | ``intel/2016a`` -``5.28`` | ``foss/2016b`` -``5.30`` | ``intel/2017a`` -``5.33`` | ``GCCcore/6.4.0`` -``5.35`` | ``GCCcore/7.3.0`` -``5.38`` | ``GCCcore/8.3.0`` -``5.38`` | ``GCCcore/9.3.0`` ``5.39`` | ``GCCcore/10.2.0`` ``5.40`` | ``GCCcore/10.3.0`` ``5.41`` | ``GCCcore/11.2.0`` @@ -25,6 +17,7 @@ version | toolchain ``5.43`` | ``GCCcore/12.2.0`` ``5.43`` | ``GCCcore/12.3.0`` ``5.43`` | ``GCCcore/13.2.0`` +``5.46`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/filevercmp.md b/docs/version-specific/supported-software/f/filevercmp.md index 322a84cc02..5b9b7e397f 100644 --- a/docs/version-specific/supported-software/f/filevercmp.md +++ b/docs/version-specific/supported-software/f/filevercmp.md @@ -10,7 +10,6 @@ filevercmp function as in sort --version-sort. version | toolchain --------|---------- -``20141119`` | ``GCCcore/9.3.0`` ``20191210`` | ``GCCcore/10.2.0`` ``20191210`` | ``GCCcore/10.3.0`` ``20191210`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/f/find_circ.md b/docs/version-specific/supported-software/f/find_circ.md deleted file mode 100644 index c7c52a6635..0000000000 --- a/docs/version-specific/supported-software/f/find_circ.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# find_circ - -circRNA detection from RNA-seq reads - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2-20170228`` | ``-Python-2.7.14`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/findhap.md b/docs/version-specific/supported-software/f/findhap.md deleted file mode 100644 index 800305fc75..0000000000 --- a/docs/version-specific/supported-software/f/findhap.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# findhap - -Find haplotypes and impute genotypes using multiple chip sets and sequence data - -*homepage*: - -version | toolchain ---------|---------- -``4`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/findutils.md b/docs/version-specific/supported-software/f/findutils.md deleted file mode 100644 index accff7545b..0000000000 --- a/docs/version-specific/supported-software/f/findutils.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# findutils - -findutils: The GNU find, locate, updatedb, and xargs utilities - -*homepage*: - -version | toolchain ---------|---------- -``4.4.2`` | ``GCC/4.8.2`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/fineRADstructure.md b/docs/version-specific/supported-software/f/fineRADstructure.md index 2644bd1d51..976555fbbf 100644 --- a/docs/version-specific/supported-software/f/fineRADstructure.md +++ b/docs/version-specific/supported-software/f/fineRADstructure.md @@ -10,7 +10,6 @@ A package for population structure inference from RAD-seq data version | toolchain --------|---------- -``20180709`` | ``intel/2018a`` ``20210514`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/f/fineSTRUCTURE.md b/docs/version-specific/supported-software/f/fineSTRUCTURE.md deleted file mode 100644 index 28910a16af..0000000000 --- a/docs/version-specific/supported-software/f/fineSTRUCTURE.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# fineSTRUCTURE - -fineSTRUCTURE is a fast and powerful algorithm for identifying population structure using dense sequencing data. - -*homepage*: - -version | toolchain ---------|---------- -``2.1.3`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/fixesproto.md b/docs/version-specific/supported-software/f/fixesproto.md deleted file mode 100644 index a1f52af038..0000000000 --- a/docs/version-specific/supported-software/f/fixesproto.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# fixesproto - -X.org FixesProto protocol headers. - -*homepage*: - -version | toolchain ---------|---------- -``5.0`` | ``foss/2016a`` -``5.0`` | ``gimkl/2.11.5`` -``5.0`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/flatbuffers-python.md b/docs/version-specific/supported-software/f/flatbuffers-python.md index 9e17e40a92..16f84671bc 100644 --- a/docs/version-specific/supported-software/f/flatbuffers-python.md +++ b/docs/version-specific/supported-software/f/flatbuffers-python.md @@ -8,16 +8,15 @@ Python Flatbuffers runtime library. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.12`` | | ``GCCcore/10.2.0`` -``1.12`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``2.0`` | | ``GCCcore/10.3.0`` -``2.0`` | | ``GCCcore/11.2.0`` -``2.0`` | | ``GCCcore/11.3.0`` -``23.1.4`` | | ``GCCcore/12.2.0`` -``23.5.26`` | | ``GCCcore/12.3.0`` -``24.3.25`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``1.12`` | ``GCCcore/10.2.0`` +``2.0`` | ``GCCcore/10.3.0`` +``2.0`` | ``GCCcore/11.2.0`` +``2.0`` | ``GCCcore/11.3.0`` +``23.1.4`` | ``GCCcore/12.2.0`` +``23.5.26`` | ``GCCcore/12.3.0`` +``24.3.25`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/flatbuffers.md b/docs/version-specific/supported-software/f/flatbuffers.md index 27d8e6095f..a2efd65a2d 100644 --- a/docs/version-specific/supported-software/f/flatbuffers.md +++ b/docs/version-specific/supported-software/f/flatbuffers.md @@ -11,8 +11,6 @@ FlatBuffers: Memory Efficient Serialization Library version | toolchain --------|---------- ``1.12.0`` | ``GCCcore/10.2.0`` -``1.12.0`` | ``GCCcore/8.3.0`` -``1.12.0`` | ``GCCcore/9.3.0`` ``2.0.0`` | ``GCCcore/10.3.0`` ``2.0.0`` | ``GCCcore/11.2.0`` ``2.0.0`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/f/flex.md b/docs/version-specific/supported-software/f/flex.md index 1081edcd02..76bf0dd3be 100644 --- a/docs/version-specific/supported-software/f/flex.md +++ b/docs/version-specific/supported-software/f/flex.md @@ -4,55 +4,12 @@ search: --- # flex -Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text. +Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text. *homepage*: version | toolchain --------|---------- -``2.5.35`` | ``system`` -``2.5.38`` | ``GCC/4.8.2`` -``2.5.39`` | ``GCC/4.9.2-binutils-2.25`` -``2.5.39`` | ``GCC/4.9.2`` -``2.5.39`` | ``GCC/4.9.3-binutils-2.25`` -``2.5.39`` | ``GCC/4.9.3`` -``2.5.39`` | ``GCC/5.1.0-binutils-2.25`` -``2.5.39`` | ``GCCcore/4.9.2`` -``2.5.39`` | ``GCCcore/4.9.3`` -``2.5.39`` | ``GCCcore/6.3.0`` -``2.5.39`` | ``GCCcore/6.4.0`` -``2.5.39`` | ``GCCcore/7.3.0`` -``2.5.39`` | ``GCCcore/8.2.0`` -``2.5.39`` | ``GCCcore/8.3.0`` -``2.5.39`` | ``GNU/4.9.3-2.25`` -``2.5.39`` | ``foss/2016a`` -``2.5.39`` | ``gimkl/2.11.5`` -``2.5.39`` | ``intel/2016.02-GCC-4.9`` -``2.5.39`` | ``intel/2016a`` -``2.5.39`` | ``intel/2016b`` -``2.5.39`` | ``system`` -``2.6.0`` | ``GCC/4.9.2`` -``2.6.0`` | ``GCCcore/4.9.3`` -``2.6.0`` | ``GCCcore/4.9.4`` -``2.6.0`` | ``GCCcore/5.3.0`` -``2.6.0`` | ``GCCcore/5.4.0`` -``2.6.0`` | ``GCCcore/6.1.0`` -``2.6.0`` | ``GCCcore/6.2.0`` -``2.6.0`` | ``foss/2016a`` -``2.6.0`` | ``foss/2016b`` -``2.6.0`` | ``gimkl/2.11.5`` -``2.6.0`` | ``intel/2016a`` -``2.6.0`` | ``intel/2016b`` -``2.6.0`` | ``iomkl/2016.07`` -``2.6.0`` | ``iomkl/2016.09-GCC-4.9.3-2.25`` -``2.6.0`` | ``system`` -``2.6.2`` | ``intel/2016b`` -``2.6.3`` | ``GCCcore/5.4.0`` -``2.6.3`` | ``GCCcore/6.3.0`` -``2.6.3`` | ``GCCcore/7.1.0`` -``2.6.3`` | ``gimkl/2017a`` -``2.6.3`` | ``system`` -``2.6.4`` | ``GCCcore/10.1.0`` ``2.6.4`` | ``GCCcore/10.2.0`` ``2.6.4`` | ``GCCcore/10.3.0`` ``2.6.4`` | ``GCCcore/11.1.0`` @@ -67,22 +24,6 @@ version | toolchain ``2.6.4`` | ``GCCcore/13.3.0`` ``2.6.4`` | ``GCCcore/14.1.0`` ``2.6.4`` | ``GCCcore/14.2.0`` -``2.6.4`` | ``GCCcore/5.5.0`` -``2.6.4`` | ``GCCcore/6.3.0`` -``2.6.4`` | ``GCCcore/6.4.0`` -``2.6.4`` | ``GCCcore/7.2.0`` -``2.6.4`` | ``GCCcore/7.3.0`` -``2.6.4`` | ``GCCcore/7.4.0`` -``2.6.4`` | ``GCCcore/8.1.0`` -``2.6.4`` | ``GCCcore/8.2.0`` -``2.6.4`` | ``GCCcore/8.3.0`` -``2.6.4`` | ``GCCcore/8.4.0`` -``2.6.4`` | ``GCCcore/9.1.0`` -``2.6.4`` | ``GCCcore/9.2.0`` -``2.6.4`` | ``GCCcore/9.3.0`` -``2.6.4`` | ``GCCcore/9.4.0`` -``2.6.4`` | ``GCCcore/9.5.0`` -``2.6.4`` | ``GCCcore/system`` ``2.6.4`` | ``system`` diff --git a/docs/version-specific/supported-software/f/flook.md b/docs/version-specific/supported-software/f/flook.md index 4de2090858..09cafe692f 100644 --- a/docs/version-specific/supported-software/f/flook.md +++ b/docs/version-specific/supported-software/f/flook.md @@ -17,6 +17,7 @@ version | toolchain ``0.8.1`` | ``iccifort/2020.4.304`` ``0.8.1`` | ``intel-compilers/2021.2.0`` ``0.8.1`` | ``intel-compilers/2021.4.0`` +``0.8.4`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/fmt.md b/docs/version-specific/supported-software/f/fmt.md index 0b629950bd..4f76fac4a5 100644 --- a/docs/version-specific/supported-software/f/fmt.md +++ b/docs/version-specific/supported-software/f/fmt.md @@ -14,14 +14,7 @@ version | toolchain ``10.1.0`` | ``GCCcore/12.3.0`` ``10.2.0`` | ``GCCcore/13.2.0`` ``10.2.1`` | ``GCCcore/13.2.0`` -``3.0.1`` | ``foss/2016b`` -``3.0.1`` | ``intel/2016b`` -``3.0.2`` | ``GCCcore/6.4.0`` -``3.0.2`` | ``intel/2017a`` -``5.3.0`` | ``GCCcore/7.3.0`` -``5.3.0`` | ``GCCcore/8.2.0`` -``6.2.1`` | ``GCCcore/9.3.0`` -``7.0.3`` | ``GCCcore/9.3.0`` +``11.0.2`` | ``GCCcore/13.3.0`` ``7.1.1`` | ``GCCcore/11.2.0`` ``8.1.1`` | ``GCCcore/11.2.0`` ``9.1.0`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/f/fontconfig.md b/docs/version-specific/supported-software/f/fontconfig.md index b9a7f2ec8a..f3141cb0d9 100644 --- a/docs/version-specific/supported-software/f/fontconfig.md +++ b/docs/version-specific/supported-software/f/fontconfig.md @@ -4,37 +4,20 @@ search: --- # fontconfig -Fontconfig is a library designed to provide system-wide font configuration, customization and application access. +Fontconfig is a library designed to provide system-wide font configuration, customization and application access. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.11.94`` | | ``foss/2016a`` -``2.11.94`` | | ``intel/2016a`` -``2.11.95`` | | ``foss/2016a`` -``2.11.95`` | | ``intel/2016a`` -``2.12.1`` | | ``GCCcore/5.4.0`` -``2.12.1`` | ``-libpng-1.6.29`` | ``GCCcore/6.3.0`` -``2.12.1`` | | ``GCCcore/6.3.0`` -``2.12.1`` | | ``foss/2016b`` -``2.12.1`` | | ``gimkl/2017a`` -``2.12.1`` | | ``intel/2016b`` -``2.12.4`` | | ``GCCcore/6.4.0`` -``2.12.6`` | | ``GCCcore/6.4.0`` -``2.13.0`` | | ``GCCcore/6.4.0`` -``2.13.0`` | | ``GCCcore/7.3.0`` -``2.13.1`` | | ``GCCcore/8.2.0`` -``2.13.1`` | | ``GCCcore/8.3.0`` -``2.13.92`` | | ``GCCcore/10.2.0`` -``2.13.92`` | | ``GCCcore/9.3.0`` -``2.13.93`` | | ``GCCcore/10.3.0`` -``2.13.94`` | | ``GCCcore/11.2.0`` -``2.14.0`` | | ``GCCcore/11.3.0`` -``2.14.1`` | | ``GCCcore/12.2.0`` -``2.14.2`` | | ``GCCcore/12.3.0`` -``2.14.2`` | | ``GCCcore/13.2.0`` -``2.15.0`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``2.13.92`` | ``GCCcore/10.2.0`` +``2.13.93`` | ``GCCcore/10.3.0`` +``2.13.94`` | ``GCCcore/11.2.0`` +``2.14.0`` | ``GCCcore/11.3.0`` +``2.14.1`` | ``GCCcore/12.2.0`` +``2.14.2`` | ``GCCcore/12.3.0`` +``2.14.2`` | ``GCCcore/13.2.0`` +``2.15.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/fontsproto.md b/docs/version-specific/supported-software/f/fontsproto.md deleted file mode 100644 index 8f174611cf..0000000000 --- a/docs/version-specific/supported-software/f/fontsproto.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# fontsproto - -X11 font extension wire protocol - -*homepage*: - -version | toolchain ---------|---------- -``2.1.3`` | ``foss/2016a`` -``2.1.3`` | ``gimkl/2.11.5`` -``2.1.3`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/foss.md b/docs/version-specific/supported-software/f/foss.md index 68dcbdeafd..4574b483c9 100644 --- a/docs/version-specific/supported-software/f/foss.md +++ b/docs/version-specific/supported-software/f/foss.md @@ -10,20 +10,6 @@ GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for M version | toolchain --------|---------- -``2016.04`` | ``system`` -``2016.06`` | ``system`` -``2016.07`` | ``system`` -``2016.09`` | ``system`` -``2016a`` | ``system`` -``2016b`` | ``system`` -``2017a`` | ``system`` -``2017b`` | ``system`` -``2018.08`` | ``system`` -``2018a`` | ``system`` -``2018b`` | ``system`` -``2019a`` | ``system`` -``2019b`` | ``system`` -``2020a`` | ``system`` ``2020b`` | ``system`` ``2021a`` | ``system`` ``2021b`` | ``system`` diff --git a/docs/version-specific/supported-software/f/fosscuda.md b/docs/version-specific/supported-software/f/fosscuda.md index 646d1c3369..050a4b688f 100644 --- a/docs/version-specific/supported-software/f/fosscuda.md +++ b/docs/version-specific/supported-software/f/fosscuda.md @@ -10,12 +10,6 @@ GCC based compiler toolchain __with CUDA support__, and including OpenMPI for M version | toolchain --------|---------- -``2017b`` | ``system`` -``2018a`` | ``system`` -``2018b`` | ``system`` -``2019a`` | ``system`` -``2019b`` | ``system`` -``2020a`` | ``system`` ``2020b`` | ``system`` diff --git a/docs/version-specific/supported-software/f/fplll.md b/docs/version-specific/supported-software/f/fplll.md index 853b219004..84b90406f0 100644 --- a/docs/version-specific/supported-software/f/fplll.md +++ b/docs/version-specific/supported-software/f/fplll.md @@ -4,7 +4,7 @@ search: --- # fplll -fplll contains implementations of several lattice algorithms. The implementation relies on floating-point orthogonalization, and the 1982 paper from Lenstra, Lenstra Jr. and Lovasz (LLL) is central to the code, hence the name. +fplll contains implementations of several lattice algorithms. The implementation relies on floating-point orthogonalization, and the 1982 paper from Lenstra, Lenstra Jr. and Lovasz (LLL) is central to the code, hence the name. *homepage*: diff --git a/docs/version-specific/supported-software/f/fpocket.md b/docs/version-specific/supported-software/f/fpocket.md deleted file mode 100644 index f396b9d19e..0000000000 --- a/docs/version-specific/supported-software/f/fpocket.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# fpocket - -The fpocket suite of programs is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and extract pocket descriptors on a large scale level. - -*homepage*: - -version | toolchain ---------|---------- -``3.1.4.2`` | ``gompi/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/fqtrim.md b/docs/version-specific/supported-software/f/fqtrim.md deleted file mode 100644 index 66b87e0f78..0000000000 --- a/docs/version-specific/supported-software/f/fqtrim.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# fqtrim - -fqtrim is a versatile stand-alone utility that can be used to trim adapters, poly-A tails, terminal unknown bases (Ns) and low quality 3' regions in reads from high-throughput next-generation sequencing machines. - -*homepage*: - -version | toolchain ---------|---------- -``0.9.4`` | ``intel/2016b`` -``0.9.5`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/fqzcomp.md b/docs/version-specific/supported-software/f/fqzcomp.md deleted file mode 100644 index 19068bd334..0000000000 --- a/docs/version-specific/supported-software/f/fqzcomp.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# fqzcomp - -Fqzcomp is a basic fastq compressor, designed primarily for high performance. Despite that it is comparable to bzip2 for compression levels. - -*homepage*: - -version | toolchain ---------|---------- -``4.6`` | ``GCC/4.8.2`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/freebayes.md b/docs/version-specific/supported-software/f/freebayes.md index 457796c180..9bddd94602 100644 --- a/docs/version-specific/supported-software/f/freebayes.md +++ b/docs/version-specific/supported-software/f/freebayes.md @@ -11,7 +11,6 @@ Bayesian haplotype-based genetic polymorphism discovery and genotyping. version | versionsuffix | toolchain --------|---------------|---------- ``1.3.5`` | | ``GCC/10.2.0`` -``1.3.5`` | ``-Python-3.8.2`` | ``GCC/9.3.0`` ``1.3.6`` | ``-R-4.1.0`` | ``foss/2021a`` ``1.3.6`` | ``-R-4.1.2`` | ``foss/2021b`` ``1.3.7`` | ``-R-4.3.2`` | ``gfbf/2023a`` diff --git a/docs/version-specific/supported-software/f/freeglut.md b/docs/version-specific/supported-software/f/freeglut.md index 9126af39b0..c941d78c71 100644 --- a/docs/version-specific/supported-software/f/freeglut.md +++ b/docs/version-specific/supported-software/f/freeglut.md @@ -8,29 +8,15 @@ freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit ( *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0.0`` | | ``GCCcore/8.2.0`` -``3.0.0`` | ``-Mesa-11.2.1`` | ``foss/2016a`` -``3.0.0`` | | ``foss/2016a`` -``3.0.0`` | | ``foss/2016b`` -``3.0.0`` | | ``foss/2017b`` -``3.0.0`` | | ``foss/2018a`` -``3.0.0`` | | ``foss/2018b`` -``3.0.0`` | ``-Mesa-11.2.1`` | ``intel/2016a`` -``3.0.0`` | | ``intel/2016a`` -``3.0.0`` | | ``intel/2016b`` -``3.0.0`` | | ``intel/2017a`` -``3.0.0`` | | ``intel/2017b`` -``3.0.0`` | | ``intel/2018a`` -``3.2.1`` | | ``GCCcore/10.2.0`` -``3.2.1`` | | ``GCCcore/10.3.0`` -``3.2.1`` | | ``GCCcore/11.2.0`` -``3.2.1`` | | ``GCCcore/8.3.0`` -``3.2.1`` | | ``GCCcore/9.3.0`` -``3.2.2`` | | ``GCCcore/11.3.0`` -``3.4.0`` | | ``GCCcore/12.2.0`` -``3.4.0`` | | ``GCCcore/12.3.0`` +version | toolchain +--------|---------- +``3.2.1`` | ``GCCcore/10.2.0`` +``3.2.1`` | ``GCCcore/10.3.0`` +``3.2.1`` | ``GCCcore/11.2.0`` +``3.2.2`` | ``GCCcore/11.3.0`` +``3.4.0`` | ``GCCcore/12.2.0`` +``3.4.0`` | ``GCCcore/12.3.0`` +``3.6.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/freetype-py.md b/docs/version-specific/supported-software/f/freetype-py.md index f43adffe4b..5a4a0b761f 100644 --- a/docs/version-specific/supported-software/f/freetype-py.md +++ b/docs/version-specific/supported-software/f/freetype-py.md @@ -8,10 +8,9 @@ Python binding for the freetype library *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.2.0`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``2.4.0`` | | ``GCCcore/11.3.0`` +version | toolchain +--------|---------- +``2.4.0`` | ``GCCcore/11.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/freetype.md b/docs/version-specific/supported-software/f/freetype.md index fbb4799f30..0663aaff32 100644 --- a/docs/version-specific/supported-software/f/freetype.md +++ b/docs/version-specific/supported-software/f/freetype.md @@ -8,39 +8,16 @@ FreeType 2 is a software font engine that is designed to be small, efficient, h *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.10.1`` | | ``GCCcore/8.3.0`` -``2.10.1`` | | ``GCCcore/9.3.0`` -``2.10.3`` | | ``GCCcore/10.2.0`` -``2.10.4`` | | ``GCCcore/10.3.0`` -``2.11.0`` | | ``GCCcore/11.2.0`` -``2.12.1`` | | ``GCCcore/11.3.0`` -``2.12.1`` | | ``GCCcore/12.2.0`` -``2.13.0`` | | ``GCCcore/12.3.0`` -``2.13.2`` | | ``GCCcore/13.2.0`` -``2.13.2`` | | ``GCCcore/13.3.0`` -``2.6.2`` | | ``foss/2016a`` -``2.6.2`` | | ``gimkl/2.11.5`` -``2.6.2`` | | ``intel/2016a`` -``2.6.3`` | | ``foss/2016a`` -``2.6.3`` | | ``intel/2016a`` -``2.6.5`` | | ``GCCcore/4.9.3`` -``2.6.5`` | | ``GCCcore/5.4.0`` -``2.6.5`` | | ``foss/2016b`` -``2.6.5`` | | ``intel/2016b`` -``2.7`` | | ``foss/2016b`` -``2.7`` | | ``intel/2016b`` -``2.7.1`` | | ``GCCcore/5.4.0`` -``2.7.1`` | ``-libpng-1.6.29`` | ``GCCcore/6.3.0`` -``2.7.1`` | | ``GCCcore/6.3.0`` -``2.7.1`` | | ``gimkl/2017a`` -``2.7.1`` | | ``intel/2016b`` -``2.8`` | | ``GCCcore/6.4.0`` -``2.8.1`` | | ``GCCcore/6.4.0`` -``2.9`` | | ``GCCcore/6.4.0`` -``2.9.1`` | | ``GCCcore/7.3.0`` -``2.9.1`` | | ``GCCcore/8.2.0`` +version | toolchain +--------|---------- +``2.10.3`` | ``GCCcore/10.2.0`` +``2.10.4`` | ``GCCcore/10.3.0`` +``2.11.0`` | ``GCCcore/11.2.0`` +``2.12.1`` | ``GCCcore/11.3.0`` +``2.12.1`` | ``GCCcore/12.2.0`` +``2.13.0`` | ``GCCcore/12.3.0`` +``2.13.2`` | ``GCCcore/13.2.0`` +``2.13.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/freud-analysis.md b/docs/version-specific/supported-software/f/freud-analysis.md index 70d3dbaa8c..0e79a61caf 100644 --- a/docs/version-specific/supported-software/f/freud-analysis.md +++ b/docs/version-specific/supported-software/f/freud-analysis.md @@ -11,6 +11,7 @@ The freud Python library provides a simple, flexible, powerful set of tools for version | toolchain --------|---------- ``2.6.2`` | ``foss/2020b`` +``2.6.2`` | ``foss/2021a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/fsm-lite.md b/docs/version-specific/supported-software/f/fsm-lite.md index bab286ca3e..0505059b47 100644 --- a/docs/version-specific/supported-software/f/fsm-lite.md +++ b/docs/version-specific/supported-software/f/fsm-lite.md @@ -11,6 +11,7 @@ A singe-core implemetation of frequency-based substring mining. version | toolchain --------|---------- ``1.0`` | ``GCCcore/12.2.0`` +``1.0`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/fsom.md b/docs/version-specific/supported-software/f/fsom.md index f1728ab36e..aaaba75718 100644 --- a/docs/version-specific/supported-software/f/fsom.md +++ b/docs/version-specific/supported-software/f/fsom.md @@ -13,7 +13,6 @@ version | toolchain ``20141119`` | ``GCCcore/10.2.0`` ``20141119`` | ``GCCcore/10.3.0`` ``20141119`` | ``GCCcore/11.2.0`` -``20141119`` | ``GCCcore/9.3.0`` ``20151117`` | ``GCCcore/11.3.0`` ``20151117`` | ``GCCcore/12.2.0`` ``20151117`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/f/fullrmc.md b/docs/version-specific/supported-software/f/fullrmc.md deleted file mode 100644 index 37f0b4f523..0000000000 --- a/docs/version-specific/supported-software/f/fullrmc.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# fullrmc - -Reverse Monte Carlo (RMC) is probably best known for its applications in condensed matter physics and solid state chemistry. fullrmc which stands for FUndamental Library Language for Reverse Monte Carlo is different than traditional RMC but a stochastic modelling method to solve an inverse problem whereby an atomic/molecular model is adjusted until its atoms position havei the greatest consistency with a set of experimental data. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.2.0`` | ``-Python-2.7.14`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/fumi_tools.md b/docs/version-specific/supported-software/f/fumi_tools.md index 9f5eae1009..5dd743a0b3 100644 --- a/docs/version-specific/supported-software/f/fumi_tools.md +++ b/docs/version-specific/supported-software/f/fumi_tools.md @@ -8,11 +8,10 @@ This tool is intended to deduplicate UMIs from single-end and paired-end sequen *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.18.2`` | | ``GCC/10.3.0`` -``0.18.2`` | | ``GCC/11.2.0`` -``0.18.2`` | ``-Python-3.6.6`` | ``foss/2018b`` +version | toolchain +--------|---------- +``0.18.2`` | ``GCC/10.3.0`` +``0.18.2`` | ``GCC/11.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/funannotate.md b/docs/version-specific/supported-software/f/funannotate.md index 6f4ea1ed8d..ef8877e427 100644 --- a/docs/version-specific/supported-software/f/funannotate.md +++ b/docs/version-specific/supported-software/f/funannotate.md @@ -11,6 +11,7 @@ funannotate is a pipeline for genome annotation (built specifically for fungi, b version | toolchain --------|---------- ``1.8.13`` | ``foss/2021b`` +``1.8.17`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/futhark.md b/docs/version-specific/supported-software/f/futhark.md index 4d28a57d23..b8a067f44a 100644 --- a/docs/version-specific/supported-software/f/futhark.md +++ b/docs/version-specific/supported-software/f/futhark.md @@ -4,7 +4,7 @@ search: --- # futhark -Futhark is a small programming language designed to be compiled to efficient parallel code. It is a statically typed, data-parallel, and purely functional array language in the ML family, and comes with a heavily optimising ahead-of-time compiler that presently generates GPU code via CUDA and OpenCL, although the language itself is hardware-agnostic and can also run on multicore CPUs +Futhark is a small programming language designed to be compiled to efficient parallel code. It is a statically typed, data-parallel, and purely functional array language in the ML family, and comes with a heavily optimising ahead-of-time compiler that presently generates GPU code via CUDA and OpenCL, although the language itself is hardware-agnostic and can also run on multicore CPUs *homepage*: diff --git a/docs/version-specific/supported-software/f/futile.md b/docs/version-specific/supported-software/f/futile.md index 588a95e8b7..27e4577808 100644 --- a/docs/version-specific/supported-software/f/futile.md +++ b/docs/version-specific/supported-software/f/futile.md @@ -4,7 +4,7 @@ search: --- # futile -The FUTILE project (Fortran Utilities for the Treatment of Innermost Level of Executables) is a set of modules and wrapper that encapsulate the most common low-level operations of a Fortran code. +The FUTILE project (Fortran Utilities for the Treatment of Innermost Level of Executables) is a set of modules and wrapper that encapsulate the most common low-level operations of a Fortran code. *homepage*: diff --git a/docs/version-specific/supported-software/f/future.md b/docs/version-specific/supported-software/f/future.md deleted file mode 100644 index bb5bab2479..0000000000 --- a/docs/version-specific/supported-software/f/future.md +++ /dev/null @@ -1,23 +0,0 @@ ---- -search: - boost: 0.5 ---- -# future - -python-future is the missing compatibility layer between Python 2 and Python 3. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.16.0`` | ``-Python-2.7.14`` | ``foss/2018a`` -``0.16.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``0.16.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.16.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``0.16.0`` | ``-Python-3.6.3`` | ``intel/2017b`` -``0.16.0`` | ``-Python-2.7.14`` | ``intel/2018a`` -``0.16.0`` | ``-Python-2.7.15`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/fxtract.md b/docs/version-specific/supported-software/f/fxtract.md deleted file mode 100644 index cdb993757e..0000000000 --- a/docs/version-specific/supported-software/f/fxtract.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# fxtract - -Extract sequences from a fastx (fasta or fastq) file given a subsequence. - -*homepage*: - -version | toolchain ---------|---------- -``2.3`` | ``GCCcore/8.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/index.md b/docs/version-specific/supported-software/f/index.md index 00fb6b77e0..3cdb81bdbd 100644 --- a/docs/version-specific/supported-software/f/index.md +++ b/docs/version-specific/supported-software/f/index.md @@ -8,96 +8,63 @@ search: - * [f90cache](f90cache.md) * [f90nml](f90nml.md) * [f90wrap](f90wrap.md) - * [Faber](Faber.md) * [FabIO](FabIO.md) * [FACE](FACE.md) - * [faceswap](faceswap.md) + * [face-recognition](face-recognition.md) * [Faiss](Faiss.md) - * [FALCON](FALCON.md) - * [FANN](FANN.md) - * [fast5](fast5.md) * [FASTA](FASTA.md) * [fasta-reader](fasta-reader.md) * [fastahack](fastahack.md) * [fastai](fastai.md) - * [FastaIndex](FastaIndex.md) * [FastANI](FastANI.md) * [Fastaq](Fastaq.md) * [fastfilters](fastfilters.md) * [FastFold](FastFold.md) * [fastjet](fastjet.md) * [fastjet-contrib](fastjet-contrib.md) + * [FastK](FastK.md) * [FastME](FastME.md) * [fastml](fastml.md) * [fastp](fastp.md) * [fastparquet](fastparquet.md) - * [fastPHASE](fastPHASE.md) - * [fastq-pair](fastq-pair.md) * [fastq-tools](fastq-tools.md) * [FastQ_Screen](FastQ_Screen.md) * [FastQC](FastQC.md) - * [fastqsplitter](fastqsplitter.md) * [FastQTL](FastQTL.md) - * [fastqz](fastqz.md) - * [FastRFS](FastRFS.md) - * [fastStructure](fastStructure.md) + * [fastText](fastText.md) * [FastTree](FastTree.md) - * [FastViromeExplorer](FastViromeExplorer.md) * [FASTX-Toolkit](FASTX-Toolkit.md) - * [fatslim](fatslim.md) - * [fbm](fbm.md) * [FBPIC](FBPIC.md) - * [FCM](FCM.md) * [fdict](fdict.md) * [FDMNES](FDMNES.md) * [FDS](FDS.md) - * [fdstools](fdstools.md) - * [FDTD_Solutions](FDTD_Solutions.md) * [feh](feh.md) - * [FEniCS](FEniCS.md) * [fermi-lite](fermi-lite.md) * [Ferret](Ferret.md) * [festival](festival.md) - * [fetchMG](fetchMG.md) * [FFAVES](FFAVES.md) - * [FFC](FFC.md) * [FFLAS-FFPACK](FFLAS-FFPACK.md) * [FFmpeg](FFmpeg.md) - * [ffnet](ffnet.md) * [ffnvcodec](ffnvcodec.md) * [fftlib](fftlib.md) * [FFTW](FFTW.md) * [FFTW.MPI](FFTW.MPI.md) * [fgbio](fgbio.md) - * [FGSL](FGSL.md) * [FHI-aims](FHI-aims.md) - * [FIAT](FIAT.md) * [FIGARO](FIGARO.md) - * [FigureGen](FigureGen.md) * [Fiji](Fiji.md) * [file](file.md) * [filevercmp](filevercmp.md) * [Filtlong](Filtlong.md) - * [find_circ](find_circ.md) * [finder](finder.md) - * [findhap](findhap.md) - * [findutils](findutils.md) * [fineRADstructure](fineRADstructure.md) - * [fineSTRUCTURE](fineSTRUCTURE.md) * [fio](fio.md) * [Fiona](Fiona.md) - * [Firefox](Firefox.md) * [FIRESTARTER](FIRESTARTER.md) - * [FireWorks](FireWorks.md) * [fish](fish.md) - * [FIt-SNE](FIt-SNE.md) - * [FIX](FIX.md) - * [fixesproto](fixesproto.md) * [FLAC](FLAC.md) - * [FLAIR](FLAIR.md) * [flair-NLP](flair-NLP.md) * [FLANN](FLANN.md) * [FLASH](FLASH.md) @@ -106,29 +73,23 @@ search: * [flatbuffers](flatbuffers.md) * [flatbuffers-python](flatbuffers-python.md) * [Flax](Flax.md) - * [FLEUR](FLEUR.md) * [flex](flex.md) - * [Flexbar](Flexbar.md) * [FlexiBLAS](FlexiBLAS.md) - * [FlexiDot](FlexiDot.md) * [Flink](Flink.md) * [FLINT](FLINT.md) * [flit](flit.md) * [flook](flook.md) + * [FloPy](FloPy.md) * [flowFDA](flowFDA.md) * [FLTK](FLTK.md) * [FLUENT](FLUENT.md) * [Flye](Flye.md) - * [FMILibrary](FMILibrary.md) * [FMM3D](FMM3D.md) * [FMPy](FMPy.md) - * [FMRIprep](FMRIprep.md) * [FMS](FMS.md) * [fmt](fmt.md) * [FoBiS](FoBiS.md) - * [FoldX](FoldX.md) * [fontconfig](fontconfig.md) - * [fontsproto](fontsproto.md) * [fonttools](fonttools.md) * [forbear](forbear.md) * [FORD](FORD.md) @@ -138,20 +99,13 @@ search: * [FOX-Toolkit](FOX-Toolkit.md) * [fplll](fplll.md) * [FPM](FPM.md) - * [fpocket](fpocket.md) * [fpylll](fpylll.md) - * [fqtrim](fqtrim.md) - * [fqzcomp](fqzcomp.md) * [FragGeneScan](FragGeneScan.md) * [FragPipe](FragPipe.md) - * [FRANz](FRANz.md) * [FreeBarcodes](FreeBarcodes.md) * [freebayes](freebayes.md) - * [FreeFEM](FreeFEM.md) - * [FreeFem++](FreeFem++.md) * [freeglut](freeglut.md) * [FreeImage](FreeImage.md) - * [FreeSASA](FreeSASA.md) * [FreeSurfer](FreeSurfer.md) * [FreeTDS](FreeTDS.md) * [freetype](freetype.md) @@ -159,28 +113,19 @@ search: * [FreeXL](FreeXL.md) * [freud-analysis](freud-analysis.md) * [FriBidi](FriBidi.md) - * [FRUIT](FRUIT.md) - * [FRUIT_processor](FRUIT_processor.md) * [FSL](FSL.md) - * [FSLeyes](FSLeyes.md) * [fsm-lite](fsm-lite.md) * [fsom](fsom.md) * [FSON](FSON.md) * [ftfy](ftfy.md) * [FTGL](FTGL.md) * [fugue](fugue.md) - * [fullrmc](fullrmc.md) * [fumi_tools](fumi_tools.md) * [funannotate](funannotate.md) * [FunGAP](FunGAP.md) - * [FUNWAVE-TVD](FUNWAVE-TVD.md) * [FUSE](FUSE.md) - * [FuSeq](FuSeq.md) - * [FusionCatcher](FusionCatcher.md) * [futhark](futhark.md) * [futile](futile.md) - * [future](future.md) - * [fxtract](fxtract.md) *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - *f* - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/G-PhoCS.md b/docs/version-specific/supported-software/g/G-PhoCS.md deleted file mode 100644 index 95c994a5e9..0000000000 --- a/docs/version-specific/supported-software/g/G-PhoCS.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# G-PhoCS - -G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual genome sequences. G-PhoCS accepts as input a set of multiple sequence alignments from separate neutrally evolving loci along the genome. Parameter inference is done in a Bayesian manner, using a Markov Chain Monte Carlo (MCMC) to jointly sample model parameters and genealogies at the input loci. - -*homepage*: - -version | toolchain ---------|---------- -``1.2.3`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GAMESS-US.md b/docs/version-specific/supported-software/g/GAMESS-US.md index d82f4b3d36..d3ab8b2ff6 100644 --- a/docs/version-specific/supported-software/g/GAMESS-US.md +++ b/docs/version-specific/supported-software/g/GAMESS-US.md @@ -4,20 +4,15 @@ search: --- # GAMESS-US -The General Atomic and Molecular Electronic Structure System (GAMESS) is a general ab initio quantum chemistry package. +The General Atomic and Molecular Electronic Structure System (GAMESS) is a general ab initio quantum chemistry package. This module can be used on a maximum of 1024 nodes and 1024 CPUs per node. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``20141205-R1`` | | ``intel/2016a`` -``20170420-R1`` | ``-sockets`` | ``intel/2016b`` -``20170420-R1`` | | ``intel/2016b`` -``20180214-R1`` | ``-sockets`` | ``foss/2016b`` -``20180214-R1`` | | ``foss/2016b`` -``20220930-R2`` | | ``gompi/2022a`` -``20230930-R2`` | | ``gompi/2022a`` -``20230930-R2`` | | ``intel-compilers/2022.1.0`` +version | toolchain +--------|---------- +``20220930-R2`` | ``gompi/2022a`` +``20230930-R2`` | ``gompi/2022a`` +``20230930-R2`` | ``intel-compilers/2022.1.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GARLI.md b/docs/version-specific/supported-software/g/GARLI.md deleted file mode 100644 index 540a0a888f..0000000000 --- a/docs/version-specific/supported-software/g/GARLI.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GARLI - -GARLI, Genetic Algorithm for Rapid Likelihood Inference is a program for inferring phylogenetic trees. Using an approach similar to a classical genetic algorithm, it rapidly searches the space of evolutionary trees and model parameters to find the solution maximizing the likelihood score. It implements nucleotide, amino acid and codon-based models of sequence evolution, and runs on all platforms. - -*homepage*: - -version | toolchain ---------|---------- -``2.01`` | ``gompi/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GAT.md b/docs/version-specific/supported-software/g/GAT.md deleted file mode 100644 index 486d077068..0000000000 --- a/docs/version-specific/supported-software/g/GAT.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GAT - -The Genomic Association Tester (GAT) is a tool for computing the significance of overlap between multiple sets of genomic intervals. GAT estimates significance based on simulation. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.2`` | ``-Python-2.7.11`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GATE.md b/docs/version-specific/supported-software/g/GATE.md index c20596d4cb..d96cd8ffa4 100644 --- a/docs/version-specific/supported-software/g/GATE.md +++ b/docs/version-specific/supported-software/g/GATE.md @@ -8,23 +8,12 @@ GATE is an advanced opensource software developed by the international OpenGATE *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``6.2`` | ``-Python-2.7.11`` | ``intel/2016a`` -``7.1`` | ``-Python-2.7.11`` | ``intel/2016a`` -``7.2`` | ``-Python-2.7.11`` | ``intel/2016a`` -``8.0`` | ``-Python-2.7.14`` | ``foss/2017b`` -``8.0`` | ``-Python-2.7.14-Geant4-10.04`` | ``intel/2017b`` -``8.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``8.1.p01`` | ``-Python-2.7.15`` | ``foss/2018b`` -``8.2`` | ``-Python-2.7.14`` | ``foss/2017b`` -``8.2`` | ``-Python-2.7.15`` | ``foss/2018b`` -``8.2`` | ``-Python-2.7.14`` | ``intel/2017b`` -``9.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``9.1`` | | ``foss/2021b`` -``9.2`` | | ``foss/2021b`` -``9.2`` | | ``foss/2022a`` -``9.4`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``9.1`` | ``foss/2021b`` +``9.2`` | ``foss/2021b`` +``9.2`` | ``foss/2022a`` +``9.4`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GATK.md b/docs/version-specific/supported-software/g/GATK.md index c64c57bdd8..bd8979eae7 100644 --- a/docs/version-specific/supported-software/g/GATK.md +++ b/docs/version-specific/supported-software/g/GATK.md @@ -4,45 +4,12 @@ search: --- # GATK -The GATK is a structured software library that makes writing efficient analysis tools using next-generation sequencing data very easy, and second it's a suite of tools for working with human medical resequencing projects such as 1000 Genomes and The Cancer Genome Atlas. These tools include things like a depth of coverage analyzers, a quality score recalibrator, a SNP/indel caller and a local realigner. +The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.0.5083`` | | ``system`` -``2.5-2`` | ``-Java-1.7.0_10`` | ``system`` -``2.6-5`` | ``-Java-1.7.0_10`` | ``system`` -``2.7-4`` | ``-Java-1.7.0_10`` | ``system`` -``2.7-4`` | | ``system`` -``2.8-1`` | ``-Java-1.7.0_10`` | ``system`` -``3.0-0`` | ``-Java-1.7.0_10`` | ``system`` -``3.3-0`` | ``-Java-1.7.0_21`` | ``system`` -``3.3-0`` | ``-Java-1.7.0_80`` | ``system`` -``3.3-0`` | ``-Java-1.8.0_66`` | ``system`` -``3.5`` | ``-Java-1.8.0_66`` | ``system`` -``3.5`` | ``-Java-1.8.0_74`` | ``system`` -``3.6`` | ``-Java-1.8.0_92`` | ``system`` -``3.7`` | ``-Java-1.8.0_112`` | ``system`` -``3.8-0`` | ``-Java-1.8.0_144`` | ``system`` -``4.0.1.2`` | ``-Java-1.8`` | ``system`` -``4.0.10.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``4.0.12.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``4.0.4.0`` | ``-Python-2.7.14`` | ``intel/2018a`` -``4.0.4.0`` | ``-Python-3.6.4`` | ``intel/2018a`` -``4.0.5.1`` | ``-Python-3.6.4`` | ``foss/2018a`` -``4.0.7.0`` | ``-Python-2.7.14`` | ``intel/2018a`` -``4.0.7.0`` | ``-Python-3.6.4`` | ``intel/2018a`` -``4.0.8.1`` | ``-Python-2.7.15`` | ``foss/2018b`` -``4.0.8.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``4.1.0.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``4.1.2.0`` | ``-Java-1.8`` | ``GCCcore/8.2.0`` -``4.1.3.0`` | ``-Java-1.8`` | ``GCCcore/8.3.0`` -``4.1.4.1`` | ``-Java-1.8`` | ``GCCcore/8.3.0`` -``4.1.4.1`` | ``-Java-11`` | ``GCCcore/8.3.0`` -``4.1.5.0`` | ``-Java-1.8`` | ``GCCcore/9.3.0`` -``4.1.5.0`` | ``-Java-11`` | ``GCCcore/9.3.0`` -``4.1.8.1`` | ``-Java-1.8`` | ``GCCcore/9.3.0`` ``4.2.0.0`` | ``-Java-1.8`` | ``GCCcore/10.2.0`` ``4.2.0.0`` | ``-Java-11`` | ``GCCcore/10.2.0`` ``4.2.3.0`` | ``-Java-11`` | ``GCCcore/11.2.0`` @@ -50,9 +17,11 @@ version | versionsuffix | toolchain ``4.2.6.1`` | ``-Java-11`` | ``GCCcore/10.3.0`` ``4.2.6.1`` | ``-Java-11`` | ``GCCcore/11.2.0`` ``4.3.0.0`` | ``-Java-11`` | ``GCCcore/11.3.0`` +``4.3.0.0`` | ``-Java-11`` | ``GCCcore/12.3.0`` ``4.4.0.0`` | ``-Java-17`` | ``GCCcore/12.2.0`` ``4.4.0.0`` | ``-Java-17`` | ``GCCcore/12.3.0`` ``4.5.0.0`` | ``-Java-17`` | ``GCCcore/12.3.0`` +``4.6.0.0`` | ``-Java-17`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GBprocesS.md b/docs/version-specific/supported-software/g/GBprocesS.md index c89a6206ac..ea637e0960 100644 --- a/docs/version-specific/supported-software/g/GBprocesS.md +++ b/docs/version-specific/supported-software/g/GBprocesS.md @@ -8,10 +8,9 @@ GBprocesS allows for the extraction of genomic inserts from NGS data for GBS exp *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.3`` | ``-Python-3.8.2`` | ``intel/2020a`` -``4.0.0.post1`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``4.0.0.post1`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GC3Pie.md b/docs/version-specific/supported-software/g/GC3Pie.md deleted file mode 100644 index c8ea60aa8a..0000000000 --- a/docs/version-specific/supported-software/g/GC3Pie.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GC3Pie - -GC3Pie is a Python package for running large job campaigns on diverse batch-oriented execution environments. - -*homepage*: - -version | toolchain ---------|---------- -``2.4.2`` | ``system`` -``2.5.0`` | ``system`` -``2.5.2`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GCC.md b/docs/version-specific/supported-software/g/GCC.md index c5a2ee41a2..28f657122b 100644 --- a/docs/version-specific/supported-software/g/GCC.md +++ b/docs/version-specific/supported-software/g/GCC.md @@ -8,78 +8,23 @@ The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``10.1.0`` | | ``system`` -``10.2.0`` | | ``system`` -``10.3.0`` | | ``system`` -``11.1.0`` | | ``system`` -``11.2.0`` | | ``system`` -``11.3.0`` | | ``system`` -``11.4.0`` | | ``system`` -``12.1.0`` | | ``system`` -``12.2.0`` | | ``system`` -``12.3.0`` | | ``system`` -``13.1.0`` | | ``system`` -``13.2.0`` | | ``system`` -``13.3.0`` | | ``system`` -``14.1.0`` | | ``system`` -``14.2.0`` | | ``system`` -``4.8.1`` | ``-CLooG`` | ``system`` -``4.8.1`` | | ``system`` -``4.8.2`` | ``-CLooG-multilib`` | ``system`` -``4.8.2`` | ``-CLooG`` | ``system`` -``4.8.2`` | ``-multilib`` | ``system`` -``4.8.2`` | | ``system`` -``4.8.3`` | ``-CLooG-multilib`` | ``system`` -``4.8.3`` | | ``system`` -``4.8.4`` | ``-CLooG-multilib`` | ``system`` -``4.8.4`` | ``-CLooG`` | ``system`` -``4.8.4`` | | ``system`` -``4.8.5`` | | ``system`` -``4.9.0`` | ``-CLooG-multilib`` | ``system`` -``4.9.0`` | ``-CLooG`` | ``system`` -``4.9.0`` | | ``system`` -``4.9.1`` | ``-CLooG-multilib`` | ``system`` -``4.9.1`` | ``-CLooG`` | ``system`` -``4.9.1`` | | ``system`` -``4.9.2`` | ``-CLooG-multilib`` | ``system`` -``4.9.2`` | ``-CLooG`` | ``system`` -``4.9.2`` | ``-binutils-2.25`` | ``system`` -``4.9.2`` | | ``system`` -``4.9.3`` | ``-2.25`` | ``system`` -``4.9.3`` | ``-binutils-2.25`` | ``system`` -``4.9.3`` | | ``system`` -``4.9.4`` | ``-2.25`` | ``system`` -``5.1.0`` | ``-binutils-2.25`` | ``system`` -``5.1.0`` | | ``system`` -``5.2.0`` | | ``system`` -``5.3.0`` | ``-2.26`` | ``system`` -``5.3.0`` | | ``system`` -``5.4.0`` | ``-2.26`` | ``system`` -``5.5.0`` | ``-2.26`` | ``system`` -``6.1.0`` | ``-2.27`` | ``system`` -``6.2.0`` | ``-2.27`` | ``system`` -``6.3.0`` | ``-2.27`` | ``system`` -``6.3.0`` | ``-2.28`` | ``system`` -``6.4.0`` | ``-2.28`` | ``system`` -``7.1.0`` | ``-2.28`` | ``system`` -``7.2.0`` | ``-2.29`` | ``system`` -``7.3.0`` | ``-2.30`` | ``system`` -``7.4.0`` | ``-2.31.1`` | ``system`` -``8.1.0`` | ``-2.30`` | ``system`` -``8.2.0`` | ``-2.31.1`` | ``system`` -``8.3.0`` | ``-2.32`` | ``system`` -``8.3.0`` | | ``system`` -``8.4.0`` | | ``system`` -``9.1.0`` | ``-2.32`` | ``system`` -``9.2.0`` | ``-2.32`` | ``system`` -``9.2.0`` | | ``system`` -``9.3.0`` | | ``system`` -``9.4.0`` | | ``system`` -``9.5.0`` | | ``system`` -``system`` | ``-2.29`` | ``system`` -``system`` | | ``system`` +version | toolchain +--------|---------- +``10.2.0`` | ``system`` +``10.3.0`` | ``system`` +``11.1.0`` | ``system`` +``11.2.0`` | ``system`` +``11.3.0`` | ``system`` +``11.4.0`` | ``system`` +``12.1.0`` | ``system`` +``12.2.0`` | ``system`` +``12.3.0`` | ``system`` +``13.1.0`` | ``system`` +``13.2.0`` | ``system`` +``13.3.0`` | ``system`` +``14.1.0`` | ``system`` +``14.2.0`` | ``system`` +``system`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GCCcore.md b/docs/version-specific/supported-software/g/GCCcore.md index 783e35ce06..4dc4429dc5 100644 --- a/docs/version-specific/supported-software/g/GCCcore.md +++ b/docs/version-specific/supported-software/g/GCCcore.md @@ -10,7 +10,6 @@ The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran version | toolchain --------|---------- -``10.1.0`` | ``system`` ``10.2.0`` | ``system`` ``10.3.0`` | ``system`` ``11.1.0`` | ``system`` @@ -25,30 +24,6 @@ version | toolchain ``13.3.0`` | ``system`` ``14.1.0`` | ``system`` ``14.2.0`` | ``system`` -``4.9.2`` | ``system`` -``4.9.3`` | ``system`` -``4.9.4`` | ``system`` -``5.3.0`` | ``system`` -``5.4.0`` | ``system`` -``5.5.0`` | ``system`` -``6.1.0`` | ``system`` -``6.2.0`` | ``system`` -``6.3.0`` | ``system`` -``6.4.0`` | ``system`` -``6.5.0`` | ``system`` -``7.1.0`` | ``system`` -``7.2.0`` | ``system`` -``7.3.0`` | ``system`` -``7.4.0`` | ``system`` -``8.1.0`` | ``system`` -``8.2.0`` | ``system`` -``8.3.0`` | ``system`` -``8.4.0`` | ``system`` -``9.1.0`` | ``system`` -``9.2.0`` | ``system`` -``9.3.0`` | ``system`` -``9.4.0`` | ``system`` -``9.5.0`` | ``system`` ``system`` | ``system`` diff --git a/docs/version-specific/supported-software/g/GConf.md b/docs/version-specific/supported-software/g/GConf.md index db42176428..9845953ec6 100644 --- a/docs/version-specific/supported-software/g/GConf.md +++ b/docs/version-specific/supported-software/g/GConf.md @@ -13,14 +13,7 @@ version | toolchain ``3.2.6`` | ``GCCcore/10.3.0`` ``3.2.6`` | ``GCCcore/11.2.0`` ``3.2.6`` | ``GCCcore/11.3.0`` -``3.2.6`` | ``GCCcore/8.2.0`` -``3.2.6`` | ``GCCcore/8.3.0`` -``3.2.6`` | ``foss/2016a`` -``3.2.6`` | ``foss/2018b`` -``3.2.6`` | ``intel/2016a`` -``3.2.6`` | ``intel/2016b`` -``3.2.6`` | ``intel/2017a`` -``3.2.6`` | ``intel/2017b`` +``3.2.6`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GD.md b/docs/version-specific/supported-software/g/GD.md index 1368220305..199f6881b8 100644 --- a/docs/version-specific/supported-software/g/GD.md +++ b/docs/version-specific/supported-software/g/GD.md @@ -8,14 +8,10 @@ GD.pm - Interface to Gd Graphics Library *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.66`` | ``-Perl-5.24.0`` | ``foss/2016b`` -``2.68`` | ``-Perl-5.26.1`` | ``GCCcore/6.4.0`` -``2.69`` | ``-Perl-5.28.0`` | ``GCCcore/7.3.0`` -``2.71`` | | ``GCCcore/9.3.0`` -``2.73`` | | ``GCCcore/10.3.0`` -``2.75`` | | ``GCCcore/11.3.0`` +version | toolchain +--------|---------- +``2.73`` | ``GCCcore/10.3.0`` +``2.75`` | ``GCCcore/11.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GDAL.md b/docs/version-specific/supported-software/g/GDAL.md index b94fae3d7c..72ec4b2025 100644 --- a/docs/version-specific/supported-software/g/GDAL.md +++ b/docs/version-specific/supported-software/g/GDAL.md @@ -6,58 +6,22 @@ search: GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0.2`` | | ``foss/2016a`` -``2.0.2`` | | ``intel/2016a`` -``2.1.0`` | | ``foss/2016a`` -``2.1.0`` | | ``foss/2016b`` -``2.1.0`` | | ``intel/2016b`` -``2.1.1`` | | ``foss/2016a`` -``2.1.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``2.1.2`` | ``-Python-2.7.12`` | ``intel/2016b`` -``2.1.3`` | ``-Python-2.7.12`` | ``foss/2016b`` -``2.1.3`` | ``-Python-2.7.12`` | ``intel/2016b`` -``2.1.3`` | ``-Python-2.7.13`` | ``intel/2017a`` -``2.1.3`` | ``-Python-3.6.1`` | ``intel/2017a`` -``2.2.0`` | ``-Python-2.7.13-HDF5-1.8.18`` | ``intel/2017a`` -``2.2.0`` | ``-Python-2.7.13-HDF5-HDF`` | ``intel/2017a`` -``2.2.0`` | ``-Python-3.6.1`` | ``intel/2017a`` -``2.2.2`` | ``-Python-2.7.14-HDF5-1.8.19`` | ``intel/2017b`` -``2.2.2`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.2.3`` | ``-Python-2.7.14`` | ``foss/2017b`` -``2.2.3`` | ``-Python-3.6.3`` | ``foss/2017b`` -``2.2.3`` | ``-Python-2.7.14`` | ``foss/2018a`` -``2.2.3`` | ``-Python-3.6.4`` | ``foss/2018a`` -``2.2.3`` | ``-Python-2.7.15`` | ``foss/2018b`` -``2.2.3`` | ``-Python-3.6.6`` | ``foss/2018b`` -``2.2.3`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.2.3`` | ``-Python-2.7.14`` | ``intel/2018a`` -``2.2.3`` | ``-Python-3.6.4`` | ``intel/2018a`` -``2.2.3`` | ``-Python-3.6.6`` | ``intel/2018b`` -``2.2.3`` | ``-Python-3.6.4`` | ``iomkl/2018a`` -``2.4.4`` | | ``foss/2021b`` -``2.4.4`` | | ``intel/2021b`` -``3.0.0`` | ``-Python-2.7.15`` | ``foss/2019a`` -``3.0.0`` | ``-Python-3.7.2`` | ``foss/2019a`` -``3.0.0`` | ``-Python-2.7.15`` | ``intel/2019a`` -``3.0.0`` | ``-Python-3.7.2`` | ``intel/2019a`` -``3.0.2`` | ``-Python-3.7.4`` | ``foss/2019b`` -``3.0.2`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``3.0.2`` | ``-Python-3.7.4`` | ``intel/2019b`` -``3.0.4`` | ``-Python-3.8.2`` | ``foss/2020a`` -``3.0.4`` | ``-Python-3.8.2`` | ``intel/2020a`` -``3.2.1`` | | ``foss/2020b`` -``3.2.1`` | | ``fosscuda/2020b`` -``3.2.1`` | | ``intel/2020b`` -``3.3.0`` | | ``foss/2021a`` -``3.3.2`` | | ``foss/2021b`` -``3.5.0`` | | ``foss/2022a`` -``3.6.2`` | | ``foss/2022b`` -``3.7.1`` | | ``foss/2023a`` -``3.9.0`` | | ``foss/2023b`` +version | toolchain +--------|---------- +``2.4.4`` | ``foss/2021b`` +``2.4.4`` | ``intel/2021b`` +``3.10.0`` | ``foss/2024a`` +``3.2.1`` | ``foss/2020b`` +``3.2.1`` | ``fosscuda/2020b`` +``3.2.1`` | ``intel/2020b`` +``3.3.0`` | ``foss/2021a`` +``3.3.2`` | ``foss/2021b`` +``3.5.0`` | ``foss/2022a`` +``3.6.2`` | ``foss/2022b`` +``3.7.1`` | ``foss/2023a`` +``3.9.0`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GDB.md b/docs/version-specific/supported-software/g/GDB.md index 625a8e761c..7fa6b4d722 100644 --- a/docs/version-specific/supported-software/g/GDB.md +++ b/docs/version-specific/supported-software/g/GDB.md @@ -8,31 +8,16 @@ The GNU Project Debugger *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``10.1`` | | ``GCCcore/10.2.0`` -``10.2`` | | ``GCCcore/10.3.0`` -``10.2`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` -``11.1`` | | ``GCCcore/11.2.0`` -``12.1`` | | ``GCCcore/11.3.0`` -``13.2`` | | ``GCCcore/12.2.0`` -``13.2`` | | ``GCCcore/12.3.0`` -``13.2`` | | ``GCCcore/13.2.0`` -``14.2`` | | ``GCCcore/13.3.0`` -``7.10.1`` | ``-Python-2.7.11`` | ``foss/2016a`` -``7.10.1`` | ``-Python-2.7.11`` | ``intel/2016a`` -``7.11`` | ``-Python-2.7.11`` | ``foss/2016a`` -``7.11`` | ``-Python-2.7.11`` | ``intel/2016a`` -``7.11.1`` | ``-Python-2.7.12`` | ``foss/2016b`` -``7.11.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``7.8.2`` | | ``GCC/4.9.2`` -``7.9`` | | ``GCC/4.9.2`` -``8.0.1`` | ``-Python-2.7.14`` | ``foss/2017b`` -``8.0.1`` | ``-Python-3.6.3`` | ``foss/2017b`` -``8.1`` | ``-Python-2.7.14`` | ``foss/2018a`` -``8.1.1`` | ``-Python-2.7.14`` | ``intel/2018a`` -``8.3`` | ``-Python-3.7.2`` | ``GCCcore/8.2.0`` -``9.1`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` +version | toolchain +--------|---------- +``10.1`` | ``GCCcore/10.2.0`` +``10.2`` | ``GCCcore/10.3.0`` +``11.1`` | ``GCCcore/11.2.0`` +``12.1`` | ``GCCcore/11.3.0`` +``13.2`` | ``GCCcore/12.2.0`` +``13.2`` | ``GCCcore/12.3.0`` +``13.2`` | ``GCCcore/13.2.0`` +``14.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GDCHART.md b/docs/version-specific/supported-software/g/GDCHART.md deleted file mode 100644 index c4945d98e4..0000000000 --- a/docs/version-specific/supported-software/g/GDCHART.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GDCHART - -Easy to use C API, high performance library to create charts and graphs in PNG, GIF and WBMP format. - -*homepage*: - -version | toolchain ---------|---------- -``0.11.5dev`` | ``GCCcore/8.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GDCM.md b/docs/version-specific/supported-software/g/GDCM.md index eb92bbe8a3..b5357598ca 100644 --- a/docs/version-specific/supported-software/g/GDCM.md +++ b/docs/version-specific/supported-software/g/GDCM.md @@ -10,14 +10,9 @@ Grassroots DICOM: Cross-platform DICOM implementation version | toolchain --------|---------- -``2.8.8`` | ``GCCcore/6.4.0`` -``2.8.9`` | ``GCCcore/7.3.0`` ``3.0.20`` | ``GCCcore/11.3.0`` ``3.0.21`` | ``GCCcore/12.2.0`` -``3.0.4`` | ``GCCcore/8.2.0`` -``3.0.5`` | ``GCCcore/8.3.0`` ``3.0.8`` | ``GCCcore/10.2.0`` -``3.0.8`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GDGraph.md b/docs/version-specific/supported-software/g/GDGraph.md index b1e61f0211..119c4b3347 100644 --- a/docs/version-specific/supported-software/g/GDGraph.md +++ b/docs/version-specific/supported-software/g/GDGraph.md @@ -8,11 +8,9 @@ GDGraph is a Perl package to generate charts *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.54`` | ``-Perl-5.28.0`` | ``foss/2018b`` -``1.54`` | ``-Perl-5.26.1`` | ``intel/2018a`` -``1.56`` | | ``GCCcore/11.3.0`` +version | toolchain +--------|---------- +``1.56`` | ``GCCcore/11.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GDRCopy.md b/docs/version-specific/supported-software/g/GDRCopy.md index 840835ac45..98253ca165 100644 --- a/docs/version-specific/supported-software/g/GDRCopy.md +++ b/docs/version-specific/supported-software/g/GDRCopy.md @@ -12,7 +12,6 @@ version | versionsuffix | toolchain --------|---------------|---------- ``2.1`` | ``-CUDA-11.1.1`` | ``GCCcore/10.2.0`` ``2.1`` | ``-CUDA-11.2.1`` | ``GCCcore/10.2.0`` -``2.1`` | ``-CUDA-11.0.2`` | ``GCCcore/9.3.0`` ``2.2`` | | ``GCCcore/10.2.0`` ``2.2`` | | ``GCCcore/10.3.0`` ``2.3`` | | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/g/GEM-library.md b/docs/version-specific/supported-software/g/GEM-library.md deleted file mode 100644 index 6fafc3de9f..0000000000 --- a/docs/version-specific/supported-software/g/GEM-library.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GEM-library - -Next-generation sequencing platforms (Illumina/Solexa, ABI/SOLiD, etc.) call for powerful and very optimized tools to index/analyze huge genomes. The GEM library strives to be a true "next-generation" tool for handling any kind of sequence data, offering state-of-the-art algorithms and data structures specifically tailored to this demanding task. At the moment, efficient indexing and searching algorithms based on the Burrows-Wheeler transform (BWT) have been implemented. The library core is written in C for maximum speed, with concise interfaces to higher-level programming languages like OCaml and Python. Many high-performance standalone programs (mapper, splice mapper, etc.) are provided along with the library; in general, new algorithms and tools can be easily implemented on the top of it. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20130406-045632`` | ``_pre-release-3_Linux-x86_64`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GEM.md b/docs/version-specific/supported-software/g/GEM.md index ad95f6a199..0b09949fdb 100644 --- a/docs/version-specific/supported-software/g/GEM.md +++ b/docs/version-specific/supported-software/g/GEM.md @@ -4,7 +4,7 @@ search: --- # GEM -GEM (Gene-Environment interaction analysis for Millions of samples) is a software program for large-scale gene-environment interaction testing in samples from unrelated individuals. It enables genome-wide association studies in up to millions of samples while allowing for multiple exposures, control for genotype-covariate interactions, and robust inference. +GEM (Gene-Environment interaction analysis for Millions of samples) is a software program for large-scale gene-environment interaction testing in samples from unrelated individuals. It enables genome-wide association studies in up to millions of samples while allowing for multiple exposures, control for genotype-covariate interactions, and robust inference. *homepage*: diff --git a/docs/version-specific/supported-software/g/GEMMA.md b/docs/version-specific/supported-software/g/GEMMA.md index 2fecdc64f1..50858b1bca 100644 --- a/docs/version-specific/supported-software/g/GEMMA.md +++ b/docs/version-specific/supported-software/g/GEMMA.md @@ -10,10 +10,6 @@ Genome-wide Efficient Mixed Model Association version | toolchain --------|---------- -``0.97`` | ``foss/2016b`` -``0.97`` | ``foss/2017a`` -``0.98.1`` | ``foss/2018b`` -``0.98.5`` | ``foss/2020a`` ``0.98.5`` | ``foss/2021b`` ``0.98.5`` | ``foss/2022b`` diff --git a/docs/version-specific/supported-software/g/GEOS.md b/docs/version-specific/supported-software/g/GEOS.md index fcec7d5edf..9a96231b87 100644 --- a/docs/version-specific/supported-software/g/GEOS.md +++ b/docs/version-specific/supported-software/g/GEOS.md @@ -8,46 +8,18 @@ GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (J *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.10.3`` | | ``GCC/11.3.0`` -``3.11.1`` | | ``GCC/12.2.0`` -``3.12.0`` | | ``GCC/12.3.0`` -``3.12.1`` | | ``GCC/13.2.0`` -``3.5.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``3.5.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``3.6.1`` | ``-Python-2.7.12`` | ``foss/2016b`` -``3.6.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``3.6.1`` | ``-Python-2.7.13`` | ``intel/2017a`` -``3.6.1`` | ``-Python-3.6.1`` | ``intel/2017a`` -``3.6.2`` | ``-Python-2.7.14`` | ``foss/2017b`` -``3.6.2`` | ``-Python-3.6.2`` | ``foss/2017b`` -``3.6.2`` | ``-Python-3.6.3`` | ``foss/2017b`` -``3.6.2`` | ``-Python-2.7.14`` | ``foss/2018a`` -``3.6.2`` | ``-Python-3.6.4`` | ``foss/2018a`` -``3.6.2`` | ``-Python-2.7.15`` | ``foss/2018b`` -``3.6.2`` | ``-Python-3.6.6`` | ``foss/2018b`` -``3.6.2`` | ``-Python-2.7.14`` | ``intel/2017b`` -``3.6.2`` | ``-Python-3.6.3`` | ``intel/2017b`` -``3.6.2`` | ``-Python-3.6.3`` | ``intel/2018.01`` -``3.6.2`` | ``-Python-2.7.14`` | ``intel/2018a`` -``3.6.2`` | ``-Python-3.6.4`` | ``intel/2018a`` -``3.6.2`` | ``-Python-3.6.6`` | ``intel/2018b`` -``3.6.2`` | ``-Python-3.6.4`` | ``iomkl/2018a`` -``3.7.2`` | ``-Python-2.7.15`` | ``foss/2019a`` -``3.7.2`` | ``-Python-3.7.2`` | ``foss/2019a`` -``3.7.2`` | ``-Python-2.7.15`` | ``intel/2019a`` -``3.7.2`` | ``-Python-3.7.2`` | ``intel/2019a`` -``3.8.0`` | ``-Python-3.7.4`` | ``GCC/8.3.0`` -``3.8.0`` | | ``GCC/8.3.0`` -``3.8.0`` | ``-Python-3.7.4`` | ``iccifort/2019.5.281`` -``3.8.1`` | ``-Python-3.8.2`` | ``GCC/9.3.0`` -``3.8.1`` | ``-Python-3.8.2`` | ``iccifort/2020.1.217`` -``3.9.1`` | | ``GCC/10.2.0`` -``3.9.1`` | | ``GCC/10.3.0`` -``3.9.1`` | | ``GCC/11.2.0`` -``3.9.1`` | | ``iccifort/2020.4.304`` -``3.9.1`` | | ``intel-compilers/2021.4.0`` +version | toolchain +--------|---------- +``3.10.3`` | ``GCC/11.3.0`` +``3.11.1`` | ``GCC/12.2.0`` +``3.12.0`` | ``GCC/12.3.0`` +``3.12.1`` | ``GCC/13.2.0`` +``3.12.2`` | ``GCC/13.3.0`` +``3.9.1`` | ``GCC/10.2.0`` +``3.9.1`` | ``GCC/10.3.0`` +``3.9.1`` | ``GCC/11.2.0`` +``3.9.1`` | ``iccifort/2020.4.304`` +``3.9.1`` | ``intel-compilers/2021.4.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GETORB.md b/docs/version-specific/supported-software/g/GETORB.md deleted file mode 100644 index c161e8d41d..0000000000 --- a/docs/version-specific/supported-software/g/GETORB.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GETORB - -GETORB software package contains programs to handle the orbital data records (ODRs) - -*homepage*: - -version | toolchain ---------|---------- -``2.3.2`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GFOLD.md b/docs/version-specific/supported-software/g/GFOLD.md deleted file mode 100644 index 1e8a336b77..0000000000 --- a/docs/version-specific/supported-software/g/GFOLD.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GFOLD - -Generalized fold change for ranking differentially expressed genes from RNA-seq data - -*homepage*: - -version | toolchain ---------|---------- -``1.1.4`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GHC.md b/docs/version-specific/supported-software/g/GHC.md index 4fab17d70f..1d28303366 100644 --- a/docs/version-specific/supported-software/g/GHC.md +++ b/docs/version-specific/supported-software/g/GHC.md @@ -6,11 +6,10 @@ search: The Glorious/Glasgow Haskell Compiler -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``6.12.3`` | | ``system`` ``8.6.5`` | ``-x86_64`` | ``system`` ``9.10.1`` | ``-x86_64`` | ``system`` ``9.2.2`` | ``-x86_64`` | ``system`` diff --git a/docs/version-specific/supported-software/g/GIMIC.md b/docs/version-specific/supported-software/g/GIMIC.md index f0037d480e..da20dff373 100644 --- a/docs/version-specific/supported-software/g/GIMIC.md +++ b/docs/version-specific/supported-software/g/GIMIC.md @@ -8,10 +8,9 @@ The GIMIC program calculates magnetically induced currents in molecules. You ne *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.2.1`` | | ``foss/2022a`` -``2018.04.20`` | ``-Python-2.7.14`` | ``intel/2018a`` +version | toolchain +--------|---------- +``2.2.1`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GIMPS.md b/docs/version-specific/supported-software/g/GIMPS.md deleted file mode 100644 index df3472bd30..0000000000 --- a/docs/version-specific/supported-software/g/GIMPS.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GIMPS - -GIMPS: Great Internet Mersenne Prime Search; it can be useful for limited stress testing of nodes, in user space - -*homepage*: - -version | toolchain ---------|---------- -``p95v279`` | ``GCC/4.8.2`` -``p95v279.linux64`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GKeyll.md b/docs/version-specific/supported-software/g/GKeyll.md deleted file mode 100644 index 5b66e54468..0000000000 --- a/docs/version-specific/supported-software/g/GKeyll.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GKeyll - -Gkeyll v2.0 (pronounced as in the book “The Strange Case of Dr. Jekyll and Mr. Hyde”) is a computational plasma physics code mostly written in C/C++ and LuaJIT. Gkeyll contains solvers for gyrokinetic equations, Vlasov-Maxwell equations, and multi-fluid equations. Gkeyll contains ab-initio and novel implementations of a number of algorithms, and perhaps is unique in using a JIT compiled typeless dynamic language for as its main implementation language. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20220803`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GKlib-METIS.md b/docs/version-specific/supported-software/g/GKlib-METIS.md index c15eb6231a..9d0ad75db3 100644 --- a/docs/version-specific/supported-software/g/GKlib-METIS.md +++ b/docs/version-specific/supported-software/g/GKlib-METIS.md @@ -4,7 +4,7 @@ search: --- # GKlib-METIS -A library of various helper routines and frameworks used by many of the lab's software +A library of various helper routines and frameworks used by many of the lab's software *homepage*: diff --git a/docs/version-specific/supported-software/g/GL2PS.md b/docs/version-specific/supported-software/g/GL2PS.md index 7e4919832d..18c5b9d11c 100644 --- a/docs/version-specific/supported-software/g/GL2PS.md +++ b/docs/version-specific/supported-software/g/GL2PS.md @@ -6,31 +6,16 @@ search: GL2PS: an OpenGL to PostScript printing library -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.3.9`` | ``-Mesa-11.2.1`` | ``foss/2016a`` -``1.3.9`` | | ``foss/2016a`` -``1.3.9`` | | ``foss/2016b`` -``1.3.9`` | ``-Mesa-11.2.1`` | ``intel/2016a`` -``1.3.9`` | | ``intel/2016a`` -``1.3.9`` | | ``intel/2016b`` -``1.4.0`` | | ``GCCcore/8.3.0`` -``1.4.0`` | | ``foss/2017b`` -``1.4.0`` | | ``foss/2018a`` -``1.4.0`` | | ``foss/2018b`` -``1.4.0`` | | ``foss/2019a`` -``1.4.0`` | | ``intel/2017a`` -``1.4.0`` | | ``intel/2017b`` -``1.4.0`` | | ``intel/2018a`` -``1.4.2`` | | ``GCCcore/10.2.0`` -``1.4.2`` | | ``GCCcore/10.3.0`` -``1.4.2`` | | ``GCCcore/11.2.0`` -``1.4.2`` | | ``GCCcore/11.3.0`` -``1.4.2`` | | ``GCCcore/12.2.0`` -``1.4.2`` | | ``GCCcore/12.3.0`` -``1.4.2`` | | ``GCCcore/9.3.0`` +version | toolchain +--------|---------- +``1.4.2`` | ``GCCcore/10.2.0`` +``1.4.2`` | ``GCCcore/10.3.0`` +``1.4.2`` | ``GCCcore/11.2.0`` +``1.4.2`` | ``GCCcore/11.3.0`` +``1.4.2`` | ``GCCcore/12.2.0`` +``1.4.2`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GLFW.md b/docs/version-specific/supported-software/g/GLFW.md index 1ee9d64172..277f2d88c4 100644 --- a/docs/version-specific/supported-software/g/GLFW.md +++ b/docs/version-specific/supported-software/g/GLFW.md @@ -4,14 +4,12 @@ search: --- # GLFW -GLFW is an Open Source, multi-platform library for OpenGL, OpenGL ES and Vulkan development on the desktop +GLFW is an Open Source, multi-platform library for OpenGL, OpenGL ES and Vulkan development on the desktop *homepage*: version | toolchain --------|---------- -``3.2.1`` | ``intel/2018a`` -``3.3.2`` | ``GCCcore/9.3.0`` ``3.3.3`` | ``GCCcore/10.2.0`` ``3.3.4`` | ``GCCcore/10.3.0`` ``3.3.4`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/g/GLIMMER.md b/docs/version-specific/supported-software/g/GLIMMER.md deleted file mode 100644 index 7eb01c696b..0000000000 --- a/docs/version-specific/supported-software/g/GLIMMER.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GLIMMER - -Glimmer is a system for finding genes in microbial DNA, especially the genomes of bacteria, archaea, and viruses. - -*homepage*: - -version | toolchain ---------|---------- -``3.02b`` | ``foss/2016b`` -``3.02b`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GLM.md b/docs/version-specific/supported-software/g/GLM.md index ec0bbe6b64..8ab961d092 100644 --- a/docs/version-specific/supported-software/g/GLM.md +++ b/docs/version-specific/supported-software/g/GLM.md @@ -10,17 +10,12 @@ OpenGL Mathematics (GLM) is a header only C++ mathematics library for graphics s version | toolchain --------|---------- -``0.9.7.6`` | ``intel/2016a`` -``0.9.8.3`` | ``GCCcore/5.4.0`` -``0.9.8.3`` | ``GCCcore/7.3.0`` -``0.9.9.0`` | ``GCCcore/6.4.0`` ``0.9.9.8`` | ``GCCcore/10.2.0`` ``0.9.9.8`` | ``GCCcore/10.3.0`` ``0.9.9.8`` | ``GCCcore/11.2.0`` ``0.9.9.8`` | ``GCCcore/11.3.0`` ``0.9.9.8`` | ``GCCcore/12.2.0`` ``0.9.9.8`` | ``GCCcore/12.3.0`` -``0.9.9.8`` | ``GCCcore/8.3.0`` ``1.0.1`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/g/GLPK.md b/docs/version-specific/supported-software/g/GLPK.md index 3c8346b6cd..d3a42155b1 100644 --- a/docs/version-specific/supported-software/g/GLPK.md +++ b/docs/version-specific/supported-software/g/GLPK.md @@ -4,29 +4,20 @@ search: --- # GLPK -The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library. +The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library. *homepage*: version | toolchain --------|---------- -``4.58`` | ``foss/2016a`` -``4.58`` | ``intel/2016a`` -``4.60`` | ``GCCcore/5.4.0`` -``4.60`` | ``intel/2016b`` -``4.61`` | ``intel/2017a`` ``4.65`` | ``GCCcore/10.2.0`` -``4.65`` | ``GCCcore/6.4.0`` -``4.65`` | ``GCCcore/7.3.0`` -``4.65`` | ``GCCcore/8.2.0`` -``4.65`` | ``GCCcore/8.3.0`` -``4.65`` | ``GCCcore/9.3.0`` ``5.0`` | ``GCCcore/10.3.0`` ``5.0`` | ``GCCcore/11.2.0`` ``5.0`` | ``GCCcore/11.3.0`` ``5.0`` | ``GCCcore/12.2.0`` ``5.0`` | ``GCCcore/12.3.0`` ``5.0`` | ``GCCcore/13.2.0`` +``5.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GLib.md b/docs/version-specific/supported-software/g/GLib.md index c4d9ae9a58..1517c1ba92 100644 --- a/docs/version-specific/supported-software/g/GLib.md +++ b/docs/version-specific/supported-software/g/GLib.md @@ -6,29 +6,10 @@ search: GLib is one of the base libraries of the GTK+ project -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.42.1`` | ``GCC/4.9.2`` -``2.44.0`` | ``GCC/4.9.2`` -``2.47.5`` | ``foss/2016a`` -``2.47.5`` | ``gimkl/2.11.5`` -``2.47.5`` | ``intel/2016a`` -``2.48.0`` | ``foss/2016a`` -``2.48.0`` | ``intel/2016a`` -``2.49.5`` | ``foss/2016b`` -``2.49.5`` | ``intel/2016b`` -``2.52.0`` | ``foss/2017a`` -``2.52.0`` | ``intel/2017a`` -``2.53.5`` | ``GCCcore/6.3.0`` -``2.53.5`` | ``GCCcore/6.4.0`` -``2.54.2`` | ``GCCcore/6.4.0`` -``2.54.3`` | ``GCCcore/6.4.0`` -``2.54.3`` | ``GCCcore/7.3.0`` -``2.60.1`` | ``GCCcore/8.2.0`` -``2.62.0`` | ``GCCcore/8.3.0`` -``2.64.1`` | ``GCCcore/9.3.0`` ``2.66.1`` | ``GCCcore/10.2.0`` ``2.68.2`` | ``GCCcore/10.3.0`` ``2.69.1`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/g/GLibmm.md b/docs/version-specific/supported-software/g/GLibmm.md index df77f14f10..915ce893cd 100644 --- a/docs/version-specific/supported-software/g/GLibmm.md +++ b/docs/version-specific/supported-software/g/GLibmm.md @@ -10,9 +10,6 @@ C++ bindings for Glib version | toolchain --------|---------- -``2.49.7`` | ``GCCcore/7.3.0`` -``2.49.7`` | ``GCCcore/8.2.0`` -``2.49.7`` | ``GCCcore/8.3.0`` ``2.66.4`` | ``GCCcore/10.3.0`` ``2.72.1`` | ``GCCcore/11.3.0`` ``2.75.0`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/g/GMAP-GSNAP.md b/docs/version-specific/supported-software/g/GMAP-GSNAP.md index bd5e3650c2..02bb91e38c 100644 --- a/docs/version-specific/supported-software/g/GMAP-GSNAP.md +++ b/docs/version-specific/supported-software/g/GMAP-GSNAP.md @@ -10,17 +10,12 @@ GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences GSNAP: version | toolchain --------|---------- -``2016-05-01`` | ``foss/2016a`` -``2016-11-07`` | ``foss/2016b`` -``2018-05-11`` | ``intel/2018a`` -``2018-07-04`` | ``intel/2018a`` -``2019-03-15`` | ``foss/2018b`` -``2019-09-12`` | ``GCC/8.3.0`` -``2020-12-17`` | ``GCC/9.3.0`` ``2021-12-17`` | ``GCC/11.2.0`` ``2023-02-17`` | ``GCC/11.3.0`` ``2023-04-20`` | ``GCC/10.3.0`` ``2023-04-20`` | ``GCC/12.2.0`` +``2023-04-20`` | ``GCC/12.3.0`` +``2024-09-18`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GMP.md b/docs/version-specific/supported-software/g/GMP.md index b02359126b..fcdb98241f 100644 --- a/docs/version-specific/supported-software/g/GMP.md +++ b/docs/version-specific/supported-software/g/GMP.md @@ -4,40 +4,13 @@ search: --- # GMP -GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers. +GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers. -*homepage*: +*homepage*: version | toolchain --------|---------- -``4.3.2`` | ``system`` -``5.1.3`` | ``GCC/4.8.2`` -``6.0.0`` | ``GCC/4.9.2`` -``6.0.0a`` | ``GCC/4.8.4`` -``6.0.0a`` | ``GCC/4.9.2`` -``6.0.0a`` | ``GNU/4.9.3-2.25`` -``6.1.0`` | ``GCC/4.9.3-2.25`` -``6.1.0`` | ``foss/2016a`` -``6.1.0`` | ``gimkl/2.11.5`` -``6.1.0`` | ``intel/2016.02-GCC-4.9`` -``6.1.0`` | ``intel/2016a`` -``6.1.0`` | ``iomkl/2016.07`` -``6.1.0`` | ``iomkl/2016.09-GCC-4.9.3-2.25`` -``6.1.1`` | ``GCC/5.4.0-2.26`` -``6.1.1`` | ``GCCcore/5.4.0`` -``6.1.1`` | ``GCCcore/6.3.0`` -``6.1.1`` | ``foss/2016.04`` -``6.1.1`` | ``foss/2016a`` -``6.1.1`` | ``foss/2016b`` -``6.1.1`` | ``intel/2016b`` -``6.1.2`` | ``GCCcore/6.3.0`` -``6.1.2`` | ``GCCcore/6.4.0`` -``6.1.2`` | ``GCCcore/7.3.0`` -``6.1.2`` | ``GCCcore/8.2.0`` -``6.1.2`` | ``GCCcore/8.3.0`` -``6.1.2`` | ``foss/2016b`` ``6.2.0`` | ``GCCcore/10.2.0`` -``6.2.0`` | ``GCCcore/9.3.0`` ``6.2.1`` | ``GCCcore/10.3.0`` ``6.2.1`` | ``GCCcore/11.2.0`` ``6.2.1`` | ``GCCcore/11.3.0`` @@ -45,6 +18,7 @@ version | toolchain ``6.2.1`` | ``GCCcore/12.3.0`` ``6.3.0`` | ``GCCcore/13.2.0`` ``6.3.0`` | ``GCCcore/13.3.0`` +``6.3.0`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GMT.md b/docs/version-specific/supported-software/g/GMT.md index 61c25ee0b2..0454437e0c 100644 --- a/docs/version-specific/supported-software/g/GMT.md +++ b/docs/version-specific/supported-software/g/GMT.md @@ -6,16 +6,10 @@ search: GMT is an open source collection of about 80 command-line tools for manipulating geographic and Cartesian data sets (including filtering, trend fitting, gridding, projecting, etc.) and producing PostScript illustrations ranging from simple x-y plots via contour maps to artificially illuminated surfaces and 3D perspective views; the GMT supplements add another 40 more specialized and discipline-specific tools. -*homepage*: +*homepage*: version | toolchain --------|---------- -``4.5.17`` | ``foss/2018a`` -``5.4.1`` | ``intel/2017a`` -``5.4.3`` | ``foss/2018a`` -``5.4.3`` | ``intel/2017b`` -``5.4.5`` | ``foss/2019a`` -``6.2.0`` | ``foss/2019b`` ``6.2.0`` | ``foss/2020b`` diff --git a/docs/version-specific/supported-software/g/GNU.md b/docs/version-specific/supported-software/g/GNU.md deleted file mode 100644 index 46df0eb909..0000000000 --- a/docs/version-specific/supported-software/g/GNU.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GNU - -Compiler-only toolchain with GCC and binutils. - -*homepage*: - -version | toolchain ---------|---------- -``4.9.2-2.25`` | ``system`` -``4.9.3-2.25`` | ``system`` -``5.1.0-2.25`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GOATOOLS.md b/docs/version-specific/supported-software/g/GOATOOLS.md index 3f5d09d53b..0cfd87109f 100644 --- a/docs/version-specific/supported-software/g/GOATOOLS.md +++ b/docs/version-specific/supported-software/g/GOATOOLS.md @@ -13,6 +13,7 @@ version | toolchain ``1.1.6`` | ``foss/2020b`` ``1.3.1`` | ``foss/2021b`` ``1.3.1`` | ``foss/2022a`` +``1.4.12`` | ``foss/2024a`` ``1.4.5`` | ``foss/2022b`` ``1.4.5`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/a/ADOL-C.md b/docs/version-specific/supported-software/g/GOTCHA.md similarity index 58% rename from docs/version-specific/supported-software/a/ADOL-C.md rename to docs/version-specific/supported-software/g/GOTCHA.md index 9b5bde7710..fdf32690c0 100644 --- a/docs/version-specific/supported-software/a/ADOL-C.md +++ b/docs/version-specific/supported-software/g/GOTCHA.md @@ -2,16 +2,15 @@ search: boost: 0.5 --- -# ADOL-C +# GOTCHA -The package ADOL-C (Automatic Differentiation by OverLoading in C++) facilitates the evaluation of first and higher derivatives of vector functions that are defined by computer programs written in C or C++. The resulting derivative evaluation routines may be called from C/C++, Fortran, or any other language that can be linked with C. +Gotcha is a library that wraps functions. Tools can use gotcha to install hooks into other libraries, for example putting a wrapper function around libc's malloc. It is similar to LD_PRELOAD, but operates via a programmable API. This enables easy methods of accomplishing tasks like code instrumentation or wholesale replacement of mechanisms in programs without disrupting their source code. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.7.0`` | ``gompi/2019a`` -``2.7.2`` | ``gompi/2020a`` +``1.0.7`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GObject-Introspection.md b/docs/version-specific/supported-software/g/GObject-Introspection.md index 0fe4d18aeb..2de66c3407 100644 --- a/docs/version-specific/supported-software/g/GObject-Introspection.md +++ b/docs/version-specific/supported-software/g/GObject-Introspection.md @@ -6,38 +6,18 @@ search: GObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.47.1`` | | ``foss/2016a`` -``1.47.1`` | | ``intel/2016a`` -``1.48.0`` | | ``foss/2016a`` -``1.48.0`` | | ``intel/2016a`` -``1.49.1`` | | ``foss/2016b`` -``1.49.1`` | | ``intel/2016b`` -``1.52.0`` | | ``intel/2017a`` -``1.53.5`` | ``-Python-2.7.14`` | ``foss/2017b`` -``1.53.5`` | ``-Python-2.7.13`` | ``intel/2017a`` -``1.53.5`` | ``-Python-3.6.1`` | ``intel/2017a`` -``1.53.5`` | ``-Python-2.7.14`` | ``intel/2017b`` -``1.54.1`` | ``-Python-2.7.14`` | ``foss/2018a`` -``1.54.1`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.54.1`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` -``1.54.1`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` -``1.54.1`` | ``-Python-2.7.14`` | ``intel/2018a`` -``1.58.3`` | ``-Python-2.7.16`` | ``GCCcore/8.3.0`` -``1.60.1`` | ``-Python-3.7.2`` | ``GCCcore/8.2.0`` -``1.63.1`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``1.64.0`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` -``1.66.1`` | | ``GCCcore/10.2.0`` -``1.68.0`` | | ``GCCcore/10.3.0`` -``1.68.0`` | | ``GCCcore/11.2.0`` -``1.72.0`` | | ``GCCcore/11.3.0`` -``1.74.0`` | | ``GCCcore/12.2.0`` -``1.76.1`` | | ``GCCcore/12.3.0`` -``1.78.1`` | | ``GCCcore/13.2.0`` -``1.80.1`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``1.66.1`` | ``GCCcore/10.2.0`` +``1.68.0`` | ``GCCcore/10.3.0`` +``1.68.0`` | ``GCCcore/11.2.0`` +``1.72.0`` | ``GCCcore/11.3.0`` +``1.74.0`` | ``GCCcore/12.2.0`` +``1.76.1`` | ``GCCcore/12.3.0`` +``1.78.1`` | ``GCCcore/13.2.0`` +``1.80.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GP2C.md b/docs/version-specific/supported-software/g/GP2C.md deleted file mode 100644 index fc95568097..0000000000 --- a/docs/version-specific/supported-software/g/GP2C.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GP2C - -The gp2c compiler is a package for translating GP routines into the C programming language, so that they can be compiled and used with the PARI system or the GP calculator. - -*homepage*: - -version | toolchain ---------|---------- -``0.0.9pl5`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GPAW-setups.md b/docs/version-specific/supported-software/g/GPAW-setups.md index f258811c4b..53f54838ac 100644 --- a/docs/version-specific/supported-software/g/GPAW-setups.md +++ b/docs/version-specific/supported-software/g/GPAW-setups.md @@ -4,17 +4,15 @@ search: --- # GPAW-setups -PAW setup for the GPAW Density Functional Theory package. Users can install setups manually using 'gpaw install-data' or use setups from this package. The versions of GPAW and GPAW-setups can be intermixed. +PAW setup for the GPAW Density Functional Theory package. Users can install setups manually using 'gpaw install-data' or use setups from this package. The versions of GPAW and GPAW-setups can be intermixed. *homepage*: version | toolchain --------|---------- -``0.8.7929`` | ``system`` -``0.9.11271`` | ``system`` ``0.9.20000`` | ``system`` -``0.9.9672`` | ``system`` ``24.1.0`` | ``system`` +``24.11.0`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GPAW.md b/docs/version-specific/supported-software/g/GPAW.md index ff080c8358..6be2532399 100644 --- a/docs/version-specific/supported-software/g/GPAW.md +++ b/docs/version-specific/supported-software/g/GPAW.md @@ -10,17 +10,7 @@ GPAW is a density-functional theory (DFT) Python code based on the projector-aug version | versionsuffix | toolchain --------|---------------|---------- -``1.4.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.4.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``19.8.1`` | ``-ASE-3.18.0-Python-3.6.6`` | ``foss/2018b`` -``19.8.1`` | ``-Python-3.7.2`` | ``foss/2019a`` -``19.8.1`` | ``-ASE-3.18.0-Python-3.6.6`` | ``intel/2018b`` -``19.8.1`` | ``-Python-3.7.2`` | ``intel/2019a`` -``20.1.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``20.1.0`` | ``-Python-3.7.4`` | ``intel/2019b`` -``20.10.0`` | ``-ASE-3.20.1-Python-3.7.4`` | ``foss/2019b`` ``20.10.0`` | | ``foss/2020b`` -``20.10.0`` | ``-ASE-3.20.1-Python-3.7.4`` | ``intel/2019b`` ``20.10.0`` | | ``intel/2020b`` ``21.1.0`` | ``-ASE-3.21.1`` | ``foss/2020b`` ``21.1.0`` | ``-ASE-3.21.1`` | ``intel/2020b`` @@ -39,7 +29,9 @@ version | versionsuffix | toolchain ``24.1.0`` | | ``intel/2022a`` ``24.1.0`` | | ``intel/2023a`` ``24.6.0`` | ``-ASE-3.23.0`` | ``foss/2023a`` +``24.6.0`` | | ``foss/2024a`` ``24.6.0`` | ``-ASE-3.23.0`` | ``intel/2023a`` +``25.1.0`` | ``-ASE-3.24.0`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GRASP-suite.md b/docs/version-specific/supported-software/g/GRASP-suite.md index 67cba6d76f..760a8df9bf 100644 --- a/docs/version-specific/supported-software/g/GRASP-suite.md +++ b/docs/version-specific/supported-software/g/GRASP-suite.md @@ -4,7 +4,7 @@ search: --- # GRASP-suite -GRASP-suite is a collection of tools and tutorials to perform and analyse ancestral sequence reconstruction. +GRASP-suite is a collection of tools and tutorials to perform and analyse ancestral sequence reconstruction. *homepage*: diff --git a/docs/version-specific/supported-software/g/GRASP.md b/docs/version-specific/supported-software/g/GRASP.md deleted file mode 100644 index d51db9e9b7..0000000000 --- a/docs/version-specific/supported-software/g/GRASP.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GRASP - -The General Relativistic Atomic Structure Package (GRASP) is a set of Fortran 90 programs for performing fully-relativistic electron structure calculations of atoms. - -*homepage*: - -version | toolchain ---------|---------- -``2018`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GRASS.md b/docs/version-specific/supported-software/g/GRASS.md index 7db9a18bbb..6907a6feeb 100644 --- a/docs/version-specific/supported-software/g/GRASS.md +++ b/docs/version-specific/supported-software/g/GRASS.md @@ -6,13 +6,12 @@ search: The Geographic Resources Analysis Support System - used for geospatial data management and analysis, image processing, graphics and maps production, spatial modeling, and visualization -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``7.6.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``7.8.3`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``8.2.0`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``8.2.0`` | ``foss/2021b`` +``8.4.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GRIT.md b/docs/version-specific/supported-software/g/GRIT.md deleted file mode 100644 index bfcac6444f..0000000000 --- a/docs/version-specific/supported-software/g/GRIT.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GRIT - -GRIT - A tool for the integrative analysis of RNA-seq type assays - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0.5`` | ``-Python-2.7.12`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GRNBoost.md b/docs/version-specific/supported-software/g/GRNBoost.md deleted file mode 100644 index 7fff914dfa..0000000000 --- a/docs/version-specific/supported-software/g/GRNBoost.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GRNBoost - -XGBoost is an optimized distributed gradient boosting library designed to be highly efficient, flexible and portable. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20171009`` | ``-Java-1.8.0_152`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GROMACS-LS.md b/docs/version-specific/supported-software/g/GROMACS-LS.md new file mode 100644 index 0000000000..db90ac1524 --- /dev/null +++ b/docs/version-specific/supported-software/g/GROMACS-LS.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# GROMACS-LS + +GROMACS-LS and the MDStress library enable the calculation of local stress fields from molecular dynamics simulations. This is a double precision only CPU only build. + +*homepage*: + +version | toolchain +--------|---------- +``2016.3`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/g/GROMACS.md b/docs/version-specific/supported-software/g/GROMACS.md index 8805e774e0..3aec0d65bf 100644 --- a/docs/version-specific/supported-software/g/GROMACS.md +++ b/docs/version-specific/supported-software/g/GROMACS.md @@ -4,56 +4,12 @@ search: --- # GROMACS -GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. +GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a CPU only build, containing both MPI and threadMPI builds for both single and double precision. It also contains the gmxapi extension for the single precision MPI build. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2016`` | ``-hybrid`` | ``foss/2016b`` -``2016`` | ``-mt`` | ``foss/2016b`` -``2016.1`` | ``-PLUMED`` | ``foss/2017a`` -``2016.2`` | | ``foss/2017a`` -``2016.3`` | ``-GPU-enabled`` | ``foss/2016b`` -``2016.3`` | | ``foss/2017a`` -``2016.3`` | | ``intel/2017a`` -``2016.4`` | | ``foss/2017b`` -``2016.4`` | | ``fosscuda/2017b`` -``2016.4`` | | ``giolf/2017b`` -``2016.4`` | | ``intel/2017a`` -``2016.4`` | | ``intel/2017b`` -``2016.4`` | | ``intelcuda/2017b`` -``2016.5`` | | ``intel/2018a`` -``2018`` | | ``foss/2018a`` -``2018.1`` | ``-PLUMED`` | ``foss/2018b`` -``2018.2`` | | ``foss/2017b`` -``2018.2`` | | ``foss/2018b`` -``2018.2`` | | ``fosscuda/2017b`` -``2018.2`` | | ``fosscuda/2018b`` -``2018.2`` | | ``intel/2017b`` -``2018.2`` | | ``intelcuda/2017b`` -``2018.3`` | | ``foss/2018b`` -``2018.3`` | | ``fosscuda/2018b`` -``2018.4`` | ``-PLUMED-2.5.0`` | ``foss/2018b`` -``2018.4`` | ``-PLUMED-2.5.0`` | ``fosscuda/2018b`` -``2019`` | | ``foss/2018b`` -``2019`` | | ``fosscuda/2018b`` -``2019.2`` | | ``fosscuda/2019a`` -``2019.3`` | | ``foss/2019a`` -``2019.3`` | | ``foss/2019b`` -``2019.3`` | | ``fosscuda/2019a`` -``2019.3`` | | ``fosscuda/2019b`` -``2019.4`` | ``-PLUMED-2.5.4`` | ``foss/2019b`` -``2019.4`` | | ``foss/2019b`` -``2019.4`` | ``-PLUMED-2.5.4`` | ``fosscuda/2019b`` -``2019.4`` | | ``fosscuda/2019b`` -``2019.6`` | | ``fosscuda/2019b`` -``2020`` | | ``foss/2019b`` -``2020`` | | ``fosscuda/2019b`` -``2020.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``2020.3`` | | ``fosscuda/2019b`` -``2020.4`` | ``-Python-3.8.2`` | ``foss/2020a`` -``2020.5`` | ``-Python-3.8.2`` | ``fosscuda/2020a`` ``2021`` | | ``foss/2020b`` ``2021`` | | ``fosscuda/2020b`` ``2021.2`` | | ``fosscuda/2020b`` @@ -72,13 +28,14 @@ version | versionsuffix | toolchain ``2023.3`` | ``-CUDA-12.1.1-PLUMED-2.9.0`` | ``foss/2023a`` ``2023.3`` | ``-PLUMED-2.9.0`` | ``foss/2023a`` ``2023.3`` | | ``foss/2023a`` +``2023.4`` | | ``foss/2023a`` ``2024.1`` | | ``foss/2023b`` -``5.1.2`` | ``-hybrid`` | ``foss/2016a`` -``5.1.2`` | ``-mt`` | ``foss/2016a`` -``5.1.2`` | ``-hybrid-dp`` | ``intel/2016a`` -``5.1.2`` | ``-hybrid`` | ``intel/2016a`` -``5.1.4`` | ``-hybrid`` | ``foss/2016b`` -``5.1.4`` | ``-mt`` | ``foss/2016b`` +``2024.3`` | ``-PLUMED-2.9.2`` | ``foss/2023b`` +``2024.3`` | | ``foss/2023b`` +``2024.4`` | ``-CUDA-12.4.0-PLUMED-2.9.2`` | ``foss/2023b`` +``2024.4`` | ``-CUDA-12.4.0`` | ``foss/2023b`` +``2024.4`` | ``-PLUMED-2.9.2`` | ``foss/2023b`` +``2024.4`` | | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GSEA.md b/docs/version-specific/supported-software/g/GSEA.md index a887166adb..6b36f6ede0 100644 --- a/docs/version-specific/supported-software/g/GSEA.md +++ b/docs/version-specific/supported-software/g/GSEA.md @@ -4,7 +4,7 @@ search: --- # GSEA -Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states (e.g. phenotypes). +Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states (e.g. phenotypes). *homepage*: diff --git a/docs/version-specific/supported-software/g/GSL.md b/docs/version-specific/supported-software/g/GSL.md index 647743f79a..156c10846b 100644 --- a/docs/version-specific/supported-software/g/GSL.md +++ b/docs/version-specific/supported-software/g/GSL.md @@ -6,34 +6,11 @@ search: The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.16`` | ``foss/2016a`` -``1.16`` | ``intel/2016a`` -``2.1`` | ``GCC/5.4.0-2.26`` -``2.1`` | ``foss/2016a`` -``2.1`` | ``foss/2016b`` -``2.1`` | ``iccifort/2016.3.210-GCC-5.4.0-2.26`` -``2.1`` | ``intel/2016a`` -``2.1`` | ``intel/2016b`` -``2.2.1`` | ``intel/2016a`` -``2.2.1`` | ``intel/2016b`` -``2.3`` | ``foss/2016b`` -``2.3`` | ``foss/2017a`` -``2.3`` | ``intel/2016b`` -``2.3`` | ``intel/2017a`` -``2.4`` | ``GCCcore/6.4.0`` -``2.5`` | ``GCC/7.3.0-2.30`` -``2.5`` | ``GCC/8.2.0-2.31.1`` -``2.5`` | ``iccifort/2018.3.222-GCC-7.3.0-2.30`` -``2.5`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` ``2.6`` | ``GCC/10.2.0`` -``2.6`` | ``GCC/8.3.0`` -``2.6`` | ``GCC/9.3.0`` -``2.6`` | ``iccifort/2019.5.281`` -``2.6`` | ``iccifort/2020.1.217`` ``2.6`` | ``iccifort/2020.4.304`` ``2.7`` | ``GCC/10.3.0`` ``2.7`` | ``GCC/11.2.0`` @@ -44,6 +21,7 @@ version | toolchain ``2.7`` | ``intel-compilers/2021.2.0`` ``2.7`` | ``intel-compilers/2021.4.0`` ``2.7`` | ``intel-compilers/2022.1.0`` +``2.8`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GST-plugins-base.md b/docs/version-specific/supported-software/g/GST-plugins-base.md index 3763b7988d..3bc294794c 100644 --- a/docs/version-specific/supported-software/g/GST-plugins-base.md +++ b/docs/version-specific/supported-software/g/GST-plugins-base.md @@ -10,23 +10,14 @@ GStreamer is a library for constructing graphs of media-handling components. Th version | toolchain --------|---------- -``0.10.36`` | ``foss/2016a`` -``0.10.36`` | ``foss/2017b`` -``0.10.36`` | ``foss/2018b`` -``0.10.36`` | ``intel/2016a`` -``0.10.36`` | ``intel/2016b`` -``0.10.36`` | ``intel/2017a`` -``0.10.36`` | ``intel/2017b`` -``1.16.0`` | ``GCC/8.2.0-2.31.1`` -``1.16.2`` | ``GCC/8.3.0`` ``1.18.4`` | ``GCC/10.2.0`` ``1.18.4`` | ``GCC/10.3.0`` ``1.18.5`` | ``GCC/11.2.0`` ``1.20.2`` | ``GCC/11.3.0`` ``1.22.1`` | ``GCC/12.2.0`` ``1.22.5`` | ``GCC/12.3.0`` -``1.6.4`` | ``foss/2016a`` -``1.8.3`` | ``foss/2016a`` +``1.24.8`` | ``GCC/13.2.0`` +``1.24.8`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GStreamer.md b/docs/version-specific/supported-software/g/GStreamer.md index b1abb8af16..440f481482 100644 --- a/docs/version-specific/supported-software/g/GStreamer.md +++ b/docs/version-specific/supported-software/g/GStreamer.md @@ -10,24 +10,14 @@ GStreamer is a library for constructing graphs of media-handling components. Th version | toolchain --------|---------- -``0.10.36`` | ``foss/2016a`` -``0.10.36`` | ``foss/2017b`` -``0.10.36`` | ``foss/2018b`` -``0.10.36`` | ``intel/2016a`` -``0.10.36`` | ``intel/2016b`` -``0.10.36`` | ``intel/2017a`` -``0.10.36`` | ``intel/2017b`` -``1.15.1`` | ``fosscuda/2018b`` -``1.16.0`` | ``GCC/8.2.0-2.31.1`` -``1.16.2`` | ``GCC/8.3.0`` ``1.18.4`` | ``GCC/10.2.0`` ``1.18.4`` | ``GCC/10.3.0`` ``1.18.5`` | ``GCC/11.2.0`` ``1.20.2`` | ``GCC/11.3.0`` ``1.22.1`` | ``GCC/12.2.0`` ``1.22.5`` | ``GCC/12.3.0`` -``1.6.4`` | ``foss/2016a`` -``1.8.3`` | ``foss/2016a`` +``1.24.8`` | ``GCC/13.2.0`` +``1.24.8`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GTDB-Tk.md b/docs/version-specific/supported-software/g/GTDB-Tk.md index 7e1a9694e4..72973da00c 100644 --- a/docs/version-specific/supported-software/g/GTDB-Tk.md +++ b/docs/version-specific/supported-software/g/GTDB-Tk.md @@ -8,23 +8,18 @@ A toolkit for assigning objective taxonomic classifications to bacterial and arc *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.2.2`` | ``-Python-2.7.15`` | ``intel/2018b`` -``0.3.2`` | ``-Python-2.7.15`` | ``foss/2019a`` -``0.3.2`` | ``-Python-2.7.15`` | ``intel/2019a`` -``1.0.2`` | ``-Python-3.7.4`` | ``intel/2019b`` -``1.3.0`` | ``-Python-3.8.2`` | ``intel/2020a`` -``1.5.0`` | | ``intel/2020b`` -``1.7.0`` | | ``foss/2020b`` -``1.7.0`` | | ``foss/2021a`` -``1.7.0`` | | ``intel/2020b`` -``2.0.0`` | | ``foss/2021a`` -``2.0.0`` | | ``intel/2021b`` -``2.1.1`` | | ``foss/2021b`` -``2.3.2`` | | ``foss/2022a`` -``2.3.2`` | | ``foss/2023a`` -``2.4.0`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``1.5.0`` | ``intel/2020b`` +``1.7.0`` | ``foss/2020b`` +``1.7.0`` | ``foss/2021a`` +``1.7.0`` | ``intel/2020b`` +``2.0.0`` | ``foss/2021a`` +``2.0.0`` | ``intel/2021b`` +``2.1.1`` | ``foss/2021b`` +``2.3.2`` | ``foss/2022a`` +``2.3.2`` | ``foss/2023a`` +``2.4.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GTK+.md b/docs/version-specific/supported-software/g/GTK+.md index d89c8e846d..f139c25baf 100644 --- a/docs/version-specific/supported-software/g/GTK+.md +++ b/docs/version-specific/supported-software/g/GTK+.md @@ -10,23 +10,8 @@ The GTK+ 2 package contains libraries used for creating graphical user interface version | toolchain --------|---------- -``2.24.28`` | ``intel/2016a`` -``2.24.30`` | ``foss/2016a`` -``2.24.30`` | ``intel/2016a`` -``2.24.31`` | ``foss/2016b`` -``2.24.31`` | ``intel/2016b`` -``2.24.31`` | ``intel/2017a`` -``2.24.32`` | ``foss/2017b`` -``2.24.32`` | ``foss/2018a`` -``2.24.32`` | ``foss/2018b`` -``2.24.32`` | ``intel/2017b`` -``2.24.32`` | ``intel/2018a`` ``2.24.33`` | ``GCCcore/10.3.0`` -``3.22.30`` | ``fosscuda/2018b`` -``3.24.13`` | ``GCCcore/8.3.0`` -``3.24.17`` | ``GCCcore/9.3.0`` ``3.24.23`` | ``GCCcore/10.2.0`` -``3.24.8`` | ``GCCcore/8.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GTK3.md b/docs/version-specific/supported-software/g/GTK3.md index 3367e1b072..bb8b80060d 100644 --- a/docs/version-specific/supported-software/g/GTK3.md +++ b/docs/version-specific/supported-software/g/GTK3.md @@ -16,6 +16,7 @@ version | toolchain ``3.24.35`` | ``GCCcore/12.2.0`` ``3.24.37`` | ``GCCcore/12.3.0`` ``3.24.39`` | ``GCCcore/13.2.0`` +``3.24.42`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GTOOL.md b/docs/version-specific/supported-software/g/GTOOL.md deleted file mode 100644 index bc735e0a8f..0000000000 --- a/docs/version-specific/supported-software/g/GTOOL.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GTOOL - -GTOOL is a program for transforming sets of genotype data for use with the programs SNPTEST and IMPUTE. - -*homepage*: - -version | toolchain ---------|---------- -``0.7.5`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GTS.md b/docs/version-specific/supported-software/g/GTS.md index bd2f4c5fc5..2d89281ff1 100644 --- a/docs/version-specific/supported-software/g/GTS.md +++ b/docs/version-specific/supported-software/g/GTS.md @@ -17,17 +17,6 @@ version | toolchain ``0.7.6`` | ``GCCcore/12.2.0`` ``0.7.6`` | ``GCCcore/12.3.0`` ``0.7.6`` | ``GCCcore/13.3.0`` -``0.7.6`` | ``GCCcore/8.3.0`` -``0.7.6`` | ``GCCcore/9.3.0`` -``0.7.6`` | ``foss/2016a`` -``0.7.6`` | ``foss/2016b`` -``0.7.6`` | ``foss/2018b`` -``0.7.6`` | ``foss/2019b`` -``0.7.6`` | ``foss/2020a`` -``0.7.6`` | ``intel/2016a`` -``0.7.6`` | ``intel/2016b`` -``0.7.6`` | ``intel/2018a`` -``20121130`` | ``foss/2017b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GULP.md b/docs/version-specific/supported-software/g/GULP.md index 9f9f042227..679a0e98de 100644 --- a/docs/version-specific/supported-software/g/GULP.md +++ b/docs/version-specific/supported-software/g/GULP.md @@ -10,7 +10,6 @@ GULP is a program for performing a variety of types of simulation on materials version | toolchain --------|---------- -``5.1`` | ``intel/2019a`` ``6.1`` | ``foss/2021b`` diff --git a/docs/version-specific/supported-software/g/Gaia.md b/docs/version-specific/supported-software/g/Gaia.md deleted file mode 100644 index a9ad04e82e..0000000000 --- a/docs/version-specific/supported-software/g/Gaia.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Gaia - -Gaia is a C++ library with python bindings which implements similarity measures and classifications on the results of audio analysis, and generates classification models that Essentia can use to compute high-level description of music. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.4.5`` | ``-Python-2.7.15`` | ``GCCcore/8.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GapCloser.md b/docs/version-specific/supported-software/g/GapCloser.md deleted file mode 100644 index f677fbd7bd..0000000000 --- a/docs/version-specific/supported-software/g/GapCloser.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GapCloser - -GapCloser is designed to close the gaps emerging during the scaffolding process by SOAPdenovo or other assembler, using the abundant pair relationships of short reads. - -*homepage*: - -version | toolchain ---------|---------- -``1.12-r6`` | ``foss/2018a`` -``1.12-r6`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GapFiller.md b/docs/version-specific/supported-software/g/GapFiller.md index 237afc0495..9596675e41 100644 --- a/docs/version-specific/supported-software/g/GapFiller.md +++ b/docs/version-specific/supported-software/g/GapFiller.md @@ -10,7 +10,6 @@ GapFiller is a seed-and-extend local assembler to fill the gap within paired rea version | toolchain --------|---------- -``2.1.1`` | ``intel/2017a`` ``2.1.2`` | ``GCC/11.3.0`` diff --git a/docs/version-specific/supported-software/g/Gctf.md b/docs/version-specific/supported-software/g/Gctf.md deleted file mode 100644 index db567c964a..0000000000 --- a/docs/version-specific/supported-software/g/Gctf.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Gctf - -Gctf: real-time CTF determination and correction, Kai Zhang, 2016 - -*homepage*: - -version | toolchain ---------|---------- -``1.06`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/Gdk-Pixbuf.md b/docs/version-specific/supported-software/g/Gdk-Pixbuf.md index f42fd868d1..735b170a04 100644 --- a/docs/version-specific/supported-software/g/Gdk-Pixbuf.md +++ b/docs/version-specific/supported-software/g/Gdk-Pixbuf.md @@ -10,24 +10,7 @@ The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It version | toolchain --------|---------- -``2.32.3`` | ``intel/2016a`` -``2.35.1`` | ``foss/2016a`` -``2.35.1`` | ``intel/2016a`` -``2.36.0`` | ``foss/2016b`` -``2.36.0`` | ``intel/2016b`` -``2.36.10`` | ``intel/2017a`` -``2.36.11`` | ``foss/2017b`` -``2.36.11`` | ``foss/2018a`` -``2.36.11`` | ``fosscuda/2018b`` -``2.36.11`` | ``intel/2017b`` -``2.36.11`` | ``intel/2018a`` -``2.36.12`` | ``foss/2018b`` -``2.36.12`` | ``fosscuda/2018b`` -``2.36.8`` | ``intel/2017a`` -``2.38.1`` | ``GCCcore/8.2.0`` -``2.38.2`` | ``GCCcore/8.3.0`` ``2.40.0`` | ``GCCcore/10.2.0`` -``2.40.0`` | ``GCCcore/9.3.0`` ``2.42.10`` | ``GCCcore/12.2.0`` ``2.42.10`` | ``GCCcore/12.3.0`` ``2.42.10`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/g/Geant4.md b/docs/version-specific/supported-software/g/Geant4.md index 422b28cc31..24ef0ab28a 100644 --- a/docs/version-specific/supported-software/g/Geant4.md +++ b/docs/version-specific/supported-software/g/Geant4.md @@ -4,23 +4,12 @@ search: --- # Geant4 -Geant4 is a toolkit for the simulation of the passage of particles through matter. Its areas of application include high energy, nuclear and accelerator physics, as well as studies in medical and space science. +Geant4 is a toolkit for the simulation of the passage of particles through matter. Its areas of application include high energy, nuclear and accelerator physics, as well as studies in medical and space science. -*homepage*: +*homepage*: version | toolchain --------|---------- -``10.01.p03`` | ``intel/2016a`` -``10.02.p01`` | ``intel/2016a`` -``10.03.p03`` | ``foss/2017b`` -``10.03.p03`` | ``intel/2017b`` -``10.04`` | ``intel/2017b`` -``10.5`` | ``foss/2017b`` -``10.5`` | ``foss/2018b`` -``10.5`` | ``intel/2017b`` -``10.5`` | ``intel/2018b`` -``10.6`` | ``foss/2019b`` -``10.6.2`` | ``foss/2020a`` ``10.7.1`` | ``GCC/10.2.0`` ``10.7.1`` | ``GCC/11.2.0`` ``11.0.0`` | ``GCC/11.2.0`` @@ -29,8 +18,6 @@ version | toolchain ``11.0.2`` | ``GCC/11.3.0`` ``11.1.2`` | ``GCC/11.3.0`` ``11.2.2`` | ``GCC/12.3.0`` -``9.5.p02`` | ``intel/2016a`` -``9.6.p04`` | ``intel/2016a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GeneMark-ET.md b/docs/version-specific/supported-software/g/GeneMark-ET.md index 05254a2b27..6f4e288015 100644 --- a/docs/version-specific/supported-software/g/GeneMark-ET.md +++ b/docs/version-specific/supported-software/g/GeneMark-ET.md @@ -10,11 +10,10 @@ Eukaryotic gene prediction suite with automatic training version | toolchain --------|---------- -``4.38`` | ``GCCcore/8.2.0`` -``4.57`` | ``GCCcore/8.3.0`` ``4.65`` | ``GCCcore/10.2.0`` ``4.71`` | ``GCCcore/11.2.0`` ``4.71`` | ``GCCcore/11.3.0`` +``4.72`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GenomeMapper.md b/docs/version-specific/supported-software/g/GenomeMapper.md deleted file mode 100644 index 980922a0e2..0000000000 --- a/docs/version-specific/supported-software/g/GenomeMapper.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GenomeMapper - -GenomeMapper is a short read mapping tool designed for accurate read alignments. It quickly aligns millions of reads either with ungapped or gapped alignments. This version is used to align against a single reference. If you are unsure which one is the appropriate GenomeMapper, you might want to use this one. - -*homepage*: - -version | toolchain ---------|---------- -``0.4.4`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GenomeTester4.md b/docs/version-specific/supported-software/g/GenomeTester4.md deleted file mode 100644 index 50a10594ed..0000000000 --- a/docs/version-specific/supported-software/g/GenomeTester4.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GenomeTester4 - -A toolkit for performing set operations - union, intersection and complement - on k-mer lists. - -*homepage*: - -version | toolchain ---------|---------- -``4.0`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GenomeThreader.md b/docs/version-specific/supported-software/g/GenomeThreader.md index d4d064de06..9b0ba162ac 100644 --- a/docs/version-specific/supported-software/g/GenomeThreader.md +++ b/docs/version-specific/supported-software/g/GenomeThreader.md @@ -6,11 +6,10 @@ search: GenomeThreader is a software tool to compute gene structure predictions. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.7.1`` | ``-Linux_x86_64-64bit`` | ``system`` ``1.7.3`` | ``-Linux_x86_64-64bit`` | ``system`` diff --git a/docs/version-specific/supported-software/g/GenomeTools.md b/docs/version-specific/supported-software/g/GenomeTools.md index 7408b7944a..bcabb3e3b1 100644 --- a/docs/version-specific/supported-software/g/GenomeTools.md +++ b/docs/version-specific/supported-software/g/GenomeTools.md @@ -8,17 +8,12 @@ A comprehensive software library for efficient processing of structured genome a *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.5.10`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.5.10`` | | ``foss/2018b`` -``1.6.1`` | | ``GCC/10.2.0`` -``1.6.1`` | ``-Python-2.7.16`` | ``GCC/8.3.0`` -``1.6.1`` | | ``GCC/8.3.0`` -``1.6.1`` | | ``GCC/9.3.0`` -``1.6.2`` | | ``GCC/10.3.0`` -``1.6.2`` | | ``GCC/11.3.0`` -``1.6.2`` | | ``GCC/12.2.0`` +version | toolchain +--------|---------- +``1.6.1`` | ``GCC/10.2.0`` +``1.6.2`` | ``GCC/10.3.0`` +``1.6.2`` | ``GCC/11.3.0`` +``1.6.2`` | ``GCC/12.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/Genome_Profiler.md b/docs/version-specific/supported-software/g/Genome_Profiler.md deleted file mode 100644 index 3948b62e69..0000000000 --- a/docs/version-specific/supported-software/g/Genome_Profiler.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Genome_Profiler - -Genome Profiler (GeP) is a program to perform whole-genome multilocus sequence typing (wgMLST) analysis for bacterial isolates - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1`` | ``-Perl-5.24.0`` | ``foss/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GenotypeHarmonizer.md b/docs/version-specific/supported-software/g/GenotypeHarmonizer.md deleted file mode 100644 index ca5615ee57..0000000000 --- a/docs/version-specific/supported-software/g/GenotypeHarmonizer.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GenotypeHarmonizer - -The Genotype Harmonizer is an easy to use command-line tool that allows harmonization of genotype data stored using different file formats with different and potentially unknown strands. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.4.14`` | ``-Java-1.7.0_80`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GeoDict.md b/docs/version-specific/supported-software/g/GeoDict.md index 51ab7c86a3..bd7fcfbd7c 100644 --- a/docs/version-specific/supported-software/g/GeoDict.md +++ b/docs/version-specific/supported-software/g/GeoDict.md @@ -11,6 +11,7 @@ The innovative and easy-to-use material simulator GeoDict is the most complete s version | toolchain --------|---------- ``2024.SP2`` | ``gmpich/2024.06`` +``2024.SP5`` | ``gmpich/2024.06`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/Gerris.md b/docs/version-specific/supported-software/g/Gerris.md index e1896c14cf..d1400c5112 100644 --- a/docs/version-specific/supported-software/g/Gerris.md +++ b/docs/version-specific/supported-software/g/Gerris.md @@ -4,13 +4,12 @@ search: --- # Gerris -Gerris is a Free Software program for the solution of the partial differential equations describing fluid flow +Gerris is a Free Software program for the solution of the partial differential equations describing fluid flow *homepage*: version | toolchain --------|---------- -``20131206`` | ``foss/2017b`` ``20131206`` | ``gompi/2023a`` diff --git a/docs/version-specific/supported-software/g/GetOrganelle.md b/docs/version-specific/supported-software/g/GetOrganelle.md index 661e2da18f..fa7fdcea2d 100644 --- a/docs/version-specific/supported-software/g/GetOrganelle.md +++ b/docs/version-specific/supported-software/g/GetOrganelle.md @@ -8,14 +8,13 @@ This toolkit assemblies organelle genome from genomic skimming data. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.7.2`` | ``-Python-3.8.2`` | ``foss/2020a`` -``1.7.4-pre2`` | | ``foss/2020b`` -``1.7.5.3`` | | ``foss/2021b`` -``1.7.6.1`` | | ``foss/2021b`` -``1.7.7.0`` | | ``foss/2022a`` -``1.7.7.1`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``1.7.4-pre2`` | ``foss/2020b`` +``1.7.5.3`` | ``foss/2021b`` +``1.7.6.1`` | ``foss/2021b`` +``1.7.7.0`` | ``foss/2022a`` +``1.7.7.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GffCompare.md b/docs/version-specific/supported-software/g/GffCompare.md index 95c2a630f4..8330331ab5 100644 --- a/docs/version-specific/supported-software/g/GffCompare.md +++ b/docs/version-specific/supported-software/g/GffCompare.md @@ -6,14 +6,10 @@ search: GffCompare provides classification and reference annotation mapping and matching statistics for RNA-Seq assemblies (transfrags) or other generic GFF/GTF files. -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.10.1`` | ``foss/2016b`` -``0.10.6`` | ``GCCcore/7.3.0`` -``0.11.6`` | ``GCCcore/8.3.0`` -``0.11.6`` | ``GCCcore/9.3.0`` ``0.12.2`` | ``GCC/10.3.0`` ``0.12.6`` | ``GCC/11.2.0`` diff --git a/docs/version-specific/supported-software/g/Ghostscript.md b/docs/version-specific/supported-software/g/Ghostscript.md index 8754ad8bdd..97fc24ca7c 100644 --- a/docs/version-specific/supported-software/g/Ghostscript.md +++ b/docs/version-specific/supported-software/g/Ghostscript.md @@ -8,31 +8,16 @@ Ghostscript is a versatile processor for PostScript data with the ability to ren *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``10.0.0`` | | ``GCCcore/12.2.0`` -``10.01.2`` | | ``GCCcore/12.3.0`` -``10.02.1`` | | ``GCCcore/13.2.0`` -``10.03.1`` | | ``GCCcore/13.3.0`` -``9.19`` | | ``intel/2016a`` -``9.19`` | | ``intel/2016b`` -``9.20`` | | ``foss/2016b`` -``9.20`` | | ``intel/2016b`` -``9.21`` | | ``intel/2017a`` -``9.22`` | ``-cairo-1.14.12`` | ``GCCcore/6.4.0`` -``9.22`` | | ``GCCcore/6.4.0`` -``9.22`` | | ``foss/2017b`` -``9.22`` | | ``intel/2017b`` -``9.23`` | ``-cairo-1.14.12`` | ``GCCcore/6.4.0`` -``9.23`` | | ``GCCcore/6.4.0`` -``9.23`` | | ``GCCcore/7.3.0`` -``9.27`` | | ``GCCcore/8.2.0`` -``9.50`` | | ``GCCcore/8.3.0`` -``9.52`` | | ``GCCcore/9.3.0`` -``9.53.3`` | | ``GCCcore/10.2.0`` -``9.54.0`` | | ``GCCcore/10.3.0`` -``9.54.0`` | | ``GCCcore/11.2.0`` -``9.56.1`` | | ``GCCcore/11.3.0`` +version | toolchain +--------|---------- +``10.0.0`` | ``GCCcore/12.2.0`` +``10.01.2`` | ``GCCcore/12.3.0`` +``10.02.1`` | ``GCCcore/13.2.0`` +``10.03.1`` | ``GCCcore/13.3.0`` +``9.53.3`` | ``GCCcore/10.2.0`` +``9.54.0`` | ``GCCcore/10.3.0`` +``9.54.0`` | ``GCCcore/11.2.0`` +``9.56.1`` | ``GCCcore/11.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GitPython.md b/docs/version-specific/supported-software/g/GitPython.md index d3c74cd15a..e7e7e1021d 100644 --- a/docs/version-specific/supported-software/g/GitPython.md +++ b/docs/version-specific/supported-software/g/GitPython.md @@ -8,22 +8,17 @@ GitPython is a python library used to interact with Git repositories *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1.11`` | ``-Python-3.6.6`` | ``foss/2018b`` -``2.1.11`` | ``-Python-3.6.6`` | ``intel/2018b`` -``2.1.15`` | | ``system`` -``3.0.3`` | ``-Python-3.7.2`` | ``GCCcore/8.2.0`` -``3.1.0`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``3.1.14`` | | ``GCCcore/10.2.0`` -``3.1.18`` | | ``GCCcore/10.3.0`` -``3.1.24`` | | ``GCCcore/11.2.0`` -``3.1.27`` | | ``GCCcore/11.3.0`` -``3.1.31`` | | ``GCCcore/12.2.0`` -``3.1.40`` | | ``GCCcore/12.3.0`` -``3.1.42`` | | ``GCCcore/13.2.0`` -``3.1.43`` | | ``GCCcore/13.3.0`` -``3.1.9`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` +version | toolchain +--------|---------- +``2.1.15`` | ``system`` +``3.1.14`` | ``GCCcore/10.2.0`` +``3.1.18`` | ``GCCcore/10.3.0`` +``3.1.24`` | ``GCCcore/11.2.0`` +``3.1.27`` | ``GCCcore/11.3.0`` +``3.1.31`` | ``GCCcore/12.2.0`` +``3.1.40`` | ``GCCcore/12.3.0`` +``3.1.42`` | ``GCCcore/13.2.0`` +``3.1.43`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/Givaro.md b/docs/version-specific/supported-software/g/Givaro.md index 1512832326..5c719b213c 100644 --- a/docs/version-specific/supported-software/g/Givaro.md +++ b/docs/version-specific/supported-software/g/Givaro.md @@ -6,11 +6,10 @@ search: C++ library for arithmetic and algebraic computations -*homepage*: +*homepage*: version | toolchain --------|---------- -``4.0.1`` | ``foss/2016a`` ``4.2.0`` | ``GCCcore/11.3.0`` ``4.2.0`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/g/Giza.md b/docs/version-specific/supported-software/g/Giza.md index c18ae24e91..7335c788f2 100644 --- a/docs/version-specific/supported-software/g/Giza.md +++ b/docs/version-specific/supported-software/g/Giza.md @@ -4,13 +4,12 @@ search: --- # Giza -Giza is an open, lightweight scientific plotting library built on top of cairo that provides uniform output to multiple devices. +Giza is an open, lightweight scientific plotting library built on top of cairo that provides uniform output to multiple devices. *homepage*: version | toolchain --------|---------- -``1.1.0`` | ``foss/2018b`` ``1.4.1`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/g/Glade.md b/docs/version-specific/supported-software/g/Glade.md deleted file mode 100644 index 6f6bd7c631..0000000000 --- a/docs/version-specific/supported-software/g/Glade.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Glade - -Glade is a RAD tool to enable quick & easy development of user interfaces for the GTK+ toolkit and the GNOME desktop environment. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.8.5`` | ``-Python-2.7.11`` | ``intel/2016a`` -``3.8.5`` | ``-Python-2.7.14`` | ``intel/2017b`` -``3.8.6`` | ``-Python-2.7.15`` | ``foss/2018b`` -``3.8.6`` | ``-Python-2.7.14`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GlimmerHMM.md b/docs/version-specific/supported-software/g/GlimmerHMM.md index 6963ef3ca8..04cef3b95a 100644 --- a/docs/version-specific/supported-software/g/GlimmerHMM.md +++ b/docs/version-specific/supported-software/g/GlimmerHMM.md @@ -10,11 +10,9 @@ GlimmerHMM is a new gene finder based on a Generalized Hidden Markov Model. Alt version | toolchain --------|---------- -``3.0.4`` | ``foss/2016b`` -``3.0.4`` | ``foss/2018b`` ``3.0.4c`` | ``GCC/10.2.0`` ``3.0.4c`` | ``GCC/11.2.0`` -``3.0.4c`` | ``GCC/8.3.0`` +``3.0.4c`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GlobalArrays.md b/docs/version-specific/supported-software/g/GlobalArrays.md index b47867e6cf..fdd8570b70 100644 --- a/docs/version-specific/supported-software/g/GlobalArrays.md +++ b/docs/version-specific/supported-software/g/GlobalArrays.md @@ -6,20 +6,16 @@ search: Global Arrays (GA) is a Partitioned Global Address Space (PGAS) programming model -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``5.7`` | | ``intel/2018b`` -``5.7`` | ``-peigs`` | ``intel/2019a`` -``5.7.2`` | ``-peigs`` | ``intel/2019b`` -``5.7.2`` | | ``intel/2019b`` -``5.8`` | | ``intel/2020a`` -``5.8`` | | ``intel/2021a`` -``5.8`` | | ``iomkl/2021a`` -``5.8.1`` | | ``intel/2022a`` -``5.8.2`` | | ``intel/2022a`` -``5.8.2`` | | ``intel/2023a`` +version | toolchain +--------|---------- +``5.8`` | ``intel/2021a`` +``5.8`` | ``iomkl/2021a`` +``5.8.1`` | ``intel/2022a`` +``5.8.2`` | ``intel/2022a`` +``5.8.2`` | ``intel/2023a`` +``5.8.2`` | ``intel/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/Globus-CLI.md b/docs/version-specific/supported-software/g/Globus-CLI.md index f55a91cd0d..cf65c758fc 100644 --- a/docs/version-specific/supported-software/g/Globus-CLI.md +++ b/docs/version-specific/supported-software/g/Globus-CLI.md @@ -10,7 +10,6 @@ A Command Line Wrapper over the Globus SDK for Python, which provides an interfa version | toolchain --------|---------- -``1.11.0`` | ``GCCcore/8.3.0`` ``3.1.1`` | ``GCCcore/10.2.0`` ``3.2.0`` | ``GCCcore/10.3.0`` ``3.6.0`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/g/GlobusConnectPersonal.md b/docs/version-specific/supported-software/g/GlobusConnectPersonal.md deleted file mode 100644 index f192980c21..0000000000 --- a/docs/version-specific/supported-software/g/GlobusConnectPersonal.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GlobusConnectPersonal - -Globus Connect Personal turns your laptop or other personal computer into a Globus endpoint with a just a few clicks. With Globus Connect Personal you can share and transfer files to/from a local machine—campus server, desktop computer or laptop—even if it's behind a firewall and you don't have administrator privileges. - -*homepage*: - -version | toolchain ---------|---------- -``2.3.6`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GnuTLS.md b/docs/version-specific/supported-software/g/GnuTLS.md index 3114e8e7fe..72481f2aa3 100644 --- a/docs/version-specific/supported-software/g/GnuTLS.md +++ b/docs/version-specific/supported-software/g/GnuTLS.md @@ -6,13 +6,10 @@ search: GnuTLS is a secure communications library implementing the SSL, TLS and DTLS protocols and technologies around them. It provides a simple C language application programming interface (API) to access the secure communications protocols as well as APIs to parse and write X.509, PKCS #12, OpenPGP and other required structures. It is aimed to be portable and efficient with focus on security and interoperability. -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.3.21`` | ``intel/2016a`` -``3.4.11`` | ``foss/2016a`` -``3.4.7`` | ``GNU/4.9.3-2.25`` ``3.7.2`` | ``GCCcore/10.3.0`` ``3.7.3`` | ``GCCcore/11.2.0`` ``3.7.8`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/g/Go.md b/docs/version-specific/supported-software/g/Go.md index 30b1420e0d..a5fe1b567d 100644 --- a/docs/version-specific/supported-software/g/Go.md +++ b/docs/version-specific/supported-software/g/Go.md @@ -10,10 +10,6 @@ Go is an open source programming language that makes it easy to build simple, r version | toolchain --------|---------- -``1.11.5`` | ``system`` -``1.12.1`` | ``GCCcore/7.3.0`` -``1.12`` | ``system`` -``1.13.1`` | ``system`` ``1.14.1`` | ``system`` ``1.14`` | ``system`` ``1.16.3`` | ``system`` @@ -23,15 +19,12 @@ version | toolchain ``1.17.6`` | ``system`` ``1.18.1`` | ``system`` ``1.18.3`` | ``system`` -``1.2.1`` | ``GCC/4.8.2`` ``1.20.4`` | ``system`` ``1.21.1`` | ``system`` ``1.21.2`` | ``system`` ``1.21.6`` | ``system`` ``1.22.1`` | ``system`` -``1.4.2`` | ``GCC/4.8.4`` -``1.5`` | ``GCC/4.8.4`` -``1.8.1`` | ``system`` +``1.23.6`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GraPhlAn.md b/docs/version-specific/supported-software/g/GraPhlAn.md deleted file mode 100644 index 20d678306d..0000000000 --- a/docs/version-specific/supported-software/g/GraPhlAn.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GraPhlAn - -GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees. It focuses on concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.3`` | ``-Python-2.7.16`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/Grace.md b/docs/version-specific/supported-software/g/Grace.md index 4dbaff9b15..f020411eb1 100644 --- a/docs/version-specific/supported-software/g/Grace.md +++ b/docs/version-specific/supported-software/g/Grace.md @@ -4,23 +4,14 @@ search: --- # Grace -Grace is a WYSIWYG 2D plotting tool for X Windows System and Motif. +Grace is a WYSIWYG tool to make two-dimensional plots of numerical data. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``5.1.25`` | | ``foss/2016a`` -``5.1.25`` | ``-5build1`` | ``foss/2017b`` -``5.1.25`` | ``-5build1`` | ``foss/2018a`` -``5.1.25`` | ``-5build1`` | ``foss/2019a`` -``5.1.25`` | ``-5build1`` | ``foss/2019b`` -``5.1.25`` | | ``foss/2021a`` -``5.1.25`` | | ``foss/2021b`` -``5.1.25`` | | ``intel/2016a`` -``5.1.25`` | ``-5build1`` | ``intel/2017b`` -``5.1.25`` | ``-5build1`` | ``intel/2019a`` -``5.1.25`` | ``-5build1`` | ``intel/2019b`` +version | toolchain +--------|---------- +``5.1.25`` | ``foss/2021a`` +``5.1.25`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/Gradio.md b/docs/version-specific/supported-software/g/Gradio.md new file mode 100644 index 0000000000..8d74d38e77 --- /dev/null +++ b/docs/version-specific/supported-software/g/Gradio.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Gradio + +Gradio is an open-source Python package that allows you to quickly build a demo or web application for your machine learning model, API, or any arbitrary Python function. + +*homepage*: + +version | toolchain +--------|---------- +``4.19.0`` | ``gfbf/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/g/Gradle.md b/docs/version-specific/supported-software/g/Gradle.md index fd491d0059..1c2d4c28f9 100644 --- a/docs/version-specific/supported-software/g/Gradle.md +++ b/docs/version-specific/supported-software/g/Gradle.md @@ -10,7 +10,6 @@ Complete Gradle install. From mobile apps to microservices, from small startups version | versionsuffix | toolchain --------|---------------|---------- -``4.5.1`` | | ``system`` ``6.1.1`` | | ``system`` ``6.9.1`` | | ``system`` ``8.6`` | ``-Java-17`` | ``system`` diff --git a/docs/version-specific/supported-software/g/GraphAligner.md b/docs/version-specific/supported-software/g/GraphAligner.md new file mode 100644 index 0000000000..d6e3422609 --- /dev/null +++ b/docs/version-specific/supported-software/g/GraphAligner.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# GraphAligner + +Seed-and-extend program for aligning long error-prone reads to genome graphs. + +*homepage*: + +version | toolchain +--------|---------- +``1.0.20`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/g/GraphMap.md b/docs/version-specific/supported-software/g/GraphMap.md deleted file mode 100644 index 0967100a9c..0000000000 --- a/docs/version-specific/supported-software/g/GraphMap.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GraphMap - -A highly sensitive and accurate mapper for long, error-prone reads - -*homepage*: - -version | toolchain ---------|---------- -``0.5.2`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GraphMap2.md b/docs/version-specific/supported-software/g/GraphMap2.md deleted file mode 100644 index 181de0193d..0000000000 --- a/docs/version-specific/supported-software/g/GraphMap2.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GraphMap2 - -A highly sensitive and accurate mapper for long, error-prone reads - -*homepage*: - -version | toolchain ---------|---------- -``0.6.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/Graphene.md b/docs/version-specific/supported-software/g/Graphene.md index c0906a044c..41f821dc8b 100644 --- a/docs/version-specific/supported-software/g/Graphene.md +++ b/docs/version-specific/supported-software/g/Graphene.md @@ -14,7 +14,7 @@ version | toolchain ``1.10.8`` | ``GCCcore/12.2.0`` ``1.10.8`` | ``GCCcore/12.3.0`` ``1.10.8`` | ``GCCcore/13.2.0`` -``1.6.0`` | ``intel/2017a`` +``1.10.8`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GraphicsMagick.md b/docs/version-specific/supported-software/g/GraphicsMagick.md index 4f99a467d0..906e4600ed 100644 --- a/docs/version-specific/supported-software/g/GraphicsMagick.md +++ b/docs/version-specific/supported-software/g/GraphicsMagick.md @@ -10,16 +10,9 @@ GraphicsMagick is the swiss army knife of image processing. version | toolchain --------|---------- -``1.3.23`` | ``foss/2016a`` -``1.3.23`` | ``intel/2016a`` -``1.3.25`` | ``intel/2016b`` -``1.3.25`` | ``intel/2017a`` -``1.3.28`` | ``foss/2018a`` -``1.3.31`` | ``foss/2018b`` -``1.3.34`` | ``foss/2019a`` -``1.3.34`` | ``foss/2019b`` ``1.3.36`` | ``GCCcore/11.2.0`` ``1.3.36`` | ``foss/2020b`` +``1.3.45`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/Graphviz.md b/docs/version-specific/supported-software/g/Graphviz.md index 3715cb881f..3b5f7c8b20 100644 --- a/docs/version-specific/supported-software/g/Graphviz.md +++ b/docs/version-specific/supported-software/g/Graphviz.md @@ -6,20 +6,11 @@ search: Graphviz is open source graph visualization software. Graph visualization is a way of representing structural information as diagrams of abstract graphs and networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual interfaces for other technical domains. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2.38.0`` | | ``foss/2016b`` -``2.38.0`` | | ``intel/2016b`` -``2.40.1`` | ``-Python-2.7.15`` | ``foss/2018b`` -``2.40.1`` | | ``foss/2018b`` -``2.40.1`` | | ``intel/2018a`` -``2.42.2`` | ``-Java-11`` | ``GCCcore/8.3.0`` -``2.42.2`` | ``-Python-3.7.4`` | ``foss/2019b`` -``2.42.2`` | | ``foss/2019b`` -``2.44.1`` | ``-Java-11-Python-3.8.2`` | ``GCCcore/9.3.0`` -``2.44.1`` | ``-Java-11`` | ``GCCcore/9.3.0`` +``12.2.0`` | | ``GCCcore/13.3.0`` ``2.47.0`` | ``-Java-11`` | ``GCCcore/10.2.0`` ``2.47.2`` | | ``GCCcore/10.3.0`` ``2.50.0`` | | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/g/Greenlet.md b/docs/version-specific/supported-software/g/Greenlet.md index 5fecf5ea3b..6102b6acd7 100644 --- a/docs/version-specific/supported-software/g/Greenlet.md +++ b/docs/version-specific/supported-software/g/Greenlet.md @@ -8,17 +8,14 @@ The greenlet package is a spin-off of Stackless, a version of CPython that suppo *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.4.11`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.4.12`` | ``-Python-2.7.14`` | ``intel/2017b`` -``0.4.9`` | ``-Python-2.7.11`` | ``intel/2016a`` -``0.4.9`` | ``-Python-3.5.1`` | ``intel/2016a`` -``2.0.2`` | | ``GCCcore/11.3.0`` -``2.0.2`` | | ``GCCcore/12.2.0`` -``2.0.2`` | | ``GCCcore/12.3.0`` -``3.0.2`` | | ``GCCcore/12.3.0`` -``3.0.3`` | | ``GCCcore/13.2.0`` +version | toolchain +--------|---------- +``2.0.2`` | ``GCCcore/11.3.0`` +``2.0.2`` | ``GCCcore/12.2.0`` +``2.0.2`` | ``GCCcore/12.3.0`` +``3.0.2`` | ``GCCcore/12.3.0`` +``3.0.3`` | ``GCCcore/13.2.0`` +``3.1.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/Grep.md b/docs/version-specific/supported-software/g/Grep.md deleted file mode 100644 index ef7dc82855..0000000000 --- a/docs/version-specific/supported-software/g/Grep.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Grep - -The grep command searches one or more input files for lines containing a match to a specified pattern. By default, grep prints the matching lines. - -*homepage*: - -version | toolchain ---------|---------- -``2.21`` | ``GCC/4.9.2`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GroIMP.md b/docs/version-specific/supported-software/g/GroIMP.md deleted file mode 100644 index 68096d4b21..0000000000 --- a/docs/version-specific/supported-software/g/GroIMP.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GroIMP - -GroIMP (Growth Grammar-related Interactive Modelling Platform) is a 3D-modelling platform. - -*homepage*: - -version | toolchain ---------|---------- -``1.5`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GromacsWrapper.md b/docs/version-specific/supported-software/g/GromacsWrapper.md deleted file mode 100644 index 675544d88b..0000000000 --- a/docs/version-specific/supported-software/g/GromacsWrapper.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GromacsWrapper - -GromacsWrapper is a python package that wraps system calls to Gromacs tools into thin classes. This allows for fairly seamless integration of the gromacs tools into python scripts. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.8.0`` | ``-Python-3.7.2`` | ``fosscuda/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GtkSourceView.md b/docs/version-specific/supported-software/g/GtkSourceView.md index 0714096b15..1bd8bf8c47 100644 --- a/docs/version-specific/supported-software/g/GtkSourceView.md +++ b/docs/version-specific/supported-software/g/GtkSourceView.md @@ -11,8 +11,6 @@ GtkSourceView is a GNOME library that extends GtkTextView, the standard GTK+ wi version | toolchain --------|---------- ``3.24.11`` | ``GCCcore/10.2.0`` -``3.24.11`` | ``GCCcore/8.2.0`` -``4.4.0`` | ``GCCcore/8.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/Gubbins.md b/docs/version-specific/supported-software/g/Gubbins.md index 185b3483fb..fcf7d955e0 100644 --- a/docs/version-specific/supported-software/g/Gubbins.md +++ b/docs/version-specific/supported-software/g/Gubbins.md @@ -4,13 +4,12 @@ search: --- # Gubbins -Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. Simulations demonstrate the algorithm generates highly accurate reconstructions under realistic models of short-term bacterial evolution, and can be run in only a few hours on alignments of hundreds of bacterial genome sequences. +Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions, which are marked as recombinations, while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. Simulations demonstrate the algorithm generates highly accurate reconstructions under realistic models of short-term bacterial evolution, and can be run in only a few hours on alignments of hundreds of bacterial genome sequences. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.4.0`` | ``system`` ``3.3.5`` | ``foss/2022b`` diff --git a/docs/version-specific/supported-software/g/Guile.md b/docs/version-specific/supported-software/g/Guile.md index b674d6289a..1a728eb798 100644 --- a/docs/version-specific/supported-software/g/Guile.md +++ b/docs/version-specific/supported-software/g/Guile.md @@ -4,30 +4,13 @@ search: --- # Guile -Guile is the GNU Ubiquitous Intelligent Language for Extensions, the official extension language for the GNU operating system. +Guile is the GNU Ubiquitous Intelligent Language for Extensions, the official extension language for the GNU operating system. *homepage*: version | toolchain --------|---------- -``1.8.8`` | ``GCCcore/5.4.0`` -``1.8.8`` | ``GCCcore/6.4.0`` -``1.8.8`` | ``GCCcore/7.3.0`` -``1.8.8`` | ``GCCcore/8.2.0`` -``1.8.8`` | ``GCCcore/8.3.0`` -``1.8.8`` | ``GCCcore/9.3.0`` -``1.8.8`` | ``GNU/4.9.3-2.25`` -``1.8.8`` | ``foss/2016a`` -``1.8.8`` | ``foss/2016b`` -``1.8.8`` | ``foss/2017a`` -``1.8.8`` | ``intel/2016a`` -``1.8.8`` | ``intel/2016b`` -``2.0.11`` | ``GCC/4.9.3-2.25`` -``2.0.11`` | ``foss/2016a`` ``2.0.14`` | ``GCCcore/13.3.0`` -``2.2.2`` | ``GCCcore/6.4.0`` -``2.2.4`` | ``GCCcore/7.3.0`` -``2.2.4`` | ``GCCcore/9.3.0`` ``2.2.7`` | ``GCCcore/10.3.0`` ``3.0.10`` | ``GCCcore/13.3.0`` ``3.0.7`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/g/Gurobi.md b/docs/version-specific/supported-software/g/Gurobi.md index 2217e5b6e5..bda26e2507 100644 --- a/docs/version-specific/supported-software/g/Gurobi.md +++ b/docs/version-specific/supported-software/g/Gurobi.md @@ -8,34 +8,24 @@ The Gurobi Optimizer is a state-of-the-art solver for mathematical programming. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``10.0.1`` | | ``GCCcore/11.3.0`` -``10.0.1`` | | ``GCCcore/12.2.0`` -``11.0.0`` | | ``GCCcore/12.3.0`` -``11.0.2`` | | ``GCCcore/12.3.0`` -``6.5.1`` | | ``system`` -``6.5.2`` | | ``system`` -``7.0.1`` | | ``system`` -``7.5.2`` | ``-Python-3.6.4`` | ``intel/2018a`` -``7.5.2`` | | ``system`` -``8.1.1`` | | ``system`` -``9.0.0`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``9.0.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``9.0.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``9.0.0`` | | ``system`` -``9.0.1`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` -``9.0.1`` | | ``system`` -``9.0.3`` | | ``GCCcore/10.2.0`` -``9.0.3`` | | ``system`` -``9.1.0`` | | ``system`` -``9.1.1`` | | ``GCCcore/10.2.0`` -``9.1.2`` | | ``GCCcore/10.2.0`` -``9.1.2`` | | ``GCCcore/10.3.0`` -``9.1.2`` | | ``system`` -``9.5.0`` | | ``GCCcore/10.3.0`` -``9.5.0`` | | ``GCCcore/11.2.0`` -``9.5.2`` | | ``GCCcore/11.3.0`` +version | toolchain +--------|---------- +``10.0.1`` | ``GCCcore/11.3.0`` +``10.0.1`` | ``GCCcore/12.2.0`` +``11.0.0`` | ``GCCcore/12.3.0`` +``11.0.2`` | ``GCCcore/12.3.0`` +``12.0.0`` | ``GCCcore/13.2.0`` +``9.0.1`` | ``system`` +``9.0.3`` | ``GCCcore/10.2.0`` +``9.0.3`` | ``system`` +``9.1.0`` | ``system`` +``9.1.1`` | ``GCCcore/10.2.0`` +``9.1.2`` | ``GCCcore/10.2.0`` +``9.1.2`` | ``GCCcore/10.3.0`` +``9.1.2`` | ``system`` +``9.5.0`` | ``GCCcore/10.3.0`` +``9.5.0`` | ``GCCcore/11.2.0`` +``9.5.2`` | ``GCCcore/11.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/Gymnasium.md b/docs/version-specific/supported-software/g/Gymnasium.md index 0601d5af29..ca020f2c98 100644 --- a/docs/version-specific/supported-software/g/Gymnasium.md +++ b/docs/version-specific/supported-software/g/Gymnasium.md @@ -8,9 +8,10 @@ Gymnasium is an open source Python library for developing and comparing reinforc *homepage*: -version | toolchain ---------|---------- -``0.29.1`` | ``foss/2023a`` +version | versionsuffix | toolchain +--------|---------------|---------- +``0.29.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``0.29.1`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/g2clib.md b/docs/version-specific/supported-software/g/g2clib.md index ad8f065d65..2f367837da 100644 --- a/docs/version-specific/supported-software/g/g2clib.md +++ b/docs/version-specific/supported-software/g/g2clib.md @@ -10,13 +10,6 @@ Library contains GRIB2 encoder/decoder ('C' version). version | toolchain --------|---------- -``1.6.0`` | ``GCCcore/8.3.0`` -``1.6.0`` | ``GCCcore/9.3.0`` -``1.6.0`` | ``foss/2018b`` -``1.6.0`` | ``intel/2017a`` -``1.6.0`` | ``intel/2017b`` -``1.6.0`` | ``intel/2018a`` -``1.6.0`` | ``intel/2018b`` ``1.6.3`` | ``GCCcore/10.2.0`` ``1.6.3`` | ``GCCcore/10.3.0`` ``1.6.3`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/g/g2lib.md b/docs/version-specific/supported-software/g/g2lib.md index 11d50411db..2fda5d6d41 100644 --- a/docs/version-specific/supported-software/g/g2lib.md +++ b/docs/version-specific/supported-software/g/g2lib.md @@ -6,17 +6,10 @@ search: Library contains GRIB2 encoder/decoder and search/indexing routines. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.4.0`` | ``intel/2017a`` -``1.4.0`` | ``intel/2017b`` -``1.4.0`` | ``intel/2018a`` -``3.1.0`` | ``GCCcore/8.3.0`` -``3.1.0`` | ``GCCcore/9.3.0`` -``3.1.0`` | ``foss/2018b`` -``3.1.0`` | ``intel/2018b`` ``3.2.0`` | ``GCCcore/10.2.0`` ``3.2.0`` | ``GCCcore/10.3.0`` ``3.2.0`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/g/g2log.md b/docs/version-specific/supported-software/g/g2log.md deleted file mode 100644 index 323f864c41..0000000000 --- a/docs/version-specific/supported-software/g/g2log.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# g2log - -g2log, efficient asynchronous logger using C++11 - -*homepage*: - -version | toolchain ---------|---------- -``1.0`` | ``GCCcore/8.3.0`` -``1.0`` | ``foss/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/gSOAP.md b/docs/version-specific/supported-software/g/gSOAP.md deleted file mode 100644 index d0e65017f3..0000000000 --- a/docs/version-specific/supported-software/g/gSOAP.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# gSOAP - -The gSOAP toolkit is a C and C++ software development toolkit for SOAP and REST XML Web services and generic C/C++ XML data bindings. The toolkit analyzes WSDLs and XML schemas (separately or as a combined set) and maps the XML schema types and the SOAP/REST XML messaging protocols to easy-to-use and efficient C and C++ code. It also supports exposing (legacy) C and C++ applications as XML Web services by auto-generating XML serialization code and WSDL specifications. Or you can simply use it to automatically convert XML to/from C and C++ data. The toolkit supports options to generate pure ANSI C or C++ with or without STL. - -*homepage*: - -version | toolchain ---------|---------- -``2.8.100`` | ``GCCcore/8.3.0`` -``2.8.48`` | ``GCCcore/6.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/gap.md b/docs/version-specific/supported-software/g/gap.md index 5abc91ed78..cddd856af6 100644 --- a/docs/version-specific/supported-software/g/gap.md +++ b/docs/version-specific/supported-software/g/gap.md @@ -10,10 +10,8 @@ GAP is a system for computational discrete algebra, with particular emphasis on version | toolchain --------|---------- -``4.11.0`` | ``foss/2019a`` ``4.12.2`` | ``foss/2022a`` ``4.13.0`` | ``foss/2023b`` -``4.9.3`` | ``intel/2018b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/garnett.md b/docs/version-specific/supported-software/g/garnett.md index 0da2c73bd5..3393f0fb73 100644 --- a/docs/version-specific/supported-software/g/garnett.md +++ b/docs/version-specific/supported-software/g/garnett.md @@ -4,7 +4,7 @@ search: --- # garnett -Garnett is a software package that faciliates automated cell type classification from single-cell expression data. +Garnett is a software package that facilitates automated cell type classification from single-cell expression data. *homepage*: diff --git a/docs/version-specific/supported-software/g/gbs2ploidy.md b/docs/version-specific/supported-software/g/gbs2ploidy.md deleted file mode 100644 index 60abd5d510..0000000000 --- a/docs/version-specific/supported-software/g/gbs2ploidy.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# gbs2ploidy - -Inference of Ploidy from (Genotyping-by-Sequencing) GBS Data - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0`` | ``-R-3.4.3`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/gc.md b/docs/version-specific/supported-software/g/gc.md index e32b97affb..e3b577daef 100644 --- a/docs/version-specific/supported-software/g/gc.md +++ b/docs/version-specific/supported-software/g/gc.md @@ -4,19 +4,12 @@ search: --- # gc -The Boehm-Demers-Weiser conservative garbage collector can be used as a garbage collecting replacement for C malloc or C++ new. +The Boehm-Demers-Weiser conservative garbage collector can be used as a garbage collecting replacement for C malloc or C++ new. *homepage*: version | toolchain --------|---------- -``7.4.4`` | ``GCC/4.9.3-2.25`` -``7.4.4`` | ``foss/2016a`` -``7.6.0`` | ``GCCcore/6.4.0`` -``7.6.10`` | ``GCCcore/8.2.0`` -``7.6.12`` | ``GCCcore/8.3.0`` -``7.6.12`` | ``GCCcore/9.3.0`` -``7.6.4`` | ``GCCcore/7.3.0`` ``8.0.4`` | ``GCCcore/10.3.0`` ``8.2.0`` | ``GCCcore/11.2.0`` ``8.2.2`` | ``GCCcore/10.2.0`` diff --git a/docs/version-specific/supported-software/g/gcccuda.md b/docs/version-specific/supported-software/g/gcccuda.md index 51ed14f371..11a182d097 100644 --- a/docs/version-specific/supported-software/g/gcccuda.md +++ b/docs/version-specific/supported-software/g/gcccuda.md @@ -10,13 +10,6 @@ GNU Compiler Collection (GCC) based compiler toolchain, along with CUDA toolkit. version | toolchain --------|---------- -``2016.08`` | ``system`` -``2017b`` | ``system`` -``2018a`` | ``system`` -``2018b`` | ``system`` -``2019a`` | ``system`` -``2019b`` | ``system`` -``2020a`` | ``system`` ``2020b`` | ``system`` diff --git a/docs/version-specific/supported-software/g/gdbgui.md b/docs/version-specific/supported-software/g/gdbgui.md deleted file mode 100644 index cf76e3a8c7..0000000000 --- a/docs/version-specific/supported-software/g/gdbgui.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# gdbgui - -Browser-based frontend to gdb (gnu debugger). Add breakpoints, view the stack, visualize data structures, and more in C, C++, Go, Rust, and Fortran. Run gdbgui from the terminal and a new tab will open in your browser. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.13.1.2`` | ``-Python-3.7.2`` | ``GCCcore/8.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/gdbm.md b/docs/version-specific/supported-software/g/gdbm.md index 8635b2fce9..a54d318c11 100644 --- a/docs/version-specific/supported-software/g/gdbm.md +++ b/docs/version-specific/supported-software/g/gdbm.md @@ -4,13 +4,12 @@ search: --- # gdbm -GNU dbm (or GDBM, for short) is a library of database functions that use extensible hashing and work similar to the standard UNIX dbm. These routines are provided to a programmer needing to create and manipulate a hashed database. +GNU dbm (or GDBM, for short) is a library of database functions that use extensible hashing and work similar to the standard UNIX dbm. These routines are provided to a programmer needing to create and manipulate a hashed database. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.18.1`` | ``foss/2020a`` ``1.21`` | ``GCCcore/10.2.0`` diff --git a/docs/version-specific/supported-software/g/gdc-client.md b/docs/version-specific/supported-software/g/gdc-client.md index 62b8e75c90..1a6fe2929c 100644 --- a/docs/version-specific/supported-software/g/gdc-client.md +++ b/docs/version-specific/supported-software/g/gdc-client.md @@ -4,17 +4,13 @@ search: --- # gdc-client -The gdc-client provides several convenience functions over the GDC API which provides general download/upload via HTTPS. +The gdc-client provides several convenience functions over the GDC API which provides general download/upload via HTTPS. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.3.0`` | ``-Python-2.7.14`` | ``foss/2018a`` -``1.3.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.3.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``1.6.0`` | | ``GCCcore/10.2.0`` +version | toolchain +--------|---------- +``1.6.0`` | ``GCCcore/10.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gdist.md b/docs/version-specific/supported-software/g/gdist.md deleted file mode 100644 index 02d0ce9631..0000000000 --- a/docs/version-specific/supported-software/g/gdist.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# gdist - -The gdist module is a Cython interface to a C++ library (http://code.google.com/p/geodesic/) for computing geodesic distance which is the length of shortest line between two vertices on a triangulated mesh in three dimensions, such that the line lies on the surface. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.3`` | ``-Python-2.7.11`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/gearshifft.md b/docs/version-specific/supported-software/g/gearshifft.md deleted file mode 100644 index 3a9cb53eca..0000000000 --- a/docs/version-specific/supported-software/g/gearshifft.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# gearshifft - -Benchmark Suite for Heterogenuous FFT Implementations - -*homepage*: - -version | toolchain ---------|---------- -``0.4.0`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/gemmi.md b/docs/version-specific/supported-software/g/gemmi.md index e4c5314d17..806fe5a90a 100644 --- a/docs/version-specific/supported-software/g/gemmi.md +++ b/docs/version-specific/supported-software/g/gemmi.md @@ -4,7 +4,7 @@ search: --- # gemmi -Gemmi is a library, accompanied by a set of programs, developed primarily for use in macromolecular crystallography (MX). For working with: macromolecular models (content of PDB, PDBx/mmCIF and mmJSON files), refinement restraints (CIF files), reflection data (MTZ and mmCIF formats), data on a 3D grid (electron density maps, masks, MRC/CCP4 format) crystallographic symmetry. Parts of this library can be useful in structural bioinformatics (for symmetry- aware analysis of protein models), and in other molecular-structure sciences that use CIF files (we have the fastest open-source CIF parser). +Gemmi is a library, accompanied by a set of programs, developed primarily for use in macromolecular crystallography (MX). For working with: macromolecular models (content of PDB, PDBx/mmCIF and mmJSON files), refinement restraints (CIF files), reflection data (MTZ and mmCIF formats), data on a 3D grid (electron density maps, masks, MRC/CCP4 format) crystallographic symmetry. Parts of this library can be useful in structural bioinformatics (for symmetry- aware analysis of protein models), and in other molecular-structure sciences that use CIF files (we have the fastest open-source CIF parser). *homepage*: diff --git a/docs/version-specific/supported-software/g/gencore_variant_detection.md b/docs/version-specific/supported-software/g/gencore_variant_detection.md deleted file mode 100644 index f8f999a55b..0000000000 --- a/docs/version-specific/supported-software/g/gencore_variant_detection.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# gencore_variant_detection - -This is a bundled install of many software packages for doing variant detection analysis. - -*homepage*: - -version | toolchain ---------|---------- -``1.0`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/gengetopt.md b/docs/version-specific/supported-software/g/gengetopt.md index 0f6b7cd760..d412399190 100644 --- a/docs/version-specific/supported-software/g/gengetopt.md +++ b/docs/version-specific/supported-software/g/gengetopt.md @@ -14,7 +14,6 @@ version | toolchain ``2.23`` | ``GCCcore/10.3.0`` ``2.23`` | ``GCCcore/11.3.0`` ``2.23`` | ``GCCcore/13.2.0`` -``2.23`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gensim.md b/docs/version-specific/supported-software/g/gensim.md index ada3d950fc..21bf2969ac 100644 --- a/docs/version-specific/supported-software/g/gensim.md +++ b/docs/version-specific/supported-software/g/gensim.md @@ -6,15 +6,14 @@ search: Gensim is a Python library for topic modelling, document indexing and similarity retrieval with large corpora. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.13.2`` | ``-Python-2.7.11`` | ``foss/2016a`` -``3.8.3`` | | ``foss/2020b`` -``3.8.3`` | | ``intel/2020b`` -``4.2.0`` | | ``foss/2021a`` -``4.3.2`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``3.8.3`` | ``foss/2020b`` +``3.8.3`` | ``intel/2020b`` +``4.2.0`` | ``foss/2021a`` +``4.3.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/geocube.md b/docs/version-specific/supported-software/g/geocube.md index 37233c57bd..046c89771c 100644 --- a/docs/version-specific/supported-software/g/geocube.md +++ b/docs/version-specific/supported-software/g/geocube.md @@ -6,12 +6,11 @@ search: Tool to convert geopandas vector data into rasterized xarray data. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.0.14`` | ``-Python-3.8.2`` | ``foss/2020a`` -``0.4.3`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``0.4.3`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/geopandas.md b/docs/version-specific/supported-software/g/geopandas.md index 990522c8de..3ebac80511 100644 --- a/docs/version-specific/supported-software/g/geopandas.md +++ b/docs/version-specific/supported-software/g/geopandas.md @@ -8,18 +8,13 @@ GeoPandas is a project to add support for geographic data to pandas objects. It *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.2`` | | ``foss/2021a`` -``0.11.0`` | | ``foss/2021b`` -``0.12.2`` | | ``foss/2022a`` -``0.12.2`` | | ``foss/2022b`` -``0.14.2`` | | ``foss/2023a`` -``0.7.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.7.0`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``0.8.0`` | ``-Python-3.7.2`` | ``foss/2019a`` -``0.8.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``0.8.1`` | ``-Python-3.7.4`` | ``intel/2019b`` +version | toolchain +--------|---------- +``0.10.2`` | ``foss/2021a`` +``0.11.0`` | ``foss/2021b`` +``0.12.2`` | ``foss/2022a`` +``0.12.2`` | ``foss/2022b`` +``0.14.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/geopy.md b/docs/version-specific/supported-software/g/geopy.md index 797c5e456f..927555a8fd 100644 --- a/docs/version-specific/supported-software/g/geopy.md +++ b/docs/version-specific/supported-software/g/geopy.md @@ -4,15 +4,14 @@ search: --- # geopy -geopy is a Python 2 and 3 client for several popular geocoding web services. +geopy is a Python client for several popular geocoding web services. geopy makes it easy for Python developers to locate the coordinates of addresses, cities, countries, and landmarks across the globe using third-party geocoders and other data sources. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.11.0`` | ``-Python-3.6.1`` | ``intel/2017a`` -``2.1.0`` | | ``GCCcore/10.2.0`` -``2.4.1`` | | ``GCCcore/12.3.0`` +version | toolchain +--------|---------- +``2.1.0`` | ``GCCcore/10.2.0`` +``2.4.1`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/georges.md b/docs/version-specific/supported-software/g/georges.md index a3fc2bb3a2..9c4ffe1a18 100644 --- a/docs/version-specific/supported-software/g/georges.md +++ b/docs/version-specific/supported-software/g/georges.md @@ -8,10 +8,9 @@ Georges the lemur opinionated particle accelerator modeling Python package. Also *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2019.2`` | ``-Python-3.7.4`` | ``foss/2019b`` -``2019.2`` | | ``foss/2021a`` +version | toolchain +--------|---------- +``2019.2`` | ``foss/2021a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gettext.md b/docs/version-specific/supported-software/g/gettext.md index 00e38514a4..4bc02248b9 100644 --- a/docs/version-specific/supported-software/g/gettext.md +++ b/docs/version-specific/supported-software/g/gettext.md @@ -6,48 +6,22 @@ search: GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.18.2`` | | ``system`` -``0.19.4`` | | ``GCC/4.9.2`` -``0.19.4`` | | ``system`` -``0.19.6`` | | ``GNU/4.9.3-2.25`` -``0.19.6`` | | ``foss/2016a`` -``0.19.6`` | | ``gimkl/2.11.5`` -``0.19.6`` | | ``intel/2016a`` -``0.19.6`` | | ``system`` -``0.19.7`` | | ``foss/2016a`` -``0.19.7`` | | ``intel/2016a`` -``0.19.7`` | | ``system`` -``0.19.8`` | | ``GCCcore/4.9.3`` -``0.19.8`` | | ``GCCcore/5.4.0`` -``0.19.8`` | | ``foss/2016.04`` -``0.19.8`` | | ``foss/2016b`` -``0.19.8`` | | ``intel/2016b`` -``0.19.8.1`` | | ``GCCcore/6.3.0`` -``0.19.8.1`` | ``-libxml2-2.9.7`` | ``GCCcore/6.4.0`` -``0.19.8.1`` | | ``GCCcore/6.4.0`` -``0.19.8.1`` | | ``GCCcore/7.3.0`` -``0.19.8.1`` | | ``GCCcore/8.2.0`` -``0.19.8.1`` | | ``system`` -``0.19.8`` | | ``system`` -``0.20.1`` | | ``GCCcore/8.3.0`` -``0.20.1`` | | ``GCCcore/9.3.0`` -``0.20.1`` | | ``system`` -``0.21`` | | ``GCCcore/10.2.0`` -``0.21`` | | ``GCCcore/10.3.0`` -``0.21`` | | ``GCCcore/11.2.0`` -``0.21`` | | ``GCCcore/11.3.0`` -``0.21.1`` | | ``GCCcore/12.2.0`` -``0.21.1`` | | ``GCCcore/12.3.0`` -``0.21.1`` | | ``system`` -``0.21`` | | ``system`` -``0.22`` | | ``GCCcore/13.2.0`` -``0.22.5`` | | ``GCCcore/13.3.0`` -``0.22.5`` | | ``system`` -``0.22`` | | ``system`` +version | toolchain +--------|---------- +``0.21`` | ``GCCcore/10.2.0`` +``0.21`` | ``GCCcore/10.3.0`` +``0.21`` | ``GCCcore/11.2.0`` +``0.21`` | ``GCCcore/11.3.0`` +``0.21.1`` | ``GCCcore/12.2.0`` +``0.21.1`` | ``GCCcore/12.3.0`` +``0.21.1`` | ``system`` +``0.21`` | ``system`` +``0.22`` | ``GCCcore/13.2.0`` +``0.22.5`` | ``GCCcore/13.3.0`` +``0.22.5`` | ``system`` +``0.22`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gffread.md b/docs/version-specific/supported-software/g/gffread.md index 0144c94994..333fa138f6 100644 --- a/docs/version-specific/supported-software/g/gffread.md +++ b/docs/version-specific/supported-software/g/gffread.md @@ -6,18 +6,14 @@ search: GFF/GTF parsing utility providing format conversions, region filtering, FASTA sequence extraction and more. -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.10.6`` | ``GCCcore/7.3.0`` -``0.11.6`` | ``GCCcore/8.3.0`` -``0.11.6`` | ``GCCcore/9.3.0`` ``0.12.7`` | ``GCCcore/10.3.0`` ``0.12.7`` | ``GCCcore/11.2.0`` ``0.12.7`` | ``GCCcore/12.2.0`` ``0.12.7`` | ``GCCcore/12.3.0`` -``0.9.12`` | ``foss/2016b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gflags.md b/docs/version-specific/supported-software/g/gflags.md index 221b777f0f..cccef54aff 100644 --- a/docs/version-specific/supported-software/g/gflags.md +++ b/docs/version-specific/supported-software/g/gflags.md @@ -4,25 +4,19 @@ search: --- # gflags -The gflags package contains a C++ library that implements commandline flags processing. It includes built-in support for standard types such as string and the ability to define flags in the source file in which they are used. +The gflags package contains a C++ library that implements commandline flags processing. It includes built-in support for standard types such as string and the ability to define flags in the source file in which they are used. *homepage*: version | toolchain --------|---------- -``2.1.2`` | ``foss/2016a`` -``2.2.1`` | ``GCCcore/6.4.0`` -``2.2.1`` | ``intel/2017a`` -``2.2.1`` | ``intel/2017b`` ``2.2.2`` | ``GCCcore/10.2.0`` ``2.2.2`` | ``GCCcore/10.3.0`` ``2.2.2`` | ``GCCcore/11.2.0`` ``2.2.2`` | ``GCCcore/11.3.0`` +``2.2.2`` | ``GCCcore/12.2.0`` ``2.2.2`` | ``GCCcore/12.3.0`` ``2.2.2`` | ``GCCcore/13.3.0`` -``2.2.2`` | ``GCCcore/8.2.0`` -``2.2.2`` | ``GCCcore/8.3.0`` -``2.2.2`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/giac.md b/docs/version-specific/supported-software/g/giac.md index fae85e7948..b4f28a1113 100644 --- a/docs/version-specific/supported-software/g/giac.md +++ b/docs/version-specific/supported-software/g/giac.md @@ -4,7 +4,7 @@ search: --- # giac -Giac is a C++ library, it is the CAS computing kernel. It may be used inside other C++ programs, and also Python, Java and Javascript programs. +Giac is a C++ library, it is the CAS computing kernel. It may be used inside other C++ programs, and also Python, Java and Javascript programs. *homepage*: diff --git a/docs/version-specific/supported-software/g/giflib.md b/docs/version-specific/supported-software/g/giflib.md index a4243e19c9..46c6b6e7a0 100644 --- a/docs/version-specific/supported-software/g/giflib.md +++ b/docs/version-specific/supported-software/g/giflib.md @@ -6,12 +6,10 @@ search: giflib is a library for reading and writing gif images. It is API and ABI compatible with libungif which was in wide use while the LZW compression algorithm was patented. -*homepage*: +*homepage*: version | toolchain --------|---------- -``5.1.4`` | ``GCCcore/7.3.0`` -``5.1.4`` | ``GCCcore/8.2.0`` ``5.2.1`` | ``GCCcore/10.2.0`` ``5.2.1`` | ``GCCcore/10.3.0`` ``5.2.1`` | ``GCCcore/11.2.0`` @@ -20,8 +18,6 @@ version | toolchain ``5.2.1`` | ``GCCcore/12.3.0`` ``5.2.1`` | ``GCCcore/13.2.0`` ``5.2.1`` | ``GCCcore/13.3.0`` -``5.2.1`` | ``GCCcore/8.3.0`` -``5.2.1`` | ``GCCcore/9.3.0`` ``5.2.2`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/g/gifsicle.md b/docs/version-specific/supported-software/g/gifsicle.md index 2c21cb3d9c..2a27c5c834 100644 --- a/docs/version-specific/supported-software/g/gifsicle.md +++ b/docs/version-specific/supported-software/g/gifsicle.md @@ -4,13 +4,12 @@ search: --- # gifsicle -Gifsicle is a command-line tool for creating, editing, and getting information about GIF images and animations. Making a GIF animation with gifsicle is easy. +Gifsicle is a command-line tool for creating, editing, and getting information about GIF images and animations. Making a GIF animation with gifsicle is easy. *homepage*: version | toolchain --------|---------- -``1.92`` | ``GCCcore/8.2.0`` ``1.93`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/g/gimkl.md b/docs/version-specific/supported-software/g/gimkl.md deleted file mode 100644 index 62475eea15..0000000000 --- a/docs/version-specific/supported-software/g/gimkl.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# gimkl - -GNU Compiler Collection (GCC) based compiler toolchain, next to Intel MPI and Intel MKL (BLAS, (Sca)LAPACK, FFTW). - -*homepage*: <(none)> - -version | toolchain ---------|---------- -``2.11.5`` | ``system`` -``2017a`` | ``system`` -``2018b`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/gimpi.md b/docs/version-specific/supported-software/g/gimpi.md deleted file mode 100644 index b23d32febd..0000000000 --- a/docs/version-specific/supported-software/g/gimpi.md +++ /dev/null @@ -1,21 +0,0 @@ ---- -search: - boost: 0.5 ---- -# gimpi - -GNU Compiler Collection (GCC) based compiler toolchain, next to Intel MPI. - -*homepage*: <(none)> - -version | toolchain ---------|---------- -``2.11.5`` | ``system`` -``2017a`` | ``system`` -``2017b`` | ``system`` -``2018a`` | ``system`` -``2018b`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/gimpic.md b/docs/version-specific/supported-software/g/gimpic.md deleted file mode 100644 index 4d8f5dcad7..0000000000 --- a/docs/version-specific/supported-software/g/gimpic.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# gimpic - -GNU Compiler Collection (GCC) based compiler toolchain along with CUDA toolkit, including IntelMPI for MPI support with CUDA features enabled. - -*homepage*: <(none)> - -version | toolchain ---------|---------- -``2017b`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/giolf.md b/docs/version-specific/supported-software/g/giolf.md deleted file mode 100644 index a4d4c1f354..0000000000 --- a/docs/version-specific/supported-software/g/giolf.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# giolf - -GNU Compiler Collection (GCC) based compiler toolchain, including IntelMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. - -*homepage*: <(none)> - -version | toolchain ---------|---------- -``2017b`` | ``system`` -``2018a`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/giolfc.md b/docs/version-specific/supported-software/g/giolfc.md deleted file mode 100644 index 8107c117b3..0000000000 --- a/docs/version-specific/supported-software/g/giolfc.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# giolfc - -GCC based compiler toolchain __with CUDA support__, and including IntelMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. - -*homepage*: <(none)> - -version | toolchain ---------|---------- -``2017b`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/git-annex.md b/docs/version-specific/supported-software/g/git-annex.md index 0940ff9488..1352449024 100644 --- a/docs/version-specific/supported-software/g/git-annex.md +++ b/docs/version-specific/supported-software/g/git-annex.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``10.20230802`` | ``GCCcore/12.2.0`` ``10.20230802`` | ``GCCcore/12.3.0`` +``10.20240531`` | ``GCCcore/13.2.0`` ``10.20240731`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/g/git-lfs.md b/docs/version-specific/supported-software/g/git-lfs.md index 1ce4b5a617..be4531e6c5 100644 --- a/docs/version-specific/supported-software/g/git-lfs.md +++ b/docs/version-specific/supported-software/g/git-lfs.md @@ -4,15 +4,13 @@ search: --- # git-lfs -Git Large File Storage (LFS) replaces large files such as audio samples, videos, datasets, and graphics with text pointers inside Git, while storing the file contents on a remote server like GitHub.com or GitHub Enterprise. +Git Large File Storage (LFS) replaces large files such as audio samples, videos, datasets, and graphics with text pointers inside Git, while storing the file contents on a remote server like GitHub.com -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.1.1`` | ``system`` ``2.11.0`` | ``system`` -``2.7.1`` | ``system`` ``3.2.0`` | ``system`` ``3.4.0`` | ``system`` ``3.4.1`` | ``system`` diff --git a/docs/version-specific/supported-software/g/git.md b/docs/version-specific/supported-software/g/git.md index e2e5e1c798..1023c24354 100644 --- a/docs/version-specific/supported-software/g/git.md +++ b/docs/version-specific/supported-software/g/git.md @@ -6,33 +6,18 @@ search: Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.8.5.6`` | | ``GCC/4.9.2`` -``2.12.2`` | | ``foss/2016b`` -``2.13.1`` | | ``foss/2016b`` -``2.14.1`` | | ``GCCcore/6.4.0`` -``2.16.1`` | | ``foss/2018a`` -``2.18.0`` | | ``GCCcore/7.3.0`` -``2.19.1`` | | ``GCCcore/7.3.0`` -``2.2.2`` | | ``GCC/4.9.2`` -``2.21.0`` | ``-nodocs`` | ``GCCcore/8.2.0`` -``2.21.0`` | | ``GCCcore/8.2.0`` -``2.23.0`` | ``-nodocs`` | ``GCCcore/8.3.0`` -``2.23.0`` | | ``GCCcore/8.3.0`` -``2.23.0`` | ``-nodocs`` | ``GCCcore/9.3.0`` ``2.28.0`` | ``-nodocs`` | ``GCCcore/10.2.0`` ``2.32.0`` | ``-nodocs`` | ``GCCcore/10.3.0`` ``2.33.1`` | ``-nodocs`` | ``GCCcore/11.2.0`` ``2.36.0`` | ``-nodocs`` | ``GCCcore/11.3.0`` ``2.38.1`` | ``-nodocs`` | ``GCCcore/12.2.0`` -``2.4.1`` | | ``GCC/4.9.2`` ``2.41.0`` | ``-nodocs`` | ``GCCcore/12.3.0`` ``2.42.0`` | | ``GCCcore/13.2.0`` ``2.45.1`` | | ``GCCcore/13.3.0`` -``2.8.0`` | | ``foss/2016a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/glew.md b/docs/version-specific/supported-software/g/glew.md index 76d6a6c51d..40bf79eb4d 100644 --- a/docs/version-specific/supported-software/g/glew.md +++ b/docs/version-specific/supported-software/g/glew.md @@ -12,10 +12,6 @@ version | versionsuffix | toolchain --------|---------------|---------- ``2.1.0`` | | ``GCCcore/10.2.0`` ``2.1.0`` | | ``GCCcore/10.3.0`` -``2.1.0`` | | ``GCCcore/8.2.0`` -``2.1.0`` | | ``GCCcore/8.3.0`` -``2.1.0`` | | ``GCCcore/9.3.0`` -``2.1.0`` | | ``foss/2018b`` ``2.2.0`` | ``-egl`` | ``GCCcore/10.2.0`` ``2.2.0`` | ``-glx`` | ``GCCcore/10.2.0`` ``2.2.0`` | ``-osmesa`` | ``GCCcore/10.2.0`` @@ -24,6 +20,7 @@ version | versionsuffix | toolchain ``2.2.0`` | ``-osmesa`` | ``GCCcore/11.2.0`` ``2.2.0`` | ``-egl`` | ``GCCcore/11.3.0`` ``2.2.0`` | ``-osmesa`` | ``GCCcore/11.3.0`` +``2.2.0`` | ``-egl`` | ``GCCcore/12.2.0`` ``2.2.0`` | ``-egl`` | ``GCCcore/12.3.0`` ``2.2.0`` | ``-osmesa`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/glib-networking.md b/docs/version-specific/supported-software/g/glib-networking.md index 8fa9d12691..5124320df2 100644 --- a/docs/version-specific/supported-software/g/glib-networking.md +++ b/docs/version-specific/supported-software/g/glib-networking.md @@ -13,6 +13,7 @@ version | toolchain ``2.68.1`` | ``GCCcore/10.3.0`` ``2.72.1`` | ``GCCcore/11.2.0`` ``2.72.1`` | ``GCCcore/11.3.0`` +``2.72.1`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/glibc.md b/docs/version-specific/supported-software/g/glibc.md deleted file mode 100644 index 42ca16bb8d..0000000000 --- a/docs/version-specific/supported-software/g/glibc.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# glibc - -The GNU C Library project provides the core libraries for the GNU system and GNU/Linux systems, as well as many other systems that use Linux as the kernel. - -*homepage*: - -version | toolchain ---------|---------- -``2.17`` | ``GCCcore/6.4.0`` -``2.26`` | ``GCCcore/6.4.0`` -``2.30`` | ``GCCcore/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/glog.md b/docs/version-specific/supported-software/g/glog.md index f21adc03d0..1ecdda4a5d 100644 --- a/docs/version-specific/supported-software/g/glog.md +++ b/docs/version-specific/supported-software/g/glog.md @@ -10,15 +10,9 @@ A C++ implementation of the Google logging module. version | toolchain --------|---------- -``0.3.4`` | ``foss/2016a`` -``0.3.5`` | ``GCCcore/6.4.0`` -``0.3.5`` | ``intel/2017a`` -``0.3.5`` | ``intel/2017b`` -``0.4.0`` | ``GCCcore/8.2.0`` -``0.4.0`` | ``GCCcore/8.3.0`` -``0.4.0`` | ``GCCcore/9.3.0`` ``0.5.0`` | ``GCCcore/10.2.0`` ``0.6.0`` | ``GCCcore/11.3.0`` +``0.6.0`` | ``GCCcore/12.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/glproto.md b/docs/version-specific/supported-software/g/glproto.md deleted file mode 100644 index 6959ee7264..0000000000 --- a/docs/version-specific/supported-software/g/glproto.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# glproto - -X protocol and ancillary headers - -*homepage*: - -version | toolchain ---------|---------- -``1.4.17`` | ``foss/2016a`` -``1.4.17`` | ``gimkl/2.11.5`` -``1.4.17`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/gmpich.md b/docs/version-specific/supported-software/g/gmpich.md index 21b1f8e39e..9b1c66e206 100644 --- a/docs/version-specific/supported-software/g/gmpich.md +++ b/docs/version-specific/supported-software/g/gmpich.md @@ -10,8 +10,6 @@ gcc and GFortran based compiler toolchain, including MPICH for MPI support. version | toolchain --------|---------- -``2016a`` | ``system`` -``2017.08`` | ``system`` ``2024.06`` | ``system`` diff --git a/docs/version-specific/supported-software/g/gmpolf.md b/docs/version-specific/supported-software/g/gmpolf.md deleted file mode 100644 index f9d33dca96..0000000000 --- a/docs/version-specific/supported-software/g/gmpolf.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# gmpolf - -gcc and GFortran based compiler toolchain, MPICH for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. - -*homepage*: <(none)> - -version | toolchain ---------|---------- -``2016a`` | ``system`` -``2017.10`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/gmpy2.md b/docs/version-specific/supported-software/g/gmpy2.md index 415d37c0a8..ec4460b147 100644 --- a/docs/version-specific/supported-software/g/gmpy2.md +++ b/docs/version-specific/supported-software/g/gmpy2.md @@ -8,30 +8,19 @@ GMP/MPIR, MPFR, and MPC interface to Python 2.6+ and 3.x *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0.8`` | ``-Python-2.7.14`` | ``foss/2017b`` -``2.0.8`` | ``-Python-3.6.3`` | ``foss/2017b`` -``2.0.8`` | ``-Python-2.7.13`` | ``intel/2017a`` -``2.0.8`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.0.8`` | ``-Python-3.6.3`` | ``intel/2017b`` -``2.1.0b1`` | ``-Python-2.7.14`` | ``foss/2017b`` -``2.1.0b1`` | ``-Python-3.6.3`` | ``foss/2017b`` -``2.1.0b1`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.1.0b1`` | ``-Python-3.6.3`` | ``intel/2017b`` -``2.1.0b4`` | | ``GCC/8.3.0`` -``2.1.0b5`` | | ``GCC/10.2.0`` -``2.1.0b5`` | | ``GCC/10.3.0`` -``2.1.0b5`` | | ``GCC/9.3.0`` -``2.1.0b5`` | | ``iccifort/2020.4.304`` -``2.1.2`` | | ``GCC/11.2.0`` -``2.1.2`` | | ``GCC/11.3.0`` -``2.1.2`` | | ``intel-compilers/2021.4.0`` -``2.1.2`` | | ``intel-compilers/2022.1.0`` -``2.1.5`` | | ``GCC/12.2.0`` -``2.1.5`` | | ``GCC/12.3.0`` -``2.1.5`` | | ``GCC/13.2.0`` -``2.2.0`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``2.1.0b5`` | ``GCC/10.2.0`` +``2.1.0b5`` | ``GCC/10.3.0`` +``2.1.0b5`` | ``iccifort/2020.4.304`` +``2.1.2`` | ``GCC/11.2.0`` +``2.1.2`` | ``GCC/11.3.0`` +``2.1.2`` | ``intel-compilers/2021.4.0`` +``2.1.2`` | ``intel-compilers/2022.1.0`` +``2.1.5`` | ``GCC/12.2.0`` +``2.1.5`` | ``GCC/12.3.0`` +``2.1.5`` | ``GCC/13.2.0`` +``2.2.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gmsh.md b/docs/version-specific/supported-software/g/gmsh.md index 21f8d1abad..c1ea158425 100644 --- a/docs/version-specific/supported-software/g/gmsh.md +++ b/docs/version-specific/supported-software/g/gmsh.md @@ -4,23 +4,15 @@ search: --- # gmsh -Gmsh is a 3D finite element grid generator with a build-in CAD engine and post-processor. +Gmsh is a 3D finite element grid generator with a built-in CAD engine and post-processor. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0.6`` | ``-Python-2.7.14`` | ``foss/2017b`` -``3.0.6`` | ``-Python-3.6.6`` | ``foss/2018b`` -``4.11.1`` | | ``foss/2022a`` -``4.12.2`` | | ``foss/2023a`` -``4.2.2`` | ``-Python-3.6.6`` | ``foss/2018b`` -``4.5.6`` | ``-Python-3.7.4`` | ``foss/2019b`` -``4.5.6`` | ``-Python-2.7.16`` | ``intel/2019b`` -``4.7.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``4.7.1`` | ``-Python-3.8.2`` | ``intel/2020a`` -``4.8.4`` | ``-Python-3.6.4`` | ``foss/2018a`` -``4.9.0`` | | ``foss/2021a`` +version | toolchain +--------|---------- +``4.11.1`` | ``foss/2022a`` +``4.12.2`` | ``foss/2023a`` +``4.9.0`` | ``foss/2021a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gmvapich2.md b/docs/version-specific/supported-software/g/gmvapich2.md deleted file mode 100644 index 73aa47493a..0000000000 --- a/docs/version-specific/supported-software/g/gmvapich2.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# gmvapich2 - -GNU Compiler Collection (GCC) based compiler toolchain, including MVAPICH2 for MPI support. - -*homepage*: <(none)> - -version | toolchain ---------|---------- -``1.7.20`` | ``system`` -``2016a`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/gmvolf.md b/docs/version-specific/supported-software/g/gmvolf.md deleted file mode 100644 index e2f9603093..0000000000 --- a/docs/version-specific/supported-software/g/gmvolf.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# gmvolf - -GNU Compiler Collection (GCC) based compiler toolchain, including MVAPICH2 for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. - -*homepage*: <(none)> - -version | toolchain ---------|---------- -``1.7.20`` | ``system`` -``2016a`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/gnuplot.md b/docs/version-specific/supported-software/g/gnuplot.md index 52508cab00..04dccd7765 100644 --- a/docs/version-specific/supported-software/g/gnuplot.md +++ b/docs/version-specific/supported-software/g/gnuplot.md @@ -10,27 +10,14 @@ Portable interactive, function plotting utility version | toolchain --------|---------- -``5.0.3`` | ``foss/2016a`` -``5.0.3`` | ``intel/2016a`` -``5.0.5`` | ``foss/2016b`` -``5.0.5`` | ``intel/2016b`` -``5.0.6`` | ``intel/2017a`` -``5.2.2`` | ``foss/2017b`` -``5.2.2`` | ``foss/2018a`` -``5.2.2`` | ``intel/2017b`` -``5.2.2`` | ``intel/2018a`` -``5.2.5`` | ``foss/2018b`` -``5.2.6`` | ``GCCcore/8.2.0`` -``5.2.6`` | ``foss/2018b`` -``5.2.6`` | ``fosscuda/2018b`` -``5.2.8`` | ``GCCcore/8.3.0`` -``5.2.8`` | ``GCCcore/9.3.0`` ``5.4.1`` | ``GCCcore/10.2.0`` ``5.4.2`` | ``GCCcore/10.3.0`` ``5.4.2`` | ``GCCcore/11.2.0`` ``5.4.4`` | ``GCCcore/11.3.0`` ``5.4.6`` | ``GCCcore/12.2.0`` ``5.4.8`` | ``GCCcore/12.3.0`` +``6.0.1`` | ``GCCcore/13.2.0`` +``6.0.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gobff.md b/docs/version-specific/supported-software/g/gobff.md index 23afd6f517..f70d9e4aa2 100644 --- a/docs/version-specific/supported-software/g/gobff.md +++ b/docs/version-specific/supported-software/g/gobff.md @@ -8,12 +8,10 @@ GCC and GFortran based compiler toolchain with OpenMPI, BLIS, libFLAME, ScaLAPAC *homepage*: <(none)> -version | versionsuffix | toolchain ---------|---------------|---------- -``2020.06`` | ``-amd`` | ``system`` -``2020.11`` | | ``system`` -``2020b`` | | ``system`` -``2021a`` | | ``system`` +version | toolchain +--------|---------- +``2020b`` | ``system`` +``2021a`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/goblf.md b/docs/version-specific/supported-software/g/goblf.md index 2d686f9827..38b4b140e0 100644 --- a/docs/version-specific/supported-software/g/goblf.md +++ b/docs/version-specific/supported-software/g/goblf.md @@ -10,7 +10,6 @@ GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for M version | toolchain --------|---------- -``2018b`` | ``system`` ``2020b`` | ``system`` diff --git a/docs/version-specific/supported-software/g/gofasta.md b/docs/version-specific/supported-software/g/gofasta.md index ad59645e82..a48f04bace 100644 --- a/docs/version-specific/supported-software/g/gofasta.md +++ b/docs/version-specific/supported-software/g/gofasta.md @@ -4,7 +4,7 @@ search: --- # gofasta -Some functions for dealing with alignments, developed to handle SARS-CoV-2 data as part of the COG-UK project. +Some functions for dealing with alignments, developed to handle SARS-CoV-2 data as part of the COG-UK project. *homepage*: diff --git a/docs/version-specific/supported-software/g/golf.md b/docs/version-specific/supported-software/g/golf.md deleted file mode 100644 index 3af05d2e31..0000000000 --- a/docs/version-specific/supported-software/g/golf.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# golf - -GNU Compiler Collection (GCC) based compiler toolchain, including OpenBLAS (BLAS and LAPACK support) and FFTW. - -*homepage*: <(none)> - -version | toolchain ---------|---------- -``2018a`` | ``system`` -``2020a`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/gomkl.md b/docs/version-specific/supported-software/g/gomkl.md index 44ad3e36cb..3fb094f74a 100644 --- a/docs/version-specific/supported-software/g/gomkl.md +++ b/docs/version-specific/supported-software/g/gomkl.md @@ -10,14 +10,12 @@ GNU Compiler Collection (GCC) based compiler toolchain with OpenMPI and MKL version | toolchain --------|---------- -``2018b`` | ``system`` -``2019a`` | ``system`` -``2020a`` | ``system`` ``2020b`` | ``system`` ``2021a`` | ``system`` ``2021b`` | ``system`` ``2022a`` | ``system`` ``2023a`` | ``system`` +``2023b`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gompi.md b/docs/version-specific/supported-software/g/gompi.md index 3c89aef49c..1bb64077f2 100644 --- a/docs/version-specific/supported-software/g/gompi.md +++ b/docs/version-specific/supported-software/g/gompi.md @@ -8,35 +8,20 @@ GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for M *homepage*: <(none)> -version | versionsuffix | toolchain ---------|---------------|---------- -``2016.04`` | | ``system`` -``2016.06`` | | ``system`` -``2016.07`` | | ``system`` -``2016.09`` | | ``system`` -``2016a`` | | ``system`` -``2016b`` | | ``system`` -``2017a`` | | ``system`` -``2017b`` | | ``system`` -``2018.08`` | | ``system`` -``2018a`` | | ``system`` -``2018b`` | | ``system`` -``2019a`` | | ``system`` -``2019b`` | | ``system`` -``2020a`` | | ``system`` -``2020b`` | | ``system`` -``2021a`` | | ``system`` -``2021b`` | | ``system`` -``2022.05`` | | ``system`` -``2022.10`` | | ``system`` -``2022a`` | | ``system`` -``2022b`` | | ``system`` -``2023.09`` | | ``system`` -``2023a`` | | ``system`` -``2023b`` | | ``system`` -``2024.05`` | | ``system`` -``2024a`` | | ``system`` -``system`` | ``-2.29`` | ``system`` +version | toolchain +--------|---------- +``2020b`` | ``system`` +``2021a`` | ``system`` +``2021b`` | ``system`` +``2022.05`` | ``system`` +``2022.10`` | ``system`` +``2022a`` | ``system`` +``2022b`` | ``system`` +``2023.09`` | ``system`` +``2023a`` | ``system`` +``2023b`` | ``system`` +``2024.05`` | ``system`` +``2024a`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gompic.md b/docs/version-specific/supported-software/g/gompic.md index c76dda251f..4888412bb4 100644 --- a/docs/version-specific/supported-software/g/gompic.md +++ b/docs/version-specific/supported-software/g/gompic.md @@ -10,12 +10,6 @@ GNU Compiler Collection (GCC) based compiler toolchain along with CUDA toolkit, version | toolchain --------|---------- -``2017b`` | ``system`` -``2018a`` | ``system`` -``2018b`` | ``system`` -``2019a`` | ``system`` -``2019b`` | ``system`` -``2020a`` | ``system`` ``2020b`` | ``system`` diff --git a/docs/version-specific/supported-software/g/google-java-format.md b/docs/version-specific/supported-software/g/google-java-format.md deleted file mode 100644 index 4b10480a66..0000000000 --- a/docs/version-specific/supported-software/g/google-java-format.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# google-java-format - -Reformats Java source code to comply with Google Java Style. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.7`` | ``-Java-1.8`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/googletest.md b/docs/version-specific/supported-software/g/googletest.md index afee00c37e..ce3eeca2d0 100644 --- a/docs/version-specific/supported-software/g/googletest.md +++ b/docs/version-specific/supported-software/g/googletest.md @@ -11,8 +11,6 @@ Google's framework for writing C++ tests on a variety of platforms version | toolchain --------|---------- ``1.10.0`` | ``GCCcore/10.2.0`` -``1.10.0`` | ``GCCcore/8.3.0`` -``1.10.0`` | ``GCCcore/9.3.0`` ``1.11.0`` | ``GCCcore/10.3.0`` ``1.11.0`` | ``GCCcore/11.2.0`` ``1.11.0`` | ``GCCcore/11.3.0`` @@ -20,11 +18,6 @@ version | toolchain ``1.13.0`` | ``GCCcore/12.3.0`` ``1.14.0`` | ``GCCcore/13.2.0`` ``1.15.2`` | ``GCCcore/13.3.0`` -``1.8.0`` | ``GCCcore/6.3.0`` -``1.8.0`` | ``GCCcore/6.4.0`` -``1.8.0`` | ``foss/2016b`` -``1.8.0`` | ``intel/2016b`` -``1.8.1`` | ``GCCcore/8.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gperf.md b/docs/version-specific/supported-software/g/gperf.md index 000319ce25..e453b00010 100644 --- a/docs/version-specific/supported-software/g/gperf.md +++ b/docs/version-specific/supported-software/g/gperf.md @@ -4,19 +4,12 @@ search: --- # gperf -GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only. +GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only. -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.0.4`` | ``GCCcore/4.9.3`` -``3.0.4`` | ``GCCcore/5.4.0`` -``3.0.4`` | ``foss/2016a`` -``3.0.4`` | ``gimkl/2.11.5`` -``3.0.4`` | ``intel/2016a`` -``3.0.4`` | ``intel/2016b`` -``3.0.4`` | ``intel/2017a`` ``3.1`` | ``GCCcore/10.2.0`` ``3.1`` | ``GCCcore/10.3.0`` ``3.1`` | ``GCCcore/11.2.0`` @@ -25,11 +18,6 @@ version | toolchain ``3.1`` | ``GCCcore/12.3.0`` ``3.1`` | ``GCCcore/13.2.0`` ``3.1`` | ``GCCcore/13.3.0`` -``3.1`` | ``GCCcore/6.4.0`` -``3.1`` | ``GCCcore/7.3.0`` -``3.1`` | ``GCCcore/8.2.0`` -``3.1`` | ``GCCcore/8.3.0`` -``3.1`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gperftools.md b/docs/version-specific/supported-software/g/gperftools.md index a1bda85860..f50e5ced32 100644 --- a/docs/version-specific/supported-software/g/gperftools.md +++ b/docs/version-specific/supported-software/g/gperftools.md @@ -14,12 +14,7 @@ version | toolchain ``2.12`` | ``GCCcore/12.3.0`` ``2.13`` | ``GCCcore/13.2.0`` ``2.14`` | ``GCCcore/12.2.0`` -``2.5`` | ``foss/2016a`` -``2.5`` | ``intel/2016b`` -``2.6.3`` | ``GCCcore/6.4.0`` -``2.6.3`` | ``GCCcore/7.3.0`` -``2.7.90`` | ``GCCcore/8.3.0`` -``2.8`` | ``GCCcore/9.3.0`` +``2.16`` | ``GCCcore/13.3.0`` ``2.9.1`` | ``GCCcore/10.2.0`` ``2.9.1`` | ``GCCcore/10.3.0`` ``2.9.1`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/g/gpustat.md b/docs/version-specific/supported-software/g/gpustat.md index 89fe8e0e38..e41968f8dc 100644 --- a/docs/version-specific/supported-software/g/gpustat.md +++ b/docs/version-specific/supported-software/g/gpustat.md @@ -8,14 +8,13 @@ dstat-like utilization monitor for NVIDIA GPUs *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.5.0`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` -``0.6.0`` | | ``GCCcore/10.3.0`` -``0.6.0`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``0.6.0`` | | ``gcccuda/2020b`` -``1.0.0b1`` | | ``GCCcore/11.2.0`` -``1.1`` | | ``GCCcore/11.3.0`` +version | toolchain +--------|---------- +``0.6.0`` | ``GCCcore/10.3.0`` +``0.6.0`` | ``gcccuda/2020b`` +``1.0.0b1`` | ``GCCcore/11.2.0`` +``1.1`` | ``GCCcore/11.3.0`` +``1.1.1`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gradunwarp.md b/docs/version-specific/supported-software/g/gradunwarp.md deleted file mode 100644 index 1e53a197ea..0000000000 --- a/docs/version-specific/supported-software/g/gradunwarp.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# gradunwarp - -Gradient Unwarping. This is the Human Connectome Project fork of the no longer maintained original. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.0`` | ``-HCP-Python-2.7.15`` | ``foss/2019a`` -``1.2.0`` | ``-HCP-Python-2.7.15`` | ``foss/2019a`` -``1.2.0`` | ``-HCP-Python-3.7.2`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/graph-tool.md b/docs/version-specific/supported-software/g/graph-tool.md index 2649c5520d..c778a70725 100644 --- a/docs/version-specific/supported-software/g/graph-tool.md +++ b/docs/version-specific/supported-software/g/graph-tool.md @@ -8,12 +8,10 @@ Graph-tool is an efficient Python module for manipulation and statistical analy *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.26`` | ``-Python-3.6.3`` | ``foss/2017b`` -``2.27`` | ``-Python-3.6.6`` | ``foss/2018b`` -``2.55`` | | ``foss/2022a`` -``2.59`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``2.55`` | ``foss/2022a`` +``2.59`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/graphite2.md b/docs/version-specific/supported-software/g/graphite2.md index b64e5c514f..4b75888a82 100644 --- a/docs/version-specific/supported-software/g/graphite2.md +++ b/docs/version-specific/supported-software/g/graphite2.md @@ -18,7 +18,6 @@ version | toolchain ``1.3.14`` | ``GCCcore/12.3.0`` ``1.3.14`` | ``GCCcore/13.2.0`` ``1.3.14`` | ``GCCcore/13.3.0`` -``1.3.14`` | ``GCCcore/8.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/graphviz-python.md b/docs/version-specific/supported-software/g/graphviz-python.md index c06399ca9b..3c8e8ac7b6 100644 --- a/docs/version-specific/supported-software/g/graphviz-python.md +++ b/docs/version-specific/supported-software/g/graphviz-python.md @@ -8,14 +8,10 @@ Simple Python interface for Graphviz *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.20.1`` | | ``GCCcore/11.3.0`` -``0.20.1`` | | ``GCCcore/12.3.0`` -``0.5.1`` | ``-Python-2.7.12`` | ``foss/2016b`` -``0.5.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.5.1`` | ``-Python-3.5.2`` | ``intel/2016b`` -``0.8.2`` | ``-Python-3.6.4`` | ``intel/2018a`` +version | toolchain +--------|---------- +``0.20.1`` | ``GCCcore/11.3.0`` +``0.20.1`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gretl.md b/docs/version-specific/supported-software/g/gretl.md deleted file mode 100644 index c86c7f6ade..0000000000 --- a/docs/version-specific/supported-software/g/gretl.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# gretl - -A cross-platform software package for econometric analysis - -*homepage*: - -version | toolchain ---------|---------- -``2020a`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/grib_api.md b/docs/version-specific/supported-software/g/grib_api.md deleted file mode 100644 index 790085c707..0000000000 --- a/docs/version-specific/supported-software/g/grib_api.md +++ /dev/null @@ -1,21 +0,0 @@ ---- -search: - boost: 0.5 ---- -# grib_api - -The ECMWF GRIB API is an application program interface accessible from C, FORTRAN and Python programs developed for encoding and decoding WMO FM-92 GRIB edition 1 and edition 2 messages. A useful set of command line tools is also provided to give quick access to GRIB messages. - -*homepage*: - -version | toolchain ---------|---------- -``1.16.0`` | ``intel/2016a`` -``1.21.0`` | ``foss/2017a`` -``1.24.0`` | ``foss/2017b`` -``1.24.0`` | ``intel/2017a`` -``1.24.0`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/groff.md b/docs/version-specific/supported-software/g/groff.md index c22d3dda26..475e10d5e5 100644 --- a/docs/version-specific/supported-software/g/groff.md +++ b/docs/version-specific/supported-software/g/groff.md @@ -17,10 +17,9 @@ version | toolchain ``1.22.4`` | ``GCCcore/12.1.0`` ``1.22.4`` | ``GCCcore/12.2.0`` ``1.22.4`` | ``GCCcore/12.3.0`` -``1.22.4`` | ``GCCcore/8.3.0`` -``1.22.4`` | ``GCCcore/9.3.0`` ``1.23.0`` | ``GCCcore/13.2.0`` ``1.23.0`` | ``GCCcore/13.3.0`` +``1.23.0`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/grpcio.md b/docs/version-specific/supported-software/g/grpcio.md index 1a9901b221..34cdf8122d 100644 --- a/docs/version-specific/supported-software/g/grpcio.md +++ b/docs/version-specific/supported-software/g/grpcio.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``1.57.0`` | ``GCCcore/12.2.0`` ``1.57.0`` | ``GCCcore/12.3.0`` +``1.67.1`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gsettings-desktop-schemas.md b/docs/version-specific/supported-software/g/gsettings-desktop-schemas.md deleted file mode 100644 index d57f16e1eb..0000000000 --- a/docs/version-specific/supported-software/g/gsettings-desktop-schemas.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# gsettings-desktop-schemas - -gsettings-desktop-schemas contains a collection of GSettings schemas for settings shared by various components of a desktop. - -*homepage*: - -version | toolchain ---------|---------- -``3.34.0`` | ``GCCcore/8.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/gsport.md b/docs/version-specific/supported-software/g/gsport.md deleted file mode 100644 index 53375d7eb6..0000000000 --- a/docs/version-specific/supported-software/g/gsport.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# gsport - -GSPORT command-line tool for accessing GenomeScan Customer Portal - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.4.2`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/gsw.md b/docs/version-specific/supported-software/g/gsw.md index 7115445088..c5a43893e1 100644 --- a/docs/version-specific/supported-software/g/gsw.md +++ b/docs/version-specific/supported-software/g/gsw.md @@ -4,7 +4,7 @@ search: --- # gsw -This Python implementation of the Thermodynamic Equation of Seawater 2010 (TEOS-10) is based primarily on numpy ufunc wrappers of the GSW-C implementation. This library replaces the original python-gsw pure-python implementation.. The primary reasons for this change are that by building on the C implementation we reduce code duplication and we gain an immediate update to the 75-term equation. Additional benefits include a major increase in speed, a reduction in memory usage, and the inclusion of more functions. The penalty is that a C (or MSVC C++ for Windows) compiler is required to build the package from source. +This Python implementation of the Thermodynamic Equation of Seawater 2010 (TEOS-10) is based primarily on numpy ufunc wrappers of the GSW-C implementation. This library replaces the original python-gsw pure-python implementation.. The primary reasons for this change are that by building on the C implementation we reduce code duplication and we gain an immediate update to the 75-term equation. Additional benefits include a major increase in speed, a reduction in memory usage, and the inclusion of more functions. The penalty is that a C (or MSVC C++ for Windows) compiler is required to build the package from source. *homepage*: diff --git a/docs/version-specific/supported-software/g/guenomu.md b/docs/version-specific/supported-software/g/guenomu.md deleted file mode 100644 index a85e9d78fc..0000000000 --- a/docs/version-specific/supported-software/g/guenomu.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# guenomu - -guenomu is a software written in C that estimates the species tree for a given set of gene families. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2019.07.05`` | ``-mpi`` | ``iimpi/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/gym-pybullet-drones.md b/docs/version-specific/supported-software/g/gym-pybullet-drones.md new file mode 100644 index 0000000000..40357486d1 --- /dev/null +++ b/docs/version-specific/supported-software/g/gym-pybullet-drones.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# gym-pybullet-drones + +PyBullet-based Gym for single and multi-agent reinforcement learning with nano-quadcopters + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``2.0.0-3d7b12e`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``2.0.0-3d7b12e`` | | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/g/gzip.md b/docs/version-specific/supported-software/g/gzip.md index 45aff5349f..bff9b3c88b 100644 --- a/docs/version-specific/supported-software/g/gzip.md +++ b/docs/version-specific/supported-software/g/gzip.md @@ -13,18 +13,12 @@ version | toolchain ``1.10`` | ``GCCcore/10.2.0`` ``1.10`` | ``GCCcore/10.3.0`` ``1.10`` | ``GCCcore/11.2.0`` -``1.10`` | ``GCCcore/8.2.0`` -``1.10`` | ``GCCcore/8.3.0`` -``1.10`` | ``GCCcore/9.3.0`` ``1.12`` | ``GCCcore/11.3.0`` ``1.12`` | ``GCCcore/12.2.0`` ``1.12`` | ``GCCcore/12.3.0`` ``1.13`` | ``GCCcore/13.2.0`` ``1.13`` | ``GCCcore/13.3.0`` -``1.8`` | ``GCCcore/5.4.0`` -``1.8`` | ``GCCcore/6.3.0`` -``1.8`` | ``GCCcore/6.4.0`` -``1.9`` | ``GCCcore/7.3.0`` +``1.13`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/index.md b/docs/version-specific/supported-software/g/index.md index 7b08d8c434..66e765e072 100644 --- a/docs/version-specific/supported-software/g/index.md +++ b/docs/version-specific/supported-software/g/index.md @@ -8,20 +8,14 @@ search: - * [G-PhoCS](G-PhoCS.md) * [g2clib](g2clib.md) * [g2lib](g2lib.md) - * [g2log](g2log.md) - * [Gaia](Gaia.md) * [GAMESS-US](GAMESS-US.md) * [gap](gap.md) - * [GapCloser](GapCloser.md) * [GapFiller](GapFiller.md) * [gappa](gappa.md) * [GAPPadder](GAPPadder.md) - * [GARLI](GARLI.md) * [garnett](garnett.md) - * [GAT](GAT.md) * [GATB-Core](GATB-Core.md) * [GATE](GATE.md) * [GATK](GATK.md) @@ -30,9 +24,7 @@ search: * [gbasis](gbasis.md) * [Gblocks](Gblocks.md) * [GBprocesS](GBprocesS.md) - * [gbs2ploidy](gbs2ploidy.md) * [gc](gc.md) - * [GC3Pie](GC3Pie.md) * [GCC](GCC.md) * [GCCcore](GCCcore.md) * [gcccuda](gcccuda.md) @@ -40,44 +32,33 @@ search: * [GConf](GConf.md) * [gcsfs](gcsfs.md) * [GCTA](GCTA.md) - * [Gctf](Gctf.md) * [GD](GD.md) * [GDAL](GDAL.md) * [GDB](GDB.md) - * [gdbgui](gdbgui.md) * [gdbm](gdbm.md) * [gdc-client](gdc-client.md) - * [GDCHART](GDCHART.md) * [GDCM](GDCM.md) * [GDGraph](GDGraph.md) - * [gdist](gdist.md) * [Gdk-Pixbuf](Gdk-Pixbuf.md) * [GDMA](GDMA.md) * [GDRCopy](GDRCopy.md) * [Gdspy](Gdspy.md) * [Geant4](Geant4.md) * [Geant4-data](Geant4-data.md) - * [gearshifft](gearshifft.md) * [GEGL](GEGL.md) * [GEM](GEM.md) - * [GEM-library](GEM-library.md) * [gemelli](gemelli.md) * [GEMMA](GEMMA.md) * [gemmi](gemmi.md) - * [gencore_variant_detection](gencore_variant_detection.md) * [GeneMark-ET](GeneMark-ET.md) * [GenerativeModels](GenerativeModels.md) * [gengetopt](gengetopt.md) * [GenMap](GenMap.md) - * [Genome_Profiler](Genome_Profiler.md) * [GenomeComb](GenomeComb.md) - * [GenomeMapper](GenomeMapper.md) * [genomepy](genomepy.md) - * [GenomeTester4](GenomeTester4.md) * [GenomeThreader](GenomeThreader.md) * [GenomeTools](GenomeTools.md) * [GenomeWorks](GenomeWorks.md) - * [GenotypeHarmonizer](GenotypeHarmonizer.md) * [genozip](genozip.md) * [gensim](gensim.md) * [geocube](geocube.md) @@ -88,7 +69,6 @@ search: * [GEOS](GEOS.md) * [geosphere](geosphere.md) * [Gerris](Gerris.md) - * [GETORB](GETORB.md) * [GetOrganelle](GetOrganelle.md) * [gettext](gettext.md) * [gexiv2](gexiv2.md) @@ -98,7 +78,6 @@ search: * [gffread](gffread.md) * [gffutils](gffutils.md) * [gflags](gflags.md) - * [GFOLD](GFOLD.md) * [gh](gh.md) * [GHC](GHC.md) * [Ghostscript](Ghostscript.md) @@ -108,58 +87,40 @@ search: * [giflib](giflib.md) * [gifsicle](gifsicle.md) * [GIMIC](GIMIC.md) - * [gimkl](gimkl.md) * [GimmeMotifs](GimmeMotifs.md) * [GIMP](GIMP.md) - * [gimpi](gimpi.md) - * [gimpic](gimpic.md) - * [GIMPS](GIMPS.md) - * [giolf](giolf.md) - * [giolfc](giolfc.md) * [Giotto-Suite](Giotto-Suite.md) * [git](git.md) * [git-annex](git-annex.md) - * [git-extras](git-extras.md) * [git-lfs](git-lfs.md) * [GitPython](GitPython.md) * [Givaro](Givaro.md) * [Giza](Giza.md) - * [GKeyll](GKeyll.md) * [GKlib-METIS](GKlib-METIS.md) * [gkmSVM](gkmSVM.md) * [GL2PS](GL2PS.md) - * [Glade](Glade.md) * [glew](glew.md) * [GLFW](GLFW.md) * [GLI](GLI.md) * [GLib](GLib.md) * [glib-networking](glib-networking.md) - * [glibc](glibc.md) * [GLibmm](GLibmm.md) - * [GLIMMER](GLIMMER.md) * [GlimmerHMM](GlimmerHMM.md) * [GLIMPSE](GLIMPSE.md) * [GLM](GLM.md) * [GLM-AED](GLM-AED.md) * [GlobalArrays](GlobalArrays.md) * [Globus-CLI](Globus-CLI.md) - * [GlobusConnectPersonal](GlobusConnectPersonal.md) * [glog](glog.md) * [GLPK](GLPK.md) - * [glproto](glproto.md) - * [Glucose](Glucose.md) * [GMAP-GSNAP](GMAP-GSNAP.md) * [GMP](GMP.md) * [GMP-ECM](GMP-ECM.md) * [gmpflf](gmpflf.md) * [gmpich](gmpich.md) - * [gmpolf](gmpolf.md) * [gmpy2](gmpy2.md) * [gmsh](gmsh.md) * [GMT](GMT.md) - * [gmvapich2](gmvapich2.md) - * [gmvolf](gmvolf.md) - * [GNU](GNU.md) * [gnupg-bundle](gnupg-bundle.md) * [gnuplot](gnuplot.md) * [GnuTLS](GnuTLS.md) @@ -172,15 +133,13 @@ search: * [GOBNILP](GOBNILP.md) * [Godon](Godon.md) * [gofasta](gofasta.md) - * [golf](golf.md) * [GOMC](GOMC.md) * [gomkl](gomkl.md) * [gompi](gompi.md) * [gompic](gompic.md) - * [google-java-format](google-java-format.md) * [googletest](googletest.md) + * [GOTCHA](GOTCHA.md) * [gotree](gotree.md) - * [GP2C](GP2C.md) * [GPAW](GPAW.md) * [GPAW-setups](GPAW-setups.md) * [gperf](gperf.md) @@ -191,43 +150,31 @@ search: * [GPyOpt](GPyOpt.md) * [GPyTorch](GPyTorch.md) * [Grace](Grace.md) + * [Gradio](Gradio.md) * [Gradle](Gradle.md) - * [gradunwarp](gradunwarp.md) * [graph-tool](graph-tool.md) + * [GraphAligner](GraphAligner.md) * [GraphDB](GraphDB.md) * [Graphene](Graphene.md) * [GraphicsMagick](GraphicsMagick.md) * [graphite2](graphite2.md) - * [GraPhlAn](GraPhlAn.md) - * [GraphMap](GraphMap.md) - * [GraphMap2](GraphMap2.md) * [Graphviz](Graphviz.md) * [graphviz-python](graphviz-python.md) - * [GRASP](GRASP.md) * [GRASP-suite](GRASP-suite.md) * [GRASS](GRASS.md) * [Greenlet](Greenlet.md) - * [Grep](Grep.md) - * [gretl](gretl.md) - * [grib_api](grib_api.md) * [grid](grid.md) * [GRIDSS](GRIDSS.md) - * [GRIT](GRIT.md) - * [GRNBoost](GRNBoost.md) * [groff](groff.md) - * [GroIMP](GroIMP.md) * [GROMACS](GROMACS.md) - * [GromacsWrapper](GromacsWrapper.md) + * [GROMACS-LS](GROMACS-LS.md) * [Groovy](Groovy.md) * [gRPC](gRPC.md) * [grpcio](grpcio.md) * [GSD](GSD.md) * [GSEA](GSEA.md) - * [gsettings-desktop-schemas](gsettings-desktop-schemas.md) * [GSL](GSL.md) - * [gSOAP](gSOAP.md) * [gspell](gspell.md) - * [gsport](gsport.md) * [GST-plugins-bad](GST-plugins-bad.md) * [GST-plugins-base](GST-plugins-base.md) * [GStreamer](GStreamer.md) @@ -240,15 +187,14 @@ search: * [GTK3](GTK3.md) * [GTK4](GTK4.md) * [GtkSourceView](GtkSourceView.md) - * [GTOOL](GTOOL.md) * [GTS](GTS.md) * [Gubbins](Gubbins.md) - * [guenomu](guenomu.md) * [GUIDANCE](GUIDANCE.md) * [Guile](Guile.md) * [GULP](GULP.md) * [Gurobi](Gurobi.md) * [GUSHR](GUSHR.md) + * [gym-pybullet-drones](gym-pybullet-drones.md) * [Gymnasium](Gymnasium.md) * [gzip](gzip.md) diff --git a/docs/version-specific/supported-software/h/H5hut.md b/docs/version-specific/supported-software/h/H5hut.md deleted file mode 100644 index d96cd9ce6b..0000000000 --- a/docs/version-specific/supported-software/h/H5hut.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# H5hut - -HDF5 Utility Toolkit: High-Performance I/O Library for Particle-based Simulations - -*homepage*: - -version | toolchain ---------|---------- -``1.99.13`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/h/HAPGEN2.md b/docs/version-specific/supported-software/h/HAPGEN2.md deleted file mode 100644 index 680b511245..0000000000 --- a/docs/version-specific/supported-software/h/HAPGEN2.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# HAPGEN2 - -'HAPGEN2' simulates case control datasets at SNP markers. - -*homepage*: - -version | toolchain ---------|---------- -``2.2.0`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/h/HBase.md b/docs/version-specific/supported-software/h/HBase.md deleted file mode 100644 index 454f4fbc92..0000000000 --- a/docs/version-specific/supported-software/h/HBase.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# HBase - -Apache HBase. is the Hadoop database, a distributed, scalable, big data store. - -*homepage*: - -version | toolchain ---------|---------- -``1.0.2`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/h/HDBSCAN.md b/docs/version-specific/supported-software/h/HDBSCAN.md index a8b7e81f88..eab6700175 100644 --- a/docs/version-specific/supported-software/h/HDBSCAN.md +++ b/docs/version-specific/supported-software/h/HDBSCAN.md @@ -8,12 +8,11 @@ The hdbscan library is a suite of tools to use unsupervised learning to find clu *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.8.24`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.8.27`` | | ``foss/2021a`` -``0.8.29`` | | ``foss/2022a`` -``0.8.38.post1`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``0.8.27`` | ``foss/2021a`` +``0.8.29`` | ``foss/2022a`` +``0.8.38.post1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/HDDM.md b/docs/version-specific/supported-software/h/HDDM.md index 8f456b81e7..a8929d1898 100644 --- a/docs/version-specific/supported-software/h/HDDM.md +++ b/docs/version-specific/supported-software/h/HDDM.md @@ -4,17 +4,14 @@ search: --- # HDDM -HDDM is a Puthon toolbox for hierarchical Bayesian parameter estimation of the Drift Diffusion Model (via PyMC). +HDDM is a Python toolbox for hierarchical Bayesian parameter estimation of the Drift Diffusion Model (via PyMC). -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.6.1`` | ``-Python-3.6.6`` | ``intel/2018b`` -``0.7.5`` | ``-Python-2.7.16`` | ``intel/2019b`` -``0.7.5`` | ``-Python-3.7.4`` | ``intel/2019b`` -``0.9.9`` | | ``foss/2021b`` -``0.9.9`` | | ``intel/2021b`` +version | toolchain +--------|---------- +``0.9.9`` | ``foss/2021b`` +``0.9.9`` | ``intel/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/HDF-EOS.md b/docs/version-specific/supported-software/h/HDF-EOS.md index a8ae3217db..7503719003 100644 --- a/docs/version-specific/supported-software/h/HDF-EOS.md +++ b/docs/version-specific/supported-software/h/HDF-EOS.md @@ -11,8 +11,6 @@ HDF-EOS libraries are software libraries built on HDF libraries. It supports th version | toolchain --------|---------- ``2.20`` | ``GCCcore/10.2.0`` -``2.20`` | ``GCCcore/7.3.0`` -``2.20`` | ``GCCcore/8.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/HDF-EOS5.md b/docs/version-specific/supported-software/h/HDF-EOS5.md index 64a66d0947..4091487746 100644 --- a/docs/version-specific/supported-software/h/HDF-EOS5.md +++ b/docs/version-specific/supported-software/h/HDF-EOS5.md @@ -10,8 +10,6 @@ HDF-EOS libraries are software libraries built on HDF libraries. It supports th version | toolchain --------|---------- -``1.16`` | ``foss/2018b`` -``1.16`` | ``gompi/2019b`` ``1.16`` | ``gompi/2020b`` diff --git a/docs/version-specific/supported-software/h/HDF.md b/docs/version-specific/supported-software/h/HDF.md index 721d291bfc..61ffc4d153 100644 --- a/docs/version-specific/supported-software/h/HDF.md +++ b/docs/version-specific/supported-software/h/HDF.md @@ -4,29 +4,21 @@ search: --- # HDF -HDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines. +HDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.2.11`` | | ``intel/2016a`` -``4.2.12`` | | ``intel/2017a`` -``4.2.13`` | | ``GCCcore/6.4.0`` -``4.2.13`` | ``-no-netcdf`` | ``intel/2017a`` -``4.2.14`` | | ``GCCcore/6.4.0`` -``4.2.14`` | | ``GCCcore/7.3.0`` -``4.2.14`` | | ``GCCcore/8.2.0`` -``4.2.14`` | | ``GCCcore/8.3.0`` -``4.2.15`` | | ``GCCcore/10.2.0`` -``4.2.15`` | | ``GCCcore/10.3.0`` -``4.2.15`` | | ``GCCcore/11.2.0`` -``4.2.15`` | | ``GCCcore/11.3.0`` -``4.2.15`` | | ``GCCcore/12.2.0`` -``4.2.15`` | | ``GCCcore/9.3.0`` -``4.2.16-2`` | | ``GCCcore/12.3.0`` -``4.2.16-2`` | | ``GCCcore/13.2.0`` -``4.2.16`` | | ``GCCcore/12.3.0`` +version | toolchain +--------|---------- +``4.2.15`` | ``GCCcore/10.2.0`` +``4.2.15`` | ``GCCcore/10.3.0`` +``4.2.15`` | ``GCCcore/11.2.0`` +``4.2.15`` | ``GCCcore/11.3.0`` +``4.2.15`` | ``GCCcore/12.2.0`` +``4.2.16-2`` | ``GCCcore/12.3.0`` +``4.2.16-2`` | ``GCCcore/13.2.0`` +``4.2.16`` | ``GCCcore/12.3.0`` +``4.3.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/HDF5.md b/docs/version-specific/supported-software/h/HDF5.md index b8352d0cab..87bd140a50 100644 --- a/docs/version-specific/supported-software/h/HDF5.md +++ b/docs/version-specific/supported-software/h/HDF5.md @@ -6,46 +6,10 @@ search: HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.10.0-patch1`` | | ``foss/2016b`` -``1.10.0-patch1`` | | ``intel/2016b`` -``1.10.0-patch1`` | | ``intel/2017.01`` -``1.10.0-patch1`` | | ``intel/2017a`` -``1.10.1`` | | ``foss/2017a`` -``1.10.1`` | | ``foss/2017b`` -``1.10.1`` | | ``foss/2018a`` -``1.10.1`` | | ``fosscuda/2017b`` -``1.10.1`` | | ``intel/2017a`` -``1.10.1`` | | ``intel/2017b`` -``1.10.1`` | | ``intel/2018.00`` -``1.10.1`` | | ``intel/2018.01`` -``1.10.1`` | | ``intel/2018a`` -``1.10.1`` | | ``intelcuda/2017b`` -``1.10.1`` | | ``iomkl/2017b`` -``1.10.1`` | | ``iomkl/2018a`` -``1.10.2`` | | ``PGI/18.4-GCC-6.4.0-2.28`` -``1.10.2`` | | ``foss/2018b`` -``1.10.2`` | | ``fosscuda/2018b`` -``1.10.2`` | | ``intel/2018b`` -``1.10.2`` | | ``iomkl/2018b`` -``1.10.5`` | ``-serial`` | ``GCC/8.3.0`` -``1.10.5`` | | ``gompi/2019a`` -``1.10.5`` | | ``gompi/2019b`` -``1.10.5`` | | ``gompic/2019a`` -``1.10.5`` | | ``gompic/2019b`` -``1.10.5`` | | ``iimpi/2019a`` -``1.10.5`` | | ``iimpi/2019b`` -``1.10.5`` | | ``iimpic/2019a`` -``1.10.5`` | | ``iimpic/2019b`` -``1.10.5`` | | ``iompi/2019b`` -``1.10.6`` | | ``gompi/2020a`` -``1.10.6`` | | ``gompic/2020a`` -``1.10.6`` | | ``iimpi/2020a`` -``1.10.6`` | | ``iimpic/2020a`` -``1.10.6`` | | ``iompi/2020a`` ``1.10.7`` | | ``gompi/2020b`` ``1.10.7`` | | ``gompi/2021a`` ``1.10.7`` | | ``gompic/2020b`` @@ -55,8 +19,6 @@ version | versionsuffix | toolchain ``1.10.7`` | | ``iompi/2021a`` ``1.10.8`` | | ``gompi/2021b`` ``1.10.8`` | | ``gompi/2022a`` -``1.12.0`` | | ``gompi/2020a`` -``1.12.0`` | | ``iimpi/2020a`` ``1.12.1`` | | ``gompi/2021a`` ``1.12.1`` | | ``gompi/2021b`` ``1.12.1`` | | ``iimpi/2021b`` @@ -74,41 +36,8 @@ version | versionsuffix | toolchain ``1.14.0`` | | ``iimpi/2023a`` ``1.14.3`` | | ``gompi/2023b`` ``1.14.3`` | | ``iimpi/2023b`` -``1.8.10`` | ``-serial`` | ``GCC/4.8.1`` -``1.8.11`` | ``-serial`` | ``GCC/4.8.1`` -``1.8.12`` | | ``foss/2018b`` -``1.8.12`` | | ``intel/2016b`` -``1.8.13`` | | ``foss/2018b`` -``1.8.16`` | ``-serial`` | ``foss/2016a`` -``1.8.16`` | | ``foss/2016a`` -``1.8.16`` | ``-serial`` | ``gimkl/2.11.5`` -``1.8.16`` | | ``intel/2016.02-GCC-4.9`` -``1.8.16`` | ``-serial`` | ``intel/2016a`` -``1.8.16`` | | ``intel/2016a`` -``1.8.16`` | | ``iomkl/2016.07`` -``1.8.16`` | | ``iomkl/2016.09-GCC-4.9.3-2.25`` -``1.8.17`` | ``-serial`` | ``GCC/5.4.0-2.26`` -``1.8.17`` | ``-serial`` | ``foss/2016a`` -``1.8.17`` | | ``foss/2016a`` -``1.8.17`` | | ``foss/2016b`` -``1.8.17`` | | ``intel/2016a`` -``1.8.17`` | ``-serial`` | ``intel/2016b`` -``1.8.17`` | | ``intel/2016b`` -``1.8.18`` | | ``foss/2016b`` -``1.8.18`` | | ``foss/2017a`` -``1.8.18`` | | ``gimkl/2017a`` -``1.8.18`` | | ``intel/2016b`` -``1.8.18`` | | ``intel/2017.01`` -``1.8.18`` | ``-serial`` | ``intel/2017a`` -``1.8.18`` | | ``intel/2017a`` -``1.8.19`` | | ``foss/2017a`` -``1.8.19`` | | ``foss/2017b`` -``1.8.19`` | | ``intel/2017a`` -``1.8.19`` | | ``intel/2017b`` -``1.8.20`` | | ``foss/2018a`` -``1.8.20`` | | ``gmpolf/2017.10`` -``1.8.20`` | | ``intel/2017b`` -``1.8.20`` | | ``intel/2018a`` +``1.14.5`` | | ``gompi/2024a`` +``1.14.5`` | | ``iimpi/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/HDFView.md b/docs/version-specific/supported-software/h/HDFView.md deleted file mode 100644 index 8aa39ab3f2..0000000000 --- a/docs/version-specific/supported-software/h/HDFView.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# HDFView - -HDFView is a visual tool for browsing and editing HDF4 and HDF5 files. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.14`` | ``-Java-1.8.0_152-centos6`` | ``system`` -``2.14`` | ``-Java-1.8.0_152-centos7`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/h/HEALPix.md b/docs/version-specific/supported-software/h/HEALPix.md deleted file mode 100644 index 749a297958..0000000000 --- a/docs/version-specific/supported-software/h/HEALPix.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# HEALPix - -Hierarchical Equal Area isoLatitude Pixelation of a sphere. - -*homepage*: - -version | toolchain ---------|---------- -``3.50`` | ``GCCcore/7.3.0`` -``3.50`` | ``GCCcore/8.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/h/HF-Datasets.md b/docs/version-specific/supported-software/h/HF-Datasets.md index a6a1d0f13c..90d64e3f17 100644 --- a/docs/version-specific/supported-software/h/HF-Datasets.md +++ b/docs/version-specific/supported-software/h/HF-Datasets.md @@ -10,7 +10,9 @@ The largest hub of ready-to-use datasets for ML models with fast, easy-to-use an version | toolchain --------|---------- +``2.14.4`` | ``gfbf/2022b`` ``2.18.0`` | ``gfbf/2023a`` +``3.1.0`` | ``gfbf/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/HH-suite.md b/docs/version-specific/supported-software/h/HH-suite.md index 6f41450a5c..9c30ffe5e4 100644 --- a/docs/version-specific/supported-software/h/HH-suite.md +++ b/docs/version-specific/supported-software/h/HH-suite.md @@ -4,23 +4,18 @@ search: --- # HH-suite -The HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs). +The HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs). *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0-beta.3`` | | ``intel/2018a`` -``3.2.0`` | | ``foss/2019b`` -``3.2.0`` | | ``fosscuda/2019b`` -``3.3.0`` | | ``foss/2020a`` -``3.3.0`` | | ``gompi/2020b`` -``3.3.0`` | | ``gompi/2021a`` -``3.3.0`` | | ``gompi/2021b`` -``3.3.0`` | | ``gompi/2022a`` -``3.3.0`` | | ``gompi/2023a`` -``3.3.0`` | ``-Python-3.7.4`` | ``gompic/2019b`` -``3.3.0`` | | ``gompic/2020b`` +version | toolchain +--------|---------- +``3.3.0`` | ``gompi/2020b`` +``3.3.0`` | ``gompi/2021a`` +``3.3.0`` | ``gompi/2021b`` +``3.3.0`` | ``gompi/2022a`` +``3.3.0`` | ``gompi/2023a`` +``3.3.0`` | ``gompic/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/HIPS.md b/docs/version-specific/supported-software/h/HIPS.md deleted file mode 100644 index a09bb499e4..0000000000 --- a/docs/version-specific/supported-software/h/HIPS.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# HIPS - -HIPS (Hierarchical Iterative Parallel Solver) is a scientific library that provides an efficient parallel iterative solver for very large sparse linear systems. - -*homepage*: - -version | toolchain ---------|---------- -``1.2b-rc5`` | ``foss/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/h/HISAT2.md b/docs/version-specific/supported-software/h/HISAT2.md index 648c782433..52eaebc13f 100644 --- a/docs/version-specific/supported-software/h/HISAT2.md +++ b/docs/version-specific/supported-software/h/HISAT2.md @@ -6,26 +6,16 @@ search: HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) against the general human population (as well as against a single reference genome). -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.0.3-beta`` | ``intel/2016a`` -``2.0.4`` | ``foss/2016b`` -``2.0.5`` | ``intel/2017a`` -``2.1.0`` | ``foss/2017b`` -``2.1.0`` | ``foss/2018b`` -``2.1.0`` | ``intel/2017a`` -``2.1.0`` | ``intel/2017b`` -``2.1.0`` | ``intel/2018a`` -``2.2.0`` | ``foss/2018b`` -``2.2.1`` | ``foss/2019b`` -``2.2.1`` | ``foss/2020a`` ``2.2.1`` | ``gompi/2020b`` ``2.2.1`` | ``gompi/2021a`` ``2.2.1`` | ``gompi/2021b`` ``2.2.1`` | ``gompi/2022a`` ``2.2.1`` | ``gompi/2022b`` +``2.2.1`` | ``gompi/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/HLAminer.md b/docs/version-specific/supported-software/h/HLAminer.md deleted file mode 100644 index ff1e5879c2..0000000000 --- a/docs/version-specific/supported-software/h/HLAminer.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# HLAminer - -HLAminer is a software for HLA predictions from next-generation shotgun (NGS) sequence read data and supports direct read alignment and targeted de novo assembly of sequence reads. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.4`` | ``-Perl-5.28.0`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/h/HMMER.md b/docs/version-specific/supported-software/h/HMMER.md index b84af1e19b..09632ce83f 100644 --- a/docs/version-specific/supported-software/h/HMMER.md +++ b/docs/version-specific/supported-software/h/HMMER.md @@ -4,29 +4,12 @@ search: --- # HMMER -HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other sequence alignment and database search tools based on older scoring methodology, HMMER aims to be significantly more accurate and more able to detect remote homologs because of the strength of its underlying mathematical models. In the past, this strength came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST. +HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other sequence alignment and database search tools based on older scoring methodology, HMMER aims to be significantly more accurate and more able to detect remote homologs because of the strength of its underlying mathematical models. In the past, this strength came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST. *homepage*: version | toolchain --------|---------- -``3.1b2`` | ``GCC/6.4.0-2.28`` -``3.1b2`` | ``foss/2016a`` -``3.1b2`` | ``foss/2016b`` -``3.1b2`` | ``foss/2018a`` -``3.1b2`` | ``iccifort/2017.4.196-GCC-6.4.0-2.28`` -``3.1b2`` | ``intel/2017a`` -``3.1b2`` | ``intel/2018a`` -``3.2.1`` | ``GCC/8.2.0-2.31.1`` -``3.2.1`` | ``foss/2018b`` -``3.2.1`` | ``gompi/2019b`` -``3.2.1`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``3.2.1`` | ``iimpi/2019b`` -``3.2.1`` | ``intel/2018b`` -``3.3.1`` | ``gompi/2020a`` -``3.3.1`` | ``iimpi/2020a`` -``3.3.2`` | ``gompi/2019b`` -``3.3.2`` | ``gompi/2020a`` ``3.3.2`` | ``gompi/2020b`` ``3.3.2`` | ``gompi/2021a`` ``3.3.2`` | ``gompi/2021b`` @@ -37,6 +20,7 @@ version | toolchain ``3.3.2`` | ``iimpi/2021b`` ``3.4`` | ``gompi/2023a`` ``3.4`` | ``gompi/2023b`` +``3.4`` | ``gompi/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/HMMER2.md b/docs/version-specific/supported-software/h/HMMER2.md index a0780c236b..2684efc7b7 100644 --- a/docs/version-specific/supported-software/h/HMMER2.md +++ b/docs/version-specific/supported-software/h/HMMER2.md @@ -12,7 +12,6 @@ version | toolchain --------|---------- ``2.3.2`` | ``GCC/10.2.0`` ``2.3.2`` | ``GCC/10.3.0`` -``2.3.2`` | ``GCC/8.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/HNOCA-tools.md b/docs/version-specific/supported-software/h/HNOCA-tools.md new file mode 100644 index 0000000000..6eab98f780 --- /dev/null +++ b/docs/version-specific/supported-software/h/HNOCA-tools.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# HNOCA-tools + +Toolbox of the Human Neural Organoid Cell Atlas. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``0.1.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``0.1.1`` | | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/h/HOLE2.md b/docs/version-specific/supported-software/h/HOLE2.md new file mode 100644 index 0000000000..e56d798df1 --- /dev/null +++ b/docs/version-specific/supported-software/h/HOLE2.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# HOLE2 + +HOLE is a program that allows the analysis and visualisation of the pore dimensions of the holes through molecular structures of ion channels + +*homepage*: + +version | toolchain +--------|---------- +``2.3.1`` | ``GCCcore/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/h/HOME.md b/docs/version-specific/supported-software/h/HOME.md deleted file mode 100644 index 6fefd1c6e8..0000000000 --- a/docs/version-specific/supported-software/h/HOME.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# HOME - -HOME (histogram of methylation) is a python package for differential methylation region (DMR) identification. The method uses histogram of methylation features and the linear Support Vector Machine (SVM) to identify DMRs from whole genome bisulfite sequencing (WGBS) data. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.9`` | ``-Python-2.7.13`` | ``foss/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/h/HOMER.md b/docs/version-specific/supported-software/h/HOMER.md index 2684701fbd..3235d57fe2 100644 --- a/docs/version-specific/supported-software/h/HOMER.md +++ b/docs/version-specific/supported-software/h/HOMER.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``4.11`` | ``-R-4.3.2`` | ``foss/2023a`` ``4.11.1`` | | ``foss/2022b`` +``5.1`` | ``-R-4.3.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/HPCG.md b/docs/version-specific/supported-software/h/HPCG.md index 2e262aeb83..6a675cfea1 100644 --- a/docs/version-specific/supported-software/h/HPCG.md +++ b/docs/version-specific/supported-software/h/HPCG.md @@ -10,16 +10,11 @@ The HPCG Benchmark project is an effort to create a more relevant metric for ran version | toolchain --------|---------- -``3.0`` | ``foss/2016b`` -``3.0`` | ``foss/2018b`` -``3.0`` | ``intel/2018b`` -``3.1`` | ``foss/2018b`` ``3.1`` | ``foss/2021a`` ``3.1`` | ``foss/2021b`` ``3.1`` | ``foss/2022a`` ``3.1`` | ``foss/2022b`` ``3.1`` | ``foss/2023a`` -``3.1`` | ``intel/2018b`` ``3.1`` | ``intel/2021a`` ``3.1`` | ``intel/2021b`` ``3.1`` | ``intel/2022a`` diff --git a/docs/version-specific/supported-software/h/HPCX.md b/docs/version-specific/supported-software/h/HPCX.md deleted file mode 100644 index 589a59fdca..0000000000 --- a/docs/version-specific/supported-software/h/HPCX.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# HPCX - -The Mellanox HPC-X Toolkit is a comprehensive MPI and SHMEM/PGAS software suite for high performance computing environments - -*homepage*: - -version | toolchain ---------|---------- -``2.3.0`` | ``GCC/8.2.0-2.31.1`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/h/HPDBSCAN.md b/docs/version-specific/supported-software/h/HPDBSCAN.md index 660531e880..82b9aa2900 100644 --- a/docs/version-specific/supported-software/h/HPDBSCAN.md +++ b/docs/version-specific/supported-software/h/HPDBSCAN.md @@ -10,7 +10,6 @@ Highly parallel density based spatial clustering for application with noise version | toolchain --------|---------- -``20171110`` | ``foss/2017b`` ``20210826`` | ``foss/2020b`` diff --git a/docs/version-specific/supported-software/h/HPL.md b/docs/version-specific/supported-software/h/HPL.md index 39424d244e..074f3af008 100644 --- a/docs/version-specific/supported-software/h/HPL.md +++ b/docs/version-specific/supported-software/h/HPL.md @@ -11,75 +11,6 @@ HPL is a software package that solves a (random) dense linear system in double p version | versionsuffix | toolchain --------|---------------|---------- ``2.0.15`` | ``-CUDA-11.7.0`` | ``intel/2022a`` -``2.1`` | | ``foss/2016.04`` -``2.1`` | | ``foss/2016.06`` -``2.1`` | | ``foss/2016a`` -``2.1`` | | ``foss/2016b`` -``2.1`` | | ``gimkl/2.11.5`` -``2.1`` | | ``gmpolf/2016a`` -``2.1`` | | ``gmvolf/1.7.20`` -``2.1`` | | ``gmvolf/2016a`` -``2.1`` | | ``intel/2016.00`` -``2.1`` | | ``intel/2016.01`` -``2.1`` | | ``intel/2016.02-GCC-4.9`` -``2.1`` | | ``intel/2016.02-GCC-5.3`` -``2.1`` | | ``intel/2016.03-GCC-4.9`` -``2.1`` | | ``intel/2016.03-GCC-5.3`` -``2.1`` | | ``intel/2016.03-GCC-5.4`` -``2.1`` | | ``intel/2016a`` -``2.1`` | | ``intel/2016b`` -``2.1`` | | ``iomkl/2016.07`` -``2.1`` | | ``pomkl/2016.03`` -``2.1`` | | ``pomkl/2016.04`` -``2.1`` | | ``pomkl/2016.09`` -``2.2`` | | ``foss/2016.07`` -``2.2`` | | ``foss/2016.09`` -``2.2`` | | ``foss/2017a`` -``2.2`` | | ``foss/2017b`` -``2.2`` | | ``foss/2018.08`` -``2.2`` | | ``foss/2018a`` -``2.2`` | | ``foss/2018b`` -``2.2`` | | ``fosscuda/2017b`` -``2.2`` | | ``fosscuda/2018a`` -``2.2`` | | ``fosscuda/2018b`` -``2.2`` | | ``gimkl/2018b`` -``2.2`` | | ``giolf/2017b`` -``2.2`` | | ``giolf/2018a`` -``2.2`` | | ``giolfc/2017b`` -``2.2`` | | ``gmpolf/2017.10`` -``2.2`` | | ``goblf/2018b`` -``2.2`` | | ``gomkl/2018b`` -``2.2`` | | ``intel/2017.00`` -``2.2`` | | ``intel/2017.01`` -``2.2`` | | ``intel/2017.02`` -``2.2`` | | ``intel/2017.09`` -``2.2`` | | ``intel/2017a`` -``2.2`` | | ``intel/2017b`` -``2.2`` | | ``intel/2018.00`` -``2.2`` | | ``intel/2018.01`` -``2.2`` | | ``intel/2018.02`` -``2.2`` | | ``intel/2018.04`` -``2.2`` | | ``intel/2018a`` -``2.2`` | | ``intel/2018b`` -``2.2`` | | ``intel/2019.00`` -``2.2`` | | ``intel/2019.01`` -``2.2`` | | ``intelcuda/2016.10`` -``2.2`` | | ``intelcuda/2017b`` -``2.2`` | | ``iomkl/2016.09-GCC-4.9.3-2.25`` -``2.2`` | | ``iomkl/2016.09-GCC-5.4.0-2.26`` -``2.2`` | | ``iomkl/2017.01`` -``2.2`` | | ``iomkl/2017a`` -``2.2`` | | ``iomkl/2017b`` -``2.2`` | | ``iomkl/2018.02`` -``2.2`` | | ``iomkl/2018a`` -``2.2`` | | ``iomkl/2018b`` -``2.2`` | | ``pomkl/2016.09`` -``2.3`` | | ``CrayCCE/19.06`` -``2.3`` | | ``CrayGNU/19.06`` -``2.3`` | | ``CrayIntel/19.06`` -``2.3`` | | ``foss/2019a`` -``2.3`` | | ``foss/2019b`` -``2.3`` | | ``foss/2020a`` ``2.3`` | | ``foss/2020b`` ``2.3`` | | ``foss/2021a`` ``2.3`` | | ``foss/2021b`` @@ -92,27 +23,15 @@ version | versionsuffix | toolchain ``2.3`` | | ``foss/2023b`` ``2.3`` | | ``foss/2024.05`` ``2.3`` | | ``foss/2024a`` -``2.3`` | | ``fosscuda/2019b`` -``2.3`` | | ``fosscuda/2020a`` ``2.3`` | | ``gmpflf/2024.06`` -``2.3`` | | ``gobff/2020.06-amd`` -``2.3`` | | ``gobff/2020.11`` ``2.3`` | | ``gobff/2020b`` ``2.3`` | | ``gobff/2021a`` ``2.3`` | | ``goblf/2020b`` -``2.3`` | | ``gomkl/2019a`` ``2.3`` | | ``gomkl/2020b`` ``2.3`` | | ``gomkl/2021a`` ``2.3`` | | ``gomkl/2022a`` ``2.3`` | | ``iibff/2020b`` -``2.3`` | | ``intel/2019.02`` -``2.3`` | | ``intel/2019.03`` -``2.3`` | | ``intel/2019a`` -``2.3`` | | ``intel/2019b`` -``2.3`` | | ``intel/2020.00`` -``2.3`` | | ``intel/2020.06-impi-18.5`` ``2.3`` | | ``intel/2020.12`` -``2.3`` | | ``intel/2020a`` ``2.3`` | | ``intel/2020b`` ``2.3`` | | ``intel/2021a`` ``2.3`` | | ``intel/2021b`` @@ -127,9 +46,6 @@ version | versionsuffix | toolchain ``2.3`` | | ``intel/2023a`` ``2.3`` | | ``intel/2023b`` ``2.3`` | | ``intel/2024a`` -``2.3`` | | ``intelcuda/2019b`` -``2.3`` | | ``intelcuda/2020a`` -``2.3`` | | ``iomkl/2019.01`` ``2.3`` | | ``iomkl/2021a`` ``2.3`` | | ``iomkl/2021b`` diff --git a/docs/version-specific/supported-software/h/HPX.md b/docs/version-specific/supported-software/h/HPX.md new file mode 100644 index 0000000000..a1020e1cf0 --- /dev/null +++ b/docs/version-specific/supported-software/h/HPX.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# HPX + +HPX (High Performance ParalleX) is a general purpose C++ runtime system for parallel and distributed applications of any scale. + +*homepage*: + +version | toolchain +--------|---------- +``1.10.0`` | ``foss/2024a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/h/HTSeq.md b/docs/version-specific/supported-software/h/HTSeq.md index b00a935cfc..660e4b2def 100644 --- a/docs/version-specific/supported-software/h/HTSeq.md +++ b/docs/version-specific/supported-software/h/HTSeq.md @@ -4,32 +4,16 @@ search: --- # HTSeq -A framework to process and analyze data from high-throughput sequencing (HTS) assays +HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.0`` | ``-Python-2.7.14`` | ``foss/2018a`` -``0.11.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``0.11.0`` | ``-Python-2.7.15`` | ``intel/2018b`` -``0.11.2`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.11.2`` | ``-Python-3.7.2`` | ``foss/2019a`` -``0.11.2`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.11.3`` | | ``foss/2020b`` -``0.11.3`` | | ``foss/2021b`` -``0.6.1p1`` | ``-Python-2.7.11`` | ``foss/2016a`` -``0.6.1p1`` | ``-Python-2.7.12`` | ``foss/2016b`` -``0.6.1p1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.9.1`` | ``-Python-2.7.12`` | ``foss/2016b`` -``0.9.1`` | ``-Python-2.7.14`` | ``foss/2017b`` -``0.9.1`` | ``-Python-3.6.3`` | ``foss/2017b`` -``0.9.1`` | ``-Python-2.7.13`` | ``intel/2017a`` -``0.9.1`` | ``-Python-2.7.14`` | ``intel/2017b`` -``0.9.1`` | ``-Python-3.6.3`` | ``intel/2017b`` -``0.9.1`` | ``-Python-2.7.14`` | ``intel/2018a`` -``2.0.2`` | | ``foss/2022a`` -``2.0.7`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``0.11.3`` | ``foss/2020b`` +``0.11.3`` | ``foss/2021b`` +``2.0.2`` | ``foss/2022a`` +``2.0.7`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/HTSlib.md b/docs/version-specific/supported-software/h/HTSlib.md index b1dbd8369e..04082e7195 100644 --- a/docs/version-specific/supported-software/h/HTSlib.md +++ b/docs/version-specific/supported-software/h/HTSlib.md @@ -8,46 +8,18 @@ A C library for reading/writing high-throughput sequencing data. This package i *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.10.2`` | | ``GCC/8.3.0`` -``1.10.2`` | | ``GCC/9.3.0`` -``1.10.2`` | | ``iccifort/2019.5.281`` -``1.11`` | | ``GCC/10.2.0`` -``1.11`` | | ``iccifort/2020.4.304`` -``1.12`` | | ``GCC/10.2.0`` -``1.12`` | | ``GCC/10.3.0`` -``1.12`` | | ``GCC/9.3.0`` -``1.14`` | | ``GCC/11.2.0`` -``1.15.1`` | | ``GCC/11.3.0`` -``1.17`` | | ``GCC/12.2.0`` -``1.18`` | | ``GCC/12.3.0`` -``1.19.1`` | | ``GCC/13.2.0`` -``1.2.1`` | | ``foss/2016b`` -``1.3`` | | ``foss/2016a`` -``1.3`` | | ``intel/2016a`` -``1.3.1`` | | ``foss/2016a`` -``1.3.1`` | | ``foss/2016b`` -``1.3.1`` | | ``intel/2016b`` -``1.3.2`` | | ``intel/2016b`` -``1.4`` | | ``foss/2016b`` -``1.4`` | | ``intel/2016b`` -``1.4.1`` | | ``foss/2016a`` -``1.4.1`` | | ``intel/2017a`` -``1.6`` | | ``foss/2016b`` -``1.6`` | | ``foss/2017b`` -``1.6`` | | ``intel/2017b`` -``1.7`` | | ``intel/2018a`` -``1.8`` | | ``GCC/6.4.0-2.28`` -``1.8`` | | ``foss/2018a`` -``1.8`` | | ``intel/2018a`` -``1.9`` | | ``GCC/6.4.0-2.28`` -``1.9`` | | ``GCC/8.2.0-2.31.1`` -``1.9`` | | ``foss/2018b`` -``1.9`` | | ``iccifort/2017.4.196-GCC-6.4.0-2.28`` -``1.9`` | | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``1.9`` | | ``intel/2018b`` -``20160107`` | ``-PacBio`` | ``intel/2017a`` +version | toolchain +--------|---------- +``1.11`` | ``GCC/10.2.0`` +``1.11`` | ``iccifort/2020.4.304`` +``1.12`` | ``GCC/10.2.0`` +``1.12`` | ``GCC/10.3.0`` +``1.14`` | ``GCC/11.2.0`` +``1.15.1`` | ``GCC/11.3.0`` +``1.17`` | ``GCC/12.2.0`` +``1.18`` | ``GCC/12.3.0`` +``1.19.1`` | ``GCC/13.2.0`` +``1.21`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/HTSplotter.md b/docs/version-specific/supported-software/h/HTSplotter.md index 399fe2d42f..06de28ea73 100644 --- a/docs/version-specific/supported-software/h/HTSplotter.md +++ b/docs/version-specific/supported-software/h/HTSplotter.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``0.15`` | ``foss/2022a`` ``2.11`` | ``foss/2022b`` +``2.11`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/Hadoop.md b/docs/version-specific/supported-software/h/Hadoop.md index 6bee59b635..e0e52cad61 100644 --- a/docs/version-specific/supported-software/h/Hadoop.md +++ b/docs/version-specific/supported-software/h/Hadoop.md @@ -11,14 +11,6 @@ Hadoop MapReduce by Cloudera version | versionsuffix | toolchain --------|---------------|---------- ``2.10.0`` | ``-native-Java-1.8`` | ``GCCcore/10.2.0`` -``2.10.0`` | ``-native`` | ``GCCcore/8.3.0`` -``2.4.0`` | ``-seagate-722af1-native`` | ``system`` -``2.5.0-cdh5.3.1`` | ``-native`` | ``system`` -``2.6.0-cdh5.12.0`` | ``-native`` | ``system`` -``2.6.0-cdh5.4.5`` | ``-native`` | ``system`` -``2.6.0-cdh5.7.0`` | ``-native`` | ``system`` -``2.6.0-cdh5.8.0`` | ``-native`` | ``system`` -``2.9.2`` | ``-native`` | ``GCCcore/7.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/HarfBuzz.md b/docs/version-specific/supported-software/h/HarfBuzz.md index 0385102e7d..624aea9fdf 100644 --- a/docs/version-specific/supported-software/h/HarfBuzz.md +++ b/docs/version-specific/supported-software/h/HarfBuzz.md @@ -10,24 +10,6 @@ HarfBuzz is an OpenType text shaping engine. version | toolchain --------|---------- -``1.1.3`` | ``foss/2016a`` -``1.1.3`` | ``intel/2016a`` -``1.2.7`` | ``foss/2016a`` -``1.2.7`` | ``intel/2016a`` -``1.3.1`` | ``foss/2016b`` -``1.3.1`` | ``intel/2016b`` -``1.3.1`` | ``intel/2017a`` -``1.5.1`` | ``intel/2017a`` -``1.7.1`` | ``foss/2017b`` -``1.7.1`` | ``intel/2017b`` -``1.7.5`` | ``foss/2018a`` -``1.7.5`` | ``intel/2018a`` -``1.9.0`` | ``fosscuda/2018b`` -``2.2.0`` | ``foss/2018b`` -``2.2.0`` | ``fosscuda/2018b`` -``2.4.0`` | ``GCCcore/8.2.0`` -``2.6.4`` | ``GCCcore/8.3.0`` -``2.6.4`` | ``GCCcore/9.3.0`` ``2.6.7`` | ``GCCcore/10.2.0`` ``2.8.1`` | ``GCCcore/10.3.0`` ``2.8.2`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/h/Harminv.md b/docs/version-specific/supported-software/h/Harminv.md index 4bffe27fab..75b4c8efbb 100644 --- a/docs/version-specific/supported-software/h/Harminv.md +++ b/docs/version-specific/supported-software/h/Harminv.md @@ -6,15 +6,10 @@ search: Harminv is a free program (and accompanying library) to solve the problem of harmonic inversion - given a discrete-time, finite-length signal that consists of a sum of finitely-many sinusoids (possibly exponentially decaying) in a given bandwidth, it determines the frequencies, decay constants, amplitudes, and phases of those sinusoids. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.4`` | ``foss/2016a`` -``1.4.1`` | ``foss/2017b`` -``1.4.1`` | ``foss/2018a`` -``1.4.1`` | ``intel/2018a`` -``1.4.1`` | ``intel/2020a`` ``1.4.2`` | ``foss/2020b`` diff --git a/docs/version-specific/supported-software/h/HeFFTe.md b/docs/version-specific/supported-software/h/HeFFTe.md index 53472cf16e..36cb47af79 100644 --- a/docs/version-specific/supported-software/h/HeFFTe.md +++ b/docs/version-specific/supported-software/h/HeFFTe.md @@ -8,10 +8,11 @@ Highly Efficient FFT for Exascale (HeFFTe) library *homepage*: -version | toolchain ---------|---------- -``1.0`` | ``foss/2020a`` -``2.4.0`` | ``foss/2023b`` +version | versionsuffix | toolchain +--------|---------------|---------- +``2.4.0`` | | ``foss/2023b`` +``2.4.1`` | ``-CUDA-12.4.0`` | ``foss/2023b`` +``2.4.1`` | | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/Health-GPS.md b/docs/version-specific/supported-software/h/Health-GPS.md index bc26adb355..3d87e23ea9 100644 --- a/docs/version-specific/supported-software/h/Health-GPS.md +++ b/docs/version-specific/supported-software/h/Health-GPS.md @@ -4,7 +4,7 @@ search: --- # Health-GPS -Health-GPS microsimulation is part of the STOP project, and support researchers and policy makers in the analysis of the health and economic impacts of alternative measures to tackle chronic diseases and obesity in children. The model reproduces the characteristics of a population and simulates key individual event histories associated with key components of relevant behaviours, such as physical activity, and diseases such as diabetes or cancer. To run the test-jobs with HealthGPS.Tests the data-directory, found in your installation folder, must be in the current path. +Health-GPS microsimulation is part of the STOP project, and support researchers and policy makers in the analysis of the health and economic impacts of alternative measures to tackle chronic diseases and obesity in children. The model reproduces the characteristics of a population and simulates key individual event histories associated with key components of relevant behaviours, such as physical activity, and diseases such as diabetes or cancer. To run the test-jobs with HealthGPS.Tests the data-directory, found in your installation folder, must be in the current path. *homepage*: diff --git a/docs/version-specific/supported-software/h/Hello.md b/docs/version-specific/supported-software/h/Hello.md deleted file mode 100644 index d249f38e3b..0000000000 --- a/docs/version-specific/supported-software/h/Hello.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Hello - -The GNU Hello program produces a familiar, friendly greeting. Yes, this is another implementation of the classic program that prints "Hello, world!" when you run it. However, unlike the minimal version often seen, GNU Hello processes its argument list to modify its behavior, supports greetings in many languages, and so on. - -*homepage*: - -version | toolchain ---------|---------- -``2.10`` | ``GCCcore/8.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/h/HiC-Pro.md b/docs/version-specific/supported-software/h/HiC-Pro.md index 4e18690be1..06e29ba415 100644 --- a/docs/version-specific/supported-software/h/HiC-Pro.md +++ b/docs/version-specific/supported-software/h/HiC-Pro.md @@ -4,13 +4,12 @@ search: --- # HiC-Pro -HiC-Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to the normalized contact maps. +HiC-Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to the normalized contact maps. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2.9.0`` | ``-Python-2.7.12`` | ``foss/2016b`` ``3.1.0`` | ``-R-4.2.1`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/h/HiCExplorer.md b/docs/version-specific/supported-software/h/HiCExplorer.md index 541e826a5b..dc1f1f4184 100644 --- a/docs/version-specific/supported-software/h/HiCExplorer.md +++ b/docs/version-specific/supported-software/h/HiCExplorer.md @@ -8,10 +8,9 @@ HiCexplorer addresses the common tasks of Hi-C analysis from processing to visua *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1.1`` | ``-Python-3.6.4`` | ``foss/2018a`` -``3.7.2`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``3.7.2`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/HolisticTraceAnalysis.md b/docs/version-specific/supported-software/h/HolisticTraceAnalysis.md new file mode 100644 index 0000000000..89d803069e --- /dev/null +++ b/docs/version-specific/supported-software/h/HolisticTraceAnalysis.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# HolisticTraceAnalysis + +Holistic Trace Analysis (HTA), is a performance analysis tool to identify performance bottlenecks in distributed training workloads. HTA achieves this by analyzing traces collected through the PyTorch Profiler a.k.a. Kineto. + +*homepage*: + +version | toolchain +--------|---------- +``0.2.0`` | ``gfbf/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/h/Horovod.md b/docs/version-specific/supported-software/h/Horovod.md index 7946451b0b..847cc6e443 100644 --- a/docs/version-specific/supported-software/h/Horovod.md +++ b/docs/version-specific/supported-software/h/Horovod.md @@ -10,23 +10,11 @@ Horovod is a distributed training framework for TensorFlow. version | versionsuffix | toolchain --------|---------------|---------- -``0.18.1`` | ``-Python-3.7.2`` | ``foss/2019a`` -``0.18.2`` | ``-TensorFlow-1.15.0-Python-3.7.4`` | ``fosscuda/2019b`` -``0.18.2`` | ``-TensorFlow-1.15.2-Python-3.7.4`` | ``fosscuda/2019b`` -``0.18.2`` | ``-TensorFlow-2.0.0-Python-3.7.4`` | ``fosscuda/2019b`` -``0.19.1`` | ``-TensorFlow-2.1.0-Python-3.7.4`` | ``fosscuda/2019b`` -``0.19.5`` | ``-TensorFlow-2.2.0-Python-3.7.4`` | ``fosscuda/2019b`` -``0.20.3`` | ``-TensorFlow-2.3.1-Python-3.7.4`` | ``fosscuda/2019b`` -``0.21.1`` | ``-PyTorch-1.7.1-Python-3.7.4`` | ``fosscuda/2019b`` -``0.21.1`` | ``-TensorFlow-2.4.1-Python-3.7.4`` | ``fosscuda/2019b`` ``0.21.1`` | ``-TensorFlow-2.4.1`` | ``fosscuda/2020b`` -``0.21.3`` | ``-TensorFlow-2.3.1-Python-3.8.2`` | ``foss/2020a`` -``0.21.3`` | ``-TensorFlow-2.3.1-Python-3.8.2`` | ``fosscuda/2020a`` ``0.21.3`` | ``-PyTorch-1.7.1`` | ``fosscuda/2020b`` ``0.22.0`` | ``-PyTorch-1.8.1`` | ``fosscuda/2020b`` ``0.22.1`` | ``-CUDA-11.3.1-TensorFlow-2.5.3`` | ``foss/2021a`` ``0.22.1`` | ``-CUDA-11.3.1-TensorFlow-2.6.0`` | ``foss/2021a`` -``0.22.1`` | ``-TensorFlow-2.5.0-Python-3.7.4`` | ``fosscuda/2019b`` ``0.22.1`` | ``-TensorFlow-2.5.0`` | ``fosscuda/2020b`` ``0.23.0`` | ``-CUDA-11.3.1-PyTorch-1.10.0`` | ``foss/2021a`` ``0.23.0`` | ``-TensorFlow-2.5.0`` | ``fosscuda/2020b`` @@ -43,7 +31,6 @@ version | versionsuffix | toolchain ``0.28.1`` | ``-CUDA-11.7.0-TensorFlow-2.9.1`` | ``foss/2022a`` ``0.28.1`` | ``-PyTorch-1.12.0`` | ``foss/2022a`` ``0.28.1`` | ``-PyTorch-1.9.0`` | ``fosscuda/2020b`` -``0.9.10`` | ``-Python-3.6.3`` | ``intel/2017b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/HyPhy.md b/docs/version-specific/supported-software/h/HyPhy.md index 0919100852..0462e2d090 100644 --- a/docs/version-specific/supported-software/h/HyPhy.md +++ b/docs/version-specific/supported-software/h/HyPhy.md @@ -4,14 +4,12 @@ search: --- # HyPhy -HyPhy (Hypothesis Testing using Phylogenies) is an open-source software package for the analysis of genetic sequences (in particular the inference of natural selection) using techniques in phylogenetics, molecular evolution, and machine learning +HyPhy (Hypothesis Testing using Phylogenies) is an open-source software package for the analysis of genetic sequences (in particular the inference of natural selection) using techniques in phylogenetics, molecular evolution, and machine learning *homepage*: version | toolchain --------|---------- -``2.3.13`` | ``foss/2016b`` -``2.5.1`` | ``gompi/2019a`` ``2.5.33`` | ``gompi/2021a`` ``2.5.60`` | ``gompi/2022a`` diff --git a/docs/version-specific/supported-software/h/HyPo.md b/docs/version-specific/supported-software/h/HyPo.md deleted file mode 100644 index 425540d83d..0000000000 --- a/docs/version-specific/supported-software/h/HyPo.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# HyPo - -HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.3`` | ``-Python-3.7.4`` | ``GCC/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/h/Hydra.md b/docs/version-specific/supported-software/h/Hydra.md index 91703b182e..d9194e6387 100644 --- a/docs/version-specific/supported-software/h/Hydra.md +++ b/docs/version-specific/supported-software/h/Hydra.md @@ -8,11 +8,12 @@ Hydra is an open-source Python framework that simplifies the development of rese *homepage*: -version | toolchain ---------|---------- -``1.1.1`` | ``GCCcore/10.3.0`` -``1.3.2`` | ``GCCcore/11.3.0`` -``1.3.2`` | ``GCCcore/12.3.0`` +version | versionsuffix | toolchain +--------|---------------|---------- +``1.1.1`` | | ``GCCcore/10.3.0`` +``1.3.2`` | | ``GCCcore/11.3.0`` +``1.3.2`` | | ``GCCcore/12.3.0`` +``1.3.2`` | ``-with-plugins`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/HyperQueue.md b/docs/version-specific/supported-software/h/HyperQueue.md index e88ea93a03..c31a7391f1 100644 --- a/docs/version-specific/supported-software/h/HyperQueue.md +++ b/docs/version-specific/supported-software/h/HyperQueue.md @@ -11,6 +11,7 @@ HyperQueue lets you build a computation plan consisting of a large amount of tas version | toolchain --------|---------- ``0.13.0`` | ``system`` +``0.20.0`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/Hyperopt.md b/docs/version-specific/supported-software/h/Hyperopt.md index 586f9450d6..d5ab86a787 100644 --- a/docs/version-specific/supported-software/h/Hyperopt.md +++ b/docs/version-specific/supported-software/h/Hyperopt.md @@ -4,18 +4,15 @@ search: --- # Hyperopt -hyperopt is a Python library for optimizing over awkward search spaces with real-valued, discrete, and conditional dimensions. +Distributed Asynchronous Hyperparameter Optimization in Python -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1`` | ``-Python-2.7.14`` | ``intel/2017b`` -``0.1.1`` | ``-Python-3.6.6`` | ``intel/2018b`` -``0.2.4`` | ``-Python-3.7.4-Java-1.8`` | ``intel/2019b`` -``0.2.5`` | | ``fosscuda/2020b`` -``0.2.7`` | | ``foss/2021a`` -``0.2.7`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``0.2.5`` | ``fosscuda/2020b`` +``0.2.7`` | ``foss/2021a`` +``0.2.7`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/Hypre.md b/docs/version-specific/supported-software/h/Hypre.md index a486593bf6..4a9f41b571 100644 --- a/docs/version-specific/supported-software/h/Hypre.md +++ b/docs/version-specific/supported-software/h/Hypre.md @@ -4,22 +4,12 @@ search: --- # Hypre -Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences. +Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.11.1`` | ``foss/2016a`` -``2.11.1`` | ``intel/2016a`` -``2.14.0`` | ``foss/2018a`` -``2.14.0`` | ``intel/2018a`` -``2.15.1`` | ``foss/2019a`` -``2.15.1`` | ``intel/2019a`` -``2.18.2`` | ``foss/2019b`` -``2.18.2`` | ``foss/2020a`` -``2.18.2`` | ``intel/2019b`` -``2.18.2`` | ``intel/2020a`` ``2.20.0`` | ``foss/2020b`` ``2.20.0`` | ``intel/2020b`` ``2.21.0`` | ``foss/2021a`` @@ -30,6 +20,7 @@ version | toolchain ``2.27.0`` | ``foss/2022b`` ``2.29.0`` | ``foss/2023a`` ``2.31.0`` | ``foss/2023b`` +``2.32.0`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/h4toh5.md b/docs/version-specific/supported-software/h/h4toh5.md index a8019614d3..9237760a0b 100644 --- a/docs/version-specific/supported-software/h/h4toh5.md +++ b/docs/version-specific/supported-software/h/h4toh5.md @@ -6,15 +6,12 @@ search: The h4toh5 software consists of the h4toh5 and h5toh4 command-line utilities, as well as a conversion library for converting between individual HDF4 and HDF5 objects. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.2.2`` | ``-linux-x86_64-static`` | ``system`` -``2.2.3`` | | ``foss/2018b`` -``2.2.3`` | | ``gompi/2019b`` -``2.2.3`` | | ``gompi/2020b`` -``2.2.5`` | | ``gompi/2022a`` +version | toolchain +--------|---------- +``2.2.3`` | ``gompi/2020b`` +``2.2.5`` | ``gompi/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/h5py.md b/docs/version-specific/supported-software/h/h5py.md index 77e4276783..952f674aa9 100644 --- a/docs/version-specific/supported-software/h/h5py.md +++ b/docs/version-specific/supported-software/h/h5py.md @@ -8,80 +8,22 @@ HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.10.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``2.10.0`` | ``-serial-Python-3.7.4`` | ``foss/2019b`` -``2.10.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``2.10.0`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``2.10.0`` | ``-Python-3.8.2`` | ``fosscuda/2020a`` -``2.10.0`` | ``-Python-3.7.4`` | ``intel/2019b`` -``2.10.0`` | ``-Python-2.7.18`` | ``intel/2020a`` -``2.10.0`` | ``-Python-3.8.2`` | ``intel/2020a`` -``2.10.0`` | ``-Python-3.7.4`` | ``intelcuda/2019b`` -``2.10.0`` | ``-Python-3.8.2`` | ``intelcuda/2020a`` -``2.5.0`` | ``-Python-2.7.11-HDF5-1.8.16-serial`` | ``foss/2016a`` -``2.5.0`` | ``-Python-2.7.11-HDF5-1.8.16`` | ``foss/2016a`` -``2.5.0`` | ``-Python-3.5.1-HDF5-1.8.16`` | ``foss/2016a`` -``2.5.0`` | ``-Python-2.7.11-HDF5-1.8.16-serial`` | ``intel/2016a`` -``2.5.0`` | ``-Python-2.7.11-HDF5-1.8.16`` | ``intel/2016a`` -``2.6.0`` | ``-Python-2.7.12-HDF5-1.10.0-patch1`` | ``foss/2016b`` -``2.6.0`` | ``-Python-2.7.12-HDF5-1.8.17`` | ``foss/2016b`` -``2.6.0`` | ``-Python-2.7.12-HDF5-1.8.18`` | ``foss/2016b`` -``2.6.0`` | ``-Python-3.5.2-HDF5-1.10.0-patch1`` | ``foss/2016b`` -``2.6.0`` | ``-Python-3.5.2-HDF5-1.8.18`` | ``foss/2016b`` -``2.6.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``2.6.0`` | ``-Python-2.7.12-HDF5-1.10.0-patch1`` | ``intel/2016b`` -``2.6.0`` | ``-Python-2.7.12-HDF5-1.8.17`` | ``intel/2016b`` -``2.6.0`` | ``-Python-2.7.12-HDF5-1.8.18`` | ``intel/2016b`` -``2.6.0`` | ``-Python-3.5.2-HDF5-1.10.0-patch1`` | ``intel/2016b`` -``2.6.0`` | ``-Python-3.5.2-HDF5-1.8.17`` | ``intel/2016b`` -``2.6.0`` | ``-Python-3.5.2-HDF5-1.8.18`` | ``intel/2016b`` -``2.7.0`` | ``-Python-2.7.13-HDF5-1.10.1`` | ``foss/2017a`` -``2.7.0`` | ``-Python-2.7.13-HDF5-1.8.19`` | ``foss/2017a`` -``2.7.0`` | ``-Python-3.6.1-HDF5-1.10.1`` | ``foss/2017a`` -``2.7.0`` | ``-Python-3.6.1-HDF5-1.8.19`` | ``foss/2017a`` -``2.7.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``2.7.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``2.7.0`` | ``-Python-3.6.1-HDF5-1.10.0-patch1`` | ``intel/2017a`` -``2.7.0`` | ``-Python-3.6.1`` | ``intel/2017a`` -``2.7.1`` | ``-Python-2.7.14`` | ``foss/2017b`` -``2.7.1`` | ``-Python-3.6.3`` | ``foss/2017b`` -``2.7.1`` | ``-Python-2.7.14`` | ``foss/2018a`` -``2.7.1`` | ``-Python-3.6.4`` | ``foss/2018a`` -``2.7.1`` | ``-Python-2.7.14`` | ``fosscuda/2017b`` -``2.7.1`` | ``-Python-3.6.3`` | ``fosscuda/2017b`` -``2.7.1`` | ``-Python-2.7.13`` | ``intel/2017a`` -``2.7.1`` | ``-Python-3.6.1`` | ``intel/2017a`` -``2.7.1`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.7.1`` | ``-Python-3.6.3`` | ``intel/2017b`` -``2.7.1`` | ``-Python-2.7.14-serial`` | ``intel/2018a`` -``2.7.1`` | ``-Python-2.7.14`` | ``intel/2018a`` -``2.7.1`` | ``-Python-3.6.4`` | ``intel/2018a`` -``2.8.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``2.8.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``2.8.0`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` -``2.8.0`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` -``2.8.0`` | ``-Python-2.7.15-serial`` | ``intel/2018b`` -``2.8.0`` | ``-Python-2.7.15`` | ``intel/2018b`` -``2.8.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``2.9.0`` | | ``foss/2019a`` -``2.9.0`` | | ``fosscuda/2019a`` -``2.9.0`` | | ``intel/2019a`` -``2.9.0`` | | ``intelcuda/2019a`` -``3.1.0`` | | ``foss/2020b`` -``3.1.0`` | | ``fosscuda/2020b`` -``3.1.0`` | | ``intel/2020b`` -``3.1.0`` | | ``intelcuda/2020b`` -``3.11.0`` | | ``foss/2023b`` -``3.2.1`` | | ``foss/2021a`` -``3.2.1`` | | ``gomkl/2021a`` -``3.6.0`` | | ``foss/2021b`` -``3.6.0`` | | ``intel/2021b`` -``3.7.0`` | | ``foss/2022a`` -``3.7.0`` | | ``intel/2022a`` -``3.8.0`` | | ``foss/2022b`` -``3.9.0`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``3.1.0`` | ``foss/2020b`` +``3.1.0`` | ``fosscuda/2020b`` +``3.1.0`` | ``intel/2020b`` +``3.1.0`` | ``intelcuda/2020b`` +``3.11.0`` | ``foss/2023b`` +``3.12.1`` | ``foss/2024a`` +``3.2.1`` | ``foss/2021a`` +``3.2.1`` | ``gomkl/2021a`` +``3.6.0`` | ``foss/2021b`` +``3.6.0`` | ``intel/2021b`` +``3.7.0`` | ``foss/2022a`` +``3.7.0`` | ``intel/2022a`` +``3.8.0`` | ``foss/2022b`` +``3.9.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/hampel.md b/docs/version-specific/supported-software/h/hampel.md index 9fbbf11ded..0b7b4ef589 100644 --- a/docs/version-specific/supported-software/h/hampel.md +++ b/docs/version-specific/supported-software/h/hampel.md @@ -4,7 +4,7 @@ search: --- # hampel -The Hampel filter is generally used to detect anomalies in data with a timeseries structure. It basically consists of a sliding window of a parameterizable size. For each window, each observation will be compared with the Median Absolute Deviation (MAD). The observation will be considered an outlier in the case in which it exceeds the MAD by n times (the parameter n is also parameterizable). +The Hampel filter is generally used to detect anomalies in data with a timeseries structure. It basically consists of a sliding window of a parameterizable size. For each window, each observation will be compared with the Median Absolute Deviation (MAD). The observation will be considered an outlier in the case in which it exceeds the MAD by n times (the parameter n is also parameterizable). *homepage*: diff --git a/docs/version-specific/supported-software/h/hanythingondemand.md b/docs/version-specific/supported-software/h/hanythingondemand.md deleted file mode 100644 index ac1b0c96bd..0000000000 --- a/docs/version-specific/supported-software/h/hanythingondemand.md +++ /dev/null @@ -1,35 +0,0 @@ ---- -search: - boost: 0.5 ---- -# hanythingondemand - -HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. It uses the Torque resource manager to do node allocation. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0.0`` | ``-cli`` | ``system`` -``3.0.1`` | ``-cli`` | ``system`` -``3.0.2`` | ``-cli`` | ``system`` -``3.0.3`` | ``-cli`` | ``system`` -``3.0.4`` | ``-cli`` | ``system`` -``3.1.0`` | ``-cli`` | ``system`` -``3.1.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``3.1.1`` | ``-cli`` | ``system`` -``3.1.1`` | ``-Python-2.7.11`` | ``intel/2016a`` -``3.1.2`` | ``-cli`` | ``system`` -``3.1.2`` | ``-Python-2.7.11`` | ``intel/2016a`` -``3.1.3`` | ``-cli`` | ``system`` -``3.1.3`` | ``-Python-2.7.12`` | ``intel/2016b`` -``3.1.4`` | ``-cli`` | ``system`` -``3.1.4`` | ``-Python-2.7.12`` | ``intel/2016b`` -``3.2.0`` | ``-cli`` | ``system`` -``3.2.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``3.2.2`` | ``-cli`` | ``system`` -``3.2.2`` | ``-Python-2.7.12`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/h/harmony.md b/docs/version-specific/supported-software/h/harmony.md index 3f7050d6df..c08d648371 100644 --- a/docs/version-specific/supported-software/h/harmony.md +++ b/docs/version-specific/supported-software/h/harmony.md @@ -11,7 +11,6 @@ Harmony is a general-purpose R package with an efficient algorithm for integrati version | versionsuffix | toolchain --------|---------------|---------- ``0.1.0-20210528`` | ``-R-4.0.3`` | ``foss/2020b`` -``1.0.0-20200224`` | ``-R-4.0.0`` | ``foss/2020a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FIX.md b/docs/version-specific/supported-software/h/harvest-tools.md similarity index 59% rename from docs/version-specific/supported-software/f/FIX.md rename to docs/version-specific/supported-software/h/harvest-tools.md index fa5e453735..19344fe952 100644 --- a/docs/version-specific/supported-software/f/FIX.md +++ b/docs/version-specific/supported-software/h/harvest-tools.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# FIX +# harvest-tools -FIX attempts to auto-classify ICA components into "good" vs "bad" components, so that the bad components can be removed from the 4D FMRI data. +HarvestTools is a utility for creating and interfacing with Gingr files, which are efficient archives that the Harvest Suite uses to store reference-compressed multi-alignments, phylogenetic trees, filtered variants and annotations. Though designed for use with Parsnp and Gingr, HarvestTools can also be used for generic conversion between standard bioinformatics file formats. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.06.12`` | ``-Octave-Python-3.7.2`` | ``foss/2019a`` +version | toolchain +--------|---------- +``1.3`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/hatch-jupyter-builder.md b/docs/version-specific/supported-software/h/hatch-jupyter-builder.md index 14cd4f581d..21fe3b8ac5 100644 --- a/docs/version-specific/supported-software/h/hatch-jupyter-builder.md +++ b/docs/version-specific/supported-software/h/hatch-jupyter-builder.md @@ -10,7 +10,9 @@ Hatch Jupyter Builder is a plugin for the hatchling Python build backend. It is version | toolchain --------|---------- +``0.9.1`` | ``GCCcore/12.3.0`` ``0.9.1`` | ``GCCcore/13.2.0`` +``0.9.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BCALM.md b/docs/version-specific/supported-software/h/hatch.md similarity index 84% rename from docs/version-specific/supported-software/b/BCALM.md rename to docs/version-specific/supported-software/h/hatch.md index 42016b7d39..0d7dd5c1d5 100644 --- a/docs/version-specific/supported-software/b/BCALM.md +++ b/docs/version-specific/supported-software/h/hatch.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# BCALM +# hatch -de Bruijn graph compaction in low memory +Hatch is a modern, extensible Python project manager. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.2.0`` | ``foss/2018a`` +``1.9.7`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/hdWGCNA.md b/docs/version-specific/supported-software/h/hdWGCNA.md index bfee639082..0b6131bbb8 100644 --- a/docs/version-specific/supported-software/h/hdWGCNA.md +++ b/docs/version-specific/supported-software/h/hdWGCNA.md @@ -4,7 +4,7 @@ search: --- # hdWGCNA -hdWGCNA is an R package for performing weighted gene co-expression network analysis (WGCNA) in high dimensional transcriptomics data such as single-cell RNA-seq or spatial transcriptomics. hdWGCNA is highly modular and can construct context-specific co-expression networks across cellular and spatial hierarchies. hdWGNCA identifies modules of highly co-expressed genes and provides context for these modules via statistical testing and biological knowledge sources. hdWGCNA uses datasets formatted as Seurat objects. +hdWGCNA is an R package for performing weighted gene co-expression network analysis (WGCNA) in high dimensional transcriptomics data such as single-cell RNA-seq or spatial transcriptomics. hdWGCNA is highly modular and can construct context-specific co-expression networks across cellular and spatial hierarchies. hdWGNCA identifies modules of highly co-expressed genes and provides context for these modules via statistical testing and biological knowledge sources. hdWGCNA uses datasets formatted as Seurat objects. *homepage*: diff --git a/docs/version-specific/supported-software/h/hdf5storage.md b/docs/version-specific/supported-software/h/hdf5storage.md deleted file mode 100644 index e4750f4c92..0000000000 --- a/docs/version-specific/supported-software/h/hdf5storage.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# hdf5storage - -This Python package provides high level utilities to read/write a variety of Python types to/from HDF5 (Heirarchal Data Format) formatted files. This package also provides support for MATLAB MAT v7.3 formatted files, which are just HDF5 files with a different extension and some extra meta-data. All of this is done without pickling data. Pickling is bad for security because it allows arbitrary code to be executed in the interpreter. One wants to be able to read possibly HDF5 and MAT files from untrusted sources, so pickling is avoided in this package. - -*homepage*: - -version | toolchain ---------|---------- -``0.1.15`` | ``foss/2019a`` -``0.1.15`` | ``fosscuda/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/h/heaptrack.md b/docs/version-specific/supported-software/h/heaptrack.md deleted file mode 100644 index 191e97c525..0000000000 --- a/docs/version-specific/supported-software/h/heaptrack.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# heaptrack - -A heap memory profiler for Linux. - -*homepage*: - -version | toolchain ---------|---------- -``1.1.0`` | ``foss/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/h/hector.md b/docs/version-specific/supported-software/h/hector.md index 98a9569e93..57eb181af7 100644 --- a/docs/version-specific/supported-software/h/hector.md +++ b/docs/version-specific/supported-software/h/hector.md @@ -4,7 +4,7 @@ search: --- # hector -This is the repository for Hector, an open source, object-oriented, simple global climate carbon-cycle model. It runs essentially instantaneously while still representing the most critical global scale earth system processes, and is one of a class of models heavily used for for emulating complex climate models and uncertainty analyses. +This is the repository for Hector, an open source, object-oriented, simple global climate carbon-cycle model. It runs essentially instantaneously while still representing the most critical global scale earth system processes, and is one of a class of models heavily used for for emulating complex climate models and uncertainty analyses. *homepage*: diff --git a/docs/version-specific/supported-software/h/help2man.md b/docs/version-specific/supported-software/h/help2man.md index f1db7cacdb..420ca46faf 100644 --- a/docs/version-specific/supported-software/h/help2man.md +++ b/docs/version-specific/supported-software/h/help2man.md @@ -10,35 +10,13 @@ help2man produces simple manual pages from the '--help' and '--version' output o version | toolchain --------|---------- -``1.47.10`` | ``GCCcore/9.1.0`` -``1.47.10`` | ``GCCcore/9.2.0`` -``1.47.12`` | ``GCCcore/9.3.0`` -``1.47.15`` | ``GCCcore/10.1.0`` ``1.47.16`` | ``GCCcore/10.2.0`` -``1.47.4`` | ``GCCcore/5.4.0`` -``1.47.4`` | ``GCCcore/6.3.0`` -``1.47.4`` | ``GCCcore/6.4.0`` -``1.47.4`` | ``GCCcore/7.1.0`` -``1.47.4`` | ``GCCcore/7.2.0`` -``1.47.4`` | ``GCCcore/7.3.0`` -``1.47.4`` | ``GCCcore/system`` -``1.47.4`` | ``gimkl/2017a`` -``1.47.4`` | ``intel/2016b`` -``1.47.4`` | ``system`` -``1.47.5`` | ``GCCcore/5.5.0`` -``1.47.6`` | ``GCCcore/8.1.0`` -``1.47.7`` | ``GCCcore/8.2.0`` -``1.47.8`` | ``GCCcore/7.4.0`` -``1.47.8`` | ``GCCcore/8.3.0`` -``1.47.8`` | ``GCCcore/8.4.0`` ``1.48.3`` | ``GCCcore/10.3.0`` ``1.48.3`` | ``GCCcore/11.1.0`` ``1.48.3`` | ``GCCcore/11.2.0`` -``1.48.3`` | ``GCCcore/9.4.0`` ``1.49.2`` | ``GCCcore/11.3.0`` ``1.49.2`` | ``GCCcore/12.1.0`` ``1.49.2`` | ``GCCcore/12.2.0`` -``1.49.2`` | ``GCCcore/9.5.0`` ``1.49.3`` | ``GCCcore/11.4.0`` ``1.49.3`` | ``GCCcore/12.3.0`` ``1.49.3`` | ``GCCcore/13.1.0`` diff --git a/docs/version-specific/supported-software/h/hic-straw.md b/docs/version-specific/supported-software/h/hic-straw.md index d111391e84..fb62218c11 100644 --- a/docs/version-specific/supported-software/h/hic-straw.md +++ b/docs/version-specific/supported-software/h/hic-straw.md @@ -11,6 +11,7 @@ Straw is a library which allows rapid streaming of contact data from .hic files. version | toolchain --------|---------- ``1.3.1`` | ``foss/2022a`` +``1.3.1`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/hierfstat.md b/docs/version-specific/supported-software/h/hierfstat.md deleted file mode 100644 index dde0a06745..0000000000 --- a/docs/version-specific/supported-software/h/hierfstat.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# hierfstat - -Estimates hierarchical F-statistics from haploid or diploid genetic data with any numbers of levels in the hierarchy. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.5-7`` | ``-R-4.0.0-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/h/hifiasm.md b/docs/version-specific/supported-software/h/hifiasm.md index 4773809fb4..605964855e 100644 --- a/docs/version-specific/supported-software/h/hifiasm.md +++ b/docs/version-specific/supported-software/h/hifiasm.md @@ -11,10 +11,10 @@ Hifiasm: a haplotype-resolved assembler for accurate Hifi reads. version | toolchain --------|---------- ``0.15.2`` | ``GCCcore/10.3.0`` -``0.15.2`` | ``GCCcore/9.3.0`` ``0.16.1`` | ``GCCcore/10.3.0`` ``0.19.5`` | ``GCCcore/11.2.0`` ``0.19.7`` | ``GCCcore/12.2.0`` +``0.23.0`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/hiredis.md b/docs/version-specific/supported-software/h/hiredis.md index 25078eebef..296a315abb 100644 --- a/docs/version-specific/supported-software/h/hiredis.md +++ b/docs/version-specific/supported-software/h/hiredis.md @@ -4,7 +4,7 @@ search: --- # hiredis -Hiredis is a minimalistic C client library for the Redis database. It is minimalistic because it just adds minimal support for the protocol, but at the same time it uses a high level printf-alike API in order to make it much higher level than otherwise suggested by its minimal code base and the lack of explicit bindings for every Redis command. +Hiredis is a minimalistic C client library for the Redis database. It is minimalistic because it just adds minimal support for the protocol, but at the same time it uses a high level printf-alike API in order to make it much higher level than otherwise suggested by its minimal code base and the lack of explicit bindings for every Redis command. *homepage*: diff --git a/docs/version-specific/supported-software/h/hl7apy.md b/docs/version-specific/supported-software/h/hl7apy.md deleted file mode 100644 index 0af17e2137..0000000000 --- a/docs/version-specific/supported-software/h/hl7apy.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# hl7apy - -Python library to parse, create and handle HL7 v2 messages. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.3.3`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/h/hmmlearn.md b/docs/version-specific/supported-software/h/hmmlearn.md index 94a8a032ca..af692979ae 100644 --- a/docs/version-specific/supported-software/h/hmmlearn.md +++ b/docs/version-specific/supported-software/h/hmmlearn.md @@ -8,12 +8,10 @@ hmmlearn is a set of algorithms for unsupervised learning and inference of Hidde *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.2.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``0.2.0`` | ``-Python-3.6.4`` | ``intel/2018a`` -``0.3.0`` | | ``foss/2022b`` -``0.3.0`` | | ``gfbf/2023a`` +version | toolchain +--------|---------- +``0.3.0`` | ``foss/2022b`` +``0.3.0`` | ``gfbf/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/horton.md b/docs/version-specific/supported-software/h/horton.md deleted file mode 100644 index 7c68ba115a..0000000000 --- a/docs/version-specific/supported-software/h/horton.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# horton - -HORTON is a Helpful Open-source Research TOol for N-fermion systems, written primarily in the Python programming language. (HORTON is named after the helpful pachyderm, not the Canadian caffeine supply store.) The ultimate goal of HORTON is to provide a platform for testing new ideas on the quantum many-body problem at a reasonable computational cost. Although HORTON is primarily designed to be a quantum-chemistry program, it can perform computations involving model Hamiltonians, and could be extended for computations in nuclear physics. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1.1`` | ``-Python-2.7.15`` | ``foss/2018b`` -``2.1.1`` | ``-Python-2.7.15`` | ``intel/2018b`` -``2.1.1`` | ``-Python-2.7.18`` | ``intel/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/h/htop.md b/docs/version-specific/supported-software/h/htop.md index 094719a3ff..62caa0a668 100644 --- a/docs/version-specific/supported-software/h/htop.md +++ b/docs/version-specific/supported-software/h/htop.md @@ -6,12 +6,10 @@ search: An interactive process viewer for Unix -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.0.0`` | ``system`` -``2.0.1`` | ``system`` ``3.2.1`` | ``system`` ``3.2.2`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/h/hub.md b/docs/version-specific/supported-software/h/hub.md deleted file mode 100644 index 90f4f6ee0b..0000000000 --- a/docs/version-specific/supported-software/h/hub.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# hub - -hub is a command-line wrapper for git that makes you better at GitHub. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.2.2`` | ``-linux-amd64`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/h/hunspell.md b/docs/version-specific/supported-software/h/hunspell.md index 24af797479..b2dcd5fa49 100644 --- a/docs/version-specific/supported-software/h/hunspell.md +++ b/docs/version-specific/supported-software/h/hunspell.md @@ -4,14 +4,12 @@ search: --- # hunspell -Hunspell is a spell checker and morphological analyzer library and program designed for languages with rich morphology and complex word compounding or character encoding. +Hunspell is a spell checker and morphological analyzer library and program designed for languageswith rich morphology and complex word compounding or character encoding. *homepage*: version | toolchain --------|---------- -``1.6.1`` | ``intel/2017a`` -``1.7.0`` | ``GCCcore/8.2.0`` ``1.7.1`` | ``GCCcore/11.2.0`` ``1.7.1`` | ``GCCcore/11.3.0`` ``1.7.2`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/h/hwloc.md b/docs/version-specific/supported-software/h/hwloc.md index f6b01bfed2..d10461b8a5 100644 --- a/docs/version-specific/supported-software/h/hwloc.md +++ b/docs/version-specific/supported-software/h/hwloc.md @@ -4,54 +4,15 @@ search: --- # hwloc -The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently. +The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently. *homepage*: version | toolchain --------|---------- -``1.10.0`` | ``GCC/4.9.2`` -``1.10.1`` | ``GCC/4.8.4`` -``1.10.1`` | ``GNU/4.9.2-2.25`` -``1.11.0`` | ``GNU/4.9.3-2.25`` -``1.11.1`` | ``GCC/4.9.3`` -``1.11.10`` | ``GCCcore/7.3.0`` -``1.11.11`` | ``GCCcore/8.2.0`` -``1.11.12`` | ``GCCcore/8.3.0`` -``1.11.2`` | ``GCC/4.9.3-2.25`` -``1.11.2`` | ``GNU/4.9.3-2.25`` -``1.11.3`` | ``GCC/5.2.0`` -``1.11.3`` | ``GCC/5.3.0-2.26`` -``1.11.3`` | ``GCC/5.4.0-2.26`` -``1.11.3`` | ``GCC/6.1.0-2.27`` -``1.11.3`` | ``PGI/16.3-GCC-4.9.3-2.25`` -``1.11.3`` | ``PGI/16.4-GCC-5.3.0-2.26`` -``1.11.3`` | ``iccifort/2016.3.210-GCC-4.9.3-2.25`` -``1.11.3`` | ``iccifort/2016.3.210-GCC-5.4.0-2.26`` -``1.11.3`` | ``intel/2016a`` -``1.11.3`` | ``intel/2016b`` -``1.11.4`` | ``GCC/6.2.0-2.27`` -``1.11.4`` | ``PGI/16.7-GCC-5.4.0-2.26`` -``1.11.4`` | ``iccifort/2017.1.132-GCC-5.4.0-2.26`` -``1.11.5`` | ``GCC/5.4.0-2.26`` -``1.11.5`` | ``GCC/6.3.0-2.27`` -``1.11.5`` | ``iccifort/2017.1.132-GCC-6.3.0-2.27`` -``1.11.6`` | ``GCC/6.3.0-2.28`` -``1.11.7`` | ``GCCcore/5.4.0`` -``1.11.7`` | ``GCCcore/6.4.0`` -``1.11.8`` | ``GCCcore/6.4.0`` -``1.11.8`` | ``GCCcore/7.2.0`` -``1.11.8`` | ``intel/2017a`` -``1.7.2`` | ``GCC/4.8.2`` -``1.8.1`` | ``GCC/4.8.2`` -``1.8.1`` | ``GCC/4.8.3`` -``1.9`` | ``GCC/4.8.3`` -``2.0.2`` | ``GCCcore/8.2.0`` -``2.0.3`` | ``GCCcore/8.3.0`` -``2.1.0`` | ``GCCcore/9.2.0`` ``2.10.0`` | ``GCCcore/13.3.0`` +``2.11.2`` | ``GCCcore/14.2.0`` ``2.2.0`` | ``GCCcore/10.2.0`` -``2.2.0`` | ``GCCcore/9.3.0`` ``2.4.1`` | ``GCCcore/10.3.0`` ``2.5.0`` | ``GCCcore/11.2.0`` ``2.7.1`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/h/hyperspy.md b/docs/version-specific/supported-software/h/hyperspy.md deleted file mode 100644 index e7f8345dac..0000000000 --- a/docs/version-specific/supported-software/h/hyperspy.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# hyperspy - -HyperSpy is an open source Python library which provides tools to facilitate the interactive data analysis of multi-dimensional datasets that can be described as multi-dimensional arrays of a given signal (e.g. a 2D array of spectra a.k.a spectrum image) - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.1`` | ``-Python-3.5.2`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/h/hypothesis.md b/docs/version-specific/supported-software/h/hypothesis.md index fe3f0e277e..85e8ab4c29 100644 --- a/docs/version-specific/supported-software/h/hypothesis.md +++ b/docs/version-specific/supported-software/h/hypothesis.md @@ -10,16 +10,11 @@ Hypothesis is an advanced testing library for Python. It lets you write tests wh version | versionsuffix | toolchain --------|---------------|---------- -``4.23.4`` | | ``GCCcore/8.2.0`` -``4.39.3`` | ``-Python-3.6.4`` | ``intel/2018a`` -``4.44.2`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``4.5.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``4.5.0`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` ``4.53.1`` | | ``GCCcore/10.2.0`` ``4.57.1`` | ``-Python-2.7.18`` | ``GCCcore/11.2.0`` +``4.57.1`` | ``-Python-2.7.18`` | ``GCCcore/12.3.0`` ``5.41.2`` | | ``GCCcore/10.2.0`` ``5.41.5`` | | ``GCCcore/10.2.0`` -``5.6.0`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` ``6.103.1`` | | ``GCCcore/13.3.0`` ``6.13.1`` | | ``GCCcore/10.3.0`` ``6.14.6`` | | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/h/index.md b/docs/version-specific/supported-software/h/index.md index 409994a011..a56f918164 100644 --- a/docs/version-specific/supported-software/h/index.md +++ b/docs/version-specific/supported-software/h/index.md @@ -9,20 +9,18 @@ search: * [h4toh5](h4toh5.md) - * [H5hut](H5hut.md) * [h5netcdf](h5netcdf.md) * [h5py](h5py.md) * [Hadoop](Hadoop.md) * [HAL](HAL.md) * [hampel](hampel.md) - * [hanythingondemand](hanythingondemand.md) - * [HAPGEN2](HAPGEN2.md) * [HarfBuzz](HarfBuzz.md) * [Harminv](Harminv.md) * [harmony](harmony.md) + * [harvest-tools](harvest-tools.md) + * [hatch](hatch.md) * [hatch-jupyter-builder](hatch-jupyter-builder.md) * [hatchling](hatchling.md) - * [HBase](HBase.md) * [HD-BET](HD-BET.md) * [HDBSCAN](HDBSCAN.md) * [HDDM](HDDM.md) @@ -31,15 +29,10 @@ search: * [HDF-EOS2](HDF-EOS2.md) * [HDF-EOS5](HDF-EOS5.md) * [HDF5](HDF5.md) - * [hdf5storage](hdf5storage.md) - * [HDFView](HDFView.md) * [hdWGCNA](hdWGCNA.md) - * [HEALPix](HEALPix.md) * [Health-GPS](Health-GPS.md) - * [heaptrack](heaptrack.md) * [hector](hector.md) * [HeFFTe](HeFFTe.md) - * [Hello](Hello.md) * [help2man](help2man.md) * [HepMC](HepMC.md) * [HepMC3](HepMC3.md) @@ -51,41 +44,37 @@ search: * [hic-straw](hic-straw.md) * [HiCExplorer](HiCExplorer.md) * [HiCMatrix](HiCMatrix.md) - * [hierfstat](hierfstat.md) * [hifiasm](hifiasm.md) * [HighFive](HighFive.md) * [HiGHS](HiGHS.md) * [Highway](Highway.md) * [HIP](HIP.md) * [hipify-clang](hipify-clang.md) - * [HIPS](HIPS.md) * [hipSYCL](hipSYCL.md) * [hiredis](hiredis.md) * [HISAT2](HISAT2.md) * [histolab](histolab.md) * [hivtrace](hivtrace.md) - * [hl7apy](hl7apy.md) - * [HLAminer](HLAminer.md) * [hmmcopy_utils](hmmcopy_utils.md) * [HMMER](HMMER.md) * [HMMER2](HMMER2.md) * [hmmlearn](hmmlearn.md) - * [HOME](HOME.md) + * [HNOCA-tools](HNOCA-tools.md) + * [HOLE2](HOLE2.md) + * [HolisticTraceAnalysis](HolisticTraceAnalysis.md) * [HOMER](HOMER.md) * [HOOMD-blue](HOOMD-blue.md) * [Horovod](Horovod.md) - * [horton](horton.md) * [how_are_we_stranded_here](how_are_we_stranded_here.md) * [HPCC](HPCC.md) * [HPCG](HPCG.md) - * [HPCX](HPCX.md) * [HPDBSCAN](HPDBSCAN.md) * [HPL](HPL.md) + * [HPX](HPX.md) * [htop](htop.md) * [HTSeq](HTSeq.md) * [HTSlib](HTSlib.md) * [HTSplotter](HTSplotter.md) - * [hub](hub.md) * [humann](humann.md) * [hunspell](hunspell.md) * [hwloc](hwloc.md) @@ -93,9 +82,7 @@ search: * [Hydra](Hydra.md) * [Hyperopt](Hyperopt.md) * [HyperQueue](HyperQueue.md) - * [hyperspy](hyperspy.md) * [HyPhy](HyPhy.md) - * [HyPo](HyPo.md) * [hypothesis](hypothesis.md) * [Hypre](Hypre.md) diff --git a/docs/version-specific/supported-software/i/I-TASSER.md b/docs/version-specific/supported-software/i/I-TASSER.md deleted file mode 100644 index bd278bdeae..0000000000 --- a/docs/version-specific/supported-software/i/I-TASSER.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# I-TASSER - -I-TASSER is a set of pre-compiled binaries and scripts for protein structure and function modelling and comparison. - -*homepage*: - -version | toolchain ---------|---------- -``4.0`` | ``system`` -``4.2`` | ``system`` -``5.1`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/ICA-AROMA.md b/docs/version-specific/supported-software/i/ICA-AROMA.md deleted file mode 100644 index e97b69bc3d..0000000000 --- a/docs/version-specific/supported-software/i/ICA-AROMA.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ICA-AROMA - -ICA-AROMA (i.e. 'ICA-based Automatic Removal Of Motion Artifacts') concerns a data-driven method to identify and remove motion-related independent components from fMRI data. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.4.4-beta`` | ``-Python-3.6.6`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/ICU.md b/docs/version-specific/supported-software/i/ICU.md index 9636e2cbbb..d69c71a006 100644 --- a/docs/version-specific/supported-software/i/ICU.md +++ b/docs/version-specific/supported-software/i/ICU.md @@ -6,16 +6,10 @@ search: ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications. -*homepage*: +*homepage*: version | toolchain --------|---------- -``61.1`` | ``GCCcore/6.4.0`` -``61.1`` | ``GCCcore/7.3.0`` -``64.2`` | ``GCCcore/8.2.0`` -``64.2`` | ``GCCcore/8.3.0`` -``65.1`` | ``GCCcore/8.3.0`` -``66.1`` | ``GCCcore/9.3.0`` ``67.1`` | ``GCCcore/10.2.0`` ``69.1`` | ``GCCcore/10.3.0`` ``69.1`` | ``GCCcore/11.2.0`` @@ -24,6 +18,7 @@ version | toolchain ``73.2`` | ``GCCcore/12.3.0`` ``74.1`` | ``GCCcore/13.2.0`` ``75.1`` | ``GCCcore/13.3.0`` +``76.1`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/IDBA-UD.md b/docs/version-specific/supported-software/i/IDBA-UD.md index 85eeb9c67a..6fedce4be5 100644 --- a/docs/version-specific/supported-software/i/IDBA-UD.md +++ b/docs/version-specific/supported-software/i/IDBA-UD.md @@ -13,11 +13,7 @@ version | toolchain ``1.1.3`` | ``GCC/10.2.0`` ``1.1.3`` | ``GCC/10.3.0`` ``1.1.3`` | ``GCC/11.2.0`` -``1.1.3`` | ``GCC/8.2.0-2.31.1`` -``1.1.3`` | ``GCC/8.3.0`` -``1.1.3`` | ``GCC/9.3.0`` -``1.1.3`` | ``foss/2018a`` -``1.1.3`` | ``foss/2018b`` +``1.1.3`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/IEntropy.md b/docs/version-specific/supported-software/i/IEntropy.md index 2e92c24535..6b790bfd8d 100644 --- a/docs/version-specific/supported-software/i/IEntropy.md +++ b/docs/version-specific/supported-software/i/IEntropy.md @@ -4,7 +4,7 @@ search: --- # IEntropy -Here, by deriving entropy decomposition formula, we proposed a feature selection method, intrinsic entropy (IE) model, to identify the informative genes for accurately clustering analysis. +Here, by deriving entropy decomposition formula, we proposed a feature selection method, intrinsic entropy (IE) model, to identify the informative genes for accurately clustering analysis. *homepage*: diff --git a/docs/version-specific/supported-software/i/IGMPlot.md b/docs/version-specific/supported-software/i/IGMPlot.md index 6841da0d7e..3887f3de8e 100644 --- a/docs/version-specific/supported-software/i/IGMPlot.md +++ b/docs/version-specific/supported-software/i/IGMPlot.md @@ -10,8 +10,6 @@ IGMPlot is a free open-source program developed to identify molecular interactio version | toolchain --------|---------- -``2.4.2`` | ``GCC/8.3.0`` -``2.4.2`` | ``iccifort/2019.5.281`` ``2.6.9b`` | ``GCC/11.2.0`` diff --git a/docs/version-specific/supported-software/i/IGV.md b/docs/version-specific/supported-software/i/IGV.md index 79870493cf..d6f97b3544 100644 --- a/docs/version-specific/supported-software/i/IGV.md +++ b/docs/version-specific/supported-software/i/IGV.md @@ -13,9 +13,7 @@ version | versionsuffix | toolchain ``2.12.3`` | ``-Java-11`` | ``system`` ``2.16.0`` | ``-Java-11`` | ``system`` ``2.17.4`` | ``-Java-17`` | ``system`` -``2.3.68`` | ``-Java-1.7.0_80`` | ``system`` -``2.3.80`` | ``-Java-1.7.0_80`` | ``system`` -``2.5.0`` | ``-Java-11`` | ``system`` +``2.19.1`` | ``-Java-21`` | ``system`` ``2.8.0`` | ``-Java-11`` | ``system`` ``2.9.4`` | ``-Java-11`` | ``system`` diff --git a/docs/version-specific/supported-software/i/IGVTools.md b/docs/version-specific/supported-software/i/IGVTools.md deleted file mode 100644 index 7832ac05b4..0000000000 --- a/docs/version-specific/supported-software/i/IGVTools.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# IGVTools - -This package contains command line utilities for preprocessing, computing feature count density (coverage), sorting, and indexing data files. See also http://www.broadinstitute.org/software/igv/igvtools_commandline. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.3.68`` | ``-Java-1.7.0_80`` | ``system`` -``2.3.72`` | ``-Java-1.7.0_80`` | ``system`` -``2.3.75`` | ``-Java-1.7.0_80`` | ``system`` -``2.4.18`` | ``-Java-1.8`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/ILAMB.md b/docs/version-specific/supported-software/i/ILAMB.md deleted file mode 100644 index 07123c135c..0000000000 --- a/docs/version-specific/supported-software/i/ILAMB.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ILAMB - -The International Land Model Benchmarking (ILAMB) project is a model-data intercomparison and integration project designed to improve the performance of land models and, in parallel, improve the design of new measurement campaigns to reduce uncertainties associated with key land surface processes. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.5`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/IMB.md b/docs/version-specific/supported-software/i/IMB.md index 07a9f37261..ae07a1b346 100644 --- a/docs/version-specific/supported-software/i/IMB.md +++ b/docs/version-specific/supported-software/i/IMB.md @@ -10,19 +10,12 @@ The Intel MPI Benchmarks perform a set of MPI performance measurements for point version | toolchain --------|---------- -``2018.1`` | ``intel/2017a`` -``2019.3`` | ``gompi/2019a`` -``2019.3`` | ``iimpi/2019a`` ``2021.3`` | ``gompi/2020b`` ``2021.3`` | ``gompi/2021b`` ``2021.3`` | ``gompi/2022a`` ``2021.3`` | ``gompi/2022b`` ``2021.3`` | ``iimpi/2022a`` ``2021.3`` | ``iimpi/2022b`` -``4.1`` | ``foss/2016a`` -``4.1`` | ``foss/2017a`` -``4.1`` | ``intel/2017.02`` -``4.1`` | ``intel/2017a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/IMOD.md b/docs/version-specific/supported-software/i/IMOD.md index 9878655f99..53ceaab2cd 100644 --- a/docs/version-specific/supported-software/i/IMOD.md +++ b/docs/version-specific/supported-software/i/IMOD.md @@ -8,11 +8,10 @@ IMOD is a set of image processing, modeling and display programs used for tomogr *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.11.5`` | | ``foss/2020b`` -``4.11.5`` | | ``fosscuda/2020b`` -``4.7.15`` | ``_RHEL6-64_CUDA6.0`` | ``system`` +version | toolchain +--------|---------- +``4.11.5`` | ``foss/2020b`` +``4.11.5`` | ``fosscuda/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/IMa2.md b/docs/version-specific/supported-software/i/IMa2.md deleted file mode 100644 index 7dca38f626..0000000000 --- a/docs/version-specific/supported-software/i/IMa2.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# IMa2 - -IMa2 is a progam for population genetic analysis that can handle two or more populations. - -*homepage*: - -version | toolchain ---------|---------- -``8.27.12`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/IMa2p.md b/docs/version-specific/supported-software/i/IMa2p.md deleted file mode 100644 index cd4c34e899..0000000000 --- a/docs/version-specific/supported-software/i/IMa2p.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# IMa2p - -IMa2p is a parallel implementation of IMa2, using OpenMPI-C++ - a Bayesian MCMC based method for inferring population demography under the IM (Isolation with Migration) model. http://dx.doi.org/10.1111/1755-0998.12437 - -*homepage*: - -version | toolchain ---------|---------- -``20151123`` | ``foss/2016a`` -``20160804`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/INTEGRATE-Neo.md b/docs/version-specific/supported-software/i/INTEGRATE-Neo.md deleted file mode 100644 index d0c8b153d1..0000000000 --- a/docs/version-specific/supported-software/i/INTEGRATE-Neo.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# INTEGRATE-Neo - -INTEGRATE-Neo is a gene fusion neoantigen discovering tool using next-generation sequencing data. It is written in C++ and Python. - -*homepage*: <> - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.1`` | ``-Python-3.6.6`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/INTEGRATE.md b/docs/version-specific/supported-software/i/INTEGRATE.md deleted file mode 100644 index 7bab9c3b88..0000000000 --- a/docs/version-specific/supported-software/i/INTEGRATE.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# INTEGRATE - -INTEGRATE is a tool calling gene fusions with exact fusion junctions and genomic breakpoints by combining RNA-Seq and WGS data. It is highly sensitive and accurate by applying a fast split-read mapping algorithm based on Burrow-Wheeler transform. - -*homepage*: - -version | toolchain ---------|---------- -``0.2.6`` | ``GCCcore/8.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/IOR.md b/docs/version-specific/supported-software/i/IOR.md index 84438f954d..e4522c5c41 100644 --- a/docs/version-specific/supported-software/i/IOR.md +++ b/docs/version-specific/supported-software/i/IOR.md @@ -6,16 +6,14 @@ search: The IOR software is used for benchmarking parallel file systems using POSIX, MPIIO, or HDF5 interfaces. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0.1`` | ``-mpiio`` | ``foss/2016a`` -``3.2.1`` | | ``gompi/2019b`` -``3.3.0`` | | ``gompi/2020b`` -``3.3.0`` | | ``gompi/2021a`` -``3.3.0`` | | ``gompi/2022a`` -``4.0.0`` | | ``gompi/2023b`` +version | toolchain +--------|---------- +``3.3.0`` | ``gompi/2020b`` +``3.3.0`` | ``gompi/2021a`` +``3.3.0`` | ``gompi/2022a`` +``4.0.0`` | ``gompi/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/IOzone.md b/docs/version-specific/supported-software/i/IOzone.md deleted file mode 100644 index b428b97e28..0000000000 --- a/docs/version-specific/supported-software/i/IOzone.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# IOzone - -IOzone is a filesystem benchmark tool. The benchmark generates and measures a variety of file operations. Iozone has been ported to many machines and runs under many operating systems. - -*homepage*: - -version | toolchain ---------|---------- -``3.434`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/IPM.md b/docs/version-specific/supported-software/i/IPM.md deleted file mode 100644 index 407c1fa269..0000000000 --- a/docs/version-specific/supported-software/i/IPM.md +++ /dev/null @@ -1,21 +0,0 @@ ---- -search: - boost: 0.5 ---- -# IPM - -IPM is a portable profiling infrastructure for parallel codes. It provides a low-overhead profile of application performance and resource utilization in a parallel program. Communication, computation, and IO are the primary focus. - -*homepage*: - -version | toolchain ---------|---------- -``2.0.6`` | ``gompi/2019b`` -``2.0.6`` | ``gompi/2020a`` -``2.0.6`` | ``iimpi/2019b`` -``2.0.6`` | ``iimpi/2020a`` -``2.0.6`` | ``iompi/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/IPy.md b/docs/version-specific/supported-software/i/IPy.md deleted file mode 100644 index 26679c008e..0000000000 --- a/docs/version-specific/supported-software/i/IPy.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# IPy - -Class and tools for handling of IPv4 and IPv6 addresses and networks - -*homepage*: - -version | toolchain ---------|---------- -``0.83`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/IPython.md b/docs/version-specific/supported-software/i/IPython.md index 5fce971f23..2abeb7ec49 100644 --- a/docs/version-specific/supported-software/i/IPython.md +++ b/docs/version-specific/supported-software/i/IPython.md @@ -10,54 +10,15 @@ IPython provides a rich architecture for interactive computing with: Powerful i version | versionsuffix | toolchain --------|---------------|---------- -``3.2.3`` | ``-Python-2.7.11`` | ``foss/2016a`` -``3.2.3`` | ``-Python-2.7.11`` | ``intel/2016a`` -``4.2.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``5.0.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``5.0.0`` | ``-Python-3.5.1`` | ``foss/2016a`` -``5.1.0`` | ``-Python-2.7.12`` | ``foss/2016b`` -``5.1.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``5.1.0`` | ``-Python-3.5.2`` | ``intel/2016b`` ``5.10.0`` | ``-Python-2.7.18`` | ``foss/2021b`` -``5.2.2`` | ``-Python-2.7.12`` | ``intel/2016b`` -``5.3.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``5.7.0`` | ``-Python-2.7.14`` | ``foss/2018a`` -``5.7.0`` | ``-Python-2.7.14`` | ``intel/2018a`` -``5.8.0`` | ``-Python-2.7.14`` | ``foss/2017b`` -``5.8.0`` | ``-Python-3.6.3`` | ``foss/2017b`` -``5.8.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``5.8.0`` | ``-Python-2.7.15`` | ``foss/2019a`` -``5.8.0`` | ``-Python-2.7.14`` | ``fosscuda/2017b`` -``5.8.0`` | ``-Python-3.6.3`` | ``fosscuda/2017b`` -``5.8.0`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` -``5.8.0`` | ``-Python-2.7.15`` | ``fosscuda/2019a`` -``5.8.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``5.8.0`` | ``-Python-3.6.3`` | ``intel/2017b`` -``5.8.0`` | ``-Python-2.7.15`` | ``intel/2018b`` -``5.8.0`` | ``-Python-2.7.14`` | ``intelcuda/2017b`` -``5.8.0`` | ``-Python-3.6.3`` | ``intelcuda/2017b`` -``6.2.1`` | ``-Python-3.6.4`` | ``foss/2017a`` -``6.3.1`` | ``-Python-3.6.4`` | ``intel/2018a`` -``6.4.0`` | ``-Python-3.6.4`` | ``foss/2018a`` -``7.13.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``7.13.0`` | ``-Python-3.8.2`` | ``intel/2020a`` -``7.15.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``7.15.0`` | ``-Python-3.8.2`` | ``intel/2020a`` ``7.18.1`` | | ``GCCcore/10.2.0`` -``7.2.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``7.2.0`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` -``7.2.0`` | ``-Python-3.6.6`` | ``intel/2018b`` ``7.25.0`` | | ``GCCcore/10.3.0`` ``7.26.0`` | | ``GCCcore/11.2.0`` -``7.7.0`` | ``-Python-3.7.2`` | ``foss/2019a`` -``7.7.0`` | ``-Python-3.7.2`` | ``fosscuda/2019a`` -``7.7.0`` | ``-Python-3.7.2`` | ``intel/2019a`` -``7.9.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``7.9.0`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``7.9.0`` | ``-Python-3.7.4`` | ``intel/2019b`` ``8.14.0`` | | ``GCCcore/12.2.0`` ``8.14.0`` | | ``GCCcore/12.3.0`` ``8.17.2`` | | ``GCCcore/13.2.0`` +``8.27.0`` | | ``GCCcore/13.3.0`` +``8.28.0`` | | ``GCCcore/13.3.0`` ``8.5.0`` | | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/i/IQ-TREE.md b/docs/version-specific/supported-software/i/IQ-TREE.md index 16e90e89a7..4e4bdebe76 100644 --- a/docs/version-specific/supported-software/i/IQ-TREE.md +++ b/docs/version-specific/supported-software/i/IQ-TREE.md @@ -8,22 +8,17 @@ Efficient phylogenomic software by maximum likelihood *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.5.5`` | ``-omp-mpi`` | ``foss/2016a`` -``1.6.12`` | | ``foss/2018b`` -``1.6.12`` | | ``foss/2020a`` -``1.6.12`` | | ``intel/2019b`` -``1.6.6`` | | ``intel/2018a`` -``2.1.2`` | | ``foss/2020a`` -``2.1.2`` | | ``gompi/2020b`` -``2.1.3`` | | ``gompi/2021a`` -``2.2.1`` | | ``gompi/2021b`` -``2.2.2.3`` | | ``gompi/2022a`` -``2.2.2.6`` | | ``gompi/2022a`` -``2.2.2.6`` | | ``gompi/2022b`` -``2.2.2.7`` | | ``gompi/2023a`` -``2.3.5`` | | ``gompi/2023a`` +version | toolchain +--------|---------- +``2.1.2`` | ``gompi/2020b`` +``2.1.3`` | ``gompi/2021a`` +``2.2.1`` | ``gompi/2021b`` +``2.2.2.3`` | ``gompi/2022a`` +``2.2.2.6`` | ``gompi/2022a`` +``2.2.2.6`` | ``gompi/2022b`` +``2.2.2.7`` | ``gompi/2023a`` +``2.3.5`` | ``gompi/2023a`` +``2.3.6`` | ``gompi/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/IRkernel.md b/docs/version-specific/supported-software/i/IRkernel.md index 32e595cb6f..a777363437 100644 --- a/docs/version-specific/supported-software/i/IRkernel.md +++ b/docs/version-specific/supported-software/i/IRkernel.md @@ -4,18 +4,12 @@ search: --- # IRkernel -The R kernel for the 'Jupyter' environment executes R code which the front-end (Jupyter Notebook or other front-ends) submits to the kernel via the network. +The R kernel for the 'Jupyter' environment executes R code which the front-end (Jupyter Notebook or other front-ends) submits to the kernel via the network. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``0.8.15`` | ``-R-3.4.3-Python-2.7.14`` | ``foss/2017b`` -``0.8.15`` | ``-R-3.4.3-Python-2.7.14`` | ``intel/2017b`` -``1.1`` | ``-R-3.6.2-Python-3.7.4`` | ``foss/2019b`` -``1.1`` | ``-R-3.6.3-Python-3.8.2`` | ``foss/2020a`` -``1.1`` | ``-R-3.6.2-Python-3.7.4`` | ``fosscuda/2019b`` -``1.2`` | ``-R-4.0.0-Python-3.8.2`` | ``foss/2020a`` ``1.2`` | ``-R-4.1.0`` | ``foss/2021a`` ``1.3`` | ``-R-4.2.0`` | ``foss/2021b`` ``1.3.2`` | ``-R-4.2.1`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/c/CaSpER.md b/docs/version-specific/supported-software/i/ISCE2.md similarity index 63% rename from docs/version-specific/supported-software/c/CaSpER.md rename to docs/version-specific/supported-software/i/ISCE2.md index 066cb521d2..f9b4ae49dd 100644 --- a/docs/version-specific/supported-software/c/CaSpER.md +++ b/docs/version-specific/supported-software/i/ISCE2.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# CaSpER +# ISCE2 -CaSpER is a signal processing approach for identification, visualization, and integrative analysis of focal and large-scale CNV events in multiscale resolution using either bulk or single-cell RNA sequencing data. +ISCE is a framework designed for the purpose of processing Interferometric Synthetic Aperture Radar (InSAR) data. The framework aspects of it have been designed as a general software development framework. It may have additional utility in a general sense for building other types of software packages. In its InSAR aspect ISCE supports data from many space-borne satellites and one air-borne platform. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.0`` | ``foss/2019b`` +``2.6.3`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/ISL.md b/docs/version-specific/supported-software/i/ISL.md index 8f62a7642b..ae8abe0a6d 100644 --- a/docs/version-specific/supported-software/i/ISL.md +++ b/docs/version-specific/supported-software/i/ISL.md @@ -10,15 +10,8 @@ isl is a library for manipulating sets and relations of integer points bounded b version | toolchain --------|---------- -``0.14`` | ``GCC/4.9.2`` -``0.15`` | ``GCC/4.9.3-2.25`` -``0.15`` | ``GNU/4.9.3-2.25`` -``0.15`` | ``foss/2016a`` -``0.16`` | ``GCC/4.9.3-2.25`` -``0.17`` | ``foss/2016a`` ``0.23`` | ``GCCcore/10.2.0`` ``0.23`` | ``GCCcore/10.3.0`` -``0.23`` | ``GCCcore/9.3.0`` ``0.24`` | ``GCCcore/11.2.0`` ``0.24`` | ``GCCcore/11.3.0`` ``0.26`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/i/ITK.md b/docs/version-specific/supported-software/i/ITK.md index 2a619f5dc2..25664efa24 100644 --- a/docs/version-specific/supported-software/i/ITK.md +++ b/docs/version-specific/supported-software/i/ITK.md @@ -8,30 +8,16 @@ Insight Segmentation and Registration Toolkit (ITK) provides an extensive suite *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.12.2`` | ``-Python-2.7.12`` | ``foss/2016b`` -``4.13.0`` | ``-Python-2.7.14`` | ``foss/2018a`` -``4.13.0`` | ``-Python-3.6.4`` | ``foss/2018a`` -``4.13.1`` | ``-Python-2.7.14`` | ``foss/2018a`` -``4.13.1`` | ``-Python-3.6.4`` | ``foss/2018a`` -``4.13.1`` | ``-Python-2.7.15`` | ``foss/2018b`` -``4.13.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``4.13.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``5.0.1`` | ``-Python-3.7.2`` | ``foss/2019a`` -``5.0.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``5.0b01`` | ``-Python-3.6.6`` | ``foss/2018b`` -``5.1.2`` | ``-Python-3.8.2`` | ``foss/2020a`` -``5.1.2`` | | ``foss/2020a`` -``5.1.2`` | ``-Python-3.8.2`` | ``fosscuda/2020a`` -``5.1.2`` | | ``fosscuda/2020a`` -``5.2.1`` | | ``foss/2020b`` -``5.2.1`` | | ``foss/2021a`` -``5.2.1`` | | ``foss/2021b`` -``5.2.1`` | | ``foss/2022a`` -``5.2.1`` | | ``fosscuda/2020b`` -``5.3.0`` | | ``foss/2022b`` -``5.3.0`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``5.2.1`` | ``foss/2020b`` +``5.2.1`` | ``foss/2021a`` +``5.2.1`` | ``foss/2021b`` +``5.2.1`` | ``foss/2022a`` +``5.2.1`` | ``fosscuda/2020b`` +``5.3.0`` | ``foss/2022b`` +``5.3.0`` | ``foss/2023a`` +``5.4.0`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/ITSTool.md b/docs/version-specific/supported-software/i/ITSTool.md index b0dc4fe166..5f79bbef4d 100644 --- a/docs/version-specific/supported-software/i/ITSTool.md +++ b/docs/version-specific/supported-software/i/ITSTool.md @@ -4,17 +4,14 @@ search: --- # ITSTool -ITS Tool allows you to translate your XML documents with PO files, using rules from the W3C Internationalization Tag Set (ITS) to determine what to translate and how to separate it into PO file messages. +ITS Tool allows you to translate your XML documents with PO files -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0.5`` | ``-Python-2.7.15`` | ``foss/2018b`` -``2.0.5`` | ``-Python-2.7.14`` | ``intel/2018a`` -``2.0.6`` | ``-Python-3.7.2`` | ``GCCcore/8.2.0`` -``2.0.7`` | | ``GCCcore/11.3.0`` -``2.0.7`` | | ``GCCcore/12.3.0`` +version | toolchain +--------|---------- +``2.0.7`` | ``GCCcore/11.3.0`` +``2.0.7`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/ITSx.md b/docs/version-specific/supported-software/i/ITSx.md index b2e71be968..4599e07bf2 100644 --- a/docs/version-specific/supported-software/i/ITSx.md +++ b/docs/version-specific/supported-software/i/ITSx.md @@ -10,7 +10,6 @@ ITSx: Improved software detection and extraction of ITS1 and ITS2 from ribosomal version | toolchain --------|---------- -``1.1.2`` | ``GCCcore/9.3.0`` ``1.1.3`` | ``GCCcore/10.3.0`` ``1.1.3`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/i/ImageJ.md b/docs/version-specific/supported-software/i/ImageJ.md index c5b2b9a5db..11c5554a76 100644 --- a/docs/version-specific/supported-software/i/ImageJ.md +++ b/docs/version-specific/supported-software/i/ImageJ.md @@ -10,10 +10,7 @@ Image Processing and Analysis in Java version | versionsuffix | toolchain --------|---------------|---------- -``1.51a`` | | ``system`` -``1.51i`` | | ``system`` -``1.51k`` | | ``system`` -``1.52q`` | ``-Java-1.8`` | ``system`` +``1.54m`` | ``-Java-11`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/ImageMagick.md b/docs/version-specific/supported-software/i/ImageMagick.md index f8d984aa75..e1bb5ac415 100644 --- a/docs/version-specific/supported-software/i/ImageMagick.md +++ b/docs/version-specific/supported-software/i/ImageMagick.md @@ -6,37 +6,18 @@ search: ImageMagick is a software suite to create, edit, compose, or convert bitmap images -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``6.9.4-8`` | | ``intel/2016a`` -``7.0.1-6`` | | ``intel/2016a`` -``7.0.1-9`` | | ``intel/2016a`` -``7.0.10-1`` | | ``GCCcore/9.3.0`` -``7.0.10-35`` | | ``GCCcore/10.2.0`` -``7.0.11-14`` | | ``GCCcore/10.3.0`` -``7.0.2-9`` | | ``intel/2016a`` -``7.0.3-1`` | | ``intel/2016b`` -``7.0.5-10`` | | ``foss/2016b`` -``7.0.5-4`` | | ``intel/2017a`` -``7.0.7-14`` | | ``foss/2017b`` -``7.0.7-14`` | | ``intel/2017b`` -``7.0.7-15`` | | ``GCCcore/6.4.0`` -``7.0.7-26`` | | ``foss/2018a`` -``7.0.7-30`` | ``-Ghostscript-9.22-cairo-1.14.12`` | ``GCCcore/6.4.0`` -``7.0.7-30`` | | ``GCCcore/6.4.0`` -``7.0.7-39`` | ``-Ghostscript-9.23-cairo-1.14.12`` | ``GCCcore/6.4.0`` -``7.0.7-8`` | ``-JasPer-1.900.1`` | ``intel/2017a`` -``7.0.8-11`` | | ``GCCcore/7.3.0`` -``7.0.8-46`` | | ``GCCcore/8.2.0`` -``7.0.9-5`` | | ``GCCcore/8.3.0`` -``7.1.0-37`` | | ``GCCcore/11.3.0`` -``7.1.0-4`` | | ``GCCcore/11.2.0`` -``7.1.0-53`` | | ``GCCcore/12.2.0`` -``7.1.1-15`` | | ``GCCcore/12.3.0`` -``7.1.1-34`` | | ``GCCcore/13.2.0`` -``7.1.1-38`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``7.0.10-35`` | ``GCCcore/10.2.0`` +``7.0.11-14`` | ``GCCcore/10.3.0`` +``7.1.0-37`` | ``GCCcore/11.3.0`` +``7.1.0-4`` | ``GCCcore/11.2.0`` +``7.1.0-53`` | ``GCCcore/12.2.0`` +``7.1.1-15`` | ``GCCcore/12.3.0`` +``7.1.1-34`` | ``GCCcore/13.2.0`` +``7.1.1-38`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/Imlib2.md b/docs/version-specific/supported-software/i/Imlib2.md index f6604dedbc..70295201c3 100644 --- a/docs/version-specific/supported-software/i/Imlib2.md +++ b/docs/version-specific/supported-software/i/Imlib2.md @@ -10,7 +10,7 @@ This is the Imlib 2 library - a library that does image file loading and saving version | toolchain --------|---------- -``1.5.1`` | ``GCCcore/6.4.0`` +``1.12.3`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/Inelastica.md b/docs/version-specific/supported-software/i/Inelastica.md deleted file mode 100644 index 13bf81f94d..0000000000 --- a/docs/version-specific/supported-software/i/Inelastica.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Inelastica - -Python package for eigenchannels, vibrations and inelastic electron transport based on SIESTA/TranSIESTA DFT. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.3.5`` | ``-Python-2.7.15`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/Infernal.md b/docs/version-specific/supported-software/i/Infernal.md index c62cca0df4..f517f201d2 100644 --- a/docs/version-specific/supported-software/i/Infernal.md +++ b/docs/version-specific/supported-software/i/Infernal.md @@ -10,15 +10,12 @@ Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases version | toolchain --------|---------- -``1.1.2`` | ``foss/2016b`` -``1.1.2`` | ``foss/2018b`` -``1.1.2`` | ``intel/2017a`` -``1.1.2`` | ``intel/2018b`` ``1.1.4`` | ``foss/2020b`` ``1.1.4`` | ``foss/2021a`` ``1.1.4`` | ``foss/2021b`` ``1.1.4`` | ``foss/2022a`` ``1.1.4`` | ``foss/2022b`` +``1.1.5`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/Infomap.md b/docs/version-specific/supported-software/i/Infomap.md deleted file mode 100644 index 7c1f5fe5c7..0000000000 --- a/docs/version-specific/supported-software/i/Infomap.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Infomap - -Multi-level network clustering based on the Map equation. - -*homepage*: - -version | toolchain ---------|---------- -``20190308`` | ``GCC/8.2.0-2.31.1`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/Inspector.md b/docs/version-specific/supported-software/i/Inspector.md index fb00f2aab3..2575ef8d01 100644 --- a/docs/version-specific/supported-software/i/Inspector.md +++ b/docs/version-specific/supported-software/i/Inspector.md @@ -4,26 +4,17 @@ search: --- # Inspector -Intel Inspector XE 2013 is an easy to use memory error checker and thread checker for serial and parallel applications +Intel Inspector is a dynamic memory and threading error checking tool for users developing serial and parallel applications -*homepage*: +*homepage*: version | toolchain --------|---------- -``2013_update6`` | ``system`` -``2013_update7`` | ``system`` -``2016_update3`` | ``system`` -``2017_update1`` | ``system`` -``2017_update2`` | ``system`` -``2018_update1`` | ``system`` -``2018_update2`` | ``system`` -``2018_update3`` | ``system`` -``2019_update2`` | ``system`` -``2019_update5`` | ``system`` ``2021.4.0`` | ``system`` ``2022.0.0`` | ``system`` ``2022.1.0`` | ``system`` ``2023.2.0`` | ``system`` +``2024.2.0`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/IntaRNA.md b/docs/version-specific/supported-software/i/IntaRNA.md deleted file mode 100644 index 2ff389f079..0000000000 --- a/docs/version-specific/supported-software/i/IntaRNA.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# IntaRNA - -Efficient RNA-RNA interaction prediction incorporating accessibility and seeding of interaction sites - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.3.1`` | ``-Python-2.7.15`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/IntelClusterChecker.md b/docs/version-specific/supported-software/i/IntelClusterChecker.md index 4f33ccabcd..72cd8af1b0 100644 --- a/docs/version-specific/supported-software/i/IntelClusterChecker.md +++ b/docs/version-specific/supported-software/i/IntelClusterChecker.md @@ -4,13 +4,12 @@ search: --- # IntelClusterChecker -Verifies cluster components work together ― for - better uptime and productivity and lower total - cost of ownership (TCO) +Intel Cluster Checker verifies the configuration and performance of Linux OS-based clusters. Anomalies and performance differences can be identified and practical resolutions provided. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2017.1.016`` | ``system`` ``2021.5.0`` | ``system`` diff --git a/docs/version-specific/supported-software/i/IntelPython.md b/docs/version-specific/supported-software/i/IntelPython.md deleted file mode 100644 index 1c533fe46c..0000000000 --- a/docs/version-specific/supported-software/i/IntelPython.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# IntelPython - -Intel® Distribution for Python. Powered by Anaconda. Accelerating Python* performance on modern architectures from Intel. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.7.15`` | ``-2019.2.066`` | ``system`` -``3.6.8`` | ``-2019.2.066`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/InterOp.md b/docs/version-specific/supported-software/i/InterOp.md index dd8b5bc983..0356a2f0a3 100644 --- a/docs/version-specific/supported-software/i/InterOp.md +++ b/docs/version-specific/supported-software/i/InterOp.md @@ -11,6 +11,7 @@ The Illumina InterOp libraries are a set of common routines used for reading Int version | toolchain --------|---------- ``1.2.4`` | ``foss/2021a`` +``1.3.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/InterProScan.md b/docs/version-specific/supported-software/i/InterProScan.md index ca34cbaba3..f56428f9fd 100644 --- a/docs/version-specific/supported-software/i/InterProScan.md +++ b/docs/version-specific/supported-software/i/InterProScan.md @@ -6,13 +6,10 @@ search: InterProScan is a sequence analysis application (nucleotide and protein sequences) that combines different protein signature recognition methods into one resource. -*homepage*: +*homepage*: version | toolchain --------|---------- -``5.26-65.0`` | ``intel/2017b`` -``5.27-66.0`` | ``intel/2017b`` -``5.28-67.0`` | ``intel/2018a`` ``5.52-86.0`` | ``GCCcore/10.3.0`` ``5.55-88.0`` | ``foss/2021a`` ``5.62-94.0`` | ``foss/2022b`` diff --git a/docs/version-specific/supported-software/i/Ipopt.md b/docs/version-specific/supported-software/i/Ipopt.md deleted file mode 100644 index c95cfc247f..0000000000 --- a/docs/version-specific/supported-software/i/Ipopt.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Ipopt - -Ipopt (Interior Point OPTimizer, pronounced eye-pea-Opt) is a software package for large-scale nonlinear optimization. - -*homepage*: - -version | toolchain ---------|---------- -``3.12.13`` | ``intel/2019a`` -``3.12.9`` | ``foss/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/IronPython.md b/docs/version-specific/supported-software/i/IronPython.md deleted file mode 100644 index 4ef84207b6..0000000000 --- a/docs/version-specific/supported-software/i/IronPython.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# IronPython - -IronPython is an open-source implementation of the Python programming language which is tightly integrated with the .NET Framework. IronPython can use the .NET Framework and Python libraries, and other .NET languages can use Python code just as easily. - -*homepage*: - -version | toolchain ---------|---------- -``2.7`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/IsoNet.md b/docs/version-specific/supported-software/i/IsoNet.md index 0923c9374f..b39aaa107f 100644 --- a/docs/version-specific/supported-software/i/IsoNet.md +++ b/docs/version-specific/supported-software/i/IsoNet.md @@ -4,7 +4,7 @@ search: --- # IsoNet -IsoNet stands for for ISOtropic reconstructioN of Electron Tomography. It trains deep convolutional neural networks to reconstruct meaningful contents in the mis sing wedge for electron tomography, and to increase signal-to-noise ratio, using the information learned from the original tomogram. The software requires tomograms as input. Observing at about 30A resolution, the IsoNet generated tomograms are largely isotropic. +IsoNet stands for for ISOtropic reconstructioN of Electron Tomography. It trains deep convolutional neural networks to reconstruct meaningful contents in the mis sing wedge for electron tomography, and to increase signal-to-noise ratio, using the information learned from the original tomogram. The software requires tomograms as input. Observing at about 30A resolution, the IsoNet generated tomograms are largely isotropic. *homepage*: diff --git a/docs/version-specific/supported-software/i/i-PI.md b/docs/version-specific/supported-software/i/i-PI.md deleted file mode 100644 index b126e1fde8..0000000000 --- a/docs/version-specific/supported-software/i/i-PI.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# i-PI - -A Python wrapper for (ab initio) (path integrals) molecular dynamics - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0-20160213`` | ``-Python-2.7.11`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/i-cisTarget.md b/docs/version-specific/supported-software/i/i-cisTarget.md deleted file mode 100644 index dfb562c7ff..0000000000 --- a/docs/version-specific/supported-software/i/i-cisTarget.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# i-cisTarget - -An integrative genomics method for the prediction of regulatory features and cis-regulatory modules in Human, Mouse, and Fly - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20160602`` | ``-Python-2.7.11`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/iCount.md b/docs/version-specific/supported-software/i/iCount.md deleted file mode 100644 index 02d379d631..0000000000 --- a/docs/version-specific/supported-software/i/iCount.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# iCount - -iCount: protein-RNA interaction analysis is a Python module and associated command-line interface (CLI), which provides all the commands needed to process iCLIP data on protein-RNA interactions. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20180820`` | ``-Python-3.6.6`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/iVar.md b/docs/version-specific/supported-software/i/iVar.md index 847c55aa7e..ddaee1bcbc 100644 --- a/docs/version-specific/supported-software/i/iVar.md +++ b/docs/version-specific/supported-software/i/iVar.md @@ -10,9 +10,7 @@ iVar is a computational package that contains functions broadly useful for viral version | toolchain --------|---------- -``1.0.1`` | ``foss/2018b`` ``1.3.1`` | ``GCC/10.2.0`` -``1.3.1`` | ``GCC/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/icc.md b/docs/version-specific/supported-software/i/icc.md deleted file mode 100644 index b1ff5965d7..0000000000 --- a/docs/version-specific/supported-software/i/icc.md +++ /dev/null @@ -1,42 +0,0 @@ ---- -search: - boost: 0.5 ---- -# icc - -C and C++ compiler from Intel - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2016.0.109`` | ``-GCC-4.9.3-2.25`` | ``system`` -``2016.0.109`` | | ``system`` -``2016.1.150`` | ``-GCC-4.9.3-2.25`` | ``system`` -``2016.2.181`` | ``-GCC-4.9.3-2.25`` | ``system`` -``2016.2.181`` | ``-GCC-5.3.0-2.26`` | ``system`` -``2016.3.210`` | ``-GCC-4.9.3-2.25`` | ``system`` -``2016.3.210`` | ``-GCC-5.3.0-2.26`` | ``system`` -``2016.3.210`` | ``-GCC-5.4.0-2.26`` | ``system`` -``2017.0.098`` | ``-GCC-5.4.0-2.26`` | ``system`` -``2017.1.132`` | ``-GCC-5.4.0-2.26`` | ``system`` -``2017.1.132`` | ``-GCC-6.3.0-2.27`` | ``system`` -``2017.2.174`` | ``-GCC-6.3.0-2.27`` | ``system`` -``2017.4.196`` | ``-GCC-6.4.0-2.28`` | ``system`` -``2017.5.239`` | ``-GCC-6.4.0-2.28`` | ``system`` -``2017.6.256`` | ``-GCC-6.4.0-2.28`` | ``system`` -``2017.7.259`` | ``-GCC-6.4.0-2.28`` | ``system`` -``2018.0.128`` | ``-GCC-6.4.0-2.28`` | ``system`` -``2018.1.163`` | ``-GCC-6.4.0-2.28`` | ``system`` -``2018.2.199`` | ``-GCC-6.4.0-2.28`` | ``system`` -``2018.3.222`` | ``-GCC-7.3.0-2.30`` | ``system`` -``2018.5.274`` | ``-GCC-7.3.0-2.30`` | ``system`` -``2019.0.117`` | ``-GCC-8.2.0-2.31.1`` | ``system`` -``2019.1.144`` | ``-GCC-8.2.0-2.31.1`` | ``system`` -``2019.2.187`` | ``-GCC-8.2.0-2.31.1`` | ``system`` -``2019.3.199`` | ``-GCC-8.3.0-2.32`` | ``system`` -``system`` | ``-GCC-system-2.29`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/iccifort.md b/docs/version-specific/supported-software/i/iccifort.md index 98b7e5c69f..198cef479d 100644 --- a/docs/version-specific/supported-software/i/iccifort.md +++ b/docs/version-specific/supported-software/i/iccifort.md @@ -4,42 +4,13 @@ search: --- # iccifort -Intel Cluster Toolkit Compiler Edition provides Intel C,C++ and fortran compilers, Intel MPI and Intel MKL +Intel C, C++ & Fortran compilers -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2016.0.109`` | ``-GCC-4.9.3-2.25`` | ``system`` -``2016.0.109`` | | ``system`` -``2016.1.150`` | ``-GCC-4.9.3-2.25`` | ``system`` -``2016.2.181`` | ``-GCC-4.9.3-2.25`` | ``system`` -``2016.2.181`` | ``-GCC-5.3.0-2.26`` | ``system`` -``2016.3.210`` | ``-GCC-4.9.3-2.25`` | ``system`` -``2016.3.210`` | ``-GCC-5.3.0-2.26`` | ``system`` -``2016.3.210`` | ``-GCC-5.4.0-2.26`` | ``system`` -``2017.0.098`` | ``-GCC-5.4.0-2.26`` | ``system`` -``2017.1.132`` | ``-GCC-5.4.0-2.26`` | ``system`` -``2017.1.132`` | ``-GCC-6.3.0-2.27`` | ``system`` -``2017.2.174`` | ``-GCC-6.3.0-2.27`` | ``system`` -``2017.4.196`` | ``-GCC-6.4.0-2.28`` | ``system`` -``2017.5.239`` | ``-GCC-6.4.0-2.28`` | ``system`` -``2018.0.128`` | ``-GCC-6.4.0-2.28`` | ``system`` -``2018.1.163`` | ``-GCC-6.4.0-2.28`` | ``system`` -``2018.2.199`` | ``-GCC-6.4.0-2.28`` | ``system`` -``2018.3.222`` | ``-GCC-7.3.0-2.30`` | ``system`` -``2018.5.274`` | ``-GCC-7.3.0-2.30`` | ``system`` -``2019.0.117`` | ``-GCC-8.2.0-2.31.1`` | ``system`` -``2019.1.144`` | ``-GCC-8.2.0-2.31.1`` | ``system`` -``2019.2.187`` | ``-GCC-8.2.0-2.31.1`` | ``system`` -``2019.3.199`` | ``-GCC-8.3.0-2.32`` | ``system`` -``2019.4.243`` | | ``system`` -``2019.5.281`` | | ``system`` -``2020.0.166`` | ``-GCC-9.2.0`` | ``system`` -``2020.0.166`` | | ``system`` -``2020.1.217`` | | ``system`` -``2020.4.304`` | | ``system`` -``system`` | ``-GCC-system-2.29`` | ``system`` +version | toolchain +--------|---------- +``2020.4.304`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/iccifortcuda.md b/docs/version-specific/supported-software/i/iccifortcuda.md index c484ddf447..e26b8eb590 100644 --- a/docs/version-specific/supported-software/i/iccifortcuda.md +++ b/docs/version-specific/supported-software/i/iccifortcuda.md @@ -4,18 +4,13 @@ search: --- # iccifortcuda -Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL, with CUDA toolkit +Intel C, C++ & Fortran compilers with CUDA toolkit *homepage*: <(none)> -version | versionsuffix | toolchain ---------|---------------|---------- -``2016.10`` | | ``system`` -``2017.4.196`` | ``-GCC-6.4.0-2.28`` | ``system`` -``2019a`` | | ``system`` -``2019b`` | | ``system`` -``2020a`` | | ``system`` -``2020b`` | | ``system`` +version | toolchain +--------|---------- +``2020b`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/ichorCNA.md b/docs/version-specific/supported-software/i/ichorCNA.md index 7e51c939f5..b42963baba 100644 --- a/docs/version-specific/supported-software/i/ichorCNA.md +++ b/docs/version-specific/supported-software/i/ichorCNA.md @@ -10,8 +10,7 @@ ichorCNA is a tool for estimating the fraction of tumor in cell-free DNA from ul version | toolchain --------|---------- -``0.2.0`` | ``foss/2019b`` -``0.3.2-20191219`` | ``foss/2020a`` +``0.3.2-20191219`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/icmake.md b/docs/version-specific/supported-software/i/icmake.md deleted file mode 100644 index a044fc7e68..0000000000 --- a/docs/version-specific/supported-software/i/icmake.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# icmake - -Icmake is a hybrid between a 'make' utility and a 'shell script' language. Originally, it was written to provide a useful tool for automatic program maintenance and system administrative tasks on old MS-DOS platforms. - -*homepage*: - -version | toolchain ---------|---------- -``7.23.02`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/ieeg-cli.md b/docs/version-specific/supported-software/i/ieeg-cli.md deleted file mode 100644 index 1ec33c275c..0000000000 --- a/docs/version-specific/supported-software/i/ieeg-cli.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ieeg-cli - -IEEG.ORG is a collaborative initiative funded by the National Institutes of Neurological Disorders and Stroke. This initiative seeks to advance research towards the understanding of epilepsy by providing a platform for sharing data, tools and expertise between researchers. - -*homepage*: - -version | toolchain ---------|---------- -``1.14.56`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/ifort.md b/docs/version-specific/supported-software/i/ifort.md deleted file mode 100644 index bf54d82728..0000000000 --- a/docs/version-specific/supported-software/i/ifort.md +++ /dev/null @@ -1,42 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ifort - -Fortran compiler from Intel - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2016.0.109`` | ``-GCC-4.9.3-2.25`` | ``system`` -``2016.0.109`` | | ``system`` -``2016.1.150`` | ``-GCC-4.9.3-2.25`` | ``system`` -``2016.2.181`` | ``-GCC-4.9.3-2.25`` | ``system`` -``2016.2.181`` | ``-GCC-5.3.0-2.26`` | ``system`` -``2016.3.210`` | ``-GCC-4.9.3-2.25`` | ``system`` -``2016.3.210`` | ``-GCC-5.3.0-2.26`` | ``system`` -``2016.3.210`` | ``-GCC-5.4.0-2.26`` | ``system`` -``2017.0.098`` | ``-GCC-5.4.0-2.26`` | ``system`` -``2017.1.132`` | ``-GCC-5.4.0-2.26`` | ``system`` -``2017.1.132`` | ``-GCC-6.3.0-2.27`` | ``system`` -``2017.2.174`` | ``-GCC-6.3.0-2.27`` | ``system`` -``2017.4.196`` | ``-GCC-6.4.0-2.28`` | ``system`` -``2017.5.239`` | ``-GCC-6.4.0-2.28`` | ``system`` -``2017.6.256`` | ``-GCC-6.4.0-2.28`` | ``system`` -``2017.7.259`` | ``-GCC-6.4.0-2.28`` | ``system`` -``2018.0.128`` | ``-GCC-6.4.0-2.28`` | ``system`` -``2018.1.163`` | ``-GCC-6.4.0-2.28`` | ``system`` -``2018.2.199`` | ``-GCC-6.4.0-2.28`` | ``system`` -``2018.3.222`` | ``-GCC-7.3.0-2.30`` | ``system`` -``2018.5.274`` | ``-GCC-7.3.0-2.30`` | ``system`` -``2019.0.117`` | ``-GCC-8.2.0-2.31.1`` | ``system`` -``2019.1.144`` | ``-GCC-8.2.0-2.31.1`` | ``system`` -``2019.2.187`` | ``-GCC-8.2.0-2.31.1`` | ``system`` -``2019.3.199`` | ``-GCC-8.3.0-2.32`` | ``system`` -``system`` | ``-GCC-system-2.29`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/igraph.md b/docs/version-specific/supported-software/i/igraph.md index c14c6d1ab8..1ae3132ffc 100644 --- a/docs/version-specific/supported-software/i/igraph.md +++ b/docs/version-specific/supported-software/i/igraph.md @@ -14,11 +14,6 @@ version | toolchain ``0.10.12`` | ``foss/2023b`` ``0.10.3`` | ``foss/2022a`` ``0.10.6`` | ``foss/2022b`` -``0.7.1`` | ``foss/2018b`` -``0.7.1`` | ``intel/2016b`` -``0.7.1`` | ``intel/2017b`` -``0.8.0`` | ``foss/2019b`` -``0.8.2`` | ``foss/2020a`` ``0.8.5`` | ``foss/2020b`` ``0.9.1`` | ``foss/2020b`` ``0.9.1`` | ``fosscuda/2020b`` diff --git a/docs/version-specific/supported-software/i/igv-reports.md b/docs/version-specific/supported-software/i/igv-reports.md deleted file mode 100644 index 99ba60e9db..0000000000 --- a/docs/version-specific/supported-software/i/igv-reports.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# igv-reports - -Python application to generate self-contained igv.js pages that can be opened within a browser with "file" protocol. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.9.8`` | ``-Python-3.7.4`` | ``GCC/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/iimkl.md b/docs/version-specific/supported-software/i/iimkl.md index 64a108a915..d9453d0d49 100644 --- a/docs/version-specific/supported-software/i/iimkl.md +++ b/docs/version-specific/supported-software/i/iimkl.md @@ -10,7 +10,6 @@ Intel C/C++ and Fortran compilers, alongside Intel Math Kernel Library (MKL). version | toolchain --------|---------- -``2018a`` | ``system`` ``2022a`` | ``system`` ``2022b`` | ``system`` ``2023a`` | ``system`` diff --git a/docs/version-specific/supported-software/i/iimpi.md b/docs/version-specific/supported-software/i/iimpi.md index 8ffff367e7..8c6556faf7 100644 --- a/docs/version-specific/supported-software/i/iimpi.md +++ b/docs/version-specific/supported-software/i/iimpi.md @@ -6,58 +6,27 @@ search: Intel C/C++ and Fortran compilers, alongside Intel MPI. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2016.00`` | ``-GCC-4.9.3-2.25`` | ``system`` -``2016.01`` | ``-GCC-4.9.3-2.25`` | ``system`` -``2016.02`` | ``-GCC-4.9.3-2.25`` | ``system`` -``2016.02`` | ``-GCC-5.3.0-2.26`` | ``system`` -``2016.03`` | ``-GCC-4.9.3-2.25`` | ``system`` -``2016.03`` | ``-GCC-5.3.0-2.26`` | ``system`` -``2016.03`` | ``-GCC-5.4.0-2.26`` | ``system`` -``2016b`` | | ``system`` -``2017.00`` | ``-GCC-5.4.0-2.26`` | ``system`` -``2017.01`` | ``-GCC-5.4.0-2.26`` | ``system`` -``2017.02`` | ``-GCC-6.3.0-2.27`` | ``system`` -``2017.09`` | | ``system`` -``2017a`` | | ``system`` -``2017b`` | | ``system`` -``2018.00`` | | ``system`` -``2018.01`` | | ``system`` -``2018.02`` | | ``system`` -``2018.04`` | | ``system`` -``2018a`` | | ``system`` -``2018b`` | | ``system`` -``2019.00`` | | ``system`` -``2019.01`` | | ``system`` -``2019.02`` | | ``system`` -``2019.03`` | | ``system`` -``2019a`` | | ``system`` -``2019b`` | | ``system`` -``2020.00`` | | ``system`` -``2020.06-impi-18.5`` | | ``system`` -``2020.12`` | | ``system`` -``2020a`` | | ``system`` -``2020b`` | | ``system`` -``2021a`` | | ``system`` -``2021b`` | | ``system`` -``2022.00`` | | ``system`` -``2022.05`` | | ``system`` -``2022.09`` | | ``system`` -``2022.11`` | | ``system`` -``2022.12`` | | ``system`` -``2022a`` | | ``system`` -``2022b`` | | ``system`` -``2023.03`` | | ``system`` -``2023.07`` | | ``system`` -``2023.11`` | | ``system`` -``2023a`` | | ``system`` -``2023b`` | | ``system`` -``2024a`` | | ``system`` -``8.1.5`` | ``-GCC-4.9.3-2.25`` | ``system`` -``system`` | ``-GCC-system-2.29`` | ``system`` +version | toolchain +--------|---------- +``2020.12`` | ``system`` +``2020b`` | ``system`` +``2021a`` | ``system`` +``2021b`` | ``system`` +``2022.00`` | ``system`` +``2022.05`` | ``system`` +``2022.09`` | ``system`` +``2022.11`` | ``system`` +``2022.12`` | ``system`` +``2022a`` | ``system`` +``2022b`` | ``system`` +``2023.03`` | ``system`` +``2023.07`` | ``system`` +``2023.11`` | ``system`` +``2023a`` | ``system`` +``2023b`` | ``system`` +``2024a`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/iimpic.md b/docs/version-specific/supported-software/i/iimpic.md index 199a7df75e..f84fb45c51 100644 --- a/docs/version-specific/supported-software/i/iimpic.md +++ b/docs/version-specific/supported-software/i/iimpic.md @@ -4,17 +4,12 @@ search: --- # iimpic -Intel C/C++ and Fortran compilers, alongside Intel MPI. +Intel C/C++ and Fortran compilers, alongside Intel MPI and CUDA. -*homepage*: +*homepage*: <(none)> version | toolchain --------|---------- -``2016.10`` | ``system`` -``2017b`` | ``system`` -``2019a`` | ``system`` -``2019b`` | ``system`` -``2020a`` | ``system`` ``2020b`` | ``system`` diff --git a/docs/version-specific/supported-software/i/imagecodecs.md b/docs/version-specific/supported-software/i/imagecodecs.md index 699b8d0a8c..fcf36a990e 100644 --- a/docs/version-specific/supported-software/i/imagecodecs.md +++ b/docs/version-specific/supported-software/i/imagecodecs.md @@ -14,6 +14,7 @@ version | toolchain ``2022.9.26`` | ``foss/2021a`` ``2022.9.26`` | ``foss/2022a`` ``2024.1.1`` | ``foss/2023a`` +``2024.6.1`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/imageio.md b/docs/version-specific/supported-software/i/imageio.md index f95a73c75b..0d74bd2d55 100644 --- a/docs/version-specific/supported-software/i/imageio.md +++ b/docs/version-specific/supported-software/i/imageio.md @@ -8,20 +8,17 @@ Imageio is a Python library that provides an easy interface to read and write a *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.10.5`` | | ``foss/2021a`` -``2.13.5`` | | ``foss/2021b`` -``2.22.2`` | | ``foss/2022a`` -``2.3.0`` | ``-Python-3.6.4`` | ``intel/2018a`` -``2.31.1`` | | ``foss/2022b`` -``2.33.1`` | | ``gfbf/2023a`` -``2.34.1`` | | ``gfbf/2023b`` -``2.5.0`` | | ``foss/2019a`` -``2.9.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``2.9.0`` | | ``foss/2020b`` -``2.9.0`` | | ``fosscuda/2020b`` -``2.9.0`` | ``-Python-3.7.4`` | ``intel/2019b`` +version | toolchain +--------|---------- +``2.10.5`` | ``foss/2021a`` +``2.13.5`` | ``foss/2021b`` +``2.22.2`` | ``foss/2022a`` +``2.31.1`` | ``foss/2022b`` +``2.33.1`` | ``gfbf/2023a`` +``2.34.1`` | ``gfbf/2023b`` +``2.36.1`` | ``gfbf/2024a`` +``2.9.0`` | ``foss/2020b`` +``2.9.0`` | ``fosscuda/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/imake.md b/docs/version-specific/supported-software/i/imake.md index eadd07bd13..695493e576 100644 --- a/docs/version-specific/supported-software/i/imake.md +++ b/docs/version-specific/supported-software/i/imake.md @@ -4,13 +4,12 @@ search: --- # imake -imake is a Makefile-generator that is intended to make it easier to develop software portably for multiple systems. +imake is a Makefile-generator that is intended to make it easier to develop software portably for multiple systems. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.0.7`` | ``intel/2016a`` ``1.0.8`` | ``GCCcore/10.2.0`` ``1.0.8`` | ``GCCcore/10.3.0`` ``1.0.8`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/i/imbalanced-learn.md b/docs/version-specific/supported-software/i/imbalanced-learn.md index ad78d743ce..e31803c74e 100644 --- a/docs/version-specific/supported-software/i/imbalanced-learn.md +++ b/docs/version-specific/supported-software/i/imbalanced-learn.md @@ -8,16 +8,14 @@ imbalanced-learn is a Python package offering a number of re-sampling techniques *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.1`` | | ``foss/2022a`` -``0.12.3`` | | ``gfbf/2023a`` -``0.2.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.2.1`` | ``-Python-3.5.2`` | ``intel/2016b`` -``0.3.3`` | ``-Python-3.6.4`` | ``foss/2018a`` -``0.4.3`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.7.0`` | | ``foss/2020b`` -``0.9.0`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``0.10.1`` | ``foss/2022a`` +``0.12.3`` | ``gfbf/2022b`` +``0.12.3`` | ``gfbf/2023a`` +``0.12.4`` | ``gfbf/2023b`` +``0.7.0`` | ``foss/2020b`` +``0.9.0`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/imgaug.md b/docs/version-specific/supported-software/i/imgaug.md index f7759303a9..d8db72a0cc 100644 --- a/docs/version-specific/supported-software/i/imgaug.md +++ b/docs/version-specific/supported-software/i/imgaug.md @@ -10,8 +10,6 @@ This python library helps you with augmenting images for your machine learning p version | versionsuffix | toolchain --------|---------------|---------- -``0.2.8`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.4.0`` | ``-Python-3.7.4`` | ``foss/2019b`` ``0.4.0`` | ``-CUDA-11.3.1`` | ``foss/2021a`` ``0.4.0`` | | ``foss/2021a`` ``0.4.0`` | ``-CUDA-11.4.1`` | ``foss/2021b`` @@ -19,6 +17,7 @@ version | versionsuffix | toolchain ``0.4.0`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``0.4.0`` | | ``foss/2022a`` ``0.4.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``0.4.1`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/imkl-FFTW.md b/docs/version-specific/supported-software/i/imkl-FFTW.md index db42ce2cb6..0ff22f3ea3 100644 --- a/docs/version-specific/supported-software/i/imkl-FFTW.md +++ b/docs/version-specific/supported-software/i/imkl-FFTW.md @@ -18,9 +18,11 @@ version | toolchain ``2022.2.0`` | ``iimpi/2022.09`` ``2022.2.1`` | ``iimpi/2022.11`` ``2022.2.1`` | ``iimpi/2022b`` +``2022.2.1`` | ``iompi/2022b`` ``2023.0.0`` | ``iimpi/2022.12`` ``2023.1.0`` | ``iimpi/2023.03`` ``2023.1.0`` | ``iimpi/2023a`` +``2023.1.0`` | ``iompi/2023a`` ``2023.2.0`` | ``iimpi/2023.07`` ``2023.2.0`` | ``iimpi/2023b`` ``2024.0.0`` | ``iimpi/2023.11`` diff --git a/docs/version-specific/supported-software/i/imkl.md b/docs/version-specific/supported-software/i/imkl.md index 8adda3c3b5..6f45f5d830 100644 --- a/docs/version-specific/supported-software/i/imkl.md +++ b/docs/version-specific/supported-software/i/imkl.md @@ -6,94 +6,35 @@ search: Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``11.2.3.187`` | | ``gimpi/2.11.5`` -``11.3.0.109`` | | ``iimpi/2016.00-GCC-4.9.3-2.25`` -``11.3.1.150`` | | ``iimpi/2016.01-GCC-4.9.3-2.25`` -``11.3.1.150`` | | ``iimpi/8.1.5-GCC-4.9.3-2.25`` -``11.3.2.181`` | | ``iimpi/2016.02-GCC-4.9.3-2.25`` -``11.3.2.181`` | | ``iimpi/2016.02-GCC-5.3.0-2.26`` -``11.3.2.181`` | | ``pompi/2016.03`` -``11.3.3.210`` | | ``iimpi/2016.03-GCC-4.9.3-2.25`` -``11.3.3.210`` | | ``iimpi/2016.03-GCC-5.3.0-2.26`` -``11.3.3.210`` | | ``iimpi/2016.03-GCC-5.4.0-2.26`` -``11.3.3.210`` | | ``iimpi/2016b`` -``11.3.3.210`` | | ``iimpic/2016.10`` -``11.3.3.210`` | | ``iompi/2016.07`` -``11.3.3.210`` | | ``iompi/2016.09-GCC-4.9.3-2.25`` -``11.3.3.210`` | | ``iompi/2016.09-GCC-5.4.0-2.26`` -``11.3.3.210`` | | ``pompi/2016.04`` -``11.3.3.210`` | | ``pompi/2016.09`` -``2017.0.098`` | | ``iimpi/2017.00-GCC-5.4.0-2.26`` -``2017.1.132`` | | ``gimpi/2017a`` -``2017.1.132`` | | ``iimpi/2017.01-GCC-5.4.0-2.26`` -``2017.1.132`` | | ``iimpi/2017a`` -``2017.1.132`` | | ``iompi/2017.01`` -``2017.1.132`` | | ``iompi/2017a`` -``2017.2.174`` | | ``iimpi/2017.02-GCC-6.3.0-2.27`` -``2017.3.196`` | | ``gompi/2017b`` -``2017.3.196`` | | ``iimpi/2017b`` -``2017.3.196`` | | ``iimpic/2017b`` -``2017.3.196`` | | ``iompi/2017b`` -``2017.4.239`` | | ``iimpi/2017.09`` -``2018.0.128`` | | ``iimpi/2018.00`` -``2018.1.163`` | ``-serial`` | ``iccifort/2018.1.163-GCC-6.4.0-2.28`` -``2018.1.163`` | | ``iimpi/2018.01`` -``2018.1.163`` | | ``iimpi/2018a`` -``2018.1.163`` | | ``iompi/2018a`` -``2018.2.199`` | | ``iimpi/2018.02`` -``2018.2.199`` | | ``iompi/2018.02`` -``2018.3.222`` | | ``gimpi/2018b`` -``2018.3.222`` | | ``gompi/2018b`` -``2018.3.222`` | | ``iimpi/2018b`` -``2018.3.222`` | | ``iompi/2018b`` -``2018.4.274`` | | ``iimpi/2018.04`` -``2019.0.117`` | | ``iimpi/2019.00`` -``2019.1.144`` | | ``gompi/2019a`` -``2019.1.144`` | | ``iimpi/2019.01`` -``2019.1.144`` | | ``iimpi/2019a`` -``2019.1.144`` | | ``iimpic/2019a`` -``2019.1.144`` | | ``iompi/2019.01`` -``2019.2.187`` | | ``iimpi/2019.02`` -``2019.3.199`` | | ``iimpi/2019.03`` -``2019.5.281`` | | ``gompi/2019b`` -``2019.5.281`` | | ``gompic/2019b`` -``2019.5.281`` | | ``iimpi/2019b`` -``2019.5.281`` | | ``iimpic/2019b`` -``2019.5.281`` | | ``iompi/2019b`` -``2020.0.166`` | | ``iimpi/2020.00`` -``2020.1.217`` | | ``gompi/2020a`` -``2020.1.217`` | | ``iimpi/2020.06-impi-18.5`` -``2020.1.217`` | | ``iimpi/2020a`` -``2020.1.217`` | | ``iimpic/2020a`` -``2020.1.217`` | | ``iompi/2020a`` -``2020.4.304`` | | ``NVHPC/21.2`` -``2020.4.304`` | | ``gompi/2020b`` -``2020.4.304`` | | ``gompic/2020b`` -``2020.4.304`` | | ``iimpi/2020b`` -``2020.4.304`` | | ``iimpic/2020b`` -``2020.4.304`` | | ``iompi/2020b`` -``2021.1.1`` | | ``iimpi/2020.12`` -``2021.2.0`` | | ``gompi/2021a`` -``2021.2.0`` | | ``iimpi/2021a`` -``2021.2.0`` | | ``iompi/2021a`` -``2021.3.0`` | | ``gompi/2021a`` -``2021.4.0`` | | ``iompi/2021b`` -``2021.4.0`` | | ``system`` -``2022.0.1`` | | ``system`` -``2022.1.0`` | | ``gompi/2022a`` -``2022.1.0`` | | ``system`` -``2022.2.0`` | | ``system`` -``2022.2.1`` | | ``system`` -``2023.0.0`` | | ``system`` -``2023.1.0`` | | ``gompi/2023a`` -``2023.1.0`` | | ``system`` -``2023.2.0`` | | ``system`` -``2024.0.0`` | | ``system`` -``2024.2.0`` | | ``system`` +version | toolchain +--------|---------- +``2020.4.304`` | ``NVHPC/21.2`` +``2020.4.304`` | ``gompi/2020b`` +``2020.4.304`` | ``gompic/2020b`` +``2020.4.304`` | ``iimpi/2020b`` +``2020.4.304`` | ``iimpic/2020b`` +``2020.4.304`` | ``iompi/2020b`` +``2021.1.1`` | ``iimpi/2020.12`` +``2021.2.0`` | ``gompi/2021a`` +``2021.2.0`` | ``iimpi/2021a`` +``2021.2.0`` | ``iompi/2021a`` +``2021.3.0`` | ``gompi/2021a`` +``2021.4.0`` | ``iompi/2021b`` +``2021.4.0`` | ``system`` +``2022.0.1`` | ``system`` +``2022.1.0`` | ``gompi/2022a`` +``2022.1.0`` | ``system`` +``2022.2.0`` | ``system`` +``2022.2.1`` | ``system`` +``2023.0.0`` | ``system`` +``2023.1.0`` | ``gompi/2023a`` +``2023.1.0`` | ``system`` +``2023.2.0`` | ``gompi/2023b`` +``2023.2.0`` | ``system`` +``2024.0.0`` | ``system`` +``2024.2.0`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/immunedeconv.md b/docs/version-specific/supported-software/i/immunedeconv.md deleted file mode 100644 index 1e9654adff..0000000000 --- a/docs/version-specific/supported-software/i/immunedeconv.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# immunedeconv - -immunedeconv is an R package for unified access to computational methods for estimating immune cell fractions from bulk RNA sequencing data. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0.2`` | ``-R-4.0.0`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/impi.md b/docs/version-specific/supported-software/i/impi.md index 45aa9f44f3..bb7f598286 100644 --- a/docs/version-specific/supported-software/i/impi.md +++ b/docs/version-specific/supported-software/i/impi.md @@ -4,78 +4,28 @@ search: --- # impi -The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for Linux OS implements the Message Passing Interface, version 3.1 (MPI-3) specification. +Intel MPI Library, compatible with MPICH ABI *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2017.0.098`` | | ``iccifort/2017.0.098-GCC-5.4.0-2.26`` -``2017.1.132`` | | ``GCC/5.4.0-2.26`` -``2017.1.132`` | | ``iccifort/2017.1.132-GCC-5.4.0-2.26`` -``2017.1.132`` | | ``iccifort/2017.1.132-GCC-6.3.0-2.27`` -``2017.2.174`` | | ``iccifort/2017.2.174-GCC-6.3.0-2.27`` -``2017.3.196`` | | ``GCC/6.4.0-2.28`` -``2017.3.196`` | | ``gcccuda/2017b`` -``2017.3.196`` | | ``iccifort/2017.4.196-GCC-6.4.0-2.28`` -``2017.3.196`` | | ``iccifortcuda/2017.4.196-GCC-6.4.0-2.28`` -``2017.4.239`` | | ``iccifort/2017.5.239-GCC-6.4.0-2.28`` -``2018.0.128`` | | ``iccifort/2018.0.128-GCC-6.4.0-2.28`` -``2018.1.163`` | | ``GCC/6.4.0-2.28`` -``2018.1.163`` | | ``iccifort/2018.1.163-GCC-6.4.0-2.28`` -``2018.2.199`` | | ``iccifort/2018.2.199-GCC-6.4.0-2.28`` -``2018.3.222`` | | ``GCC/7.3.0-2.30`` -``2018.3.222`` | | ``iccifort/2018.3.222-GCC-7.3.0-2.30`` -``2018.4.274`` | | ``iccifort/2018.5.274-GCC-7.3.0-2.30`` -``2018.4.274`` | | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``2018.4.274`` | | ``iccifortcuda/2019a`` -``2018.5.288`` | | ``iccifort/2019.5.281`` -``2018.5.288`` | | ``iccifort/2020.1.217`` -``2018.5.288`` | | ``iccifortcuda/2019b`` -``2019.0.117`` | | ``iccifort/2019.0.117-GCC-8.2.0-2.31.1`` -``2019.1.144`` | | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``2019.12.320`` | | ``iccifort/2020.4.304`` -``2019.2.187`` | | ``iccifort/2019.2.187-GCC-8.2.0-2.31.1`` -``2019.3.199`` | | ``iccifort/2019.3.199-GCC-8.3.0-2.32`` -``2019.6.166`` | | ``iccifort/2020.0.166-GCC-9.2.0`` -``2019.7.217`` | | ``iccifort/2020.1.217`` -``2019.7.217`` | | ``iccifortcuda/2020a`` -``2019.9.304`` | | ``iccifort/2020.4.304`` -``2019.9.304`` | | ``iccifortcuda/2020b`` -``2021.1.1`` | | ``intel-compilers/2021.1.2`` -``2021.10.0`` | | ``intel-compilers/2023.2.1`` -``2021.11.0`` | | ``intel-compilers/2024.0.0`` -``2021.13.0`` | | ``intel-compilers/2024.2.0`` -``2021.2.0`` | | ``intel-compilers/2021.2.0`` -``2021.3.0`` | | ``intel-compilers/2021.3.0`` -``2021.4.0`` | | ``intel-compilers/2021.4.0`` -``2021.5.0`` | | ``intel-compilers/2022.0.1`` -``2021.6.0`` | | ``intel-compilers/2022.1.0`` -``2021.7.0`` | | ``intel-compilers/2022.2.0`` -``2021.7.1`` | | ``intel-compilers/2022.2.1`` -``2021.8.0`` | | ``intel-compilers/2023.0.0`` -``2021.9.0`` | | ``intel-compilers/2023.1.0`` -``3.2.2.006`` | | ``system`` -``4.0.0.028`` | ``-32bit`` | ``system`` -``4.0.0.028`` | | ``system`` -``4.0.2.003`` | | ``system`` -``4.1.0.027`` | | ``system`` -``4.1.0.030`` | | ``system`` -``4.1.1.036`` | | ``system`` -``4.1.2.040`` | | ``system`` -``4.1.3.045`` | | ``system`` -``4.1.3.049`` | | ``GCC/4.8.3`` -``4.1.3.049`` | | ``system`` -``5.0.3.048`` | | ``GCC/4.9.3`` -``5.1.1.109`` | | ``iccifort/2016.0.109-GCC-4.9.3-2.25`` -``5.1.2.150`` | | ``iccifort/2016.1.150-GCC-4.9.3-2.25`` -``5.1.3.181`` | | ``iccifort/2016.2.181-GCC-4.9.3-2.25`` -``5.1.3.181`` | | ``iccifort/2016.2.181-GCC-5.3.0-2.26`` -``5.1.3.181`` | | ``iccifort/2016.3.210-GCC-4.9.3-2.25`` -``5.1.3.181`` | | ``iccifort/2016.3.210-GCC-5.3.0-2.26`` -``5.1.3.181`` | | ``iccifort/2016.3.210-GCC-5.4.0-2.26`` -``5.1.3.181`` | | ``iccifortcuda/2016.10`` -``system`` | | ``iccifort/system-GCC-system-2.29`` +version | toolchain +--------|---------- +``2019.12.320`` | ``iccifort/2020.4.304`` +``2019.9.304`` | ``iccifort/2020.4.304`` +``2019.9.304`` | ``iccifortcuda/2020b`` +``2021.1.1`` | ``intel-compilers/2021.1.2`` +``2021.10.0`` | ``intel-compilers/2023.2.1`` +``2021.11.0`` | ``intel-compilers/2024.0.0`` +``2021.13.0`` | ``intel-compilers/2024.2.0`` +``2021.2.0`` | ``intel-compilers/2021.2.0`` +``2021.3.0`` | ``intel-compilers/2021.3.0`` +``2021.4.0`` | ``intel-compilers/2021.4.0`` +``2021.5.0`` | ``intel-compilers/2022.0.1`` +``2021.6.0`` | ``intel-compilers/2022.1.0`` +``2021.7.0`` | ``intel-compilers/2022.2.0`` +``2021.7.1`` | ``intel-compilers/2022.2.1`` +``2021.8.0`` | ``intel-compilers/2023.0.0`` +``2021.9.0`` | ``intel-compilers/2023.1.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/index.md b/docs/version-specific/supported-software/i/index.md index 71f810dbc5..8c76cfbbb8 100644 --- a/docs/version-specific/supported-software/i/index.md +++ b/docs/version-specific/supported-software/i/index.md @@ -8,42 +8,28 @@ search: - * [i-cisTarget](i-cisTarget.md) - * [i-PI](i-PI.md) - * [I-TASSER](I-TASSER.md) * [i7z](i7z.md) - * [ICA-AROMA](ICA-AROMA.md) - * [icc](icc.md) * [iccifort](iccifort.md) * [iccifortcuda](iccifortcuda.md) * [iced](iced.md) * [ichorCNA](ichorCNA.md) - * [icmake](icmake.md) * [ICON](ICON.md) - * [iCount](iCount.md) * [ICU](ICU.md) * [IDBA-UD](IDBA-UD.md) * [idemux](idemux.md) * [IDG](IDG.md) - * [ieeg-cli](ieeg-cli.md) * [IEntropy](IEntropy.md) - * [ifort](ifort.md) * [IgBLAST](IgBLAST.md) * [IGMPlot](IGMPlot.md) * [igraph](igraph.md) * [IGV](IGV.md) - * [igv-reports](igv-reports.md) * [igvShiny](igvShiny.md) - * [IGVTools](IGVTools.md) * [iibff](iibff.md) * [iimkl](iimkl.md) * [iimpi](iimpi.md) * [iimpic](iimpic.md) * [IJulia](IJulia.md) - * [ILAMB](ILAMB.md) * [ilastik-napari](ilastik-napari.md) - * [IMa2](IMa2.md) - * [IMa2p](IMa2p.md) * [IMAGE](IMAGE.md) * [imagecodecs](imagecodecs.md) * [imageio](imageio.md) @@ -58,63 +44,45 @@ search: * [imkl-FFTW](imkl-FFTW.md) * [IML](IML.md) * [Imlib2](Imlib2.md) - * [immunedeconv](immunedeconv.md) * [IMOD](IMOD.md) * [impi](impi.md) - * [IMPUTE2](IMPUTE2.md) * [imutils](imutils.md) * [InChI](InChI.md) * [indicators](indicators.md) - * [Inelastica](Inelastica.md) * [inferCNV](inferCNV.md) * [infercnvpy](infercnvpy.md) * [Inferelator](Inferelator.md) * [Infernal](Infernal.md) * [inflection](inflection.md) - * [Infomap](Infomap.md) * [inih](inih.md) * [inline](inline.md) * [InParanoid](InParanoid.md) - * [inputproto](inputproto.md) * [Inspector](Inspector.md) - * [IntaRNA](IntaRNA.md) - * [INTEGRATE](INTEGRATE.md) - * [INTEGRATE-Neo](INTEGRATE-Neo.md) * [intel](intel.md) * [intel-compilers](intel-compilers.md) * [IntelClusterChecker](IntelClusterChecker.md) * [intelcuda](intelcuda.md) * [IntelDAAL](IntelDAAL.md) - * [IntelPython](IntelPython.md) * [InterOp](InterOp.md) * [InterProScan](InterProScan.md) * [InterProScan_data](InterProScan_data.md) * [intervaltree](intervaltree.md) * [intervaltree-python](intervaltree-python.md) * [intltool](intltool.md) - * [io_lib](io_lib.md) - * [ioapi](ioapi.md) * [iodata](iodata.md) * [iomkl](iomkl.md) * [iompi](iompi.md) * [IonQuant](IonQuant.md) * [IOR](IOR.md) - * [IOzone](IOzone.md) * [iperf](iperf.md) - * [IPM](IPM.md) - * [Ipopt](Ipopt.md) - * [ipp](ipp.md) - * [IPy](IPy.md) * [ipympl](ipympl.md) - * [ipyparallel](ipyparallel.md) - * [ipyrad](ipyrad.md) * [IPython](IPython.md) * [IQ-TREE](IQ-TREE.md) * [Iris](Iris.md) * [IRkernel](IRkernel.md) * [irodsfs](irodsfs.md) - * [IronPython](IronPython.md) * [ISA-L](ISA-L.md) + * [ISCE2](ISCE2.md) * [ISL](ISL.md) * [isoCirc](isoCirc.md) * [IsoformSwitchAnalyzeR](IsoformSwitchAnalyzeR.md) @@ -124,7 +92,6 @@ search: * [ispc](ispc.md) * [itac](itac.md) * [ITK](ITK.md) - * [itpp](itpp.md) * [ITSTool](ITSTool.md) * [ITSx](ITSx.md) * [iVar](iVar.md) diff --git a/docs/version-specific/supported-software/i/inferCNV.md b/docs/version-specific/supported-software/i/inferCNV.md index 9c6ef63ab9..899d4a8bbb 100644 --- a/docs/version-specific/supported-software/i/inferCNV.md +++ b/docs/version-specific/supported-software/i/inferCNV.md @@ -10,13 +10,10 @@ InferCNV is used to explore tumor single cell RNA-Seq data to identify evidence version | versionsuffix | toolchain --------|---------------|---------- -``1.0.4`` | ``-Python-3.7.2-R-3.6.0`` | ``foss/2019a`` ``1.10.1`` | ``-R-4.1.2`` | ``foss/2021b`` ``1.12.0`` | ``-R-4.2.1`` | ``foss/2022a`` ``1.14.2`` | ``-R-4.2.2`` | ``foss/2022b`` -``1.2.1`` | ``-Python-3.7.4`` | ``foss/2019b`` ``1.21.0`` | ``-R-4.3.2`` | ``foss/2023a`` -``1.3.3`` | ``-Python-3.8.2`` | ``foss/2020a`` ``1.3.3`` | | ``foss/2020b`` ``1.3.3`` | | ``foss/2021a`` diff --git a/docs/version-specific/supported-software/i/inflection.md b/docs/version-specific/supported-software/i/inflection.md index 5fef0e817e..a2d25ae5f0 100644 --- a/docs/version-specific/supported-software/i/inflection.md +++ b/docs/version-specific/supported-software/i/inflection.md @@ -4,7 +4,7 @@ search: --- # inflection -inflection is a package that finds the inflection point of a planar curve which is given as a data frame of discrete (xi,yi) points +inflection is a package that finds the inflection point of a planar curve which is given as a data frame of discrete (xi,yi) points *homepage*: diff --git a/docs/version-specific/supported-software/i/inih.md b/docs/version-specific/supported-software/i/inih.md index 017fdd587b..3580204c2a 100644 --- a/docs/version-specific/supported-software/i/inih.md +++ b/docs/version-specific/supported-software/i/inih.md @@ -11,6 +11,7 @@ Direct Rendering Manager runtime library. version | toolchain --------|---------- ``57`` | ``GCCcore/12.3.0`` +``58`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/inputproto.md b/docs/version-specific/supported-software/i/inputproto.md deleted file mode 100644 index bac79f017f..0000000000 --- a/docs/version-specific/supported-software/i/inputproto.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# inputproto - -X.org InputProto protocol headers. - -*homepage*: - -version | toolchain ---------|---------- -``2.3.1`` | ``foss/2016a`` -``2.3.1`` | ``gimkl/2.11.5`` -``2.3.1`` | ``intel/2016a`` -``2.3.2`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/intel-compilers.md b/docs/version-specific/supported-software/i/intel-compilers.md index 2b0b88c24a..2e9d02b0e5 100644 --- a/docs/version-specific/supported-software/i/intel-compilers.md +++ b/docs/version-specific/supported-software/i/intel-compilers.md @@ -24,6 +24,7 @@ version | toolchain ``2023.2.1`` | ``system`` ``2024.0.0`` | ``system`` ``2024.2.0`` | ``system`` +``2025.0.0`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/intel.md b/docs/version-specific/supported-software/i/intel.md index 040dbd558d..665747a41f 100644 --- a/docs/version-specific/supported-software/i/intel.md +++ b/docs/version-specific/supported-software/i/intel.md @@ -4,59 +4,29 @@ search: --- # intel -Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL. +Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL). *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2016.00`` | | ``system`` -``2016.01`` | | ``system`` -``2016.02`` | ``-GCC-4.9`` | ``system`` -``2016.02`` | ``-GCC-5.3`` | ``system`` -``2016.03`` | ``-GCC-4.9`` | ``system`` -``2016.03`` | ``-GCC-5.3`` | ``system`` -``2016.03`` | ``-GCC-5.4`` | ``system`` -``2016a`` | | ``system`` -``2016b`` | | ``system`` -``2017.00`` | | ``system`` -``2017.01`` | | ``system`` -``2017.02`` | | ``system`` -``2017.09`` | | ``system`` -``2017a`` | | ``system`` -``2017b`` | | ``system`` -``2018.00`` | | ``system`` -``2018.01`` | | ``system`` -``2018.02`` | | ``system`` -``2018.04`` | | ``system`` -``2018a`` | | ``system`` -``2018b`` | | ``system`` -``2019.00`` | | ``system`` -``2019.01`` | | ``system`` -``2019.02`` | | ``system`` -``2019.03`` | | ``system`` -``2019a`` | | ``system`` -``2019b`` | | ``system`` -``2020.00`` | | ``system`` -``2020.06-impi-18.5`` | | ``system`` -``2020.12`` | | ``system`` -``2020a`` | | ``system`` -``2020b`` | | ``system`` -``2021a`` | | ``system`` -``2021b`` | | ``system`` -``2022.00`` | | ``system`` -``2022.05`` | | ``system`` -``2022.09`` | | ``system`` -``2022.11`` | | ``system`` -``2022.12`` | | ``system`` -``2022a`` | | ``system`` -``2022b`` | | ``system`` -``2023.03`` | | ``system`` -``2023.07`` | | ``system`` -``2023.11`` | | ``system`` -``2023a`` | | ``system`` -``2023b`` | | ``system`` -``2024a`` | | ``system`` +version | toolchain +--------|---------- +``2020.12`` | ``system`` +``2020b`` | ``system`` +``2021a`` | ``system`` +``2021b`` | ``system`` +``2022.00`` | ``system`` +``2022.05`` | ``system`` +``2022.09`` | ``system`` +``2022.11`` | ``system`` +``2022.12`` | ``system`` +``2022a`` | ``system`` +``2022b`` | ``system`` +``2023.03`` | ``system`` +``2023.07`` | ``system`` +``2023.11`` | ``system`` +``2023a`` | ``system`` +``2023b`` | ``system`` +``2024a`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/intelcuda.md b/docs/version-specific/supported-software/i/intelcuda.md index 38e7f7edf1..10deed13d8 100644 --- a/docs/version-specific/supported-software/i/intelcuda.md +++ b/docs/version-specific/supported-software/i/intelcuda.md @@ -10,11 +10,6 @@ Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compiler version | toolchain --------|---------- -``2016.10`` | ``system`` -``2017b`` | ``system`` -``2019a`` | ``system`` -``2019b`` | ``system`` -``2020a`` | ``system`` ``2020b`` | ``system`` diff --git a/docs/version-specific/supported-software/i/intervaltree-python.md b/docs/version-specific/supported-software/i/intervaltree-python.md index 0356992361..fe27eff0ca 100644 --- a/docs/version-specific/supported-software/i/intervaltree-python.md +++ b/docs/version-specific/supported-software/i/intervaltree-python.md @@ -4,18 +4,17 @@ search: --- # intervaltree-python -A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment +A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0.2`` | ``-Python-3.6.6`` | ``foss/2018b`` -``3.1.0`` | | ``GCCcore/10.3.0`` -``3.1.0`` | | ``GCCcore/11.2.0`` -``3.1.0`` | | ``GCCcore/11.3.0`` -``3.1.0`` | | ``GCCcore/12.2.0`` -``3.1.0`` | | ``GCCcore/12.3.0`` +version | toolchain +--------|---------- +``3.1.0`` | ``GCCcore/10.3.0`` +``3.1.0`` | ``GCCcore/11.2.0`` +``3.1.0`` | ``GCCcore/11.3.0`` +``3.1.0`` | ``GCCcore/12.2.0`` +``3.1.0`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/intervaltree.md b/docs/version-specific/supported-software/i/intervaltree.md index 5f1110754e..5d023b50bb 100644 --- a/docs/version-specific/supported-software/i/intervaltree.md +++ b/docs/version-specific/supported-software/i/intervaltree.md @@ -16,7 +16,6 @@ version | toolchain ``0.1`` | ``GCCcore/11.3.0`` ``0.1`` | ``GCCcore/12.2.0`` ``0.1`` | ``GCCcore/12.3.0`` -``0.1`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/intltool.md b/docs/version-specific/supported-software/i/intltool.md index d67d2613a8..e979bf6a54 100644 --- a/docs/version-specific/supported-software/i/intltool.md +++ b/docs/version-specific/supported-software/i/intltool.md @@ -8,32 +8,16 @@ intltool is a set of tools to centralize translation of many different file for *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.51.0`` | | ``GCCcore/10.2.0`` -``0.51.0`` | | ``GCCcore/10.3.0`` -``0.51.0`` | | ``GCCcore/11.2.0`` -``0.51.0`` | | ``GCCcore/11.3.0`` -``0.51.0`` | | ``GCCcore/12.2.0`` -``0.51.0`` | | ``GCCcore/12.3.0`` -``0.51.0`` | | ``GCCcore/13.2.0`` -``0.51.0`` | | ``GCCcore/13.3.0`` -``0.51.0`` | ``-Perl-5.24.0`` | ``GCCcore/4.9.3`` -``0.51.0`` | ``-Perl-5.24.0`` | ``GCCcore/5.4.0`` -``0.51.0`` | ``-Perl-5.24.1`` | ``GCCcore/6.3.0`` -``0.51.0`` | ``-Perl-5.26.0`` | ``GCCcore/6.4.0`` -``0.51.0`` | ``-Perl-5.26.1`` | ``GCCcore/6.4.0`` -``0.51.0`` | ``-Perl-5.28.0`` | ``GCCcore/7.3.0`` -``0.51.0`` | | ``GCCcore/8.2.0`` -``0.51.0`` | | ``GCCcore/8.3.0`` -``0.51.0`` | | ``GCCcore/9.3.0`` -``0.51.0`` | ``-Perl-5.22.1`` | ``foss/2016a`` -``0.51.0`` | ``-Perl-5.24.0`` | ``foss/2016b`` -``0.51.0`` | ``-Perl-5.24.0`` | ``gimkl/2017a`` -``0.51.0`` | ``-Perl-5.20.3`` | ``intel/2016a`` -``0.51.0`` | ``-Perl-5.22.1`` | ``intel/2016a`` -``0.51.0`` | ``-Perl-5.24.0`` | ``intel/2016b`` -``0.51.0`` | ``-Perl-5.24.1`` | ``intel/2017a`` +version | toolchain +--------|---------- +``0.51.0`` | ``GCCcore/10.2.0`` +``0.51.0`` | ``GCCcore/10.3.0`` +``0.51.0`` | ``GCCcore/11.2.0`` +``0.51.0`` | ``GCCcore/11.3.0`` +``0.51.0`` | ``GCCcore/12.2.0`` +``0.51.0`` | ``GCCcore/12.3.0`` +``0.51.0`` | ``GCCcore/13.2.0`` +``0.51.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/io_lib.md b/docs/version-specific/supported-software/i/io_lib.md deleted file mode 100644 index dbd9177a32..0000000000 --- a/docs/version-specific/supported-software/i/io_lib.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# io_lib - -Io_lib is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. The programmer simply calls the (eg) read_reading to create a "Read" C structure with the data loaded into memory. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. - -*homepage*: - -version | toolchain ---------|---------- -``1.14.8`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/ioapi.md b/docs/version-specific/supported-software/i/ioapi.md deleted file mode 100644 index 08ff9696fb..0000000000 --- a/docs/version-specific/supported-software/i/ioapi.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ioapi - -The Models-3/EDSS Input/Output Applications Programming Interface (I/O API) provides the environmental model developer with an easy-to-learn, easy-to-use programming library for data storage and access, available from both Fortran and C. The same routines can be used for both file storage (using netCDF files) and model coupling (using PVM mailboxes). It is the standard data access library for both the NCSC/CMAS's EDSS project and EPA's Models-3, CMAQ, and SMOKE, as well as various other atmospheric and hydrological modeling systems. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.2-2020111`` | ``-nocpl`` | ``gompi/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/iodata.md b/docs/version-specific/supported-software/i/iodata.md index 302969877b..a1c15e0e3f 100644 --- a/docs/version-specific/supported-software/i/iodata.md +++ b/docs/version-specific/supported-software/i/iodata.md @@ -11,6 +11,7 @@ Python library for reading, writing, and converting computational chemistry file version | toolchain --------|---------- ``1.0.0a2`` | ``intel/2022a`` +``1.0.0a5`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/iomkl.md b/docs/version-specific/supported-software/i/iomkl.md index 9c1a95da9b..559a79f911 100644 --- a/docs/version-specific/supported-software/i/iomkl.md +++ b/docs/version-specific/supported-software/i/iomkl.md @@ -6,25 +6,15 @@ search: Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2016.07`` | ``system`` -``2016.09-GCC-4.9.3-2.25`` | ``system`` -``2016.09-GCC-5.4.0-2.26`` | ``system`` -``2017.01`` | ``system`` -``2017a`` | ``system`` -``2017b`` | ``system`` -``2018.02`` | ``system`` -``2018a`` | ``system`` -``2018b`` | ``system`` -``2019.01`` | ``system`` -``2019b`` | ``system`` -``2020a`` | ``system`` ``2020b`` | ``system`` ``2021a`` | ``system`` ``2021b`` | ``system`` +``2022b`` | ``system`` +``2023a`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/iompi.md b/docs/version-specific/supported-software/i/iompi.md index d2a22b1650..4662e86d92 100644 --- a/docs/version-specific/supported-software/i/iompi.md +++ b/docs/version-specific/supported-software/i/iompi.md @@ -4,27 +4,17 @@ search: --- # iompi -Toolchain with Intel C, C++ and Fortran compilers, alongside OpenMPI. +Intel C/C++ and Fortran compilers, alongside Open MPI. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2016.07`` | ``system`` -``2016.09-GCC-4.9.3-2.25`` | ``system`` -``2016.09-GCC-5.4.0-2.26`` | ``system`` -``2017.01`` | ``system`` -``2017a`` | ``system`` -``2017b`` | ``system`` -``2018.02`` | ``system`` -``2018a`` | ``system`` -``2018b`` | ``system`` -``2019.01`` | ``system`` -``2019b`` | ``system`` -``2020a`` | ``system`` ``2020b`` | ``system`` ``2021a`` | ``system`` ``2021b`` | ``system`` +``2022b`` | ``system`` +``2023a`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/ipp.md b/docs/version-specific/supported-software/i/ipp.md deleted file mode 100644 index f15a7bdf36..0000000000 --- a/docs/version-specific/supported-software/i/ipp.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ipp - -Intel Integrated Performance Primitives (Intel IPP) is an extensive library of multicore-ready, highly optimized software functions for multimedia, data processing, and communications applications. Intel IPP offers thousands of optimized functions covering frequently used fundamental algorithms. - -*homepage*: - -version | toolchain ---------|---------- -``2017.1.132`` | ``system`` -``7.0.5.233`` | ``system`` -``8.1.0.144`` | ``system`` -``9.0.1.150`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/ipyparallel.md b/docs/version-specific/supported-software/i/ipyparallel.md deleted file mode 100644 index 2d90e56dc3..0000000000 --- a/docs/version-specific/supported-software/i/ipyparallel.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ipyparallel - -ipyparallel is a Python package and collection of CLI scripts for controlling clusters for Jupyter - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``6.2.2`` | ``-Python-3.6.4`` | ``foss/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/ipyrad.md b/docs/version-specific/supported-software/i/ipyrad.md deleted file mode 100644 index 9e5f6dad8d..0000000000 --- a/docs/version-specific/supported-software/i/ipyrad.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ipyrad - -ipyrad is an interactive toolkit for assembly and analysis of restriction-site associated genomic data sets (e.g., RAD, ddRAD, GBS) for population genetic and phylogenetic studies. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.6.15`` | ``-Python-2.7.13`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/ispc.md b/docs/version-specific/supported-software/i/ispc.md index 6925be1378..e21bc396bc 100644 --- a/docs/version-specific/supported-software/i/ispc.md +++ b/docs/version-specific/supported-software/i/ispc.md @@ -10,10 +10,8 @@ Intel SPMD Program Compilers; An open-source compiler for high-performance SIMD version | toolchain --------|---------- -``1.10.0`` | ``system`` ``1.12.0`` | ``system`` ``1.16.0`` | ``system`` -``1.6.0`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/itac.md b/docs/version-specific/supported-software/i/itac.md index 4ececa7c71..20d9db1bb1 100644 --- a/docs/version-specific/supported-software/i/itac.md +++ b/docs/version-specific/supported-software/i/itac.md @@ -10,18 +10,11 @@ The Intel Trace Collector is a low-overhead tracing library that performs event version | toolchain --------|---------- -``2017.1.024`` | ``system`` -``2018.1.017`` | ``system`` -``2018.3.022`` | ``system`` -``2019.2.026`` | ``system`` ``2019.4.036`` | ``system`` ``2021.10.0`` | ``system`` ``2021.2.0`` | ``system`` ``2021.5.0`` | ``system`` ``2021.6.0`` | ``system`` -``8.0.0.011`` | ``system`` -``8.1.4.045`` | ``system`` -``9.0.3.051`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/itpp.md b/docs/version-specific/supported-software/i/itpp.md deleted file mode 100644 index 94c73966d1..0000000000 --- a/docs/version-specific/supported-software/i/itpp.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# itpp - -IT++ is a C++ library of mathematical, signal processing and communication classes and functions. Its main use is in simulation of communication systems and for performing research in the area of communications. - -*homepage*: - -version | toolchain ---------|---------- -``4.3.1`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/index.md b/docs/version-specific/supported-software/index.md index c8d57b9d57..1fff68b216 100644 --- a/docs/version-specific/supported-software/index.md +++ b/docs/version-specific/supported-software/index.md @@ -6,11 +6,9 @@ search: *(quick links: [0](./0/index.md) - [a](./a/index.md) - [b](./b/index.md) - [c](./c/index.md) - [d](./d/index.md) - [e](./e/index.md) - [f](./f/index.md) - [g](./g/index.md) - [h](./h/index.md) - [i](./i/index.md) - [j](./j/index.md) - [k](./k/index.md) - [l](./l/index.md) - [m](./m/index.md) - [n](./n/index.md) - [o](./o/index.md) - [p](./p/index.md) - [q](./q/index.md) - [r](./r/index.md) - [s](./s/index.md) - [t](./t/index.md) - [u](./u/index.md) - [v](./v/index.md) - [w](./w/index.md) - [x](./x/index.md) - [y](./y/index.md) - [z](./z/index.md))* -EasyBuild supports 3670 different software packages (incl. toolchains, bundles): +EasyBuild supports 2835 different software packages (incl. toolchains, bundles): * [0](0/index.md) - * [3d-dna](0/3d-dna.md) - * [3to2](0/3to2.md) * [4ti2](0/4ti2.md) * [a](a/index.md) * [ABAQUS](a/ABAQUS.md) @@ -24,14 +22,9 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [accelerate](a/accelerate.md) * [ack](a/ack.md) * [ACTC](a/ACTC.md) - * [ada](a/ada.md) * [AdapterRemoval](a/AdapterRemoval.md) - * [ADDA](a/ADDA.md) * [ADF](a/ADF.md) - * [ADIOS](a/ADIOS.md) * [adjustText](a/adjustText.md) - * [ADMIXTURE](a/ADMIXTURE.md) - * [ADOL-C](a/ADOL-C.md) * [Advisor](a/Advisor.md) * [AEDT](a/AEDT.md) * [affinity](a/affinity.md) @@ -39,63 +32,40 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [AFNI](a/AFNI.md) * [AGAT](a/AGAT.md) * [AGeNT](a/AGeNT.md) - * [AGFusion](a/AGFusion.md) * [AICSImageIO](a/AICSImageIO.md) * [AIMAll](a/AIMAll.md) * [aiohttp](a/aiohttp.md) - * [ALADIN](a/ALADIN.md) * [ALAMODE](a/ALAMODE.md) - * [Albacore](a/Albacore.md) * [Albumentations](a/Albumentations.md) * [alevin-fry](a/alevin-fry.md) - * [ALFA](a/ALFA.md) * [Alfred](a/Alfred.md) * [ALL](a/ALL.md) * [alleleCount](a/alleleCount.md) * [alleleIntegrator](a/alleleIntegrator.md) - * [Allinea](a/Allinea.md) - * [ALLPATHS-LG](a/ALLPATHS-LG.md) * [almosthere](a/almosthere.md) - * [Alpha](a/Alpha.md) * [AlphaFold](a/AlphaFold.md) * [AlphaPulldown](a/AlphaPulldown.md) - * [ALPS](a/ALPS.md) * [alsa-lib](a/alsa-lib.md) * [AMAPVox](a/AMAPVox.md) - * [Amara](a/Amara.md) - * [amask](a/amask.md) * [Amber](a/Amber.md) - * [AmberMini](a/AmberMini.md) * [AmberTools](a/AmberTools.md) - * [AMD-LibM](a/AMD-LibM.md) - * [AMD-RNG](a/AMD-RNG.md) - * [AMD-SecureRNG](a/AMD-SecureRNG.md) * [AMD-uProf](a/AMD-uProf.md) * [amdahl](a/amdahl.md) * [AMGX](a/AMGX.md) * [AMICA](a/AMICA.md) * [AMOS](a/AMOS.md) * [AMPHORA2](a/AMPHORA2.md) - * [AMPL-MP](a/AMPL-MP.md) - * [amplimap](a/amplimap.md) * [AMPtk](a/AMPtk.md) * [AMRFinderPlus](a/AMRFinderPlus.md) - * [AmrPlusPlus](a/AmrPlusPlus.md) * [AMS](a/AMS.md) - * [Anaconda2](a/Anaconda2.md) * [Anaconda3](a/Anaconda3.md) * [anadama2](a/anadama2.md) - * [aNCI](a/aNCI.md) - * [andi](a/andi.md) - * [ANGEL](a/ANGEL.md) * [angsd](a/angsd.md) * [ANIcalculator](a/ANIcalculator.md) * [anndata](a/anndata.md) - * [Annif](a/Annif.md) * [Annocript](a/Annocript.md) * [annovar](a/annovar.md) * [ANSYS](a/ANSYS.md) - * [ANSYS_CFD](a/ANSYS_CFD.md) * [ant](a/ant.md) * [ANTIC](a/ANTIC.md) * [antiSMASH](a/antiSMASH.md) @@ -104,19 +74,16 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [anvio](a/anvio.md) * [any2fasta](a/any2fasta.md) * [AOCC](a/AOCC.md) + * [AOCL-BLAS](a/AOCL-BLAS.md) * [AOFlagger](a/AOFlagger.md) * [AOMP](a/AOMP.md) - * [APBS](a/APBS.md) * [apex](a/apex.md) * [APOST3D](a/APOST3D.md) * [APR](a/APR.md) * [APR-util](a/APR-util.md) - * [AptaSUITE](a/AptaSUITE.md) * [ARAGORN](a/ARAGORN.md) * [Arb](a/Arb.md) * [Arcade-Learning-Environment](a/Arcade-Learning-Environment.md) - * [arcasHLA](a/arcasHLA.md) - * [ARCH](a/ARCH.md) * [Archive-Zip](a/Archive-Zip.md) * [ArchR](a/ArchR.md) * [archspec](a/archspec.md) @@ -124,111 +91,83 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [ARGoS](a/ARGoS.md) * [argtable](a/argtable.md) * [aria2](a/aria2.md) - * [Arlequin](a/Arlequin.md) * [Armadillo](a/Armadillo.md) * [arosics](a/arosics.md) - * [ARPACK++](a/ARPACK++.md) * [arpack-ng](a/arpack-ng.md) - * [ArrayFire](a/ArrayFire.md) * [Arriba](a/Arriba.md) * [Arrow](a/Arrow.md) * [arrow-R](a/arrow-R.md) - * [ART](a/ART.md) * [Artemis](a/Artemis.md) * [artic-ncov2019](a/artic-ncov2019.md) - * [ARTS](a/ARTS.md) * [ArviZ](a/ArviZ.md) - * [ARWEN](a/ARWEN.md) * [ASAP](a/ASAP.md) * [ASAP3](a/ASAP3.md) * [ASCAT](a/ASCAT.md) * [ASE](a/ASE.md) * [ASF-SearchAPI](a/ASF-SearchAPI.md) - * [ASHS](a/ASHS.md) * [Aspera-CLI](a/Aspera-CLI.md) - * [Aspera-Connect](a/Aspera-Connect.md) * [assembly-stats](a/assembly-stats.md) * [assimp](a/assimp.md) - * [Assimulo](a/Assimulo.md) - * [ASTRID](a/ASTRID.md) * [astro-tulips](a/astro-tulips.md) * [astropy](a/astropy.md) + * [astropy-testing](a/astropy-testing.md) * [at-spi2-atk](a/at-spi2-atk.md) * [at-spi2-core](a/at-spi2-core.md) - * [ATAT](a/ATAT.md) * [ATK](a/ATK.md) - * [ATLAS](a/ATLAS.md) - * [atomate](a/atomate.md) - * [AtomPAW](a/AtomPAW.md) + * [Atomsk](a/Atomsk.md) * [atools](a/atools.md) * [atropos](a/atropos.md) - * [ATSAS](a/ATSAS.md) * [attr](a/attr.md) - * [attrdict](a/attrdict.md) * [attrdict3](a/attrdict3.md) - * [augur](a/augur.md) * [AUGUSTUS](a/AUGUSTUS.md) * [Austin](a/Austin.md) * [AUTO-07p](a/AUTO-07p.md) + * [Auto-WEKA](a/Auto-WEKA.md) * [Autoconf](a/Autoconf.md) * [Autoconf-archive](a/Autoconf-archive.md) * [AutoDock](a/AutoDock.md) * [AutoDock-GPU](a/AutoDock-GPU.md) * [AutoDock-Vina](a/AutoDock-Vina.md) - * [AutoDockSuite](a/AutoDockSuite.md) * [AutoGeneS](a/AutoGeneS.md) - * [AutoGrid](a/AutoGrid.md) * [Automake](a/Automake.md) - * [AutoMap](a/AutoMap.md) * [autopep8](a/autopep8.md) * [Autotools](a/Autotools.md) * [Avogadro2](a/Avogadro2.md) * [avro-cpp](a/avro-cpp.md) * [awscli](a/awscli.md) * [Ax](a/Ax.md) - * [axel](a/axel.md) * [b](b/index.md) * [BA3-SNPS-autotune](b/BA3-SNPS-autotune.md) * [BabelStream](b/BabelStream.md) * [babl](b/babl.md) * [Bader](b/Bader.md) * [BAGEL](b/BAGEL.md) + * [bakta](b/bakta.md) * [BAli-Phy](b/BAli-Phy.md) * [bam-readcount](b/bam-readcount.md) * [Bambi](b/Bambi.md) * [bamFilters](b/bamFilters.md) * [BAMM](b/BAMM.md) - * [BAMSurgeon](b/BAMSurgeon.md) * [bamtofastq](b/bamtofastq.md) * [BamTools](b/BamTools.md) - * [BamUtil](b/BamUtil.md) * [Bandage](b/Bandage.md) * [barrnap](b/barrnap.md) * [basemap](b/basemap.md) * [bases2fastq](b/bases2fastq.md) - * [Bash](b/Bash.md) * [bashplotlib](b/bashplotlib.md) - * [bat](b/bat.md) * [batchgenerators](b/batchgenerators.md) - * [BatMeth2](b/BatMeth2.md) - * [BayesAss](b/BayesAss.md) * [BayesAss3-SNPs](b/BayesAss3-SNPs.md) - * [BayeScan](b/BayeScan.md) - * [BayeScEnv](b/BayeScEnv.md) * [bayesian-optimization](b/bayesian-optimization.md) * [BayesOpt](b/BayesOpt.md) * [BayesPrism](b/BayesPrism.md) * [BayesTraits](b/BayesTraits.md) + * [Baysor](b/Baysor.md) * [Bazel](b/Bazel.md) - * [bbcp](b/bbcp.md) * [bbFTP](b/bbFTP.md) * [BBMap](b/BBMap.md) - * [bc](b/bc.md) - * [BCALM](b/BCALM.md) * [bcbio-gff](b/bcbio-gff.md) * [BCEL](b/BCEL.md) * [BCFtools](b/BCFtools.md) - * [bcgTree](b/bcgTree.md) * [bcl-convert](b/bcl-convert.md) * [bcl2fastq2](b/bcl2fastq2.md) * [bcolz](b/bcolz.md) @@ -241,49 +180,35 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [BEDOPS](b/BEDOPS.md) * [BEDTools](b/BEDTools.md) * [BEEF](b/BEEF.md) - * [behave](b/behave.md) * [bench](b/bench.md) * [BerkeleyGW](b/BerkeleyGW.md) - * [BFAST](b/BFAST.md) - * [BFC](b/BFC.md) * [BGC-Bayesian-genomic-clines](b/BGC-Bayesian-genomic-clines.md) * [BgeeCall](b/BgeeCall.md) * [BgeeDB](b/BgeeDB.md) * [bgen](b/bgen.md) * [BGEN-enkre](b/BGEN-enkre.md) - * [bgen-reader](b/bgen-reader.md) * [BiasAdjustCXX](b/BiasAdjustCXX.md) - * [bibtexparser](b/bibtexparser.md) * [BiG-SCAPE](b/BiG-SCAPE.md) * [BigDFT](b/BigDFT.md) - * [BinSanity](b/BinSanity.md) + * [bin2cell](b/bin2cell.md) + * [BindCraft](b/BindCraft.md) * [binutils](b/binutils.md) * [Bio-DB-HTS](b/Bio-DB-HTS.md) - * [Bio-EUtilities](b/Bio-EUtilities.md) * [Bio-FeatureIO](b/Bio-FeatureIO.md) - * [Bio-SamTools](b/Bio-SamTools.md) * [Bio-SearchIO-hmmer](b/Bio-SearchIO-hmmer.md) * [bioawk](b/bioawk.md) * [biobakery-workflows](b/biobakery-workflows.md) * [biobambam2](b/biobambam2.md) * [biogeme](b/biogeme.md) * [biom-format](b/biom-format.md) - * [biomart-perl](b/biomart-perl.md) * [BioPerl](b/BioPerl.md) - * [BioPP](b/BioPP.md) * [Biopython](b/Biopython.md) - * [BioServices](b/BioServices.md) * [Biotite](b/Biotite.md) - * [BirdNET](b/BirdNET.md) - * [biscuit](b/biscuit.md) * [Bismark](b/Bismark.md) * [Bison](b/Bison.md) - * [bitarray](b/bitarray.md) * [bitsandbytes](b/bitsandbytes.md) * [bitshuffle](b/bitshuffle.md) - * [BLACS](b/BLACS.md) - * [BLASR](b/BLASR.md) - * [blasr_libcpp](b/blasr_libcpp.md) + * [black](b/black.md) * [BLAST](b/BLAST.md) * [BLAST+](b/BLAST+.md) * [BLAT](b/BLAT.md) @@ -291,20 +216,15 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [BLIS](b/BLIS.md) * [bliss](b/bliss.md) * [Blitz++](b/Blitz++.md) - * [BlobTools](b/BlobTools.md) * [Block](b/Block.md) * [Blosc](b/Blosc.md) * [Blosc2](b/Blosc2.md) * [BLT](b/BLT.md) * [bmtagger](b/bmtagger.md) * [BMTK](b/BMTK.md) - * [bnpy](b/bnpy.md) - * [BOINC](b/BOINC.md) * [bokeh](b/bokeh.md) - * [BoltzTraP](b/BoltzTraP.md) * [BoltzTraP2](b/BoltzTraP2.md) * [Bonito](b/Bonito.md) - * [Bonmin](b/Bonmin.md) * [Bonnie++](b/Bonnie++.md) * [Boost](b/Boost.md) * [Boost.MPI](b/Boost.MPI.md) @@ -316,70 +236,47 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [Bottleneck](b/Bottleneck.md) * [Bowtie](b/Bowtie.md) * [Bowtie2](b/Bowtie2.md) - * [Bpipe](b/Bpipe.md) * [bpp](b/bpp.md) * [bpytop](b/bpytop.md) * [Bracken](b/Bracken.md) * [Braindecode](b/Braindecode.md) * [BRAKER](b/BRAKER.md) - * [BreakDancer](b/BreakDancer.md) * [breseq](b/breseq.md) * [BRiAl](b/BRiAl.md) * [Brotli](b/Brotli.md) * [Brotli-python](b/Brotli-python.md) * [Brunsli](b/Brunsli.md) * [bsddb3](b/bsddb3.md) - * [BSMAPz](b/BSMAPz.md) - * [Bsoft](b/Bsoft.md) - * [BSseeker2](b/BSseeker2.md) * [btllib](b/btllib.md) * [BuDDy](b/BuDDy.md) - * [BUFRLIB](b/BUFRLIB.md) * [build](b/build.md) * [buildenv](b/buildenv.md) * [buildingspy](b/buildingspy.md) - * [Bullet](b/Bullet.md) * [BUSCO](b/BUSCO.md) * [BUStools](b/BUStools.md) * [BWA](b/BWA.md) * [bwa-mem2](b/bwa-mem2.md) * [bwa-meth](b/bwa-meth.md) - * [bwakit](b/bwakit.md) * [bwidget](b/bwidget.md) - * [BWISE](b/BWISE.md) * [bx-python](b/bx-python.md) - * [BXH_XCEDE_TOOLS](b/BXH_XCEDE_TOOLS.md) * [byacc](b/byacc.md) - * [byobu](b/byobu.md) * [bzip2](b/bzip2.md) * [c](c/index.md) * [c-ares](c/c-ares.md) - * [C3D](c/C3D.md) - * [cadaver](c/cadaver.md) - * [CaDiCaL](c/CaDiCaL.md) * [CAFE5](c/CAFE5.md) - * [Caffe](c/Caffe.md) * [cairo](c/cairo.md) * [cairomm](c/cairomm.md) - * [Calcam](c/Calcam.md) * [CalculiX-CrunchiX](c/CalculiX-CrunchiX.md) - * [Calendrical](c/Calendrical.md) - * [Calib](c/Calib.md) * [CAMPARI](c/CAMPARI.md) * [Cantera](c/Cantera.md) * [canu](c/canu.md) - * [Canvas](c/Canvas.md) - * [CAP3](c/CAP3.md) * [CapnProto](c/CapnProto.md) * [captum](c/captum.md) - * [Cargo](c/Cargo.md) - * [Carma](c/Carma.md) * [carputils](c/carputils.md) * [Cartopy](c/Cartopy.md) * [CASA](c/CASA.md) * [casacore](c/casacore.md) * [Casanovo](c/Casanovo.md) - * [CaSpER](c/CaSpER.md) * [CASPR](c/CASPR.md) * [Cassiopeia](c/Cassiopeia.md) * [CASTEP](c/CASTEP.md) @@ -391,22 +288,13 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [category_encoders](c/category_encoders.md) * [CatLearn](c/CatLearn.md) * [CatMAP](c/CatMAP.md) - * [causallift](c/causallift.md) - * [causalml](c/causalml.md) - * [CaVEMan](c/CaVEMan.md) - * [CAVIAR](c/CAVIAR.md) * [Cbc](c/Cbc.md) - * [CBLAS](c/CBLAS.md) * [ccache](c/ccache.md) * [CCCL](c/CCCL.md) - * [CCfits](c/CCfits.md) * [CCL](c/CCL.md) * [cclib](c/cclib.md) * [cctbx-base](c/cctbx-base.md) - * [cctools](c/cctools.md) * [CD-HIT](c/CD-HIT.md) - * [CDAT](c/CDAT.md) - * [cdbfasta](c/cdbfasta.md) * [CDBtools](c/CDBtools.md) * [cddlib](c/cddlib.md) * [CDFlib](c/CDFlib.md) @@ -417,9 +305,10 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [cell2location](c/cell2location.md) * [CellBender](c/CellBender.md) * [CellChat](c/CellChat.md) - * [CellMix](c/CellMix.md) + * [Cellformer](c/Cellformer.md) * [CellOracle](c/CellOracle.md) * [Cellpose](c/Cellpose.md) + * [CellProfiler](c/CellProfiler.md) * [CellRanger](c/CellRanger.md) * [CellRanger-ARC](c/CellRanger-ARC.md) * [CellRanger-ATAC](c/CellRanger-ATAC.md) @@ -429,129 +318,110 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [centerline](c/centerline.md) * [Centrifuge](c/Centrifuge.md) * [Cereal](c/Cereal.md) + * [Ceres-Solver](c/Ceres-Solver.md) * [CESM-deps](c/CESM-deps.md) - * [CFDEMcoupling](c/CFDEMcoupling.md) * [cffi](c/cffi.md) * [cfgrib](c/cfgrib.md) * [CFITSIO](c/CFITSIO.md) - * [cftime](c/cftime.md) * [CGAL](c/CGAL.md) - * [cget](c/cget.md) * [Cgl](c/Cgl.md) - * [CGmapTools](c/CGmapTools.md) - * [CGNS](c/CGNS.md) * [CharLS](c/CharLS.md) * [charm-gems](c/charm-gems.md) - * [CHASE](c/CHASE.md) * [Check](c/Check.md) * [CheckM](c/CheckM.md) * [CheckM-Database](c/CheckM-Database.md) * [CheckM2](c/CheckM2.md) - * [Cheetah](c/Cheetah.md) * [Chemaxon-Marvin](c/Chemaxon-Marvin.md) * [chemprop](c/chemprop.md) * [CheMPS2](c/CheMPS2.md) * [CHERAB](c/CHERAB.md) * [chewBBACA](c/chewBBACA.md) - * [chi2comb](c/chi2comb.md) * [Chimera](c/Chimera.md) - * [ChimPipe](c/ChimPipe.md) * [ChIPseeker](c/ChIPseeker.md) * [chopper](c/chopper.md) - * [Chromaprint](c/Chromaprint.md) * [chromVARmotifs](c/chromVARmotifs.md) * [cicero](c/cicero.md) - * [CIF2Cell](c/CIF2Cell.md) * [cimfomfa](c/cimfomfa.md) - * [CIRCexplorer](c/CIRCexplorer.md) + * [CIRCE](c/CIRCE.md) * [CIRCexplorer2](c/CIRCexplorer2.md) * [Circlator](c/Circlator.md) * [Circos](c/Circos.md) * [Circuitscape](c/Circuitscape.md) - * [CIRI](c/CIRI.md) * [CIRI-long](c/CIRI-long.md) * [CIRIquant](c/CIRIquant.md) - * [cisTEM](c/cisTEM.md) - * [CITE-seq-Count](c/CITE-seq-Count.md) + * [cisDIVERSITY](c/cisDIVERSITY.md) * [Clair3](c/Clair3.md) * [Clang](c/Clang.md) * [Clang-AOMP](c/Clang-AOMP.md) * [Clang-Python-bindings](c/Clang-Python-bindings.md) * [CLANS](c/CLANS.md) - * [CLAPACK](c/CLAPACK.md) * [Clarabel.rs](c/Clarabel.rs.md) * [CLEAR](c/CLEAR.md) + * [clearml](c/clearml.md) * [CLEASE](c/CLEASE.md) * [CLHEP](c/CLHEP.md) * [CliMetLab](c/CliMetLab.md) * [CLIP](c/CLIP.md) * [cliquer](c/cliquer.md) - * [CLISP](c/CLISP.md) - * [ClonalFrameML](c/ClonalFrameML.md) - * [CLooG](c/CLooG.md) * [CloudCompare](c/CloudCompare.md) * [Clp](c/Clp.md) * [CLUMPP](c/CLUMPP.md) * [Clustal-Omega](c/Clustal-Omega.md) * [ClustalW2](c/ClustalW2.md) * [Cluster-Buster](c/Cluster-Buster.md) - * [ClusterShell](c/ClusterShell.md) * [CMake](c/CMake.md) * [CMAverse](c/CMAverse.md) + * [cmcrameri](c/cmcrameri.md) * [CmdStanR](c/CmdStanR.md) * [cmocean](c/cmocean.md) * [cmph](c/cmph.md) * [CMSeq](c/CMSeq.md) - * [CNT-ILP](c/CNT-ILP.md) * [CNVkit](c/CNVkit.md) - * [CNVnator](c/CNVnator.md) - * [Co-phylog](c/Co-phylog.md) + * [cnvpytor](c/cnvpytor.md) + * [COAWST-deps](c/COAWST-deps.md) * [COBRApy](c/COBRApy.md) * [CoCoALib](c/CoCoALib.md) * [CodAn](c/CodAn.md) * [code-cli](c/code-cli.md) * [code-server](c/code-server.md) - * [CODEX2](c/CODEX2.md) * [CodingQuarry](c/CodingQuarry.md) * [Cogent](c/Cogent.md) * [Coin](c/Coin.md) * [CoinUtils](c/CoinUtils.md) * [ColabFold](c/ColabFold.md) + * [COLMAP](c/COLMAP.md) * [colorize](c/colorize.md) * [colossalai](c/colossalai.md) + * [columba](c/columba.md) * [COMEBin](c/COMEBin.md) - * [Commet](c/Commet.md) * [CompareM](c/CompareM.md) * [Compass](c/Compass.md) * [Compress-Raw-Zlib](c/Compress-Raw-Zlib.md) * [COMSOL](c/COMSOL.md) - * [Con3F](c/Con3F.md) * [conan](c/conan.md) * [CONCOCT](c/CONCOCT.md) * [Concorde](c/Concorde.md) * [ConcurrentVersionsSystem](c/ConcurrentVersionsSystem.md) - * [configparser](c/configparser.md) * [configurable-http-proxy](c/configurable-http-proxy.md) * [CONN](c/CONN.md) * [connected-components-3d](c/connected-components-3d.md) * [ConnectomeWorkbench](c/ConnectomeWorkbench.md) * [contextily](c/contextily.md) * [Control-FREEC](c/Control-FREEC.md) + * [cookiecutter](c/cookiecutter.md) * [cooler](c/cooler.md) * [CoordgenLibs](c/CoordgenLibs.md) * [Coot](c/Coot.md) * [CopyKAT](c/CopyKAT.md) - * [core-counter](c/core-counter.md) * [Coreutils](c/Coreutils.md) * [corner](c/corner.md) * [CORSIKA](c/CORSIKA.md) * [COSTA](c/COSTA.md) * [CoSymLib](c/CoSymLib.md) * [coverage](c/coverage.md) - * [cowsay](c/cowsay.md) * [coxeter](c/coxeter.md) * [CP2K](c/CP2K.md) - * [CPB](c/CPB.md) + * [cp2k-input-tools](c/cp2k-input-tools.md) * [CPC2](c/CPC2.md) * [cpio](c/cpio.md) * [CPLEX](c/CPLEX.md) @@ -563,46 +433,32 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [cppyy](c/cppyy.md) * [cppzmq](c/cppzmq.md) * [cpu_features](c/cpu_features.md) - * [cram](c/cram.md) * [cramino](c/cramino.md) - * [cramtools](c/cramtools.md) - * [CrayCCE](c/CrayCCE.md) - * [CrayGNU](c/CrayGNU.md) - * [CrayIntel](c/CrayIntel.md) - * [CrayPGI](c/CrayPGI.md) * [crb-blast](c/crb-blast.md) * [CREST](c/CREST.md) - * [CRF++](c/CRF++.md) * [CRISPR-DAV](c/CRISPR-DAV.md) * [CRISPResso2](c/CRISPResso2.md) * [Critic2](c/Critic2.md) * [cromwell](c/cromwell.md) * [crossguid](c/crossguid.md) - * [CrossMap](c/CrossMap.md) - * [CrossTalkZ](c/CrossTalkZ.md) - * [CRPropa](c/CRPropa.md) * [Crumble](c/Crumble.md) * [cryoCARE](c/cryoCARE.md) * [cryoDRGN](c/cryoDRGN.md) * [crypt4gh](c/crypt4gh.md) * [cryptography](c/cryptography.md) - * [CryptoMiniSat](c/CryptoMiniSat.md) - * [CrystFEL](c/CrystFEL.md) * [CSB](c/CSB.md) * [CSBDeep](c/CSBDeep.md) * [CSBLAST](c/CSBLAST.md) - * [cscope](c/cscope.md) * [csvkit](c/csvkit.md) - * [ctags](c/ctags.md) * [ctffind](c/ctffind.md) * [ctffind5](c/ctffind5.md) * [CTPL](c/CTPL.md) - * [Cube](c/Cube.md) + * [CTranslate2](c/CTranslate2.md) * [CubeGUI](c/CubeGUI.md) * [CubeLib](c/CubeLib.md) * [CubeWriter](c/CubeWriter.md) - * [CuCLARK](c/CuCLARK.md) * [CUDA](c/CUDA.md) + * [CUDA-Python](c/CUDA-Python.md) * [CUDA-Samples](c/CUDA-Samples.md) * [CUDAcompat](c/CUDAcompat.md) * [CUDAcore](c/CUDAcore.md) @@ -611,10 +467,10 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [Cufflinks](c/Cufflinks.md) * [CUnit](c/CUnit.md) * [CuPy](c/CuPy.md) + * [cuQuantum](c/cuQuantum.md) * [cURL](c/cURL.md) * [currentNe](c/currentNe.md) * [cuSPARSELt](c/cuSPARSELt.md) - * [custodian](c/custodian.md) * [cutadapt](c/cutadapt.md) * [cuTENSOR](c/cuTENSOR.md) * [cuteSV](c/cuteSV.md) @@ -629,26 +485,20 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [cysignals](c/cysignals.md) * [Cython](c/Cython.md) * [cython-blis](c/cython-blis.md) - * [cytoolz](c/cytoolz.md) + * [cython-cmake](c/cython-cmake.md) * [Cytoscape](c/Cytoscape.md) - * [cytosim](c/cytosim.md) * [cyvcf2](c/cyvcf2.md) * [d](d/index.md) - * [dadi](d/dadi.md) - * [dagitty](d/dagitty.md) * [Dakota](d/Dakota.md) * [DALI](d/DALI.md) * [DaliLite](d/DaliLite.md) * [Dalton](d/Dalton.md) - * [damageproto](d/damageproto.md) - * [dammit](d/dammit.md) - * [DANPOS2](d/DANPOS2.md) * [DAS_Tool](d/DAS_Tool.md) * [dask](d/dask.md) * [dask-labextension](d/dask-labextension.md) + * [Dask-ML](d/Dask-ML.md) * [datalad](d/datalad.md) * [datamash](d/datamash.md) - * [davix](d/davix.md) * [DB](d/DB.md) * [DB_File](d/DB_File.md) * [DBCSR](d/DBCSR.md) @@ -660,36 +510,30 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [dclone](d/dclone.md) * [dcm2niix](d/dcm2niix.md) * [DCMTK](d/DCMTK.md) - * [dd](d/dd.md) * [deal.II](d/deal.II.md) - * [deap](d/deap.md) + * [DECAF-synthetic-data](d/DECAF-synthetic-data.md) * [decona](d/decona.md) - * [deconf](d/deconf.md) - * [DeconICA](d/DeconICA.md) * [deepdiff](d/deepdiff.md) + * [DeepDRR](d/DeepDRR.md) * [deepfold](d/deepfold.md) * [DeepLabCut](d/DeepLabCut.md) * [DeepLoc](d/DeepLoc.md) * [deepmedic](d/deepmedic.md) * [DeepMod2](d/DeepMod2.md) - * [DeepSurv](d/DeepSurv.md) * [deepTools](d/deepTools.md) * [DEICODE](d/DEICODE.md) * [Delft3D](d/Delft3D.md) * [Delly](d/Delly.md) * [DeltaLake](d/DeltaLake.md) - * [DeMixT](d/DeMixT.md) * [Demystify](d/Demystify.md) * [DendroPy](d/DendroPy.md) * [denseweight](d/denseweight.md) * [DensPart](d/DensPart.md) * [Deprecated](d/Deprecated.md) * [desktop-file-utils](d/desktop-file-utils.md) - * [destiny](d/destiny.md) * [Detectron2](d/Detectron2.md) * [DETONATE](d/DETONATE.md) * [devbio-napari](d/devbio-napari.md) - * [Devito](d/Devito.md) * [DFA](d/DFA.md) * [DFT-D3](d/DFT-D3.md) * [DFT-D4](d/DFT-D4.md) @@ -698,59 +542,45 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [dftd4](d/dftd4.md) * [DGL](d/DGL.md) * [DIA-NN](d/DIA-NN.md) - * [DIAL](d/DIAL.md) * [dialog](d/dialog.md) * [DIALOGUE](d/DIALOGUE.md) * [DIAMOND](d/DIAMOND.md) * [Dice](d/Dice.md) * [DiCE-ML](d/DiCE-ML.md) * [dicom2nifti](d/dicom2nifti.md) - * [DicomBrowser](d/DicomBrowser.md) * [dictys](d/dictys.md) * [DiffBind](d/DiffBind.md) - * [Diffutils](d/Diffutils.md) - * [dijitso](d/dijitso.md) * [dill](d/dill.md) * [DIRAC](d/DIRAC.md) - * [distributed](d/distributed.md) * [DistributedStream](d/DistributedStream.md) * [DjVuLibre](d/DjVuLibre.md) * [DL_POLY_4](d/DL_POLY_4.md) - * [DL_POLY_Classic](d/DL_POLY_Classic.md) * [DL_POLY_Classic_GUI](d/DL_POLY_Classic_GUI.md) * [dlb](d/dlb.md) * [dlib](d/dlib.md) * [DLPack](d/DLPack.md) + * [dm-control](d/dm-control.md) * [dm-haiku](d/dm-haiku.md) * [dm-reverb](d/dm-reverb.md) * [dm-tree](d/dm-tree.md) - * [DMCfun](d/DMCfun.md) * [DMLC-Core](d/DMLC-Core.md) * [DMTCP](d/DMTCP.md) - * [DOLFIN](d/DOLFIN.md) * [dominate](d/dominate.md) * [dorado](d/dorado.md) - * [Doris](d/Doris.md) * [DosageConvertor](d/DosageConvertor.md) * [dotNET-Core](d/dotNET-Core.md) - * [dotNET-Core-Runtime](d/dotNET-Core-Runtime.md) - * [dotNET-SDK](d/dotNET-SDK.md) * [double-conversion](d/double-conversion.md) * [DoubletFinder](d/DoubletFinder.md) * [Doxygen](d/Doxygen.md) * [DP3](d/DP3.md) + * [draco](d/draco.md) * [DRAGMAP](d/DRAGMAP.md) - * [Drake](d/Drake.md) * [dRep](d/dRep.md) * [drmaa-python](d/drmaa-python.md) * [DROP](d/DROP.md) - * [dropEst](d/dropEst.md) - * [DSA](d/DSA.md) * [dSFMT](d/dSFMT.md) - * [DSRC](d/DSRC.md) * [Dsuite](d/Dsuite.md) * [dtcmp](d/dtcmp.md) - * [dtcwt](d/dtcwt.md) * [DualSPHysics](d/DualSPHysics.md) * [dub](d/dub.md) * [DUBStepR](d/DUBStepR.md) @@ -764,12 +594,9 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [e](e/index.md) * [E-ANTIC](e/E-ANTIC.md) * [e3nn](e/e3nn.md) - * [ea-utils](e/ea-utils.md) - * [earthengine-api](e/earthengine-api.md) * [easel](e/easel.md) * [EasyBuild](e/EasyBuild.md) * [EasyMocap](e/EasyMocap.md) - * [EasyQC](e/EasyQC.md) * [ebGSEA](e/ebGSEA.md) * [ecBuild](e/ecBuild.md) * [ecCodes](e/ecCodes.md) @@ -777,7 +604,6 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [ecFlow](e/ecFlow.md) * [ECL](e/ECL.md) * [eclib](e/eclib.md) - * [ED2](e/ED2.md) * [EDirect](e/EDirect.md) * [edlib](e/edlib.md) * [EGA-QuickView](e/EGA-QuickView.md) @@ -789,165 +615,115 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [EigenExa](e/EigenExa.md) * [EIGENSOFT](e/EIGENSOFT.md) * [einops](e/einops.md) - * [elastix](e/elastix.md) * [elbencho](e/elbencho.md) * [ELFIO](e/ELFIO.md) * [elfutils](e/elfutils.md) + * [elfx86exts](e/elfx86exts.md) * [Elk](e/Elk.md) * [Elmer](e/Elmer.md) * [ELPA](e/ELPA.md) - * [ELPH](e/ELPH.md) * [elprep](e/elprep.md) * [ELSI](e/ELSI.md) * [ELSI-RCI](e/ELSI-RCI.md) * [Emacs](e/Emacs.md) - * [EMAN2](e/EMAN2.md) * [EMBOSS](e/EMBOSS.md) * [Embree](e/Embree.md) * [emcee](e/emcee.md) * [EMMAX](e/EMMAX.md) * [empanada-dl](e/empanada-dl.md) * [empanada-napari](e/empanada-napari.md) - * [EMU](e/EMU.md) * [enaBrowserTool](e/enaBrowserTool.md) - * [enchant](e/enchant.md) * [enchant-2](e/enchant-2.md) * [EnergyPlus](e/EnergyPlus.md) - * [EnsEMBLCoreAPI](e/EnsEMBLCoreAPI.md) * [ensmallen](e/ensmallen.md) - * [entrypoints](e/entrypoints.md) * [epct](e/epct.md) - * [EPD](e/EPD.md) - * [EPIC](e/EPIC.md) * [epiScanpy](e/epiScanpy.md) * [EpiSCORE](e/EpiSCORE.md) * [eQuilibrator](e/eQuilibrator.md) - * [EricScript](e/EricScript.md) * [ESIpy](e/ESIpy.md) * [ESL-Bundle](e/ESL-Bundle.md) * [ESM-2](e/ESM-2.md) * [ESM3](e/ESM3.md) * [ESMF](e/ESMF.md) * [ESMPy](e/ESMPy.md) - * [ESMValTool](e/ESMValTool.md) * [eSpeak-NG](e/eSpeak-NG.md) * [ESPResSo](e/ESPResSo.md) - * [Essentia](e/Essentia.md) * [ETE](e/ETE.md) - * [ETSF_IO](e/ETSF_IO.md) - * [eudev](e/eudev.md) * [EUKulele](e/EUKulele.md) * [EVcouplings](e/EVcouplings.md) * [Evcxr-REPL](e/Evcxr-REPL.md) * [EveryBeam](e/EveryBeam.md) + * [EVidenceModeler](e/EVidenceModeler.md) * [EvidentialGene](e/EvidentialGene.md) * [evince](e/evince.md) - * [evmix](e/evmix.md) - * [ExaBayes](e/ExaBayes.md) * [ExaML](e/ExaML.md) * [Excel-Writer-XLSX](e/Excel-Writer-XLSX.md) - * [ExifTool](e/ExifTool.md) * [exiv2](e/exiv2.md) * [Exonerate](e/Exonerate.md) * [expat](e/expat.md) - * [expect](e/expect.md) * [expecttest](e/expecttest.md) - * [eXpress](e/eXpress.md) * [ExpressBetaDiversity](e/ExpressBetaDiversity.md) * [Extrae](e/Extrae.md) * [ExtremeLy](e/ExtremeLy.md) * [EZC3D](e/EZC3D.md) * [f](f/index.md) - * [f90cache](f/f90cache.md) * [f90nml](f/f90nml.md) * [f90wrap](f/f90wrap.md) - * [Faber](f/Faber.md) * [FabIO](f/FabIO.md) * [FACE](f/FACE.md) - * [faceswap](f/faceswap.md) + * [face-recognition](f/face-recognition.md) * [Faiss](f/Faiss.md) - * [FALCON](f/FALCON.md) - * [FANN](f/FANN.md) - * [fast5](f/fast5.md) * [FASTA](f/FASTA.md) * [fasta-reader](f/fasta-reader.md) * [fastahack](f/fastahack.md) * [fastai](f/fastai.md) - * [FastaIndex](f/FastaIndex.md) * [FastANI](f/FastANI.md) * [Fastaq](f/Fastaq.md) * [fastfilters](f/fastfilters.md) * [FastFold](f/FastFold.md) * [fastjet](f/fastjet.md) * [fastjet-contrib](f/fastjet-contrib.md) + * [FastK](f/FastK.md) * [FastME](f/FastME.md) * [fastml](f/fastml.md) * [fastp](f/fastp.md) * [fastparquet](f/fastparquet.md) - * [fastPHASE](f/fastPHASE.md) - * [fastq-pair](f/fastq-pair.md) * [fastq-tools](f/fastq-tools.md) * [FastQ_Screen](f/FastQ_Screen.md) * [FastQC](f/FastQC.md) - * [fastqsplitter](f/fastqsplitter.md) * [FastQTL](f/FastQTL.md) - * [fastqz](f/fastqz.md) - * [FastRFS](f/FastRFS.md) - * [fastStructure](f/fastStructure.md) + * [fastText](f/fastText.md) * [FastTree](f/FastTree.md) - * [FastViromeExplorer](f/FastViromeExplorer.md) * [FASTX-Toolkit](f/FASTX-Toolkit.md) - * [fatslim](f/fatslim.md) - * [fbm](f/fbm.md) * [FBPIC](f/FBPIC.md) - * [FCM](f/FCM.md) * [fdict](f/fdict.md) * [FDMNES](f/FDMNES.md) * [FDS](f/FDS.md) - * [fdstools](f/fdstools.md) - * [FDTD_Solutions](f/FDTD_Solutions.md) * [feh](f/feh.md) - * [FEniCS](f/FEniCS.md) * [fermi-lite](f/fermi-lite.md) * [Ferret](f/Ferret.md) * [festival](f/festival.md) - * [fetchMG](f/fetchMG.md) * [FFAVES](f/FFAVES.md) - * [FFC](f/FFC.md) * [FFLAS-FFPACK](f/FFLAS-FFPACK.md) * [FFmpeg](f/FFmpeg.md) - * [ffnet](f/ffnet.md) * [ffnvcodec](f/ffnvcodec.md) * [fftlib](f/fftlib.md) * [FFTW](f/FFTW.md) * [FFTW.MPI](f/FFTW.MPI.md) * [fgbio](f/fgbio.md) - * [FGSL](f/FGSL.md) * [FHI-aims](f/FHI-aims.md) - * [FIAT](f/FIAT.md) * [FIGARO](f/FIGARO.md) - * [FigureGen](f/FigureGen.md) * [Fiji](f/Fiji.md) * [file](f/file.md) * [filevercmp](f/filevercmp.md) * [Filtlong](f/Filtlong.md) - * [find_circ](f/find_circ.md) * [finder](f/finder.md) - * [findhap](f/findhap.md) - * [findutils](f/findutils.md) * [fineRADstructure](f/fineRADstructure.md) - * [fineSTRUCTURE](f/fineSTRUCTURE.md) * [fio](f/fio.md) * [Fiona](f/Fiona.md) - * [Firefox](f/Firefox.md) * [FIRESTARTER](f/FIRESTARTER.md) - * [FireWorks](f/FireWorks.md) * [fish](f/fish.md) - * [FIt-SNE](f/FIt-SNE.md) - * [FIX](f/FIX.md) - * [fixesproto](f/fixesproto.md) * [FLAC](f/FLAC.md) - * [FLAIR](f/FLAIR.md) * [flair-NLP](f/flair-NLP.md) * [FLANN](f/FLANN.md) * [FLASH](f/FLASH.md) @@ -956,29 +732,23 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [flatbuffers](f/flatbuffers.md) * [flatbuffers-python](f/flatbuffers-python.md) * [Flax](f/Flax.md) - * [FLEUR](f/FLEUR.md) * [flex](f/flex.md) - * [Flexbar](f/Flexbar.md) * [FlexiBLAS](f/FlexiBLAS.md) - * [FlexiDot](f/FlexiDot.md) * [Flink](f/Flink.md) * [FLINT](f/FLINT.md) * [flit](f/flit.md) * [flook](f/flook.md) + * [FloPy](f/FloPy.md) * [flowFDA](f/flowFDA.md) * [FLTK](f/FLTK.md) * [FLUENT](f/FLUENT.md) * [Flye](f/Flye.md) - * [FMILibrary](f/FMILibrary.md) * [FMM3D](f/FMM3D.md) * [FMPy](f/FMPy.md) - * [FMRIprep](f/FMRIprep.md) * [FMS](f/FMS.md) * [fmt](f/fmt.md) * [FoBiS](f/FoBiS.md) - * [FoldX](f/FoldX.md) * [fontconfig](f/fontconfig.md) - * [fontsproto](f/fontsproto.md) * [fonttools](f/fonttools.md) * [forbear](f/forbear.md) * [FORD](f/FORD.md) @@ -988,20 +758,13 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [FOX-Toolkit](f/FOX-Toolkit.md) * [fplll](f/fplll.md) * [FPM](f/FPM.md) - * [fpocket](f/fpocket.md) * [fpylll](f/fpylll.md) - * [fqtrim](f/fqtrim.md) - * [fqzcomp](f/fqzcomp.md) * [FragGeneScan](f/FragGeneScan.md) * [FragPipe](f/FragPipe.md) - * [FRANz](f/FRANz.md) * [FreeBarcodes](f/FreeBarcodes.md) * [freebayes](f/freebayes.md) - * [FreeFEM](f/FreeFEM.md) - * [FreeFem++](f/FreeFem++.md) * [freeglut](f/freeglut.md) * [FreeImage](f/FreeImage.md) - * [FreeSASA](f/FreeSASA.md) * [FreeSurfer](f/FreeSurfer.md) * [FreeTDS](f/FreeTDS.md) * [freetype](f/freetype.md) @@ -1009,43 +772,28 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [FreeXL](f/FreeXL.md) * [freud-analysis](f/freud-analysis.md) * [FriBidi](f/FriBidi.md) - * [FRUIT](f/FRUIT.md) - * [FRUIT_processor](f/FRUIT_processor.md) * [FSL](f/FSL.md) - * [FSLeyes](f/FSLeyes.md) * [fsm-lite](f/fsm-lite.md) * [fsom](f/fsom.md) * [FSON](f/FSON.md) * [ftfy](f/ftfy.md) * [FTGL](f/FTGL.md) * [fugue](f/fugue.md) - * [fullrmc](f/fullrmc.md) * [fumi_tools](f/fumi_tools.md) * [funannotate](f/funannotate.md) * [FunGAP](f/FunGAP.md) - * [FUNWAVE-TVD](f/FUNWAVE-TVD.md) * [FUSE](f/FUSE.md) - * [FuSeq](f/FuSeq.md) - * [FusionCatcher](f/FusionCatcher.md) * [futhark](f/futhark.md) * [futile](f/futile.md) - * [future](f/future.md) - * [fxtract](f/fxtract.md) * [g](g/index.md) - * [G-PhoCS](g/G-PhoCS.md) * [g2clib](g/g2clib.md) * [g2lib](g/g2lib.md) - * [g2log](g/g2log.md) - * [Gaia](g/Gaia.md) * [GAMESS-US](g/GAMESS-US.md) * [gap](g/gap.md) - * [GapCloser](g/GapCloser.md) * [GapFiller](g/GapFiller.md) * [gappa](g/gappa.md) * [GAPPadder](g/GAPPadder.md) - * [GARLI](g/GARLI.md) * [garnett](g/garnett.md) - * [GAT](g/GAT.md) * [GATB-Core](g/GATB-Core.md) * [GATE](g/GATE.md) * [GATK](g/GATK.md) @@ -1054,9 +802,7 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [gbasis](g/gbasis.md) * [Gblocks](g/Gblocks.md) * [GBprocesS](g/GBprocesS.md) - * [gbs2ploidy](g/gbs2ploidy.md) * [gc](g/gc.md) - * [GC3Pie](g/GC3Pie.md) * [GCC](g/GCC.md) * [GCCcore](g/GCCcore.md) * [gcccuda](g/gcccuda.md) @@ -1064,44 +810,33 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [GConf](g/GConf.md) * [gcsfs](g/gcsfs.md) * [GCTA](g/GCTA.md) - * [Gctf](g/Gctf.md) * [GD](g/GD.md) * [GDAL](g/GDAL.md) * [GDB](g/GDB.md) - * [gdbgui](g/gdbgui.md) * [gdbm](g/gdbm.md) * [gdc-client](g/gdc-client.md) - * [GDCHART](g/GDCHART.md) * [GDCM](g/GDCM.md) * [GDGraph](g/GDGraph.md) - * [gdist](g/gdist.md) * [Gdk-Pixbuf](g/Gdk-Pixbuf.md) * [GDMA](g/GDMA.md) * [GDRCopy](g/GDRCopy.md) * [Gdspy](g/Gdspy.md) * [Geant4](g/Geant4.md) * [Geant4-data](g/Geant4-data.md) - * [gearshifft](g/gearshifft.md) * [GEGL](g/GEGL.md) * [GEM](g/GEM.md) - * [GEM-library](g/GEM-library.md) * [gemelli](g/gemelli.md) * [GEMMA](g/GEMMA.md) * [gemmi](g/gemmi.md) - * [gencore_variant_detection](g/gencore_variant_detection.md) * [GeneMark-ET](g/GeneMark-ET.md) * [GenerativeModels](g/GenerativeModels.md) * [gengetopt](g/gengetopt.md) * [GenMap](g/GenMap.md) - * [Genome_Profiler](g/Genome_Profiler.md) * [GenomeComb](g/GenomeComb.md) - * [GenomeMapper](g/GenomeMapper.md) * [genomepy](g/genomepy.md) - * [GenomeTester4](g/GenomeTester4.md) * [GenomeThreader](g/GenomeThreader.md) * [GenomeTools](g/GenomeTools.md) * [GenomeWorks](g/GenomeWorks.md) - * [GenotypeHarmonizer](g/GenotypeHarmonizer.md) * [genozip](g/genozip.md) * [gensim](g/gensim.md) * [geocube](g/geocube.md) @@ -1112,7 +847,6 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [GEOS](g/GEOS.md) * [geosphere](g/geosphere.md) * [Gerris](g/Gerris.md) - * [GETORB](g/GETORB.md) * [GetOrganelle](g/GetOrganelle.md) * [gettext](g/gettext.md) * [gexiv2](g/gexiv2.md) @@ -1122,7 +856,6 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [gffread](g/gffread.md) * [gffutils](g/gffutils.md) * [gflags](g/gflags.md) - * [GFOLD](g/GFOLD.md) * [gh](g/gh.md) * [GHC](g/GHC.md) * [Ghostscript](g/Ghostscript.md) @@ -1132,58 +865,40 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [giflib](g/giflib.md) * [gifsicle](g/gifsicle.md) * [GIMIC](g/GIMIC.md) - * [gimkl](g/gimkl.md) * [GimmeMotifs](g/GimmeMotifs.md) * [GIMP](g/GIMP.md) - * [gimpi](g/gimpi.md) - * [gimpic](g/gimpic.md) - * [GIMPS](g/GIMPS.md) - * [giolf](g/giolf.md) - * [giolfc](g/giolfc.md) * [Giotto-Suite](g/Giotto-Suite.md) * [git](g/git.md) * [git-annex](g/git-annex.md) - * [git-extras](g/git-extras.md) * [git-lfs](g/git-lfs.md) * [GitPython](g/GitPython.md) * [Givaro](g/Givaro.md) * [Giza](g/Giza.md) - * [GKeyll](g/GKeyll.md) * [GKlib-METIS](g/GKlib-METIS.md) * [gkmSVM](g/gkmSVM.md) * [GL2PS](g/GL2PS.md) - * [Glade](g/Glade.md) * [glew](g/glew.md) * [GLFW](g/GLFW.md) * [GLI](g/GLI.md) * [GLib](g/GLib.md) * [glib-networking](g/glib-networking.md) - * [glibc](g/glibc.md) * [GLibmm](g/GLibmm.md) - * [GLIMMER](g/GLIMMER.md) * [GlimmerHMM](g/GlimmerHMM.md) * [GLIMPSE](g/GLIMPSE.md) * [GLM](g/GLM.md) * [GLM-AED](g/GLM-AED.md) * [GlobalArrays](g/GlobalArrays.md) * [Globus-CLI](g/Globus-CLI.md) - * [GlobusConnectPersonal](g/GlobusConnectPersonal.md) * [glog](g/glog.md) * [GLPK](g/GLPK.md) - * [glproto](g/glproto.md) - * [Glucose](g/Glucose.md) * [GMAP-GSNAP](g/GMAP-GSNAP.md) * [GMP](g/GMP.md) * [GMP-ECM](g/GMP-ECM.md) * [gmpflf](g/gmpflf.md) * [gmpich](g/gmpich.md) - * [gmpolf](g/gmpolf.md) * [gmpy2](g/gmpy2.md) * [gmsh](g/gmsh.md) * [GMT](g/GMT.md) - * [gmvapich2](g/gmvapich2.md) - * [gmvolf](g/gmvolf.md) - * [GNU](g/GNU.md) * [gnupg-bundle](g/gnupg-bundle.md) * [gnuplot](g/gnuplot.md) * [GnuTLS](g/GnuTLS.md) @@ -1196,15 +911,13 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [GOBNILP](g/GOBNILP.md) * [Godon](g/Godon.md) * [gofasta](g/gofasta.md) - * [golf](g/golf.md) * [GOMC](g/GOMC.md) * [gomkl](g/gomkl.md) * [gompi](g/gompi.md) * [gompic](g/gompic.md) - * [google-java-format](g/google-java-format.md) * [googletest](g/googletest.md) + * [GOTCHA](g/GOTCHA.md) * [gotree](g/gotree.md) - * [GP2C](g/GP2C.md) * [GPAW](g/GPAW.md) * [GPAW-setups](g/GPAW-setups.md) * [gperf](g/gperf.md) @@ -1215,43 +928,31 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [GPyOpt](g/GPyOpt.md) * [GPyTorch](g/GPyTorch.md) * [Grace](g/Grace.md) + * [Gradio](g/Gradio.md) * [Gradle](g/Gradle.md) - * [gradunwarp](g/gradunwarp.md) * [graph-tool](g/graph-tool.md) + * [GraphAligner](g/GraphAligner.md) * [GraphDB](g/GraphDB.md) * [Graphene](g/Graphene.md) * [GraphicsMagick](g/GraphicsMagick.md) * [graphite2](g/graphite2.md) - * [GraPhlAn](g/GraPhlAn.md) - * [GraphMap](g/GraphMap.md) - * [GraphMap2](g/GraphMap2.md) * [Graphviz](g/Graphviz.md) * [graphviz-python](g/graphviz-python.md) - * [GRASP](g/GRASP.md) * [GRASP-suite](g/GRASP-suite.md) * [GRASS](g/GRASS.md) * [Greenlet](g/Greenlet.md) - * [Grep](g/Grep.md) - * [gretl](g/gretl.md) - * [grib_api](g/grib_api.md) * [grid](g/grid.md) * [GRIDSS](g/GRIDSS.md) - * [GRIT](g/GRIT.md) - * [GRNBoost](g/GRNBoost.md) * [groff](g/groff.md) - * [GroIMP](g/GroIMP.md) * [GROMACS](g/GROMACS.md) - * [GromacsWrapper](g/GromacsWrapper.md) + * [GROMACS-LS](g/GROMACS-LS.md) * [Groovy](g/Groovy.md) * [gRPC](g/gRPC.md) * [grpcio](g/grpcio.md) * [GSD](g/GSD.md) * [GSEA](g/GSEA.md) - * [gsettings-desktop-schemas](g/gsettings-desktop-schemas.md) * [GSL](g/GSL.md) - * [gSOAP](g/gSOAP.md) * [gspell](g/gspell.md) - * [gsport](g/gsport.md) * [GST-plugins-bad](g/GST-plugins-bad.md) * [GST-plugins-base](g/GST-plugins-base.md) * [GStreamer](g/GStreamer.md) @@ -1264,33 +965,30 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [GTK3](g/GTK3.md) * [GTK4](g/GTK4.md) * [GtkSourceView](g/GtkSourceView.md) - * [GTOOL](g/GTOOL.md) * [GTS](g/GTS.md) * [Gubbins](g/Gubbins.md) - * [guenomu](g/guenomu.md) * [GUIDANCE](g/GUIDANCE.md) * [Guile](g/Guile.md) * [GULP](g/GULP.md) * [Gurobi](g/Gurobi.md) * [GUSHR](g/GUSHR.md) + * [gym-pybullet-drones](g/gym-pybullet-drones.md) * [Gymnasium](g/Gymnasium.md) * [gzip](g/gzip.md) * [h](h/index.md) * [h4toh5](h/h4toh5.md) - * [H5hut](h/H5hut.md) * [h5netcdf](h/h5netcdf.md) * [h5py](h/h5py.md) * [Hadoop](h/Hadoop.md) * [HAL](h/HAL.md) * [hampel](h/hampel.md) - * [hanythingondemand](h/hanythingondemand.md) - * [HAPGEN2](h/HAPGEN2.md) * [HarfBuzz](h/HarfBuzz.md) * [Harminv](h/Harminv.md) * [harmony](h/harmony.md) + * [harvest-tools](h/harvest-tools.md) + * [hatch](h/hatch.md) * [hatch-jupyter-builder](h/hatch-jupyter-builder.md) * [hatchling](h/hatchling.md) - * [HBase](h/HBase.md) * [HD-BET](h/HD-BET.md) * [HDBSCAN](h/HDBSCAN.md) * [HDDM](h/HDDM.md) @@ -1299,15 +997,10 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [HDF-EOS2](h/HDF-EOS2.md) * [HDF-EOS5](h/HDF-EOS5.md) * [HDF5](h/HDF5.md) - * [hdf5storage](h/hdf5storage.md) - * [HDFView](h/HDFView.md) * [hdWGCNA](h/hdWGCNA.md) - * [HEALPix](h/HEALPix.md) * [Health-GPS](h/Health-GPS.md) - * [heaptrack](h/heaptrack.md) * [hector](h/hector.md) * [HeFFTe](h/HeFFTe.md) - * [Hello](h/Hello.md) * [help2man](h/help2man.md) * [HepMC](h/HepMC.md) * [HepMC3](h/HepMC3.md) @@ -1319,41 +1012,37 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [hic-straw](h/hic-straw.md) * [HiCExplorer](h/HiCExplorer.md) * [HiCMatrix](h/HiCMatrix.md) - * [hierfstat](h/hierfstat.md) * [hifiasm](h/hifiasm.md) * [HighFive](h/HighFive.md) * [HiGHS](h/HiGHS.md) * [Highway](h/Highway.md) * [HIP](h/HIP.md) * [hipify-clang](h/hipify-clang.md) - * [HIPS](h/HIPS.md) * [hipSYCL](h/hipSYCL.md) * [hiredis](h/hiredis.md) * [HISAT2](h/HISAT2.md) * [histolab](h/histolab.md) * [hivtrace](h/hivtrace.md) - * [hl7apy](h/hl7apy.md) - * [HLAminer](h/HLAminer.md) * [hmmcopy_utils](h/hmmcopy_utils.md) * [HMMER](h/HMMER.md) * [HMMER2](h/HMMER2.md) * [hmmlearn](h/hmmlearn.md) - * [HOME](h/HOME.md) + * [HNOCA-tools](h/HNOCA-tools.md) + * [HOLE2](h/HOLE2.md) + * [HolisticTraceAnalysis](h/HolisticTraceAnalysis.md) * [HOMER](h/HOMER.md) * [HOOMD-blue](h/HOOMD-blue.md) * [Horovod](h/Horovod.md) - * [horton](h/horton.md) * [how_are_we_stranded_here](h/how_are_we_stranded_here.md) * [HPCC](h/HPCC.md) * [HPCG](h/HPCG.md) - * [HPCX](h/HPCX.md) * [HPDBSCAN](h/HPDBSCAN.md) * [HPL](h/HPL.md) + * [HPX](h/HPX.md) * [htop](h/htop.md) * [HTSeq](h/HTSeq.md) * [HTSlib](h/HTSlib.md) * [HTSplotter](h/HTSplotter.md) - * [hub](h/hub.md) * [humann](h/humann.md) * [hunspell](h/hunspell.md) * [hwloc](h/hwloc.md) @@ -1361,48 +1050,32 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [Hydra](h/Hydra.md) * [Hyperopt](h/Hyperopt.md) * [HyperQueue](h/HyperQueue.md) - * [hyperspy](h/hyperspy.md) * [HyPhy](h/HyPhy.md) - * [HyPo](h/HyPo.md) * [hypothesis](h/hypothesis.md) * [Hypre](h/Hypre.md) * [i](i/index.md) - * [i-cisTarget](i/i-cisTarget.md) - * [i-PI](i/i-PI.md) - * [I-TASSER](i/I-TASSER.md) * [i7z](i/i7z.md) - * [ICA-AROMA](i/ICA-AROMA.md) - * [icc](i/icc.md) * [iccifort](i/iccifort.md) * [iccifortcuda](i/iccifortcuda.md) * [iced](i/iced.md) * [ichorCNA](i/ichorCNA.md) - * [icmake](i/icmake.md) * [ICON](i/ICON.md) - * [iCount](i/iCount.md) * [ICU](i/ICU.md) * [IDBA-UD](i/IDBA-UD.md) * [idemux](i/idemux.md) * [IDG](i/IDG.md) - * [ieeg-cli](i/ieeg-cli.md) * [IEntropy](i/IEntropy.md) - * [ifort](i/ifort.md) * [IgBLAST](i/IgBLAST.md) * [IGMPlot](i/IGMPlot.md) * [igraph](i/igraph.md) * [IGV](i/IGV.md) - * [igv-reports](i/igv-reports.md) * [igvShiny](i/igvShiny.md) - * [IGVTools](i/IGVTools.md) * [iibff](i/iibff.md) * [iimkl](i/iimkl.md) * [iimpi](i/iimpi.md) * [iimpic](i/iimpic.md) * [IJulia](i/IJulia.md) - * [ILAMB](i/ILAMB.md) * [ilastik-napari](i/ilastik-napari.md) - * [IMa2](i/IMa2.md) - * [IMa2p](i/IMa2p.md) * [IMAGE](i/IMAGE.md) * [imagecodecs](i/imagecodecs.md) * [imageio](i/imageio.md) @@ -1417,63 +1090,45 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [imkl-FFTW](i/imkl-FFTW.md) * [IML](i/IML.md) * [Imlib2](i/Imlib2.md) - * [immunedeconv](i/immunedeconv.md) * [IMOD](i/IMOD.md) * [impi](i/impi.md) - * [IMPUTE2](i/IMPUTE2.md) * [imutils](i/imutils.md) * [InChI](i/InChI.md) * [indicators](i/indicators.md) - * [Inelastica](i/Inelastica.md) * [inferCNV](i/inferCNV.md) * [infercnvpy](i/infercnvpy.md) * [Inferelator](i/Inferelator.md) * [Infernal](i/Infernal.md) * [inflection](i/inflection.md) - * [Infomap](i/Infomap.md) * [inih](i/inih.md) * [inline](i/inline.md) * [InParanoid](i/InParanoid.md) - * [inputproto](i/inputproto.md) * [Inspector](i/Inspector.md) - * [IntaRNA](i/IntaRNA.md) - * [INTEGRATE](i/INTEGRATE.md) - * [INTEGRATE-Neo](i/INTEGRATE-Neo.md) * [intel](i/intel.md) * [intel-compilers](i/intel-compilers.md) * [IntelClusterChecker](i/IntelClusterChecker.md) * [intelcuda](i/intelcuda.md) * [IntelDAAL](i/IntelDAAL.md) - * [IntelPython](i/IntelPython.md) * [InterOp](i/InterOp.md) * [InterProScan](i/InterProScan.md) * [InterProScan_data](i/InterProScan_data.md) * [intervaltree](i/intervaltree.md) * [intervaltree-python](i/intervaltree-python.md) * [intltool](i/intltool.md) - * [io_lib](i/io_lib.md) - * [ioapi](i/ioapi.md) * [iodata](i/iodata.md) * [iomkl](i/iomkl.md) * [iompi](i/iompi.md) * [IonQuant](i/IonQuant.md) * [IOR](i/IOR.md) - * [IOzone](i/IOzone.md) * [iperf](i/iperf.md) - * [IPM](i/IPM.md) - * [Ipopt](i/Ipopt.md) - * [ipp](i/ipp.md) - * [IPy](i/IPy.md) * [ipympl](i/ipympl.md) - * [ipyparallel](i/ipyparallel.md) - * [ipyrad](i/ipyrad.md) * [IPython](i/IPython.md) * [IQ-TREE](i/IQ-TREE.md) * [Iris](i/Iris.md) * [IRkernel](i/IRkernel.md) * [irodsfs](i/irodsfs.md) - * [IronPython](i/IronPython.md) * [ISA-L](i/ISA-L.md) + * [ISCE2](i/ISCE2.md) * [ISL](i/ISL.md) * [isoCirc](i/isoCirc.md) * [IsoformSwitchAnalyzeR](i/IsoformSwitchAnalyzeR.md) @@ -1483,29 +1138,24 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [ispc](i/ispc.md) * [itac](i/itac.md) * [ITK](i/ITK.md) - * [itpp](i/itpp.md) * [ITSTool](i/ITSTool.md) * [ITSx](i/ITSx.md) * [iVar](i/iVar.md) * [j](j/index.md) + * [JACUSA2helper](j/JACUSA2helper.md) * [JAGS](j/JAGS.md) * [Jansson](j/Jansson.md) * [Jasmine](j/Jasmine.md) * [JasPer](j/JasPer.md) * [Java](j/Java.md) - * [JavaFX](j/JavaFX.md) * [jax](j/jax.md) - * [JAXFrontCE](j/JAXFrontCE.md) * [jbigkit](j/jbigkit.md) * [Jblob](j/Jblob.md) * [jedi](j/jedi.md) * [jedi-language-server](j/jedi-language-server.md) * [Jellyfish](j/Jellyfish.md) * [jemalloc](j/jemalloc.md) - * [jhbuild](j/jhbuild.md) - * [JiTCODE](j/JiTCODE.md) * [jiter](j/jiter.md) - * [jModelTest](j/jModelTest.md) * [Jmol](j/Jmol.md) * [Jorg](j/Jorg.md) * [joypy](j/joypy.md) @@ -1514,10 +1164,9 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [json-fortran](j/json-fortran.md) * [JSON-GLib](j/JSON-GLib.md) * [JsonCpp](j/JsonCpp.md) - * [JUBE](j/JUBE.md) * [Judy](j/Judy.md) * [Julia](j/Julia.md) - * [JUnit](j/JUnit.md) + * [juliaup](j/juliaup.md) * [junos-eznc](j/junos-eznc.md) * [Jupyter-bundle](j/Jupyter-bundle.md) * [jupyter-collaboration](j/jupyter-collaboration.md) @@ -1533,42 +1182,32 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [jupyterlab-lmod](j/jupyterlab-lmod.md) * [jupyterlmod](j/jupyterlmod.md) * [JupyterNotebook](j/JupyterNotebook.md) - * [JWM](j/JWM.md) * [jxrlib](j/jxrlib.md) * [k](k/index.md) + * [kaggle](k/kaggle.md) * [KaHIP](k/KaHIP.md) - * [Kaiju](k/Kaiju.md) * [Kaleido](k/Kaleido.md) * [Kalign](k/Kalign.md) * [kallisto](k/kallisto.md) - * [KAT](k/KAT.md) * [kb-python](k/kb-python.md) - * [kbproto](k/kbproto.md) - * [kedro](k/kedro.md) * [Kent_tools](k/Kent_tools.md) * [Keras](k/Keras.md) * [KerasTuner](k/KerasTuner.md) - * [khmer](k/khmer.md) * [kim-api](k/kim-api.md) * [kineto](k/kineto.md) * [king](k/king.md) * [KITE](k/KITE.md) * [kma](k/kma.md) * [KMC](k/KMC.md) + * [KMCLib](k/KMCLib.md) * [KMCP](k/KMCP.md) - * [KmerGenie](k/KmerGenie.md) * [kneaddata](k/kneaddata.md) - * [KNIME](k/KNIME.md) - * [kpcalg](k/kpcalg.md) * [Kraken](k/Kraken.md) * [Kraken2](k/Kraken2.md) * [KrakenUniq](k/KrakenUniq.md) - * [Kratos](k/Kratos.md) * [krbalancing](k/krbalancing.md) * [KronaTools](k/KronaTools.md) - * [kwant](k/kwant.md) - * [KWIML](k/KWIML.md) - * [kWIP](k/kWIP.md) + * [kyber](k/kyber.md) * [KyotoCabinet](k/KyotoCabinet.md) * [l](l/index.md) * [L_RNA_scaffolder](l/L_RNA_scaffolder.md) @@ -1578,7 +1217,6 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [lagrangian-filtering](l/lagrangian-filtering.md) * [LAME](l/LAME.md) * [LAMMPS](l/LAMMPS.md) - * [lancet](l/lancet.md) * [LangChain](l/LangChain.md) * [langchain-anthropic](l/langchain-anthropic.md) * [langchain-mistralai](l/langchain-mistralai.md) @@ -1591,16 +1229,12 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [LayoutParser](l/LayoutParser.md) * [LBFGS++](l/LBFGS++.md) * [lcalc](l/lcalc.md) - * [LCov](l/LCov.md) * [LDC](l/LDC.md) * [lDDT](l/lDDT.md) - * [LeadIT](l/LeadIT.md) * [leafcutter](l/leafcutter.md) * [leidenalg](l/leidenalg.md) - * [LEMON](l/LEMON.md) * [Leptonica](l/Leptonica.md) * [LERC](l/LERC.md) - * [less](l/less.md) * [LevelDB](l/LevelDB.md) * [Levenshtein](l/Levenshtein.md) * [lftp](l/lftp.md) @@ -1611,20 +1245,15 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [libaed2](l/libaed2.md) * [libaio](l/libaio.md) * [libarchive](l/libarchive.md) - * [libav](l/libav.md) * [libavif](l/libavif.md) * [libbaseencode](l/libbaseencode.md) * [libBigWig](l/libBigWig.md) - * [libbitmask](l/libbitmask.md) * [libbraiding](l/libbraiding.md) - * [libcdms](l/libcdms.md) * [libcerf](l/libcerf.md) * [libcint](l/libcint.md) * [libcircle](l/libcircle.md) - * [libcmaes](l/libcmaes.md) * [libconfig](l/libconfig.md) * [libcotp](l/libcotp.md) - * [libcpuset](l/libcpuset.md) * [libcroco](l/libcroco.md) * [libctl](l/libctl.md) * [libdap](l/libdap.md) @@ -1632,7 +1261,6 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [libdeflate](l/libdeflate.md) * [libdivsufsort](l/libdivsufsort.md) * [libdrm](l/libdrm.md) - * [libdrs](l/libdrs.md) * [libdwarf](l/libdwarf.md) * [libedit](l/libedit.md) * [libelf](l/libelf.md) @@ -1646,7 +1274,6 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [libffcall](l/libffcall.md) * [libffi](l/libffi.md) * [libFLAME](l/libFLAME.md) - * [libfontenc](l/libfontenc.md) * [libfyaml](l/libfyaml.md) * [libgcrypt](l/libgcrypt.md) * [libgd](l/libgd.md) @@ -1654,26 +1281,20 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [libGDSII](l/libGDSII.md) * [libgeotiff](l/libgeotiff.md) * [libgit2](l/libgit2.md) - * [libglade](l/libglade.md) * [libGLU](l/libGLU.md) * [libglvnd](l/libglvnd.md) * [libgpg-error](l/libgpg-error.md) * [libgpuarray](l/libgpuarray.md) * [libGridXC](l/libGridXC.md) - * [libgtextutils](l/libgtextutils.md) * [libgxps](l/libgxps.md) * [libhandy](l/libhandy.md) * [libharu](l/libharu.md) * [libheif](l/libheif.md) * [libhomfly](l/libhomfly.md) - * [libibmad](l/libibmad.md) - * [libibumad](l/libibumad.md) - * [libICE](l/libICE.md) * [libiconv](l/libiconv.md) * [libidn](l/libidn.md) * [libidn2](l/libidn2.md) * [Libint](l/Libint.md) - * [LiBis](l/LiBis.md) * [libjpeg-turbo](l/libjpeg-turbo.md) * [libjxl](l/libjxl.md) * [libleidenalg](l/libleidenalg.md) @@ -1684,22 +1305,17 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [libmbd](l/libmbd.md) * [libMemcached](l/libMemcached.md) * [libmicrohttpd](l/libmicrohttpd.md) - * [libmo_unpack](l/libmo_unpack.md) * [libmypaint](l/libmypaint.md) * [libnsl](l/libnsl.md) * [libobjcryst](l/libobjcryst.md) * [libogg](l/libogg.md) * [libopus](l/libopus.md) - * [libosmium](l/libosmium.md) * [libpci](l/libpci.md) * [libpciaccess](l/libpciaccess.md) - * [libplinkio](l/libplinkio.md) * [libpng](l/libpng.md) * [libpsl](l/libpsl.md) * [libPSML](l/libPSML.md) - * [libpsortb](l/libpsortb.md) * [libpspio](l/libpspio.md) - * [libpthread-stubs](l/libpthread-stubs.md) * [libQGLViewer](l/libQGLViewer.md) * [libreadline](l/libreadline.md) * [libRmath](l/libRmath.md) @@ -1707,24 +1323,20 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [librsb](l/librsb.md) * [librsvg](l/librsvg.md) * [librttopo](l/librttopo.md) - * [libsamplerate](l/libsamplerate.md) * [libSBML](l/libSBML.md) * [libsigc++](l/libsigc++.md) * [libsigsegv](l/libsigsegv.md) - * [libSM](l/libSM.md) * [libsndfile](l/libsndfile.md) * [libsodium](l/libsodium.md) * [LibSoup](l/LibSoup.md) * [libspatialindex](l/libspatialindex.md) * [libspatialite](l/libspatialite.md) * [libspectre](l/libspectre.md) - * [libssh](l/libssh.md) * [libStatGen](l/libStatGen.md) * [libsupermesh](l/libsupermesh.md) * [LIBSVM](l/LIBSVM.md) * [LIBSVM-MATLAB](l/LIBSVM-MATLAB.md) * [LIBSVM-Python](l/LIBSVM-Python.md) - * [libtar](l/libtar.md) * [libtasn1](l/libtasn1.md) * [libtecla](l/libtecla.md) * [LibTIFF](l/LibTIFF.md) @@ -1733,71 +1345,45 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [libtree](l/libtree.md) * [libunistring](l/libunistring.md) * [libunwind](l/libunwind.md) - * [libutempter](l/libutempter.md) - * [LibUUID](l/LibUUID.md) * [libuv](l/libuv.md) * [libvdwxc](l/libvdwxc.md) + * [libvips](l/libvips.md) * [libvorbis](l/libvorbis.md) * [libvori](l/libvori.md) * [libWallModelledLES](l/libWallModelledLES.md) * [libwebp](l/libwebp.md) * [libwpe](l/libwpe.md) - * [libX11](l/libX11.md) - * [libXau](l/libXau.md) * [libxc](l/libxc.md) - * [libxcb](l/libxcb.md) - * [libXcursor](l/libXcursor.md) - * [libXdamage](l/libXdamage.md) - * [libXdmcp](l/libXdmcp.md) - * [libXext](l/libXext.md) - * [libXfixes](l/libXfixes.md) - * [libXfont](l/libXfont.md) - * [libXft](l/libXft.md) - * [libXi](l/libXi.md) - * [libXinerama](l/libXinerama.md) - * [libxkbcommon](l/libxkbcommon.md) * [libxml++](l/libxml++.md) * [libxml2](l/libxml2.md) * [libxml2-python](l/libxml2-python.md) - * [libXmu](l/libXmu.md) - * [libXp](l/libXp.md) - * [libXpm](l/libXpm.md) - * [libXrandr](l/libXrandr.md) - * [libXrender](l/libXrender.md) * [libxslt](l/libxslt.md) * [libxsmm](l/libxsmm.md) - * [libXt](l/libXt.md) - * [libXxf86vm](l/libXxf86vm.md) * [libyaml](l/libyaml.md) - * [libzeep](l/libzeep.md) + * [libyuv](l/libyuv.md) * [libzip](l/libzip.md) - * [lie_learn](l/lie_learn.md) * [lifelines](l/lifelines.md) * [Lighter](l/Lighter.md) + * [LightGBM](l/LightGBM.md) * [Lightning](l/Lightning.md) - * [liknorm](l/liknorm.md) * [likwid](l/likwid.md) * [lil-aretomo](l/lil-aretomo.md) - * [limix](l/limix.md) + * [LIME](l/LIME.md) * [LinBox](l/LinBox.md) * [line_profiler](l/line_profiler.md) - * [Lingeling](l/Lingeling.md) + * [LIQA](l/LIQA.md) * [LISFLOOD-FP](l/LISFLOOD-FP.md) * [lit](l/lit.md) * [LittleCMS](l/LittleCMS.md) - * [LLDB](l/LLDB.md) + * [llama-cpp-python](l/llama-cpp-python.md) + * [llama.cpp](l/llama.cpp.md) * [LLVM](l/LLVM.md) * [LMDB](l/LMDB.md) * [LMfit](l/LMfit.md) - * [Lmod](l/Lmod.md) * [lmoments3](l/lmoments3.md) * [LncLOOM](l/LncLOOM.md) + * [LOBSTER](l/LOBSTER.md) * [LocARNA](l/LocARNA.md) - * [LoFreq](l/LoFreq.md) - * [Log-Log4perl](l/Log-Log4perl.md) - * [logaddexp](l/logaddexp.md) - * [LOHHLA](l/LOHHLA.md) - * [Loki](l/Loki.md) * [longestrunsubsequence](l/longestrunsubsequence.md) * [longread_umi](l/longread_umi.md) * [Longshot](l/Longshot.md) @@ -1813,19 +1399,13 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [lrslib](l/lrslib.md) * [LS-PrePost](l/LS-PrePost.md) * [LSD2](l/LSD2.md) - * [LSMS](l/LSMS.md) * [LTR_retriever](l/LTR_retriever.md) - * [LtrDetector](l/LtrDetector.md) * [Lua](l/Lua.md) * [LuaJIT](l/LuaJIT.md) - * [LuaJIT2-OpenResty](l/LuaJIT2-OpenResty.md) * [LuaRocks](l/LuaRocks.md) - * [Lucene-Geo-Gazetteer](l/Lucene-Geo-Gazetteer.md) * [LUMPY](l/LUMPY.md) - * [LUSCUS](l/LUSCUS.md) * [lwgrp](l/lwgrp.md) * [lxml](l/lxml.md) - * [lynx](l/lynx.md) * [lz4](l/lz4.md) * [LZO](l/LZO.md) * [m](m/index.md) @@ -1834,7 +1414,6 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [M4](m/M4.md) * [m4ri](m/m4ri.md) * [m4rie](m/m4rie.md) - * [MACH](m/MACH.md) * [MACS2](m/MACS2.md) * [MACS3](m/MACS3.md) * [MACSE](m/MACSE.md) @@ -1842,16 +1421,12 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [MAFFT](m/MAFFT.md) * [MAGeCK](m/MAGeCK.md) * [MAGIC](m/MAGIC.md) - * [magick](m/magick.md) * [Magics](m/Magics.md) * [magma](m/magma.md) * [MAGMA-gene-analysis](m/MAGMA-gene-analysis.md) - * [MagresPython](m/MagresPython.md) * [mahotas](m/mahotas.md) - * [MAJIQ](m/MAJIQ.md) * [make](m/make.md) * [makedepend](m/makedepend.md) - * [makedepf90](m/makedepf90.md) * [makefun](m/makefun.md) * [makeinfo](m/makeinfo.md) * [MAKER](m/MAKER.md) @@ -1863,18 +1438,16 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [manta](m/manta.md) * [mapDamage](m/mapDamage.md) * [Maple](m/Maple.md) - * [MapSplice](m/MapSplice.md) - * [Maq](m/Maq.md) * [MariaDB](m/MariaDB.md) * [MariaDB-connector-c](m/MariaDB-connector-c.md) * [Markdown](m/Markdown.md) - * [MARS](m/MARS.md) * [Mash](m/Mash.md) + * [MashMap](m/MashMap.md) * [Mashtree](m/Mashtree.md) * [MaSuRCA](m/MaSuRCA.md) * [MATES](m/MATES.md) * [Mathematica](m/Mathematica.md) - * [MathGL](m/MathGL.md) + * [MathWorksServiceHost](m/MathWorksServiceHost.md) * [MATIO](m/MATIO.md) * [MATLAB](m/MATLAB.md) * [MATLAB-Engine](m/MATLAB-Engine.md) @@ -1884,51 +1457,35 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [MATSim](m/MATSim.md) * [maturin](m/maturin.md) * [Maude](m/Maude.md) - * [mauveAligner](m/mauveAligner.md) * [Maven](m/Maven.md) - * [mawk](m/mawk.md) * [MaxBin](m/MaxBin.md) * [MaxQuant](m/MaxQuant.md) * [mayavi](m/mayavi.md) * [maze](m/maze.md) * [MbedTLS](m/MbedTLS.md) * [MBROLA](m/MBROLA.md) - * [mbuffer](m/mbuffer.md) * [MBX](m/MBX.md) - * [mc](m/mc.md) * [MCL](m/MCL.md) * [mcqd](m/mcqd.md) * [MCR](m/MCR.md) * [mctc-lib](m/mctc-lib.md) * [mcu](m/mcu.md) * [MDAnalysis](m/MDAnalysis.md) - * [MDBM](m/MDBM.md) * [MDI](m/MDI.md) - * [MDSplus](m/MDSplus.md) - * [MDSplus-Java](m/MDSplus-Java.md) - * [MDSplus-Python](m/MDSplus-Python.md) - * [mdtest](m/mdtest.md) + * [MDStress](m/MDStress.md) * [MDTraj](m/MDTraj.md) * [mdust](m/mdust.md) * [meboot](m/meboot.md) * [medaka](m/medaka.md) - * [medImgProc](m/medImgProc.md) * [MedPy](m/MedPy.md) * [Meep](m/Meep.md) * [MEGA](m/MEGA.md) - * [MEGACC](m/MEGACC.md) * [MEGAHIT](m/MEGAHIT.md) * [Megalodon](m/Megalodon.md) * [MEGAN](m/MEGAN.md) - * [Meld](m/Meld.md) - * [MEM](m/MEM.md) * [MEME](m/MEME.md) - * [memkind](m/memkind.md) - * [memory-profiler](m/memory-profiler.md) * [MEMOTE](m/MEMOTE.md) * [memtester](m/memtester.md) - * [meRanTK](m/meRanTK.md) - * [MERCKX](m/MERCKX.md) * [Mercurial](m/Mercurial.md) * [Mesa](m/Mesa.md) * [Mesa-demos](m/Mesa-demos.md) @@ -1939,30 +1496,24 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [Meson](m/Meson.md) * [meson-python](m/meson-python.md) * [Mesquite](m/Mesquite.md) - * [MESS](m/MESS.md) * [MetaBAT](m/MetaBAT.md) - * [MetaboAnalystR](m/MetaboAnalystR.md) * [MetaDecoder](m/MetaDecoder.md) - * [metaerg](m/metaerg.md) * [MetaEuk](m/MetaEuk.md) * [MetaGeneAnnotator](m/MetaGeneAnnotator.md) - * [Metagenome-Atlas](m/Metagenome-Atlas.md) * [Metal](m/Metal.md) * [MetalWalls](m/MetalWalls.md) * [MetaMorpheus](m/MetaMorpheus.md) * [MetaPhlAn](m/MetaPhlAn.md) - * [MetaPhlAn2](m/MetaPhlAn2.md) * [metaWRAP](m/metaWRAP.md) - * [Metaxa2](m/Metaxa2.md) * [meteogrid](m/meteogrid.md) * [methylartist](m/methylartist.md) * [MethylDackel](m/MethylDackel.md) * [methylpy](m/methylpy.md) * [METIS](m/METIS.md) + * [MFiX](m/MFiX.md) * [mfqe](m/mfqe.md) * [mgen](m/mgen.md) * [mgltools](m/mgltools.md) - * [mhcflurry](m/mhcflurry.md) * [mhcnuggets](m/mhcnuggets.md) * [MICOM](m/MICOM.md) * [micro-sam](m/micro-sam.md) @@ -1973,63 +1524,49 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [Mikado](m/Mikado.md) * [Miller](m/Miller.md) * [mimalloc](m/mimalloc.md) - * [MINC](m/MINC.md) - * [MinCED](m/MinCED.md) * [Mini-XML](m/Mini-XML.md) * [miniasm](m/miniasm.md) - * [minibar](m/minibar.md) - * [MiniCARD](m/MiniCARD.md) - * [Miniconda2](m/Miniconda2.md) * [Miniconda3](m/Miniconda3.md) - * [minieigen](m/minieigen.md) * [Miniforge3](m/Miniforge3.md) * [Minimac4](m/Minimac4.md) * [minimap2](m/minimap2.md) * [Minipolish](m/Minipolish.md) * [miniprot](m/miniprot.md) - * [MiniSat](m/MiniSat.md) * [minizip](m/minizip.md) * [MINPACK](m/MINPACK.md) * [MinPath](m/MinPath.md) * [MIRA](m/MIRA.md) - * [miRDeep2](m/miRDeep2.md) * [Mish-Cuda](m/Mish-Cuda.md) - * [misha](m/misha.md) * [MITgcmutils](m/MITgcmutils.md) * [MITObim](m/MITObim.md) + * [MitoFinder](m/MitoFinder.md) * [MitoHiFi](m/MitoHiFi.md) - * [MitoZ](m/MitoZ.md) * [MiXCR](m/MiXCR.md) * [MixMHC2pred](m/MixMHC2pred.md) - * [mkl-dnn](m/mkl-dnn.md) * [mkl-service](m/mkl-service.md) - * [mkl_fft](m/mkl_fft.md) * [ml-collections](m/ml-collections.md) * [ml_dtypes](m/ml_dtypes.md) - * [MLC](m/MLC.md) * [MLflow](m/MLflow.md) * [mlpack](m/mlpack.md) - * [MLxtend](m/MLxtend.md) + * [mlst](m/mlst.md) * [mm-common](m/mm-common.md) * [Mmg](m/Mmg.md) - * [MMSEQ](m/MMSEQ.md) * [MMseqs2](m/MMseqs2.md) * [mmtf-cpp](m/mmtf-cpp.md) * [MNE-Python](m/MNE-Python.md) * [MOABB](m/MOABB.md) - * [MOABS](m/MOABS.md) - * [MOB-suite](m/MOB-suite.md) * [ModelTest-NG](m/ModelTest-NG.md) * [MODFLOW](m/MODFLOW.md) - * [modred](m/modred.md) + * [modin](m/modin.md) + * [modkit](m/modkit.md) * [MOFA2](m/MOFA2.md) * [MOKIT](m/MOKIT.md) - * [Molcas](m/Molcas.md) * [mold](m/mold.md) * [Molden](m/Molden.md) * [molecularGSM](m/molecularGSM.md) - * [Molekel](m/Molekel.md) + * [MOLGW](m/MOLGW.md) * [molmod](m/molmod.md) + * [MoloVol](m/MoloVol.md) * [Molpro](m/Molpro.md) * [MONA](m/MONA.md) * [MONAI](m/MONAI.md) @@ -2037,17 +1574,11 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [mongolite](m/mongolite.md) * [Mono](m/Mono.md) * [Monocle3](m/Monocle3.md) - * [moonjit](m/moonjit.md) - * [MOOSE](m/MOOSE.md) - * [mordecai](m/mordecai.md) - * [MoreRONN](m/MoreRONN.md) * [morphosamplers](m/morphosamplers.md) * [mosdepth](m/mosdepth.md) - * [Mothur](m/Mothur.md) * [motif](m/motif.md) * [MotionCor2](m/MotionCor2.md) * [MotionCor3](m/MotionCor3.md) - * [motionSegmentation](m/motionSegmentation.md) * [MoviePy](m/MoviePy.md) * [mpath](m/mpath.md) * [MPB](m/MPB.md) @@ -2056,61 +1587,41 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [MPFR](m/MPFR.md) * [mpi4py](m/mpi4py.md) * [MPICH](m/MPICH.md) - * [MPICH2](m/MPICH2.md) * [mpifileutils](m/mpifileutils.md) - * [mpiP](m/mpiP.md) - * [MPJ-Express](m/MPJ-Express.md) + * [mpl-ascii](m/mpl-ascii.md) * [mpmath](m/mpmath.md) * [MrBayes](m/MrBayes.md) * [mrcfile](m/mrcfile.md) * [MRChem](m/MRChem.md) * [MRCPP](m/MRCPP.md) - * [MRIcron](m/MRIcron.md) * [MRPRESSO](m/MRPRESSO.md) * [MRtrix](m/MRtrix.md) * [MSFragger](m/MSFragger.md) * [msgpack-c](m/msgpack-c.md) - * [MSM](m/MSM.md) - * [MSPC](m/MSPC.md) + * [msisensor-pro](m/msisensor-pro.md) * [msprime](m/msprime.md) * [mstore](m/mstore.md) - * [MTL4](m/MTL4.md) * [MuJoCo](m/MuJoCo.md) * [mujoco-py](m/mujoco-py.md) * [multicharge](m/multicharge.md) * [multichoose](m/multichoose.md) * [MultilevelEstimators](m/MultilevelEstimators.md) - * [MultiNest](m/MultiNest.md) * [multiprocess](m/multiprocess.md) * [MultiQC](m/MultiQC.md) - * [Multiwfn](m/Multiwfn.md) * [muMerge](m/muMerge.md) * [MUMmer](m/MUMmer.md) * [mumott](m/mumott.md) * [MUMPS](m/MUMPS.md) * [muParser](m/muParser.md) * [muparserx](m/muparserx.md) - * [MuPeXI](m/MuPeXI.md) * [MUSCLE](m/MUSCLE.md) * [MUSCLE3](m/MUSCLE3.md) - * [MuSiC](m/MuSiC.md) * [MUST](m/MUST.md) - * [MuTect](m/MuTect.md) - * [mutil](m/mutil.md) - * [MVAPICH2](m/MVAPICH2.md) + * [Mustache](m/Mustache.md) * [MView](m/MView.md) - * [mxml](m/mxml.md) - * [mxmlplus](m/mxmlplus.md) * [MXNet](m/MXNet.md) - * [MyCC](m/MyCC.md) * [mygene](m/mygene.md) - * [MyMediaLite](m/MyMediaLite.md) - * [mympingpong](m/mympingpong.md) * [Myokit](m/Myokit.md) - * [mypy](m/mypy.md) - * [MySQL](m/MySQL.md) - * [MySQL-python](m/MySQL-python.md) - * [mysqlclient](m/mysqlclient.md) * [n](n/index.md) * [n2v](n/n2v.md) * [NAG](n/NAG.md) @@ -2120,17 +1631,15 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [nano](n/nano.md) * [NanoCaller](n/NanoCaller.md) * [NanoComp](n/NanoComp.md) - * [nanocompore](n/nanocompore.md) * [NanoFilt](n/NanoFilt.md) * [nanoflann](n/nanoflann.md) * [nanoget](n/nanoget.md) * [NanoLyse](n/NanoLyse.md) * [nanomath](n/nanomath.md) * [nanomax-analysis-utils](n/nanomax-analysis-utils.md) - * [nanonet](n/nanonet.md) + * [NanoPack](n/NanoPack.md) * [NanoPlot](n/NanoPlot.md) * [nanopolish](n/nanopolish.md) - * [NanopolishComp](n/NanopolishComp.md) * [nanoQC](n/nanoQC.md) * [NanoStat](n/NanoStat.md) * [napari](n/napari.md) @@ -2139,7 +1648,6 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [nauty](n/nauty.md) * [nbclassic](n/nbclassic.md) * [NBO](n/NBO.md) - * [NCBI-Toolkit](n/NCBI-Toolkit.md) * [ncbi-vdb](n/ncbi-vdb.md) * [NCCL](n/NCCL.md) * [NCCL-tests](n/NCCL-tests.md) @@ -2149,43 +1657,30 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [NCL](n/NCL.md) * [NCO](n/NCO.md) * [ncolor](n/ncolor.md) - * [ncompress](n/ncompress.md) * [ncurses](n/ncurses.md) * [ncview](n/ncview.md) - * [nd2reader](n/nd2reader.md) - * [ne](n/ne.md) * [NECAT](n/NECAT.md) * [NECI](n/NECI.md) - * [NEdit](n/NEdit.md) - * [Nek5000](n/Nek5000.md) * [Nektar++](n/Nektar++.md) * [nellie](n/nellie.md) - * [neon](n/neon.md) * [neptune-client](n/neptune-client.md) - * [Net-core](n/Net-core.md) * [netCDF](n/netCDF.md) - * [netCDF-C++](n/netCDF-C++.md) * [netCDF-C++4](n/netCDF-C++4.md) * [netCDF-Fortran](n/netCDF-Fortran.md) * [netcdf4-python](n/netcdf4-python.md) - * [netloc](n/netloc.md) + * [netket](n/netket.md) * [NetLogo](n/NetLogo.md) - * [netMHC](n/netMHC.md) * [netMHCII](n/netMHCII.md) - * [netMHCIIpan](n/netMHCIIpan.md) - * [netMHCpan](n/netMHCpan.md) * [NetPIPE](n/NetPIPE.md) * [NetPyNE](n/NetPyNE.md) * [nettle](n/nettle.md) - * [networkTools](n/networkTools.md) * [networkx](n/networkx.md) - * [NeuroKit](n/NeuroKit.md) * [NEURON](n/NEURON.md) * [NewHybrids](n/NewHybrids.md) + * [NextDenovo](n/NextDenovo.md) * [Nextflow](n/Nextflow.md) * [NextGenMap](n/NextGenMap.md) * [NextPolish](n/NextPolish.md) - * [NEXUS-CL](n/NEXUS-CL.md) * [nf-core](n/nf-core.md) * [nf-core-mag](n/nf-core-mag.md) * [NFFT](n/NFFT.md) @@ -2193,46 +1688,33 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [nghttp3](n/nghttp3.md) * [NGLess](n/NGLess.md) * [nglview](n/nglview.md) + * [ngmlr](n/ngmlr.md) * [NGS](n/NGS.md) - * [NGS-Python](n/NGS-Python.md) - * [NGSadmix](n/NGSadmix.md) * [NGSpeciesID](n/NGSpeciesID.md) * [ngspice](n/ngspice.md) * [ngtcp2](n/ngtcp2.md) * [NiBabel](n/NiBabel.md) * [nichenetr](n/nichenetr.md) - * [NIfTI](n/NIfTI.md) - * [nifti2dicom](n/nifti2dicom.md) * [nifty](n/nifty.md) * [Nilearn](n/Nilearn.md) * [Nim](n/Nim.md) - * [NIMBLE](n/NIMBLE.md) * [Ninja](n/Ninja.md) * [Nipype](n/Nipype.md) - * [NLMpy](n/NLMpy.md) * [nlohmann_json](n/nlohmann_json.md) * [NLopt](n/NLopt.md) * [NLTK](n/NLTK.md) * [nnU-Net](n/nnU-Net.md) - * [Node-RED](n/Node-RED.md) * [nodejs](n/nodejs.md) * [noise](n/noise.md) * [Normaliz](n/Normaliz.md) - * [nose-parameterized](n/nose-parameterized.md) * [nose3](n/nose3.md) * [novaSTA](n/novaSTA.md) - * [novoalign](n/novoalign.md) - * [NOVOPlasty](n/NOVOPlasty.md) - * [npstat](n/npstat.md) - * [NRGLjubljana](n/NRGLjubljana.md) * [Nsight-Compute](n/Nsight-Compute.md) * [Nsight-Systems](n/Nsight-Systems.md) * [NSPR](n/NSPR.md) * [NSS](n/NSS.md) * [nsync](n/nsync.md) * [ntCard](n/ntCard.md) - * [ntEdit](n/ntEdit.md) - * [ntHits](n/ntHits.md) * [NTL](n/NTL.md) * [NTPoly](n/NTPoly.md) * [num2words](n/num2words.md) @@ -2241,6 +1723,7 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [numdiff](n/numdiff.md) * [numexpr](n/numexpr.md) * [numpy](n/numpy.md) + * [numpydoc](n/numpydoc.md) * [NVHPC](n/NVHPC.md) * [nvitop](n/nvitop.md) * [nvofbf](n/nvofbf.md) @@ -2248,44 +1731,39 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [NVSHMEM](n/NVSHMEM.md) * [nvtop](n/nvtop.md) * [NWChem](n/NWChem.md) - * [NxTrim](n/NxTrim.md) * [o](o/index.md) * [Oases](o/Oases.md) - * [OBITools](o/OBITools.md) * [OBITools3](o/OBITools3.md) * [OCaml](o/OCaml.md) * [ocamlbuild](o/ocamlbuild.md) * [occt](o/occt.md) * [oceanspy](o/oceanspy.md) - * [OCNet](o/OCNet.md) * [Octave](o/Octave.md) * [Octopus-vcf](o/Octopus-vcf.md) * [OGDF](o/OGDF.md) * [olaFlow](o/olaFlow.md) * [olego](o/olego.md) - * [OMA](o/OMA.md) + * [ollama](o/ollama.md) * [ome-types](o/ome-types.md) * [OmegaFold](o/OmegaFold.md) * [OMERO.insight](o/OMERO.insight.md) * [OMERO.py](o/OMERO.py.md) * [Omnipose](o/Omnipose.md) + * [omp](o/omp.md) * [onedrive](o/onedrive.md) * [ONNX](o/ONNX.md) * [ONNX-Runtime](o/ONNX-Runtime.md) * [ont-fast5-api](o/ont-fast5-api.md) * [ont-guppy](o/ont-guppy.md) * [ont-remora](o/ont-remora.md) - * [OOMPA](o/OOMPA.md) * [OPARI2](o/OPARI2.md) - * [Open-Data-Cube-Core](o/Open-Data-Cube-Core.md) + * [OPEN-SURFEX](o/OPEN-SURFEX.md) * [OpenAI-Gym](o/OpenAI-Gym.md) * [openai-python](o/openai-python.md) * [OpenBabel](o/OpenBabel.md) * [OpenBLAS](o/OpenBLAS.md) * [openCARP](o/openCARP.md) * [OpenCensus-python](o/OpenCensus-python.md) - * [OpenCoarrays](o/OpenCoarrays.md) - * [OpenColorIO](o/OpenColorIO.md) * [OpenCV](o/OpenCV.md) * [OpenEXR](o/OpenEXR.md) * [OpenFace](o/OpenFace.md) @@ -2293,79 +1771,66 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [OpenFOAM](o/OpenFOAM.md) * [OpenFOAM-Extend](o/OpenFOAM-Extend.md) * [OpenFold](o/OpenFold.md) - * [OpenForceField](o/OpenForceField.md) * [OpenForceField-Toolkit](o/OpenForceField-Toolkit.md) * [OpenImageIO](o/OpenImageIO.md) * [OpenJPEG](o/OpenJPEG.md) - * [OpenKIM-API](o/OpenKIM-API.md) * [openkim-models](o/openkim-models.md) * [OpenMEEG](o/OpenMEEG.md) * [OpenMM](o/OpenMM.md) - * [OpenMM-PLUMED](o/OpenMM-PLUMED.md) + * [OpenMM-Torch](o/OpenMM-Torch.md) * [OpenMMTools](o/OpenMMTools.md) * [OpenMolcas](o/OpenMolcas.md) * [OpenMPI](o/OpenMPI.md) - * [OpenMS](o/OpenMS.md) - * [OpenNLP](o/OpenNLP.md) + * [OpenNMT-py](o/OpenNMT-py.md) * [OpenPGM](o/OpenPGM.md) - * [OpenPIV](o/OpenPIV.md) * [openpyxl](o/openpyxl.md) * [OpenRefine](o/OpenRefine.md) * [OpenSceneGraph](o/OpenSceneGraph.md) - * [OpenSees](o/OpenSees.md) * [OpenSlide](o/OpenSlide.md) * [OpenSlide-Java](o/OpenSlide-Java.md) * [openslide-python](o/openslide-python.md) * [OpenSSL](o/OpenSSL.md) * [OpenStackClient](o/OpenStackClient.md) - * [OPERA](o/OPERA.md) * [OPERA-MS](o/OPERA-MS.md) * [OptaDOS](o/OptaDOS.md) * [Optax](o/Optax.md) * [optiSLang](o/optiSLang.md) - * [OptiType](o/OptiType.md) * [OptiX](o/OptiX.md) + * [optree](o/optree.md) * [Optuna](o/Optuna.md) - * [OR-Tools](o/OR-Tools.md) * [ORCA](o/ORCA.md) - * [ORFfinder](o/ORFfinder.md) * [OrfM](o/OrfM.md) * [orjson](o/orjson.md) * [orthAgogue](o/orthAgogue.md) * [OrthoFinder](o/OrthoFinder.md) - * [OrthoMCL](o/OrthoMCL.md) * [Osi](o/Osi.md) * [OSPRay](o/OSPRay.md) * [OSU-Micro-Benchmarks](o/OSU-Micro-Benchmarks.md) * [OTF2](o/OTF2.md) * [OVITO](o/OVITO.md) - * [ownCloud](o/ownCloud.md) * [oxDNA](o/oxDNA.md) - * [oxford_asl](o/oxford_asl.md) * [p](p/index.md) * [p11-kit](p/p11-kit.md) - * [p4-phylogenetics](p/p4-phylogenetics.md) * [p4est](p/p4est.md) - * [p4vasp](p/p4vasp.md) * [p7zip](p/p7zip.md) * [packmol](p/packmol.md) * [PAGAN2](p/PAGAN2.md) * [pagmo](p/pagmo.md) * [pairsnp](p/pairsnp.md) + * [pairtools](p/pairtools.md) * [PAL2NAL](p/PAL2NAL.md) * [paladin](p/paladin.md) * [PALEOMIX](p/PALEOMIX.md) + * [PALM](p/PALM.md) * [PAML](p/PAML.md) * [panaroo](p/panaroo.md) * [pandapower](p/pandapower.md) - * [pandas](p/pandas.md) - * [pandas-datareader](p/pandas-datareader.md) - * [PANDAseq](p/PANDAseq.md) * [Pandoc](p/Pandoc.md) * [Panedr](p/Panedr.md) * [Pango](p/Pango.md) * [pangolin](p/pangolin.md) * [panito](p/panito.md) + * [Panoply](p/Panoply.md) * [PAPI](p/PAPI.md) * [parallel](p/parallel.md) * [parallel-fastq-dump](p/parallel-fastq-dump.md) @@ -2378,36 +1843,28 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [ParaView](p/ParaView.md) * [Parcels](p/Parcels.md) * [PARI-GP](p/PARI-GP.md) - * [ParmEd](p/ParmEd.md) * [ParMETIS](p/ParMETIS.md) * [ParMGridGen](p/ParMGridGen.md) * [Parsl](p/Parsl.md) + * [Parsnp](p/Parsnp.md) * [PartitionFinder](p/PartitionFinder.md) * [PASA](p/PASA.md) - * [pasta](p/pasta.md) * [PaStiX](p/PaStiX.md) * [pastml](p/pastml.md) * [patch](p/patch.md) * [patchelf](p/patchelf.md) - * [path.py](p/path.py.md) + * [pathos](p/pathos.md) * [PAUP](p/PAUP.md) * [pauvre](p/pauvre.md) - * [pbbam](p/pbbam.md) - * [pbcopper](p/pbcopper.md) - * [pbdagcon](p/pbdagcon.md) * [pbipa](p/pbipa.md) * [pblat](p/pblat.md) - * [pbmm2](p/pbmm2.md) - * [pbs_python](p/pbs_python.md) - * [PBSuite](p/PBSuite.md) * [PBZIP2](p/PBZIP2.md) * [PCAngsd](p/PCAngsd.md) - * [PCC](p/PCC.md) * [PCL](p/PCL.md) * [PCMSolver](p/PCMSolver.md) - * [PCRaster](p/PCRaster.md) * [PCRE](p/PCRE.md) * [PCRE2](p/PCRE2.md) + * [PDAL](p/PDAL.md) * [pdf2docx](p/pdf2docx.md) * [PDM](p/PDM.md) * [pdsh](p/pdsh.md) @@ -2415,15 +1872,11 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [peakdetect](p/peakdetect.md) * [PEAR](p/PEAR.md) * [PEcAn](p/PEcAn.md) - * [PennCNV](p/PennCNV.md) + * [PennyLane](p/PennyLane.md) * [PEPT](p/PEPT.md) - * [Percolator](p/Percolator.md) * [Perl](p/Perl.md) - * [perl-app-cpanminus](p/perl-app-cpanminus.md) * [Perl-bundle-CPAN](p/Perl-bundle-CPAN.md) - * [Perl4-CoreLibs](p/Perl4-CoreLibs.md) * [Perseus](p/Perseus.md) - * [PEST++](p/PEST++.md) * [PETSc](p/PETSc.md) * [petsc4py](p/petsc4py.md) * [PfamScan](p/PfamScan.md) @@ -2431,29 +1884,20 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [pfind](p/pfind.md) * [pftoolsV3](p/pftoolsV3.md) * [pFUnit](p/pFUnit.md) - * [PGDSpider](p/PGDSpider.md) - * [PGI](p/PGI.md) * [PGPLOT](p/PGPLOT.md) - * [PHANOTATE](p/PHANOTATE.md) * [Phantompeakqualtools](p/Phantompeakqualtools.md) - * [PHASE](p/PHASE.md) * [phasius](p/phasius.md) - * [PHAST](p/PHAST.md) * [Phenoflow](p/Phenoflow.md) - * [PheWAS](p/PheWAS.md) - * [PheWeb](p/PheWeb.md) * [Philosopher](p/Philosopher.md) * [PhiPack](p/PhiPack.md) - * [PHLAT](p/PHLAT.md) * [phonemizer](p/phonemizer.md) * [phono3py](p/phono3py.md) * [phonopy](p/phonopy.md) + * [Phonopy-Spectroscopy](p/Phonopy-Spectroscopy.md) * [photontorch](p/photontorch.md) * [phototonic](p/phototonic.md) * [PHYLIP](p/PHYLIP.md) - * [PhyloBayes-MPI](p/PhyloBayes-MPI.md) - * [phylokit](p/phylokit.md) - * [phylonaut](p/phylonaut.md) + * [phylo-treetime](p/phylo-treetime.md) * [PhyloPhlAn](p/PhyloPhlAn.md) * [phyluce](p/phyluce.md) * [PhyML](p/PhyML.md) @@ -2462,50 +1906,29 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [PICI-LIGGGHTS](p/PICI-LIGGGHTS.md) * [PICRUSt2](p/PICRUSt2.md) * [pigz](p/pigz.md) - * [PIL](p/PIL.md) - * [PileOMeth](p/PileOMeth.md) * [Pillow](p/Pillow.md) * [Pillow-SIMD](p/Pillow-SIMD.md) * [Pilon](p/Pilon.md) - * [PIMS](p/PIMS.md) * [Pindel](p/Pindel.md) - * [Pingouin](p/Pingouin.md) * [Pint](p/Pint.md) - * [pip](p/pip.md) * [PIPITS](p/PIPITS.md) * [PIRATE](p/PIRATE.md) - * [pIRS](p/pIRS.md) - * [Pisces](p/Pisces.md) - * [piSvM](p/piSvM.md) - * [piSvM-JSC](p/piSvM-JSC.md) * [pixman](p/pixman.md) - * [pizzly](p/pizzly.md) * [pkg-config](p/pkg-config.md) * [pkgconf](p/pkgconf.md) * [pkgconfig](p/pkgconfig.md) * [PLAMS](p/PLAMS.md) * [planarity](p/planarity.md) - * [plantcv](p/plantcv.md) * [plantri](p/plantri.md) - * [PlaScope](p/PlaScope.md) - * [PlasmaPy](p/PlasmaPy.md) - * [PLAST](p/PLAST.md) - * [Platanus](p/Platanus.md) - * [Platypus](p/Platypus.md) * [Platypus-Opt](p/Platypus-Opt.md) * [plc](p/plc.md) * [PLINK](p/PLINK.md) * [plinkliftover](p/plinkliftover.md) - * [plinkQC](p/plinkQC.md) - * [PLINKSEQ](p/PLINKSEQ.md) * [plmc](p/plmc.md) * [plot1cell](p/plot1cell.md) - * [Ploticus](p/Ploticus.md) - * [plotly](p/plotly.md) * [plotly-orca](p/plotly-orca.md) * [plotly.py](p/plotly.py.md) * [plotutils](p/plotutils.md) - * [PLplot](p/PLplot.md) * [PLUMED](p/PLUMED.md) * [PLY](p/PLY.md) * [PMIx](p/PMIx.md) @@ -2517,31 +1940,25 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [poetry](p/poetry.md) * [polars](p/polars.md) * [polymake](p/polymake.md) - * [pomkl](p/pomkl.md) - * [pompi](p/pompi.md) + * [PoPoolation-TE2](p/PoPoolation-TE2.md) * [poppler](p/poppler.md) * [poppunk](p/poppunk.md) * [popscle](p/popscle.md) * [popt](p/popt.md) * [Porechop](p/Porechop.md) - * [porefoam](p/porefoam.md) - * [poretools](p/poretools.md) * [PortAudio](p/PortAudio.md) - * [Portcullis](p/Portcullis.md) * [PortMidi](p/PortMidi.md) - * [Postgres-XL](p/Postgres-XL.md) * [PostgreSQL](p/PostgreSQL.md) * [POT](p/POT.md) * [POV-Ray](p/POV-Ray.md) * [powerlaw](p/powerlaw.md) * [pp-sketchlib](p/pp-sketchlib.md) * [PPanGGOLiN](p/PPanGGOLiN.md) - * [PPfold](p/PPfold.md) * [ppl](p/ppl.md) * [pplacer](p/pplacer.md) * [pplpy](p/pplpy.md) * [PRANK](p/PRANK.md) - * [PRC](p/PRC.md) + * [pre-commit](p/pre-commit.md) * [preCICE](p/preCICE.md) * [premailer](p/premailer.md) * [PREQUAL](p/PREQUAL.md) @@ -2551,63 +1968,43 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [pretty-yaml](p/pretty-yaml.md) * [primecount](p/primecount.md) * [primecountpy](p/primecountpy.md) - * [Primer3](p/Primer3.md) * [PRINSEQ](p/PRINSEQ.md) - * [printproto](p/printproto.md) * [PRISMS-PF](p/PRISMS-PF.md) - * [ProbABEL](p/ProbABEL.md) * [ProBiS](p/ProBiS.md) * [prodigal](p/prodigal.md) * [ProFit](p/ProFit.md) * [PROJ](p/PROJ.md) - * [ProjectQ](p/ProjectQ.md) * [prokka](p/prokka.md) * [prompt-toolkit](p/prompt-toolkit.md) - * [proovread](p/proovread.md) - * [propy](p/propy.md) * [ProteinMPNN](p/ProteinMPNN.md) * [Proteinortho](p/Proteinortho.md) - * [ProtHint](p/ProtHint.md) * [protobuf](p/protobuf.md) * [protobuf-python](p/protobuf-python.md) - * [protozero](p/protozero.md) * [PRRTE](p/PRRTE.md) * [PRSice](p/PRSice.md) * [PSASS](p/PSASS.md) - * [pscom](p/pscom.md) - * [PSI](p/PSI.md) * [PSI4](p/PSI4.md) * [PsiCLASS](p/PsiCLASS.md) * [PSIPRED](p/PSIPRED.md) * [PSM2](p/PSM2.md) * [psmc](p/psmc.md) - * [psmpi](p/psmpi.md) - * [psmpi2](p/psmpi2.md) * [PSolver](p/PSolver.md) - * [PSORTb](p/PSORTb.md) - * [psrecord](p/psrecord.md) * [pstoedit](p/pstoedit.md) * [psutil](p/psutil.md) * [psycopg](p/psycopg.md) * [psycopg2](p/psycopg2.md) - * [ptemcee](p/ptemcee.md) - * [PTESFinder](p/PTESFinder.md) - * [pubtcrs](p/pubtcrs.md) * [pugixml](p/pugixml.md) * [pullseq](p/pullseq.md) * [PuLP](p/PuLP.md) * [purge_dups](p/purge_dups.md) * [pv](p/pv.md) - * [py](p/py.md) * [py-aiger](p/py-aiger.md) - * [py-aiger-bdd](p/py-aiger-bdd.md) * [py-c3d](p/py-c3d.md) * [py-cpuinfo](p/py-cpuinfo.md) * [py3Dmol](p/py3Dmol.md) - * [pyABC](p/pyABC.md) * [PyAEDT](p/PyAEDT.md) * [PyAMG](p/PyAMG.md) - * [PyAPS3](p/PyAPS3.md) + * [pyannote.audio](p/pyannote.audio.md) * [PyAV](p/PyAV.md) * [pybedtools](p/pybedtools.md) * [PyBEL](p/PyBEL.md) @@ -2615,6 +2012,7 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [pyBigWig](p/pyBigWig.md) * [pybind11](p/pybind11.md) * [pybind11-stubgen](p/pybind11-stubgen.md) + * [pybind11_abseil](p/pybind11_abseil.md) * [pybinding](p/pybinding.md) * [PyBioLib](p/PyBioLib.md) * [PyBullet](p/PyBullet.md) @@ -2623,72 +2021,48 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [pyccel](p/pyccel.md) * [PyCharm](p/PyCharm.md) * [PyCheMPS2](p/PyCheMPS2.md) - * [Pychopper](p/Pychopper.md) - * [PyCifRW](p/PyCifRW.md) * [PyClone](p/PyClone.md) - * [pycma](p/pycma.md) * [pycocotools](p/pycocotools.md) * [pycodestyle](p/pycodestyle.md) - * [PyCogent](p/PyCogent.md) * [pycoQC](p/pycoQC.md) * [pycubescd](p/pycubescd.md) * [PyCUDA](p/PyCUDA.md) * [PycURL](p/PycURL.md) * [PyDamage](p/PyDamage.md) * [pydantic](p/pydantic.md) - * [PyDatastream](p/PyDatastream.md) * [pydicom](p/pydicom.md) * [pydicom-seg](p/pydicom-seg.md) - * [pydlpoly](p/pydlpoly.md) * [pydot](p/pydot.md) * [pyEGA3](p/pyEGA3.md) - * [pyenchant](p/pyenchant.md) * [PyEVTK](p/PyEVTK.md) * [PyEXR](p/PyEXR.md) * [pyFAI](p/pyFAI.md) * [pyfaidx](p/pyfaidx.md) * [pyfasta](p/pyfasta.md) - * [PyFFmpeg](p/PyFFmpeg.md) * [pyFFTW](p/pyFFTW.md) - * [pyfits](p/pyfits.md) - * [PyFMI](p/PyFMI.md) * [PyFoam](p/PyFoam.md) - * [PyFR](p/PyFR.md) * [PyFrag](p/PyFrag.md) * [pyGAM](p/pyGAM.md) * [pygame](p/pygame.md) - * [pygccxml](p/pygccxml.md) * [pyGenomeTracks](p/pyGenomeTracks.md) * [PyGEOS](p/PyGEOS.md) - * [pyGIMLi](p/pyGIMLi.md) * [Pygments](p/Pygments.md) * [pygmo](p/pygmo.md) * [PyGObject](p/PyGObject.md) * [pygraphviz](p/pygraphviz.md) - * [pygrib](p/pygrib.md) - * [PyGTK](p/PyGTK.md) - * [PyGTS](p/PyGTS.md) - * [PyGWAS](p/PyGWAS.md) - * [pyhdf](p/pyhdf.md) * [PyHMMER](p/PyHMMER.md) * [PyImageJ](p/PyImageJ.md) * [PyInstaller](p/PyInstaller.md) * [pyiron](p/pyiron.md) - * [Pyke3](p/Pyke3.md) - * [pylift](p/pylift.md) * [Pylint](p/Pylint.md) * [pylipid](p/pylipid.md) * [pyMannKendall](p/pyMannKendall.md) * [pymatgen](p/pymatgen.md) - * [pymatgen-db](p/pymatgen-db.md) - * [pymbar](p/pymbar.md) * [pyMBE](p/pyMBE.md) * [PyMC](p/PyMC.md) * [PyMC3](p/PyMC3.md) * [pymca](p/pymca.md) - * [pymemcache](p/pymemcache.md) * [PyMOL](p/PyMOL.md) - * [PyNAST](p/PyNAST.md) * [pyobjcryst](p/pyobjcryst.md) * [PyOD](p/PyOD.md) * [pyodbc](p/pyodbc.md) @@ -2697,29 +2071,23 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [PyOpenGL](p/PyOpenGL.md) * [pyparsing](p/pyparsing.md) * [pyperf](p/pyperf.md) - * [pyplusplus](p/pyplusplus.md) * [pypmt](p/pypmt.md) * [PYPOWER](p/PYPOWER.md) * [pyproj](p/pyproj.md) * [PyPSA](p/PyPSA.md) * [PyPy](p/PyPy.md) * [pyqstem](p/pyqstem.md) - * [PyQt](p/PyQt.md) * [PyQt-builder](p/PyQt-builder.md) * [PyQt5](p/PyQt5.md) * [PyQtGraph](p/PyQtGraph.md) * [pyradiomics](p/pyradiomics.md) - * [PyRe](p/PyRe.md) * [PyRETIS](p/PyRETIS.md) - * [pyringe](p/pyringe.md) * [pyro-api](p/pyro-api.md) * [pyro-ppl](p/pyro-ppl.md) - * [Pyro4](p/Pyro4.md) * [PyRosetta](p/PyRosetta.md) * [Pysam](p/Pysam.md) * [pysamstats](p/pysamstats.md) * [PySAT](p/PySAT.md) - * [pyScaf](p/pyScaf.md) * [pySCENIC](p/pySCENIC.md) * [PySCF](p/PySCF.md) * [pyseer](p/pyseer.md) @@ -2728,14 +2096,10 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [PySide2](p/PySide2.md) * [PySINDy](p/PySINDy.md) * [pyslim](p/pyslim.md) - * [pysndfx](p/pysndfx.md) - * [Pysolar](p/Pysolar.md) * [pyspoa](p/pyspoa.md) - * [pysqlite](p/pysqlite.md) * [PyStan](p/PyStan.md) * [pystencils](p/pystencils.md) * [pysteps](p/pysteps.md) - * [pystran](p/pystran.md) * [PyTables](p/PyTables.md) * [PyTensor](p/PyTensor.md) * [pytesseract](p/pytesseract.md) @@ -2756,19 +2120,19 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [python-casacore](p/python-casacore.md) * [python-docx](p/python-docx.md) * [python-elf](p/python-elf.md) - * [python-hl7](p/python-hl7.md) * [python-igraph](p/python-igraph.md) * [python-irodsclient](p/python-irodsclient.md) * [python-isal](p/python-isal.md) * [python-Levenshtein](p/python-Levenshtein.md) * [python-libsbml](p/python-libsbml.md) * [python-louvain](p/python-louvain.md) + * [python-lsp-server](p/python-lsp-server.md) * [python-mujoco](p/python-mujoco.md) * [python-parasail](p/python-parasail.md) + * [python-slugify](p/python-slugify.md) * [python-telegram-bot](p/python-telegram-bot.md) - * [python-weka-wrapper3](p/python-weka-wrapper3.md) * [python-xxhash](p/python-xxhash.md) - * [pythran](p/pythran.md) + * [python-zlib-ng](p/python-zlib-ng.md) * [PyTorch](p/PyTorch.md) * [pytorch-3dunet](p/pytorch-3dunet.md) * [PyTorch-bundle](p/PyTorch-bundle.md) @@ -2779,8 +2143,8 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [PyTorch-Lightning](p/PyTorch-Lightning.md) * [PyTorch3D](p/PyTorch3D.md) * [PyTorchVideo](p/PyTorchVideo.md) - * [PyVCF](p/PyVCF.md) * [PyVCF3](p/PyVCF3.md) + * [pyvips](p/pyvips.md) * [PyVista](p/PyVista.md) * [pyWannier90](p/pyWannier90.md) * [PyWavelets](p/PyWavelets.md) @@ -2790,49 +2154,37 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [PyZMQ](p/PyZMQ.md) * [q](q/index.md) * [q2-krona](q/q2-krona.md) - * [Q6](q/Q6.md) * [QCA](q/QCA.md) * [qcat](q/qcat.md) * [QCG-PilotJob](q/QCG-PilotJob.md) - * [qcint](q/qcint.md) * [QCxMS](q/QCxMS.md) * [QD](q/QD.md) - * [QDD](q/QDD.md) - * [QEMU](q/QEMU.md) * [qforce](q/qforce.md) * [QGIS](q/QGIS.md) * [Qhull](q/Qhull.md) - * [QIIME](q/QIIME.md) * [QIIME2](q/QIIME2.md) * [Qiskit](q/Qiskit.md) * [QJson](q/QJson.md) * [qmflows](q/qmflows.md) - * [QML](q/QML.md) * [qnorm](q/qnorm.md) - * [qpth](q/qpth.md) * [qrupdate](q/qrupdate.md) * [QScintilla](q/QScintilla.md) - * [Qt](q/Qt.md) * [Qt5](q/Qt5.md) * [Qt5Webkit](q/Qt5Webkit.md) * [Qt6](q/Qt6.md) * [Qtconsole](q/Qtconsole.md) * [QtKeychain](q/QtKeychain.md) * [QTLtools](q/QTLtools.md) - * [qtop](q/qtop.md) * [QtPy](q/QtPy.md) * [Qualimap](q/Qualimap.md) * [Quandl](q/Quandl.md) * [QuantumESPRESSO](q/QuantumESPRESSO.md) + * [quarto](q/quarto.md) * [QUAST](q/QUAST.md) - * [QuaZIP](q/QuaZIP.md) * [QuickFF](q/QuickFF.md) * [QuickPIC](q/QuickPIC.md) * [QuickTree](q/QuickTree.md) - * [Quip](q/Quip.md) - * [Quorum](q/Quorum.md) * [QuPath](q/QuPath.md) - * [QuTiP](q/QuTiP.md) * [Qwt](q/Qwt.md) * [QwtPolar](q/QwtPolar.md) * [r](r/index.md) @@ -2842,27 +2194,21 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [R-INLA](r/R-INLA.md) * [R-keras](r/R-keras.md) * [R-MXM](r/R-MXM.md) - * [R-opencv](r/R-opencv.md) * [R-tesseract](r/R-tesseract.md) * [R-transport](r/R-transport.md) * [R2jags](r/R2jags.md) * [Racon](r/Racon.md) * [radeontop](r/radeontop.md) * [radian](r/radian.md) - * [RaGOO](r/RaGOO.md) * [Ragout](r/Ragout.md) * [RagTag](r/RagTag.md) * [rampart](r/rampart.md) - * [randfold](r/randfold.md) - * [randrproto](r/randrproto.md) * [rankwidth](r/rankwidth.md) * [rapidcsv](r/rapidcsv.md) * [RapidJSON](r/RapidJSON.md) * [rapidNJ](r/rapidNJ.md) - * [rapidtide](r/rapidtide.md) - * [RAPSearch2](r/RAPSearch2.md) + * [RAPIDS](r/RAPIDS.md) * [Raptor](r/Raptor.md) - * [Rascaf](r/Rascaf.md) * [RASPA2](r/RASPA2.md) * [Rasqal](r/Rasqal.md) * [rasterio](r/rasterio.md) @@ -2871,61 +2217,46 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [Raven](r/Raven.md) * [RAxML](r/RAxML.md) * [RAxML-NG](r/RAxML-NG.md) - * [Ray-assembler](r/Ray-assembler.md) * [Ray-project](r/Ray-project.md) * [Raysect](r/Raysect.md) - * [RBFOpt](r/RBFOpt.md) * [RCall](r/RCall.md) * [rclone](r/rclone.md) - * [Rcorrector](r/Rcorrector.md) * [RcppGSL](r/RcppGSL.md) - * [rCUDA](r/rCUDA.md) * [RDFlib](r/RDFlib.md) * [RDKit](r/RDKit.md) + * [rDock](r/rDock.md) * [RDP-Classifier](r/RDP-Classifier.md) * [RE2](r/RE2.md) * [re2c](r/re2c.md) - * [Reads2snp](r/Reads2snp.md) - * [Reapr](r/Reapr.md) + * [read2tree](r/read2tree.md) * [ReaxFF](r/ReaxFF.md) * [RECON](r/RECON.md) - * [Red](r/Red.md) * [Redis](r/Redis.md) * [redis-py](r/redis-py.md) * [Redland](r/Redland.md) - * [Redundans](r/Redundans.md) * [ReFrame](r/ReFrame.md) * [Regenie](r/Regenie.md) * [regionmask](r/regionmask.md) * [RegTools](r/RegTools.md) * [Relate](r/Relate.md) - * [RELION](r/RELION.md) * [remake](r/remake.md) - * [ReMatCh](r/ReMatCh.md) - * [REMORA](r/REMORA.md) - * [renderproto](r/renderproto.md) - * [RepastHPC](r/RepastHPC.md) * [RepeatMasker](r/RepeatMasker.md) * [RepeatModeler](r/RepeatModeler.md) * [RepeatScout](r/RepeatScout.md) * [request](r/request.md) - * [requests](r/requests.md) - * [RERconverge](r/RERconverge.md) * [ResistanceGA](r/ResistanceGA.md) * [resolos](r/resolos.md) * [Restrander](r/Restrander.md) * [rethinking](r/rethinking.md) * [retworkx](r/retworkx.md) * [RevBayes](r/RevBayes.md) + * [REViewer](r/REViewer.md) * [RFdiffusion](r/RFdiffusion.md) * [rgdal](r/rgdal.md) * [rgeos](r/rgeos.md) * [Rgurobi](r/Rgurobi.md) - * [rhdf5](r/rhdf5.md) * [RHEIA](r/RHEIA.md) - * [RheoTool](r/RheoTool.md) * [Rhodium](r/Rhodium.md) - * [rickflow](r/rickflow.md) * [RInChI](r/RInChI.md) * [rioxarray](r/rioxarray.md) * [ripunzip](r/ripunzip.md) @@ -2940,13 +2271,8 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [RMBlast](r/RMBlast.md) * [RNA-Bloom](r/RNA-Bloom.md) * [RNA-SeQC](r/RNA-SeQC.md) - * [RNAclust](r/RNAclust.md) - * [RNAcode](r/RNAcode.md) - * [RNAIndel](r/RNAIndel.md) - * [RNAmmer](r/RNAmmer.md) * [rnamotif](r/rnamotif.md) * [rnaQUAST](r/rnaQUAST.md) - * [RNAz](r/RNAz.md) * [RnBeads](r/RnBeads.md) * [Roary](r/Roary.md) * [ROCm](r/ROCm.md) @@ -2956,52 +2282,35 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [rocminfo](r/rocminfo.md) * [ROCR-Runtime](r/ROCR-Runtime.md) * [ROCT-Thunk-Interface](r/ROCT-Thunk-Interface.md) - * [ROI_PAC](r/ROI_PAC.md) - * [ROME](r/ROME.md) * [ROOT](r/ROOT.md) - * [root_numpy](r/root_numpy.md) - * [rootpy](r/rootpy.md) - * [Rosetta](r/Rosetta.md) * [rpmrebuild](r/rpmrebuild.md) * [RPostgreSQL](r/RPostgreSQL.md) * [rpy2](r/rpy2.md) - * [RQGIS3](r/RQGIS3.md) * [RSEM](r/RSEM.md) * [RSeQC](r/RSeQC.md) - * [RStan](r/RStan.md) - * [rstanarm](r/rstanarm.md) * [RStudio-Server](r/RStudio-Server.md) * [RTG-Tools](r/RTG-Tools.md) * [Rtree](r/Rtree.md) * [ruamel.yaml](r/ruamel.yaml.md) * [Ruby](r/Ruby.md) - * [Ruby-Tk](r/Ruby-Tk.md) * [ruffus](r/ruffus.md) * [ruptures](r/ruptures.md) * [Rust](r/Rust.md) * [rustworkx](r/rustworkx.md) * [s](s/index.md) - * [S-Lang](s/S-Lang.md) * [s3fs](s/s3fs.md) - * [S4](s/S4.md) * [Sabre](s/Sabre.md) * [safestringlib](s/safestringlib.md) * [Safetensors](s/Safetensors.md) - * [SAGE](s/SAGE.md) * [Sagemath](s/Sagemath.md) - * [Sailfish](s/Sailfish.md) - * [SALib](s/SALib.md) * [Salmon](s/Salmon.md) - * [SALMON-TDDFT](s/SALMON-TDDFT.md) * [Sambamba](s/Sambamba.md) * [samblaster](s/samblaster.md) - * [Samcef](s/Samcef.md) * [samclip](s/samclip.md) * [samplot](s/samplot.md) * [SAMtools](s/SAMtools.md) * [sansa](s/sansa.md) * [SAP](s/SAP.md) - * [SAS](s/SAS.md) * [Satsuma2](s/Satsuma2.md) * [savvy](s/savvy.md) * [Saxon-HE](s/Saxon-HE.md) @@ -3010,7 +2319,6 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [ScaFaCoS](s/ScaFaCoS.md) * [ScaLAPACK](s/ScaLAPACK.md) * [Scalasca](s/Scalasca.md) - * [SCALCE](s/SCALCE.md) * [Scalene](s/Scalene.md) * [scanpy](s/scanpy.md) * [scArches](s/scArches.md) @@ -3025,82 +2333,62 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [scGSVA](s/scGSVA.md) * [scHiCExplorer](s/scHiCExplorer.md) * [Schrodinger](s/Schrodinger.md) + * [SciANN](s/SciANN.md) * [scib](s/scib.md) * [scib-metrics](s/scib-metrics.md) - * [sciClone](s/sciClone.md) - * [ScientificPython](s/ScientificPython.md) + * [SciKeras](s/SciKeras.md) * [scikit-allel](s/scikit-allel.md) * [scikit-bio](s/scikit-bio.md) * [scikit-build](s/scikit-build.md) * [scikit-build-core](s/scikit-build-core.md) - * [scikit-cuda](s/scikit-cuda.md) * [scikit-extremes](s/scikit-extremes.md) * [scikit-image](s/scikit-image.md) * [scikit-learn](s/scikit-learn.md) * [scikit-lego](s/scikit-lego.md) * [scikit-misc](s/scikit-misc.md) - * [scikit-multilearn](s/scikit-multilearn.md) * [scikit-optimize](s/scikit-optimize.md) * [scikit-plot](s/scikit-plot.md) - * [scikit-uplift](s/scikit-uplift.md) * [SCIP](s/SCIP.md) - * [SCIPhI](s/SCIPhI.md) - * [scipy](s/scipy.md) * [SciPy-bundle](s/SciPy-bundle.md) * [SciTools-Iris](s/SciTools-Iris.md) - * [SCnorm](s/SCnorm.md) + * [scNanoGPS](s/scNanoGPS.md) * [Scoary](s/Scoary.md) * [SCons](s/SCons.md) - * [SCOOP](s/SCOOP.md) * [SCopeLoomR](s/SCopeLoomR.md) * [Score-P](s/Score-P.md) * [SCOTCH](s/SCOTCH.md) - * [scp](s/scp.md) * [scPred](s/scPred.md) - * [Scrappie](s/Scrappie.md) * [SCReadCounts](s/SCReadCounts.md) + * [screen](s/screen.md) + * [SCRIPro](s/SCRIPro.md) * [scrublet](s/scrublet.md) + * [scTIE](s/scTIE.md) * [scVelo](s/scVelo.md) * [scvi-tools](s/scvi-tools.md) - * [Scythe](s/Scythe.md) - * [SDCC](s/SDCC.md) - * [SDL](s/SDL.md) * [SDL2](s/SDL2.md) * [SDL2_gfx](s/SDL2_gfx.md) * [SDL2_image](s/SDL2_image.md) * [SDL2_mixer](s/SDL2_mixer.md) * [SDL2_ttf](s/SDL2_ttf.md) - * [SDL_image](s/SDL_image.md) - * [SDSL](s/SDSL.md) * [sdsl-lite](s/sdsl-lite.md) * [Seaborn](s/Seaborn.md) * [SEACells](s/SEACells.md) - * [SearchGUI](s/SearchGUI.md) * [SeaView](s/SeaView.md) - * [SECAPR](s/SECAPR.md) - * [Seeder](s/Seeder.md) * [segemehl](s/segemehl.md) * [segment-anything](s/segment-anything.md) - * [segmentation-models](s/segmentation-models.md) * [segmentation-models-pytorch](s/segmentation-models-pytorch.md) - * [SeisSol](s/SeisSol.md) - * [SelEstim](s/SelEstim.md) * [SELFIES](s/SELFIES.md) * [SemiBin](s/SemiBin.md) * [semla](s/semla.md) + * [sensormotion](s/sensormotion.md) * [Sentence-Transformers](s/Sentence-Transformers.md) * [SentencePiece](s/SentencePiece.md) * [sentinelsat](s/sentinelsat.md) - * [sep](s/sep.md) * [SEPP](s/SEPP.md) - * [Seq-Gen](s/Seq-Gen.md) - * [seq2HLA](s/seq2HLA.md) * [SeqAn](s/SeqAn.md) - * [SeqAn3](s/SeqAn3.md) * [SeqKit](s/SeqKit.md) * [SeqLib](s/SeqLib.md) * [Seqmagick](s/Seqmagick.md) - * [SeqPrep](s/SeqPrep.md) * [seqtk](s/seqtk.md) * [Serf](s/Serf.md) * [setuptools](s/setuptools.md) @@ -3109,27 +2397,18 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [SeuratData](s/SeuratData.md) * [SeuratDisk](s/SeuratDisk.md) * [SeuratWrappers](s/SeuratWrappers.md) - * [sf](s/sf.md) * [sfftk](s/sfftk.md) - * [Shannon](s/Shannon.md) * [SHAP](s/SHAP.md) - * [shapAAR](s/shapAAR.md) - * [SHAPEIT](s/SHAPEIT.md) * [SHAPEIT4](s/SHAPEIT4.md) * [Shapely](s/Shapely.md) * [SharedMeatAxe](s/SharedMeatAxe.md) - * [sharutils](s/sharutils.md) * [Shasta](s/Shasta.md) * [ShengBTE](s/ShengBTE.md) - * [shift](s/shift.md) - * [SHORE](s/SHORE.md) * [Short-Pair](s/Short-Pair.md) * [shovill](s/shovill.md) * [shrinkwrap](s/shrinkwrap.md) * [SHTns](s/SHTns.md) * [Sibelia](s/Sibelia.md) - * [SICER2](s/SICER2.md) - * [sickle](s/sickle.md) * [Siesta](s/Siesta.md) * [SignalP](s/SignalP.md) * [silhouetteRank](s/silhouetteRank.md) @@ -3140,48 +2419,41 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [SimPEG](s/SimPEG.md) * [SIMPLE](s/SIMPLE.md) * [Simple-DFTD3](s/Simple-DFTD3.md) - * [SimpleElastix](s/SimpleElastix.md) * [SimpleITK](s/SimpleITK.md) - * [simpy](s/simpy.md) * [Simstrat](s/Simstrat.md) - * [SimVascular](s/SimVascular.md) * [Single-cell-python-bundle](s/Single-cell-python-bundle.md) * [SingleM](s/SingleM.md) * [Singular](s/Singular.md) * [sinto](s/sinto.md) - * [SiNVICT](s/SiNVICT.md) * [SIONlib](s/SIONlib.md) * [SIP](s/SIP.md) * [SIRIUS](s/SIRIUS.md) * [sirocco](s/sirocco.md) * [siscone](s/siscone.md) + * [sisl](s/sisl.md) * [SISSO](s/SISSO.md) * [SISSO++](s/SISSO++.md) * [SKA2](s/SKA2.md) + * [skani](s/skani.md) * [SKESA](s/SKESA.md) - * [sketchmap](s/sketchmap.md) - * [skewer](s/skewer.md) * [sklearn-pandas](s/sklearn-pandas.md) * [sklearn-som](s/sklearn-som.md) * [skorch](s/skorch.md) * [sktime](s/sktime.md) * [SlamDunk](s/SlamDunk.md) - * [SLATEC](s/SLATEC.md) * [SLEPc](s/SLEPc.md) * [slepc4py](s/slepc4py.md) * [sleuth](s/sleuth.md) - * [slidingwindow](s/slidingwindow.md) + * [Slideflow](s/Slideflow.md) * [SLiM](s/SLiM.md) * [slow5tools](s/slow5tools.md) * [slurm-drmaa](s/slurm-drmaa.md) + * [SlurmViewer](s/SlurmViewer.md) * [smafa](s/smafa.md) - * [smallgenomeutilities](s/smallgenomeutilities.md) * [SMAP](s/SMAP.md) - * [SMARTdenovo](s/SMARTdenovo.md) * [SMC++](s/SMC++.md) * [smfishHmrf](s/smfishHmrf.md) * [smithwaterman](s/smithwaterman.md) - * [Smoldyn](s/Smoldyn.md) * [smooth-topk](s/smooth-topk.md) * [SMRT-Link](s/SMRT-Link.md) * [SMV](s/SMV.md) @@ -3191,26 +2463,19 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [SNAP-ESA-python](s/SNAP-ESA-python.md) * [SNAP-HMM](s/SNAP-HMM.md) * [SNAPE-pooled](s/SNAPE-pooled.md) - * [snaphu](s/snaphu.md) * [snappy](s/snappy.md) * [Sniffles](s/Sniffles.md) * [snippy](s/snippy.md) * [snp-sites](s/snp-sites.md) * [snpEff](s/snpEff.md) - * [SNPhylo](s/SNPhylo.md) - * [SNPomatic](s/SNPomatic.md) - * [SOAPaligner](s/SOAPaligner.md) + * [SNPTEST](s/SNPTEST.md) * [SOAPdenovo-Trans](s/SOAPdenovo-Trans.md) - * [SOAPdenovo2](s/SOAPdenovo2.md) - * [SOAPfuse](s/SOAPfuse.md) - * [socat](s/socat.md) * [SOCI](s/SOCI.md) - * [SolexaQA++](s/SolexaQA++.md) + * [Solids4foam](s/Solids4foam.md) * [solo](s/solo.md) * [sonic](s/sonic.md) * [SoPlex](s/SoPlex.md) * [SoQt](s/SoQt.md) - * [SortMeRNA](s/SortMeRNA.md) * [SoupX](s/SoupX.md) * [SoX](s/SoX.md) * [SoXt](s/SoXt.md) @@ -3226,64 +2491,51 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [spatialreg](s/spatialreg.md) * [spdlog](s/spdlog.md) * [SpectrA](s/SpectrA.md) - * [spectral.methods](s/spectral.methods.md) + * [Spectre](s/Spectre.md) * [speech_tools](s/speech_tools.md) * [SPEI](s/SPEI.md) * [spektral](s/spektral.md) * [SpFFT](s/SpFFT.md) * [spglib](s/spglib.md) * [spglib-python](s/spglib-python.md) - * [Sphinx](s/Sphinx.md) * [Sphinx-RTD-Theme](s/Sphinx-RTD-Theme.md) - * [SpiceyPy](s/SpiceyPy.md) * [SpiecEasi](s/SpiecEasi.md) * [spla](s/spla.md) - * [SplAdder](s/SplAdder.md) - * [SPLASH](s/SPLASH.md) - * [SpliceMap](s/SpliceMap.md) - * [split-seq](s/split-seq.md) - * [splitRef](s/splitRef.md) * [SPM](s/SPM.md) * [spoa](s/spoa.md) * [SPOOLES](s/SPOOLES.md) * [SPOTPY](s/SPOTPY.md) * [SPRNG](s/SPRNG.md) * [Spyder](s/Spyder.md) + * [sPyRMSD](s/sPyRMSD.md) * [SQLAlchemy](s/SQLAlchemy.md) * [SQLite](s/SQLite.md) + * [squashfs-tools](s/squashfs-tools.md) * [SqueezeMeta](s/SqueezeMeta.md) * [Squidpy](s/Squidpy.md) * [SRA-Toolkit](s/SRA-Toolkit.md) * [sradownloader](s/sradownloader.md) * [SRPRISM](s/SRPRISM.md) * [SRST2](s/SRST2.md) - * [SSAHA2](s/SSAHA2.md) - * [SSN](s/SSN.md) * [SSPACE_Basic](s/SSPACE_Basic.md) * [SSW](s/SSW.md) * [Stable-Baselines3](s/Stable-Baselines3.md) * [STACEY](s/STACEY.md) * [Stack](s/Stack.md) * [Stacks](s/Stacks.md) - * [STAMP](s/STAMP.md) - * [StaMPS](s/StaMPS.md) - * [Stampy](s/Stampy.md) * [STAR](s/STAR.md) * [STAR-CCM+](s/STAR-CCM+.md) - * [STAR-Fusion](s/STAR-Fusion.md) + * [starcode](s/starcode.md) * [stardist](s/stardist.md) * [starparser](s/starparser.md) - * [stars](s/stars.md) * [Stata](s/Stata.md) * [Statistics-R](s/Statistics-R.md) * [statsmodels](s/statsmodels.md) * [STEAK](s/STEAK.md) - * [STIR](s/STIR.md) - * [stpipeline](s/stpipeline.md) + * [Stellarscope](s/Stellarscope.md) * [strace](s/strace.md) * [Strainberry](s/Strainberry.md) * [STREAM](s/STREAM.md) - * [strelka](s/strelka.md) * [StringTie](s/StringTie.md) * [stripy](s/stripy.md) * [STRique](s/STRique.md) @@ -3297,37 +2549,26 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [subset-bam](s/subset-bam.md) * [subunit](s/subunit.md) * [Subversion](s/Subversion.md) - * [suds](s/suds.md) * [SuiteSparse](s/SuiteSparse.md) - * [SUMACLUST](s/SUMACLUST.md) - * [SUMATRA](s/SUMATRA.md) * [SUMO](s/SUMO.md) * [SUNDIALS](s/SUNDIALS.md) - * [SunPy](s/SunPy.md) * [SuperLU](s/SuperLU.md) * [SuperLU_DIST](s/SuperLU_DIST.md) - * [supermagic](s/supermagic.md) - * [supernova](s/supernova.md) * [SUPPA](s/SUPPA.md) + * [Suppressor](s/Suppressor.md) * [SURVIVOR](s/SURVIVOR.md) * [SVclone](s/SVclone.md) - * [SVDetect](s/SVDetect.md) - * [SVDquest](s/SVDquest.md) * [SVDSS2](s/SVDSS2.md) * [SVG](s/SVG.md) * [SVIM](s/SVIM.md) * [svist4get](s/svist4get.md) - * [swarm](s/swarm.md) - * [SWASH](s/SWASH.md) * [SWAT+](s/SWAT+.md) * [swifter](s/swifter.md) * [SWIG](s/SWIG.md) * [SWIPE](s/SWIPE.md) - * [swissknife](s/swissknife.md) * [SymEngine](s/SymEngine.md) * [SymEngine-python](s/SymEngine-python.md) * [SYMMETRICA](s/SYMMETRICA.md) - * [SYMPHONY](s/SYMPHONY.md) * [sympy](s/sympy.md) * [synapseclient](s/synapseclient.md) * [synthcity](s/synthcity.md) @@ -3339,10 +2580,7 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [t-SNE-CUDA](t/t-SNE-CUDA.md) * [tabix](t/tabix.md) * [tabixpp](t/tabixpp.md) - * [taco](t/taco.md) * [TagDust](t/TagDust.md) - * [TagLib](t/TagLib.md) - * [Taiyaki](t/Taiyaki.md) * [TALON](t/TALON.md) * [TALYS](t/TALYS.md) * [TAMkin](t/TAMkin.md) @@ -3353,15 +2591,12 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [TBA](t/TBA.md) * [tbb](t/tbb.md) * [tbl2asn](t/tbl2asn.md) - * [TCC](t/TCC.md) + * [tblis](t/tblis.md) * [Tcl](t/Tcl.md) * [TCLAP](t/TCLAP.md) * [tcsh](t/tcsh.md) * [tdlib](t/tdlib.md) - * [tecplot360ex](t/tecplot360ex.md) * [TELEMAC-MASCARET](t/TELEMAC-MASCARET.md) - * [Telescope](t/Telescope.md) - * [Teneto](t/Teneto.md) * [tensorboard](t/tensorboard.md) * [tensorboardX](t/tensorboardX.md) * [TensorFlow](t/TensorFlow.md) @@ -3370,35 +2605,27 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [TensorFlow-Graphics](t/TensorFlow-Graphics.md) * [tensorflow-probability](t/tensorflow-probability.md) * [TensorRT](t/TensorRT.md) - * [terastructure](t/terastructure.md) + * [tensorstore](t/tensorstore.md) * [termcolor](t/termcolor.md) - * [Tesla-Deployment-Kit](t/Tesla-Deployment-Kit.md) * [tesseract](t/tesseract.md) - * [testpath](t/testpath.md) + * [test-drive](t/test-drive.md) + * [TestU01](t/TestU01.md) * [TetGen](t/TetGen.md) - * [TEToolkit](t/TEToolkit.md) * [TEtranscripts](t/TEtranscripts.md) * [texinfo](t/texinfo.md) * [texlive](t/texlive.md) - * [Text-CSV](t/Text-CSV.md) + * [text-unidecode](t/text-unidecode.md) * [TF-COMB](t/TF-COMB.md) * [TFEA](t/TFEA.md) * [Theano](t/Theano.md) * [ThemisPy](t/ThemisPy.md) - * [THetA](t/THetA.md) * [thirdorder](t/thirdorder.md) - * [thurstonianIRT](t/thurstonianIRT.md) - * [TiCCutils](t/TiCCutils.md) - * [tidybayes](t/tidybayes.md) * [tidymodels](t/tidymodels.md) - * [Tika](t/Tika.md) * [tiktoken](t/tiktoken.md) - * [TiMBL](t/TiMBL.md) * [time](t/time.md) * [timm](t/timm.md) * [TINKER](t/TINKER.md) * [tiny-cuda-nn](t/tiny-cuda-nn.md) - * [TinyDB](t/TinyDB.md) * [TinyXML](t/TinyXML.md) * [Tk](t/Tk.md) * [Tkinter](t/Tkinter.md) @@ -3427,19 +2654,15 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [torchvf](t/torchvf.md) * [torchvision](t/torchvision.md) * [tornado](t/tornado.md) - * [TotalView](t/TotalView.md) * [tox](t/tox.md) * [tqdm](t/tqdm.md) - * [Tracer](t/Tracer.md) * [TranscriptClean](t/TranscriptClean.md) * [TransDecoder](t/TransDecoder.md) * [Transformers](t/Transformers.md) * [Transrate](t/Transrate.md) - * [travis](t/travis.md) * [TRAVIS-Analyzer](t/TRAVIS-Analyzer.md) - * [treatSens](t/treatSens.md) * [TreeMix](t/TreeMix.md) - * [TreeShrink](t/TreeShrink.md) + * [treeseg](t/treeseg.md) * [TRF](t/TRF.md) * [Triangle](t/Triangle.md) * [Trilinos](t/Trilinos.md) @@ -3456,39 +2679,27 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [TRIQS-tprf](t/TRIQS-tprf.md) * [Triton](t/Triton.md) * [tRNAscan-SE](t/tRNAscan-SE.md) - * [TRUST](t/TRUST.md) * [TRUST4](t/TRUST4.md) + * [trusTEr](t/trusTEr.md) * [Trycycler](t/Trycycler.md) + * [tsai](t/tsai.md) * [tseriesEntropy](t/tseriesEntropy.md) - * [tsne](t/tsne.md) - * [turbinesFoam](t/turbinesFoam.md) * [TurboVNC](t/TurboVNC.md) - * [TVB](t/TVB.md) - * [tvb-data](t/tvb-data.md) - * [TVB-deps](t/TVB-deps.md) - * [tvb-framework](t/tvb-framework.md) - * [tvb-library](t/tvb-library.md) * [TWL-NINJA](t/TWL-NINJA.md) * [TXR](t/TXR.md) * [typing-extensions](t/typing-extensions.md) * [u](u/index.md) * [UCC](u/UCC.md) * [UCC-CUDA](u/UCC-CUDA.md) - * [UCLUST](u/UCLUST.md) * [UCX](u/UCX.md) * [UCX-CUDA](u/UCX-CUDA.md) * [ucx-py](u/ucx-py.md) * [UCX-ROCm](u/UCX-ROCm.md) - * [udocker](u/udocker.md) * [UDUNITS](u/UDUNITS.md) - * [UFL](u/UFL.md) * [Ultralytics](u/Ultralytics.md) * [umap-learn](u/umap-learn.md) * [UMI-tools](u/UMI-tools.md) - * [umi4cPackage](u/umi4cPackage.md) - * [umis](u/umis.md) * [Umpire](u/Umpire.md) - * [UNAFold](u/UNAFold.md) * [uncertainties](u/uncertainties.md) * [uncertainty-calibration](u/uncertainty-calibration.md) * [Uni-Core](u/Uni-Core.md) @@ -3498,45 +2709,33 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [unifdef](u/unifdef.md) * [UniFrac](u/UniFrac.md) * [unimap](u/unimap.md) - * [units](u/units.md) + * [unittest-xml-reporting](u/unittest-xml-reporting.md) * [unixODBC](u/unixODBC.md) * [unrar](u/unrar.md) * [UnZip](u/UnZip.md) - * [UQTk](u/UQTk.md) * [USEARCH](u/USEARCH.md) * [UShER](u/UShER.md) - * [USPEX](u/USPEX.md) * [utf8proc](u/utf8proc.md) * [util-linux](u/util-linux.md) * [v](v/index.md) - * [V8](v/V8.md) * [vaeda](v/vaeda.md) * [Vala](v/Vala.md) * [Valgrind](v/Valgrind.md) * [Vamb](v/Vamb.md) - * [Vampir](v/Vampir.md) * [Vampire](v/Vampire.md) * [VAMPIRE-ASM](v/VAMPIRE-ASM.md) - * [VarDict](v/VarDict.md) - * [variant_tools](v/variant_tools.md) - * [VariantMetaCaller](v/VariantMetaCaller.md) * [VarScan](v/VarScan.md) - * [vartools](v/vartools.md) * [VASP](v/VASP.md) - * [VAtools](v/VAtools.md) + * [VASPKIT](v/VASPKIT.md) * [vawk](v/vawk.md) * [VBZ-Compression](v/VBZ-Compression.md) - * [VCF-kit](v/VCF-kit.md) * [vcflib](v/vcflib.md) - * [vcfnp](v/vcfnp.md) * [VCFtools](v/VCFtools.md) * [vConTACT2](v/vConTACT2.md) - * [VEGAS](v/VEGAS.md) * [velocyto](v/velocyto.md) * [Velvet](v/Velvet.md) * [VEP](v/VEP.md) - * [verifyBamID](v/verifyBamID.md) - * [VERSE](v/VERSE.md) + * [Verkko](v/Verkko.md) * [versioningit](v/versioningit.md) * [VESTA](v/VESTA.md) * [ViennaRNA](v/ViennaRNA.md) @@ -3553,23 +2752,18 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [VisPy](v/VisPy.md) * [vitessce-python](v/vitessce-python.md) * [vitessceR](v/vitessceR.md) + * [vLLM](v/vLLM.md) * [VMD](v/VMD.md) - * [VMTK](v/VMTK.md) * [voltools](v/voltools.md) * [vorbis-tools](v/vorbis-tools.md) * [Voro++](v/Voro++.md) - * [vsc-base](v/vsc-base.md) - * [vsc-install](v/vsc-install.md) + * [vRhyme](v/vRhyme.md) * [vsc-mympirun](v/vsc-mympirun.md) - * [vsc-mympirun-scoop](v/vsc-mympirun-scoop.md) - * [vsc-processcontrol](v/vsc-processcontrol.md) * [VSCode](v/VSCode.md) * [VSEARCH](v/VSEARCH.md) * [vt](v/vt.md) * [VTK](v/VTK.md) * [VTune](v/VTune.md) - * [VV](v/VV.md) - * [VXL](v/VXL.md) * [w](w/index.md) * [waLBerla](w/waLBerla.md) * [wandb](w/wandb.md) @@ -3579,37 +2773,33 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [Waylandpp](w/Waylandpp.md) * [WCSLIB](w/WCSLIB.md) * [WCT](w/WCT.md) - * [wcwidth](w/wcwidth.md) - * [webin-cli](w/webin-cli.md) * [WebKitGTK+](w/WebKitGTK+.md) * [weblogo](w/weblogo.md) - * [WebSocket++](w/WebSocket++.md) + * [webvtt-py](w/webvtt-py.md) * [WEKA](w/WEKA.md) + * [Wengan](w/Wengan.md) * [WFA2](w/WFA2.md) * [wfdb](w/wfdb.md) * [WGDgc](w/WGDgc.md) * [wget](w/wget.md) * [wgsim](w/wgsim.md) - * [WHAM](w/WHAM.md) * [WhatsHap](w/WhatsHap.md) - * [wheel](w/wheel.md) + * [Whisper](w/Whisper.md) + * [whisper-ctranslate2](w/whisper-ctranslate2.md) + * [WhisperX](w/WhisperX.md) * [WIEN2k](w/WIEN2k.md) * [WildMagic](w/WildMagic.md) * [Winnowmap](w/Winnowmap.md) - * [WisecondorX](w/WisecondorX.md) - * [WISExome](w/WISExome.md) - * [wkhtmltopdf](w/wkhtmltopdf.md) * [worker](w/worker.md) * [wpebackend-fdo](w/wpebackend-fdo.md) * [WPS](w/WPS.md) * [wradlib](w/wradlib.md) * [wrapt](w/wrapt.md) * [WRF](w/WRF.md) - * [WRF-Fire](w/WRF-Fire.md) * [wrf-python](w/wrf-python.md) * [WSClean](w/WSClean.md) * [wtdbg2](w/wtdbg2.md) - * [wxPropertyGrid](w/wxPropertyGrid.md) + * [wurlitzer](w/wurlitzer.md) * [wxPython](w/wxPython.md) * [wxWidgets](w/wxWidgets.md) * [x](x/index.md) @@ -3617,49 +2807,29 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [x13as](x/x13as.md) * [x264](x/x264.md) * [x265](x/x265.md) - * [XALT](x/XALT.md) * [xarray](x/xarray.md) * [XBeach](x/XBeach.md) - * [xbitmaps](x/xbitmaps.md) - * [xcb-proto](x/xcb-proto.md) - * [xcb-util](x/xcb-util.md) - * [xcb-util-image](x/xcb-util-image.md) - * [xcb-util-keysyms](x/xcb-util-keysyms.md) - * [xcb-util-renderutil](x/xcb-util-renderutil.md) - * [xcb-util-wm](x/xcb-util-wm.md) - * [xCell](x/xCell.md) * [XCFun](x/XCFun.md) * [xclip](x/xclip.md) * [XCrySDen](x/XCrySDen.md) * [xdotool](x/xdotool.md) * [Xerces-C++](x/Xerces-C++.md) * [xESMF](x/xESMF.md) - * [xextproto](x/xextproto.md) - * [xf86vidmodeproto](x/xf86vidmodeproto.md) + * [xformers](x/xformers.md) * [XGBoost](x/XGBoost.md) - * [XGrafix](x/XGrafix.md) - * [xineramaproto](x/xineramaproto.md) - * [XKeyboardConfig](x/XKeyboardConfig.md) * [XlsxWriter](x/XlsxWriter.md) - * [XMDS2](x/XMDS2.md) * [Xmipp](x/Xmipp.md) * [xmitgcm](x/xmitgcm.md) * [XML-Compile](x/XML-Compile.md) * [XML-LibXML](x/XML-LibXML.md) * [XML-Parser](x/XML-Parser.md) * [xmlf90](x/xmlf90.md) - * [XMLSec](x/XMLSec.md) - * [XMLStarlet](x/XMLStarlet.md) - * [xonsh](x/xonsh.md) - * [XOOPIC](x/XOOPIC.md) * [xorg-macros](x/xorg-macros.md) * [xpdf](x/xpdf.md) * [XPLOR-NIH](x/XPLOR-NIH.md) * [xprop](x/xprop.md) * [xproto](x/xproto.md) - * [XSD](x/XSD.md) * [xskillscore](x/xskillscore.md) - * [XTandem](x/XTandem.md) * [xtb](x/xtb.md) * [xtb-IFF](x/xtb-IFF.md) * [xtensor](x/xtensor.md) @@ -3670,12 +2840,10 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [XZ](x/XZ.md) * [y](y/index.md) * [YACS](y/YACS.md) - * [Yade](y/Yade.md) * [yaff](y/yaff.md) + * [YaHS](y/YaHS.md) * [Yambo](y/Yambo.md) * [yaml-cpp](y/yaml-cpp.md) - * [YANK](y/YANK.md) - * [YAPS](y/YAPS.md) * [Yasm](y/Yasm.md) * [YAXT](y/YAXT.md) * [yell](y/yell.md) @@ -3694,14 +2862,11 @@ EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [zfp](z/zfp.md) * [Zgoubi](z/Zgoubi.md) * [ZIMPL](z/ZIMPL.md) - * [zingeR](z/zingeR.md) * [Zip](z/Zip.md) * [zlib](z/zlib.md) * [zlib-ng](z/zlib-ng.md) - * [zlibbioc](z/zlibbioc.md) * [Zoltan](z/Zoltan.md) * [Zopfli](z/Zopfli.md) - * [ZPAQ](z/ZPAQ.md) * [zsh](z/zsh.md) * [zstd](z/zstd.md) * [zUMIs](z/zUMIs.md) diff --git a/docs/version-specific/supported-software/j/JACUSA2helper.md b/docs/version-specific/supported-software/j/JACUSA2helper.md new file mode 100644 index 0000000000..df2e120d83 --- /dev/null +++ b/docs/version-specific/supported-software/j/JACUSA2helper.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# JACUSA2helper + +Auxiliary R package for assessment of JACUSA2 results + +*homepage*: + +version | toolchain +--------|---------- +``1.9.9.9675`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/j/JAGS.md b/docs/version-specific/supported-software/j/JAGS.md index 437c9c13a1..3af86aac45 100644 --- a/docs/version-specific/supported-software/j/JAGS.md +++ b/docs/version-specific/supported-software/j/JAGS.md @@ -4,28 +4,20 @@ search: --- # JAGS -JAGS is Just Another Gibbs Sampler. It is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation +JAGS is Just Another Gibbs Sampler. It is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation *homepage*: version | toolchain --------|---------- -``4.2.0`` | ``foss/2016a`` -``4.2.0`` | ``intel/2016a`` -``4.2.0`` | ``intel/2017a`` -``4.3.0`` | ``foss/2017b`` -``4.3.0`` | ``foss/2018b`` -``4.3.0`` | ``foss/2019a`` -``4.3.0`` | ``foss/2019b`` -``4.3.0`` | ``foss/2020a`` ``4.3.0`` | ``foss/2020b`` ``4.3.0`` | ``foss/2021a`` ``4.3.0`` | ``foss/2021b`` ``4.3.0`` | ``fosscuda/2020b`` -``4.3.0`` | ``intel/2017b`` ``4.3.1`` | ``foss/2022a`` ``4.3.2`` | ``foss/2022b`` ``4.3.2`` | ``foss/2023a`` +``4.3.2`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/j/JAXFrontCE.md b/docs/version-specific/supported-software/j/JAXFrontCE.md deleted file mode 100644 index 668640995d..0000000000 --- a/docs/version-specific/supported-software/j/JAXFrontCE.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# JAXFrontCE - -JAXFront is a technology to generate graphical user interfaces on multiple channels (Java Swing, HTML, PDF) on the basis of an XML schema. - -*homepage*: - -version | toolchain ---------|---------- -``2.75`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/j/JUBE.md b/docs/version-specific/supported-software/j/JUBE.md deleted file mode 100644 index a3895c7f63..0000000000 --- a/docs/version-specific/supported-software/j/JUBE.md +++ /dev/null @@ -1,22 +0,0 @@ ---- -search: - boost: 0.5 ---- -# JUBE - -The JUBE benchmarking environment provides a script based framework to easily create benchmark sets, run those sets on different computer systems and evaluate the results. - -*homepage*: - -version | toolchain ---------|---------- -``2.0.3`` | ``system`` -``2.0.4`` | ``system`` -``2.0.5`` | ``system`` -``2.4.0`` | ``system`` -``2.4.1`` | ``system`` -``2.4.2`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/j/JUnit.md b/docs/version-specific/supported-software/j/JUnit.md deleted file mode 100644 index 1d0557d208..0000000000 --- a/docs/version-specific/supported-software/j/JUnit.md +++ /dev/null @@ -1,34 +0,0 @@ ---- -search: - boost: 0.5 ---- -# JUnit - -A programmer-oriented testing framework for Java. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``4.10`` | ``-Java-1.7.0_10`` | ``system`` -``4.10`` | ``-Java-1.7.0_21`` | ``system`` -``4.11`` | ``-Java-1.7.0_15`` | ``system`` -``4.11`` | ``-Java-1.7.0_21`` | ``system`` -``4.11`` | ``-Java-1.7.0_60`` | ``system`` -``4.11`` | ``-Java-1.7.0_75`` | ``system`` -``4.11`` | ``-Java-1.7.0_79`` | ``system`` -``4.12`` | ``-Java-1.7.0_80`` | ``system`` -``4.12`` | ``-Java-1.8.0_112`` | ``system`` -``4.12`` | ``-Java-1.8.0_121`` | ``system`` -``4.12`` | ``-Java-1.8.0_144`` | ``system`` -``4.12`` | ``-Java-1.8.0_152`` | ``system`` -``4.12`` | ``-Java-1.8.0_162`` | ``system`` -``4.12`` | ``-Java-1.8.0_66`` | ``system`` -``4.12`` | ``-Java-1.8.0_72`` | ``system`` -``4.12`` | ``-Java-1.8.0_77`` | ``system`` -``4.12`` | ``-Java-1.8.0_92`` | ``system`` -``4.12`` | ``-Java-1.8`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/j/JWM.md b/docs/version-specific/supported-software/j/JWM.md deleted file mode 100644 index 1b6a712cf5..0000000000 --- a/docs/version-specific/supported-software/j/JWM.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# JWM - -JWM is a light-weight window manager for the X11 Window System. - -*homepage*: - -version | toolchain ---------|---------- -``2.3.5`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/j/Jansson.md b/docs/version-specific/supported-software/j/Jansson.md index e2ecf09e00..3c8da86c7a 100644 --- a/docs/version-specific/supported-software/j/Jansson.md +++ b/docs/version-specific/supported-software/j/Jansson.md @@ -14,7 +14,6 @@ version | toolchain ``2.13.1`` | ``GCC/11.2.0`` ``2.14`` | ``GCC/11.3.0`` ``2.14`` | ``GCC/12.3.0`` -``2.6`` | ``GCC/4.8.3`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/j/JasPer.md b/docs/version-specific/supported-software/j/JasPer.md index 9b6d796663..58072223b6 100644 --- a/docs/version-specific/supported-software/j/JasPer.md +++ b/docs/version-specific/supported-software/j/JasPer.md @@ -4,31 +4,12 @@ search: --- # JasPer -The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard. +The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.900.1`` | ``GCCcore/5.4.0`` -``1.900.1`` | ``GCCcore/6.4.0`` -``1.900.1`` | ``GCCcore/8.2.0`` -``1.900.1`` | ``foss/2016a`` -``1.900.1`` | ``foss/2016b`` -``1.900.1`` | ``foss/2017a`` -``1.900.1`` | ``intel/2016a`` -``1.900.1`` | ``intel/2016b`` -``1.900.1`` | ``intel/2017a`` -``2.0.10`` | ``intel/2016b`` -``2.0.12`` | ``GCCcore/6.4.0`` -``2.0.12`` | ``foss/2016b`` -``2.0.12`` | ``intel/2017a`` -``2.0.14`` | ``GCCcore/6.4.0`` -``2.0.14`` | ``GCCcore/7.3.0`` -``2.0.14`` | ``GCCcore/8.2.0`` -``2.0.14`` | ``GCCcore/8.3.0`` -``2.0.14`` | ``GCCcore/9.3.0`` -``2.0.16`` | ``GCCcore/9.3.0`` ``2.0.24`` | ``GCCcore/10.2.0`` ``2.0.28`` | ``GCCcore/10.3.0`` ``2.0.33`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/j/Java.md b/docs/version-specific/supported-software/j/Java.md index d690cf32ac..d5bb634560 100644 --- a/docs/version-specific/supported-software/j/Java.md +++ b/docs/version-specific/supported-software/j/Java.md @@ -6,61 +6,20 @@ search: Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.6.0_24`` | | ``system`` -``1.7.0_10`` | | ``system`` -``1.7.0_15`` | | ``system`` -``1.7.0_21`` | | ``system`` -``1.7.0_40`` | | ``system`` -``1.7.0_45`` | | ``system`` -``1.7.0_60`` | | ``system`` -``1.7.0_75`` | | ``system`` -``1.7.0_76`` | | ``system`` -``1.7.0_79`` | | ``system`` -``1.7.0_80`` | | ``system`` -``1.8.0_112`` | | ``system`` -``1.8.0_121`` | | ``system`` -``1.8.0_131`` | | ``system`` -``1.8.0_141`` | | ``system`` -``1.8.0_144`` | | ``system`` -``1.8.0_152`` | | ``system`` -``1.8.0_162`` | | ``system`` -``1.8.0_172`` | | ``system`` -``1.8.0_181`` | | ``system`` -``1.8.0_192`` | | ``system`` -``1.8.0_20`` | | ``system`` -``1.8.0_202`` | | ``system`` -``1.8.0_212`` | | ``system`` -``1.8.0_221`` | | ``system`` -``1.8.0_231`` | | ``system`` ``1.8.0_241`` | | ``system`` -``1.8.0_25`` | | ``system`` ``1.8.0_271`` | | ``system`` ``1.8.0_281`` | | ``system`` ``1.8.0_292`` | ``-OpenJDK`` | ``system`` -``1.8.0_31`` | | ``system`` ``1.8.0_311`` | | ``system`` -``1.8.0_40`` | | ``system`` -``1.8.0_45`` | | ``system`` -``1.8.0_60`` | | ``system`` -``1.8.0_65`` | | ``system`` -``1.8.0_66`` | | ``system`` -``1.8.0_72`` | | ``system`` -``1.8.0_74`` | | ``system`` -``1.8.0_77`` | | ``system`` -``1.8.0_92`` | | ``system`` ``1.8`` | | ``system`` -``1.8_191`` | ``-b26-OpenJDK`` | ``system`` ``1.8_265`` | ``-b01-OpenJDK-aarch64`` | ``system`` -``1.9.0.4`` | | ``system`` ``11.0.16`` | | ``system`` ``11.0.18`` | | ``system`` -``11.0.2`` | | ``system`` ``11.0.20`` | | ``system`` -``11.0.6`` | ``-ppc64le`` | ``system`` ``11.0.8`` | ``-aarch64`` | ``system`` ``11`` | | ``system`` ``13.0.2`` | | ``system`` @@ -77,6 +36,7 @@ version | versionsuffix | toolchain ``19.0.2`` | | ``system`` ``19`` | | ``system`` ``21.0.2`` | | ``system`` +``21.0.5`` | | ``system`` ``21`` | | ``system`` ``8.345`` | | ``system`` ``8.362`` | | ``system`` diff --git a/docs/version-specific/supported-software/j/JavaFX.md b/docs/version-specific/supported-software/j/JavaFX.md deleted file mode 100644 index d630004869..0000000000 --- a/docs/version-specific/supported-software/j/JavaFX.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# JavaFX - -OpenJFX is an open source, next generation client application platform for desktop, mobile and embedded systems built on Java - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``11.0.2`` | ``_linux-x64_bin-sdk`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/j/Jellyfish.md b/docs/version-specific/supported-software/j/Jellyfish.md index 29a54e2472..3d46c1e109 100644 --- a/docs/version-specific/supported-software/j/Jellyfish.md +++ b/docs/version-specific/supported-software/j/Jellyfish.md @@ -6,25 +6,16 @@ search: Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.1.11`` | ``foss/2016a`` -``1.1.11`` | ``foss/2016b`` -``1.1.12`` | ``foss/2018b`` -``1.1.12`` | ``intel/2018a`` -``2.2.10`` | ``foss/2018b`` -``2.2.10`` | ``intel/2018a`` -``2.2.6`` | ``foss/2016b`` -``2.2.6`` | ``intel/2017a`` ``2.3.0`` | ``GCC/10.2.0`` ``2.3.0`` | ``GCC/10.3.0`` ``2.3.0`` | ``GCC/11.2.0`` ``2.3.0`` | ``GCC/11.3.0`` ``2.3.0`` | ``GCC/12.2.0`` -``2.3.0`` | ``GCC/8.2.0-2.31.1`` -``2.3.0`` | ``GCC/8.3.0`` +``2.3.1`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/j/JiTCODE.md b/docs/version-specific/supported-software/j/JiTCODE.md deleted file mode 100644 index 0db3528872..0000000000 --- a/docs/version-specific/supported-software/j/JiTCODE.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# JiTCODE - -Just-in-time compilation for ordinary/delay/stochastic differential equations (DDEs) - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.3.2`` | ``-Python-3.6.4`` | ``intel/2018a`` -``1.4.0`` | ``-Python-3.7.2`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/j/JsonCpp.md b/docs/version-specific/supported-software/j/JsonCpp.md index 7a76df51b4..d274fb55b7 100644 --- a/docs/version-specific/supported-software/j/JsonCpp.md +++ b/docs/version-specific/supported-software/j/JsonCpp.md @@ -6,16 +6,13 @@ search: JsonCpp is a C++ library that allows manipulating JSON values, including serialization and deserialization to and from strings. It can also preserve existing comment in unserialization/serialization steps, making it a convenient format to store user input files. -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.10.7`` | ``GCCcore/8.2.0`` -``1.9.3`` | ``GCCcore/8.3.0`` ``1.9.4`` | ``GCCcore/10.2.0`` ``1.9.4`` | ``GCCcore/10.3.0`` ``1.9.4`` | ``GCCcore/11.2.0`` -``1.9.4`` | ``GCCcore/9.3.0`` ``1.9.5`` | ``GCCcore/11.3.0`` ``1.9.5`` | ``GCCcore/12.2.0`` ``1.9.5`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/j/Judy.md b/docs/version-specific/supported-software/j/Judy.md index 0eb3fd5a25..3c1f8eae99 100644 --- a/docs/version-specific/supported-software/j/Judy.md +++ b/docs/version-specific/supported-software/j/Judy.md @@ -16,8 +16,7 @@ version | toolchain ``1.0.5`` | ``GCCcore/11.3.0`` ``1.0.5`` | ``GCCcore/12.2.0`` ``1.0.5`` | ``GCCcore/12.3.0`` -``1.0.5`` | ``GCCcore/8.2.0`` -``1.0.5`` | ``GCCcore/8.3.0`` +``1.0.5`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/j/Julia.md b/docs/version-specific/supported-software/j/Julia.md index e9bc9823f5..ea0adfb722 100644 --- a/docs/version-specific/supported-software/j/Julia.md +++ b/docs/version-specific/supported-software/j/Julia.md @@ -10,11 +10,11 @@ Julia is a high-level, high-performance dynamic programming language for numeric version | versionsuffix | toolchain --------|---------------|---------- -``1.1.1`` | ``-linux-x86_64`` | ``system`` ``1.10.0`` | ``-linux-x86_64`` | ``system`` ``1.10.3`` | ``-linux-x86_64`` | ``system`` ``1.10.4`` | ``-linux-x86_64`` | ``system`` -``1.2.0`` | ``-linux-x86_64`` | ``system`` +``1.10.5`` | ``-linux-x86_64`` | ``system`` +``1.11.3`` | ``-linux-x86_64`` | ``system`` ``1.3.1`` | ``-linux-x86_64`` | ``system`` ``1.4.0`` | ``-linux-x86_64`` | ``system`` ``1.4.1`` | ``-linux-x86_64`` | ``system`` diff --git a/docs/version-specific/supported-software/j/JupyterHub.md b/docs/version-specific/supported-software/j/JupyterHub.md index 90e8b91fce..59bbf76209 100644 --- a/docs/version-specific/supported-software/j/JupyterHub.md +++ b/docs/version-specific/supported-software/j/JupyterHub.md @@ -4,20 +4,18 @@ search: --- # JupyterHub -JupyterHub is a multiuser version of the Jupyter (IPython) notebook designed for centralized deployments in companies, university classrooms and research labs. +JupyterHub is a multiuser version of the Jupyter (IPython) notebook designed for centralized deployments in companies, university classrooms and research labs. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.6.1`` | ``-Python-3.5.1`` | ``foss/2016a`` -``0.8.1`` | ``-Python-3.6.4`` | ``foss/2017a`` -``1.1.0`` | | ``GCCcore/10.2.0`` -``1.4.1`` | | ``GCCcore/10.3.0`` -``3.0.0`` | | ``GCCcore/11.3.0`` -``4.0.1`` | | ``GCCcore/12.2.0`` -``4.0.2`` | | ``GCCcore/12.3.0`` -``4.1.5`` | | ``GCCcore/13.2.0`` +version | toolchain +--------|---------- +``1.1.0`` | ``GCCcore/10.2.0`` +``1.4.1`` | ``GCCcore/10.3.0`` +``3.0.0`` | ``GCCcore/11.3.0`` +``4.0.1`` | ``GCCcore/12.2.0`` +``4.0.2`` | ``GCCcore/12.3.0`` +``4.1.5`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/j/JupyterLab.md b/docs/version-specific/supported-software/j/JupyterLab.md index 5bb3497650..f48a17e81c 100644 --- a/docs/version-specific/supported-software/j/JupyterLab.md +++ b/docs/version-specific/supported-software/j/JupyterLab.md @@ -8,18 +8,17 @@ JupyterLab is the next-generation user interface for Project Jupyter offering al *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.5`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.2.5`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``2.2.8`` | | ``GCCcore/10.2.0`` -``3.0.16`` | | ``GCCcore/10.3.0`` -``3.1.6`` | | ``GCCcore/11.2.0`` -``3.2.8`` | | ``GCCcore/10.3.0`` -``3.5.0`` | | ``GCCcore/11.3.0`` -``4.0.3`` | | ``GCCcore/12.2.0`` -``4.0.5`` | | ``GCCcore/12.3.0`` -``4.2.0`` | | ``GCCcore/13.2.0`` +version | toolchain +--------|---------- +``2.2.8`` | ``GCCcore/10.2.0`` +``3.0.16`` | ``GCCcore/10.3.0`` +``3.1.6`` | ``GCCcore/11.2.0`` +``3.2.8`` | ``GCCcore/10.3.0`` +``3.5.0`` | ``GCCcore/11.3.0`` +``4.0.3`` | ``GCCcore/12.2.0`` +``4.0.5`` | ``GCCcore/12.3.0`` +``4.2.0`` | ``GCCcore/13.2.0`` +``4.2.5`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/j/index.md b/docs/version-specific/supported-software/j/index.md index a84fcbe641..04fe2ec883 100644 --- a/docs/version-specific/supported-software/j/index.md +++ b/docs/version-specific/supported-software/j/index.md @@ -8,24 +8,20 @@ search: + * [JACUSA2helper](JACUSA2helper.md) * [JAGS](JAGS.md) * [Jansson](Jansson.md) * [Jasmine](Jasmine.md) * [JasPer](JasPer.md) * [Java](Java.md) - * [JavaFX](JavaFX.md) * [jax](jax.md) - * [JAXFrontCE](JAXFrontCE.md) * [jbigkit](jbigkit.md) * [Jblob](Jblob.md) * [jedi](jedi.md) * [jedi-language-server](jedi-language-server.md) * [Jellyfish](Jellyfish.md) * [jemalloc](jemalloc.md) - * [jhbuild](jhbuild.md) - * [JiTCODE](JiTCODE.md) * [jiter](jiter.md) - * [jModelTest](jModelTest.md) * [Jmol](Jmol.md) * [Jorg](Jorg.md) * [joypy](joypy.md) @@ -34,10 +30,9 @@ search: * [json-fortran](json-fortran.md) * [JSON-GLib](JSON-GLib.md) * [JsonCpp](JsonCpp.md) - * [JUBE](JUBE.md) * [Judy](Judy.md) * [Julia](Julia.md) - * [JUnit](JUnit.md) + * [juliaup](juliaup.md) * [junos-eznc](junos-eznc.md) * [Jupyter-bundle](Jupyter-bundle.md) * [jupyter-collaboration](jupyter-collaboration.md) @@ -53,7 +48,6 @@ search: * [jupyterlab-lmod](jupyterlab-lmod.md) * [jupyterlmod](jupyterlmod.md) * [JupyterNotebook](JupyterNotebook.md) - * [JWM](JWM.md) * [jxrlib](jxrlib.md) diff --git a/docs/version-specific/supported-software/j/jModelTest.md b/docs/version-specific/supported-software/j/jModelTest.md deleted file mode 100644 index 3f4dd6eebf..0000000000 --- a/docs/version-specific/supported-software/j/jModelTest.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# jModelTest - -jModelTest is a tool to carry out statistical selection of best-fit models of nucleotide substitution. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1.10r20160303`` | ``-Java-1.8.0_92`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/j/jax.md b/docs/version-specific/supported-software/j/jax.md index db275fd437..16ed96b947 100644 --- a/docs/version-specific/supported-software/j/jax.md +++ b/docs/version-specific/supported-software/j/jax.md @@ -4,7 +4,7 @@ search: --- # jax -Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more +Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more *homepage*: diff --git a/docs/version-specific/supported-software/j/jbigkit.md b/docs/version-specific/supported-software/j/jbigkit.md index a38c5d6736..355d3a4286 100644 --- a/docs/version-specific/supported-software/j/jbigkit.md +++ b/docs/version-specific/supported-software/j/jbigkit.md @@ -18,10 +18,6 @@ version | toolchain ``2.1`` | ``GCCcore/12.3.0`` ``2.1`` | ``GCCcore/13.2.0`` ``2.1`` | ``GCCcore/13.3.0`` -``2.1`` | ``GCCcore/7.3.0`` -``2.1`` | ``GCCcore/8.2.0`` -``2.1`` | ``GCCcore/8.3.0`` -``2.1`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/j/jedi.md b/docs/version-specific/supported-software/j/jedi.md index 6487a53f6f..795f430587 100644 --- a/docs/version-specific/supported-software/j/jedi.md +++ b/docs/version-specific/supported-software/j/jedi.md @@ -4,14 +4,16 @@ search: --- # jedi -Jedi is a static analysis tool for Python that is typically used in IDEs/editors plugins. +Jedi - an awesome autocompletion, static analysis and refactoring library for Python. It is typically used in IDEs/editors plugins. Jedi has a focus on autocompletion and goto functionality. Other features include refactoring, code search and finding references. -*homepage*: +*homepage*: version | toolchain --------|---------- ``0.18.1`` | ``GCCcore/11.3.0`` +``0.19.0`` | ``GCCcore/12.3.0`` ``0.19.1`` | ``GCCcore/13.2.0`` +``0.19.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/j/jemalloc.md b/docs/version-specific/supported-software/j/jemalloc.md index 7f1559fe7b..3d16a22725 100644 --- a/docs/version-specific/supported-software/j/jemalloc.md +++ b/docs/version-specific/supported-software/j/jemalloc.md @@ -6,24 +6,14 @@ search: jemalloc is a general purpose malloc(3) implementation that emphasizes fragmentation avoidance and scalable concurrency support. -*homepage*: +*homepage*: version | toolchain --------|---------- -``4.1.0`` | ``intel/2016a`` -``4.2.0`` | ``foss/2016a`` -``4.2.0`` | ``intel/2016a`` -``4.2.1`` | ``intel/2016b`` -``4.5.0`` | ``intel/2017a`` -``5.0.1`` | ``GCCcore/6.4.0`` -``5.1.0`` | ``GCCcore/7.3.0`` -``5.2.0`` | ``GCCcore/8.2.0`` ``5.2.1`` | ``GCCcore/10.2.0`` ``5.2.1`` | ``GCCcore/10.3.0`` ``5.2.1`` | ``GCCcore/11.2.0`` ``5.2.1`` | ``GCCcore/11.3.0`` -``5.2.1`` | ``GCCcore/8.3.0`` -``5.2.1`` | ``GCCcore/9.3.0`` ``5.3.0`` | ``GCCcore/11.3.0`` ``5.3.0`` | ``GCCcore/12.2.0`` ``5.3.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/j/jhbuild.md b/docs/version-specific/supported-software/j/jhbuild.md deleted file mode 100644 index 73afda29ce..0000000000 --- a/docs/version-specific/supported-software/j/jhbuild.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# jhbuild - -JHBuild allows you to automatically download and compile “modules” (i.e. source code packages). Modules are listed in “module set” files, which also include dependency information so that JHBuild can discover what modules need to be built and in what order. - -*homepage*: - -version | toolchain ---------|---------- -``3.15.92`` | ``GCCcore/4.9.3`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/j/joypy.md b/docs/version-specific/supported-software/j/joypy.md index c6b6efc564..250ddd78b3 100644 --- a/docs/version-specific/supported-software/j/joypy.md +++ b/docs/version-specific/supported-software/j/joypy.md @@ -8,11 +8,10 @@ Joyplots in Python with matplotlib & pandas *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.2.2`` | ``-Python-3.7.4`` | ``intel/2019b`` -``0.2.4`` | | ``intel/2020b`` -``0.2.6`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``0.2.4`` | ``intel/2020b`` +``0.2.6`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/j/jq.md b/docs/version-specific/supported-software/j/jq.md index 4796d0a98b..57ed78a117 100644 --- a/docs/version-specific/supported-software/j/jq.md +++ b/docs/version-specific/supported-software/j/jq.md @@ -11,7 +11,6 @@ jq is a lightweight and flexible command-line JSON processor. version | toolchain --------|---------- ``1.5`` | ``GCCcore/10.2.0`` -``1.5`` | ``GCCcore/6.4.0`` ``1.6`` | ``GCCcore/11.2.0`` ``1.6`` | ``GCCcore/11.3.0`` ``1.6`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/j/json-fortran.md b/docs/version-specific/supported-software/j/json-fortran.md index 5da2333384..5950ce67de 100644 --- a/docs/version-specific/supported-software/j/json-fortran.md +++ b/docs/version-specific/supported-software/j/json-fortran.md @@ -22,6 +22,7 @@ version | toolchain ``8.5.2`` | ``GCC/13.2.0`` ``8.5.2`` | ``intel-compilers/2023.2.1`` ``9.0.2`` | ``GCC/12.3.0`` +``9.0.2`` | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/j/juliaup.md b/docs/version-specific/supported-software/j/juliaup.md new file mode 100644 index 0000000000..1e90427a9d --- /dev/null +++ b/docs/version-specific/supported-software/j/juliaup.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# juliaup + +This repository contains a cross-platform installer for the Julia programming language. + +*homepage*: + +version | toolchain +--------|---------- +``1.17.9`` | ``GCCcore/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/j/jupyter-server-proxy.md b/docs/version-specific/supported-software/j/jupyter-server-proxy.md index 2f2cf6f624..cf87c9c16f 100644 --- a/docs/version-specific/supported-software/j/jupyter-server-proxy.md +++ b/docs/version-specific/supported-software/j/jupyter-server-proxy.md @@ -4,7 +4,7 @@ search: --- # jupyter-server-proxy -Jupyter Server Proxy lets you run arbitrary external processes (such as RStudio, Shiny Server, Syncthing, PostgreSQL, Code Server, etc) alongside your notebook server and provide authenticated web access to them using a path like /rstudio next to others like /lab. Alongside the python package that provides the main functionality, the JupyterLab extension (@jupyterlab/server-proxy) provides buttons in the JupyterLab launcher window to get to RStudio for example. +Jupyter Server Proxy lets you run arbitrary external processes (such as RStudio, Shiny Server, Syncthing, PostgreSQL, Code Server, etc) alongside your notebook server and provide authenticated web access to them using a path like /rstudio next to others like /lab. Alongside the python package that provides the main functionality, the JupyterLab extension (@jupyterlab/server-proxy) provides buttons in the JupyterLab launcher window to get to RStudio for example. *homepage*: diff --git a/docs/version-specific/supported-software/j/jupyter-server.md b/docs/version-specific/supported-software/j/jupyter-server.md index 8aa0d96c42..5110427676 100644 --- a/docs/version-specific/supported-software/j/jupyter-server.md +++ b/docs/version-specific/supported-software/j/jupyter-server.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``1.21.0`` | ``GCCcore/11.3.0`` ``2.14.0`` | ``GCCcore/13.2.0`` +``2.14.2`` | ``GCCcore/13.3.0`` ``2.7.0`` | ``GCCcore/12.2.0`` ``2.7.2`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/j/jupyterlmod.md b/docs/version-specific/supported-software/j/jupyterlmod.md index a234dbd4b6..a75849590f 100644 --- a/docs/version-specific/supported-software/j/jupyterlmod.md +++ b/docs/version-specific/supported-software/j/jupyterlmod.md @@ -13,6 +13,7 @@ version | toolchain ``3.0.0`` | ``GCCcore/11.3.0`` ``4.0.3`` | ``GCCcore/11.3.0`` ``4.0.3`` | ``GCCcore/12.3.0`` +``5.2.1`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/j/jxrlib.md b/docs/version-specific/supported-software/j/jxrlib.md index 298f8ef629..33789134ad 100644 --- a/docs/version-specific/supported-software/j/jxrlib.md +++ b/docs/version-specific/supported-software/j/jxrlib.md @@ -14,6 +14,7 @@ version | toolchain ``1.1`` | ``GCCcore/10.3.0`` ``1.1`` | ``GCCcore/11.3.0`` ``1.1`` | ``GCCcore/12.3.0`` +``1.1`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/k/KAT.md b/docs/version-specific/supported-software/k/KAT.md deleted file mode 100644 index 1da18f7491..0000000000 --- a/docs/version-specific/supported-software/k/KAT.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# KAT - -The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.4.2`` | ``-Python-3.6.4`` | ``foss/2018a`` -``2.4.2`` | ``-Python-3.7.2`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/k/KITE.md b/docs/version-specific/supported-software/k/KITE.md index 2775864967..230ab2f9bd 100644 --- a/docs/version-specific/supported-software/k/KITE.md +++ b/docs/version-specific/supported-software/k/KITE.md @@ -4,7 +4,7 @@ search: --- # KITE -KITE is an open-source Python/C++ software suite for efficient real-space tight-binding (TB) simulations of electronic structure and bulk quantum transport properties of disordered systems scalable to multi billions of atomic orbitals. +KITE is an open-source Python/C++ software suite for efficient real-space tight-binding (TB) simulations of electronic structure and bulk quantum transport properties of disordered systems scalable to multi billions of atomic orbitals. *homepage*: diff --git a/docs/version-specific/supported-software/k/KMC.md b/docs/version-specific/supported-software/k/KMC.md index dca96cdd4f..75d9a19949 100644 --- a/docs/version-specific/supported-software/k/KMC.md +++ b/docs/version-specific/supported-software/k/KMC.md @@ -4,19 +4,16 @@ search: --- # KMC -KMC is a disk-based programm for counting k-mers from (possibly gzipped) FASTQ/FASTA files. +KMC is a disk-based program for counting k-mers from (possibly gzipped) FASTQ/FASTA files. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``3.1.0`` | | ``foss/2018a`` -``3.1.0`` | | ``foss/2018b`` -``3.1.1`` | ``-Python-3.7.2`` | ``GCC/8.2.0-2.31.1`` -``3.1.2rc1`` | ``-Python-3.7.4`` | ``GCC/8.3.0`` ``3.2.1`` | ``-Python-2.7.18`` | ``GCC/11.2.0`` ``3.2.1`` | | ``GCC/11.2.0`` ``3.2.2`` | | ``GCC/12.2.0`` +``3.2.4`` | | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/Assimulo.md b/docs/version-specific/supported-software/k/KMCLib.md similarity index 79% rename from docs/version-specific/supported-software/a/Assimulo.md rename to docs/version-specific/supported-software/k/KMCLib.md index f4f2b589a1..98fcc5aaba 100644 --- a/docs/version-specific/supported-software/a/Assimulo.md +++ b/docs/version-specific/supported-software/k/KMCLib.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# Assimulo +# KMCLib -Assimulo is a simulation package for solving ordinary differential equations. +KMCLib - a general framework for lattice kinetic Monte Carlo (KMC) simulations -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2.9`` | ``-Python-2.7.15`` | ``intel/2018b`` +``2.0-a2`` | ``-Python-2.7.18`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/k/KNIME.md b/docs/version-specific/supported-software/k/KNIME.md deleted file mode 100644 index 25bfd5946f..0000000000 --- a/docs/version-specific/supported-software/k/KNIME.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# KNIME - -KNIME Analytics Platform is the open source software for creating data science applications and services. KNIME stands for KoNstanz Information MinEr. - -*homepage*: - -version | toolchain ---------|---------- -``3.6.2`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/k/KWIML.md b/docs/version-specific/supported-software/k/KWIML.md deleted file mode 100644 index d969b9ab9e..0000000000 --- a/docs/version-specific/supported-software/k/KWIML.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# KWIML - -The Kitware Information Macro Library - -*homepage*: - -version | toolchain ---------|---------- -``20180201`` | ``GCCcore/6.4.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/k/Kaiju.md b/docs/version-specific/supported-software/k/Kaiju.md deleted file mode 100644 index dbcd739a44..0000000000 --- a/docs/version-specific/supported-software/k/Kaiju.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Kaiju - -Kaiju is a program for sensitive taxonomic classification of high-throughput sequencing reads from metagenomic whole genome sequencing experiments - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.5.0`` | | ``intel/2016b`` -``1.7.2`` | ``-Python-3.7.2`` | ``iimpi/2019a`` -``1.7.3`` | ``-Python-3.7.4`` | ``gompi/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/k/Kaleido.md b/docs/version-specific/supported-software/k/Kaleido.md index a2a8bbcb86..bd2c5a682a 100644 --- a/docs/version-specific/supported-software/k/Kaleido.md +++ b/docs/version-specific/supported-software/k/Kaleido.md @@ -16,6 +16,7 @@ version | toolchain ``0.2.1`` | ``GCCcore/12.2.0`` ``0.2.1`` | ``GCCcore/12.3.0`` ``0.2.1`` | ``GCCcore/13.2.0`` +``0.2.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/k/Kent_tools.md b/docs/version-specific/supported-software/k/Kent_tools.md index 94f5939098..be40fa3625 100644 --- a/docs/version-specific/supported-software/k/Kent_tools.md +++ b/docs/version-specific/supported-software/k/Kent_tools.md @@ -4,24 +4,19 @@ search: --- # Kent_tools -Kent tools: collection of tools used by the UCSC genome browser. +Kent utilities: collection of tools used by the UCSC genome browser. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``20130806`` | ``-linux.x86_64`` | ``system`` -``20171107`` | ``-linux.x86_64`` | ``system`` -``20180716`` | ``-linux.x86_64`` | ``system`` -``20190326`` | ``-linux.x86_64`` | ``system`` -``401`` | | ``gompi/2019b`` -``411`` | | ``GCC/10.2.0`` -``418`` | | ``GCC/10.3.0`` -``422`` | | ``GCC/11.2.0`` -``442`` | | ``GCC/11.3.0`` -``457`` | | ``GCC/12.2.0`` -``461`` | | ``GCC/12.2.0`` -``468`` | | ``GCC/12.3.0`` +version | toolchain +--------|---------- +``411`` | ``GCC/10.2.0`` +``418`` | ``GCC/10.3.0`` +``422`` | ``GCC/11.2.0`` +``442`` | ``GCC/11.3.0`` +``457`` | ``GCC/12.2.0`` +``461`` | ``GCC/12.2.0`` +``468`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/k/Keras.md b/docs/version-specific/supported-software/k/Keras.md index 721a3fb028..8ce545133e 100644 --- a/docs/version-specific/supported-software/k/Keras.md +++ b/docs/version-specific/supported-software/k/Keras.md @@ -4,36 +4,12 @@ search: --- # Keras -Keras is a minimalist, highly modular neural networks library, written in Python and capable of running on top of either TensorFlow or Theano. +Keras is a deep learning API written in Python, running on top of the machine learning platform TensorFlow. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.0.8`` | ``-Python-3.5.2`` | ``intel/2016b`` -``1.1.0`` | ``-Python-3.5.2`` | ``intel/2016b`` -``2.0.4`` | ``-Python-2.7.13`` | ``intel/2017a`` -``2.0.4`` | ``-Python-3.6.1`` | ``intel/2017a`` -``2.0.5`` | ``-Python-3.6.1`` | ``intel/2017a`` -``2.0.8`` | ``-Python-3.6.1`` | ``intel/2017a`` -``2.1.1`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.1.1`` | ``-Python-3.6.3`` | ``intel/2017b`` -``2.1.2`` | ``-Python-3.6.3`` | ``foss/2017b`` -``2.1.2`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.1.3`` | ``-Python-3.6.3`` | ``foss/2017b`` -``2.1.3`` | ``-Python-3.6.3`` | ``intel/2017b`` -``2.2.0`` | ``-Python-3.6.4`` | ``foss/2018a`` -``2.2.0`` | ``-Python-2.7.14`` | ``fosscuda/2017b`` -``2.2.0`` | ``-Python-3.6.3`` | ``fosscuda/2017b`` -``2.2.2`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` -``2.2.4`` | ``-Python-3.6.6`` | ``foss/2018b`` -``2.2.4`` | ``-Python-3.7.2`` | ``foss/2019a`` -``2.2.4`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` -``2.2.4`` | ``-Python-3.7.2`` | ``fosscuda/2019a`` -``2.2.4`` | ``-Python-3.6.4`` | ``intel/2018a`` -``2.3.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``2.3.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``2.3.1`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` ``2.4.3`` | | ``foss/2020b`` ``2.4.3`` | ``-TensorFlow-2.5.0`` | ``fosscuda/2020b`` ``2.4.3`` | | ``fosscuda/2020b`` diff --git a/docs/version-specific/supported-software/k/KmerGenie.md b/docs/version-specific/supported-software/k/KmerGenie.md deleted file mode 100644 index 1bd8ff7eab..0000000000 --- a/docs/version-specific/supported-software/k/KmerGenie.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# KmerGenie - -KmerGenie estimates the best k-mer length for genome de novo assembly. - -*homepage*: - -version | toolchain ---------|---------- -``1.7044`` | ``intel/2017a`` -``1.7048`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/k/Kraken.md b/docs/version-specific/supported-software/k/Kraken.md index 06c1412a52..c178210cc5 100644 --- a/docs/version-specific/supported-software/k/Kraken.md +++ b/docs/version-specific/supported-software/k/Kraken.md @@ -6,19 +6,13 @@ search: Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.5-beta`` | ``-Perl-5.22.1`` | ``foss/2016a`` -``0.10.5-beta`` | ``-Perl-5.24.0`` | ``foss/2016b`` -``1.0`` | ``-Perl-5.26.1`` | ``intel/2018a`` -``1.1`` | ``-Perl-5.28.0`` | ``foss/2018b`` -``1.1.1`` | | ``GCCcore/10.2.0`` -``1.1.1`` | | ``GCCcore/10.3.0`` -``1.1.1`` | | ``GCCcore/11.3.0`` -``1.1.1`` | ``-Perl-5.28.1`` | ``GCCcore/8.2.0`` -``1.1.1`` | | ``GCCcore/9.3.0`` +version | toolchain +--------|---------- +``1.1.1`` | ``GCCcore/10.2.0`` +``1.1.1`` | ``GCCcore/10.3.0`` +``1.1.1`` | ``GCCcore/11.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/k/Kraken2.md b/docs/version-specific/supported-software/k/Kraken2.md index 403d980a4c..a3a27d9f50 100644 --- a/docs/version-specific/supported-software/k/Kraken2.md +++ b/docs/version-specific/supported-software/k/Kraken2.md @@ -6,19 +6,15 @@ search: Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0.6-beta`` | ``-Perl-5.26.1`` | ``foss/2018a`` -``2.0.7-beta`` | ``-Perl-5.28.0`` | ``foss/2018b`` -``2.0.8-beta`` | ``-Perl-5.30.0`` | ``gompi/2019b`` -``2.0.9-beta`` | ``-Perl-5.28.0`` | ``foss/2018b`` -``2.0.9-beta`` | ``-Perl-5.30.2`` | ``gompi/2020a`` -``2.1.1`` | | ``gompi/2020b`` -``2.1.2`` | | ``gompi/2021a`` -``2.1.2`` | | ``gompi/2021b`` -``2.1.2`` | | ``gompi/2022a`` +version | toolchain +--------|---------- +``2.1.1`` | ``gompi/2020b`` +``2.1.2`` | ``gompi/2021a`` +``2.1.2`` | ``gompi/2021b`` +``2.1.2`` | ``gompi/2022a`` +``2.1.3`` | ``gompi/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/k/Kratos.md b/docs/version-specific/supported-software/k/Kratos.md deleted file mode 100644 index 048f52fcae..0000000000 --- a/docs/version-specific/supported-software/k/Kratos.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Kratos - -Kratos Multiphysics (A.K.A Kratos) is a framework for building parallel multi-disciplinary simulation software. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``6.0`` | ``-Python-3.6.4`` | ``foss/2018a`` -``6.0`` | ``-Python-3.6.4`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/k/KronaTools.md b/docs/version-specific/supported-software/k/KronaTools.md index 3045de3aea..4a3fdd6dd5 100644 --- a/docs/version-specific/supported-software/k/KronaTools.md +++ b/docs/version-specific/supported-software/k/KronaTools.md @@ -4,14 +4,12 @@ search: --- # KronaTools -Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files. +Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files. *homepage*: version | toolchain --------|---------- -``2.7`` | ``GCCcore/7.3.0`` -``2.7.1`` | ``GCCcore/8.2.0`` ``2.8`` | ``GCC/10.3.0`` ``2.8`` | ``GCCcore/10.2.0`` ``2.8.1`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/k/KyotoCabinet.md b/docs/version-specific/supported-software/k/KyotoCabinet.md index 99fa5dea21..9d5aa98107 100644 --- a/docs/version-specific/supported-software/k/KyotoCabinet.md +++ b/docs/version-specific/supported-software/k/KyotoCabinet.md @@ -6,12 +6,10 @@ search: Kyoto Cabinet is a library of routines for managing a database. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.2.77`` | ``GCCcore/7.3.0`` -``1.2.77`` | ``GCCcore/8.2.0`` ``1.2.80`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/k/index.md b/docs/version-specific/supported-software/k/index.md index 2bb4cb153b..573f393cf0 100644 --- a/docs/version-specific/supported-software/k/index.md +++ b/docs/version-specific/supported-software/k/index.md @@ -8,39 +8,30 @@ search: + * [kaggle](kaggle.md) * [KaHIP](KaHIP.md) - * [Kaiju](Kaiju.md) * [Kaleido](Kaleido.md) * [Kalign](Kalign.md) * [kallisto](kallisto.md) - * [KAT](KAT.md) * [kb-python](kb-python.md) - * [kbproto](kbproto.md) - * [kedro](kedro.md) * [Kent_tools](Kent_tools.md) * [Keras](Keras.md) * [KerasTuner](KerasTuner.md) - * [khmer](khmer.md) * [kim-api](kim-api.md) * [kineto](kineto.md) * [king](king.md) * [KITE](KITE.md) * [kma](kma.md) * [KMC](KMC.md) + * [KMCLib](KMCLib.md) * [KMCP](KMCP.md) - * [KmerGenie](KmerGenie.md) * [kneaddata](kneaddata.md) - * [KNIME](KNIME.md) - * [kpcalg](kpcalg.md) * [Kraken](Kraken.md) * [Kraken2](Kraken2.md) * [KrakenUniq](KrakenUniq.md) - * [Kratos](Kratos.md) * [krbalancing](krbalancing.md) * [KronaTools](KronaTools.md) - * [kwant](kwant.md) - * [KWIML](KWIML.md) - * [kWIP](kWIP.md) + * [kyber](kyber.md) * [KyotoCabinet](KyotoCabinet.md) diff --git a/docs/version-specific/supported-software/k/kWIP.md b/docs/version-specific/supported-software/k/kWIP.md deleted file mode 100644 index 2240b79ac7..0000000000 --- a/docs/version-specific/supported-software/k/kWIP.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# kWIP - -This software implements a de novo, alignment free measure of sample genetic dissimilarity which operates upon raw sequencing reads. It is able to calculate the genetic dissimilarity between samples without any reference genome, and without assembling one. - -*homepage*: - -version | toolchain ---------|---------- -``0.2.0`` | ``GCCcore/6.4.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/k/kaggle.md b/docs/version-specific/supported-software/k/kaggle.md new file mode 100644 index 0000000000..f61fe17a4b --- /dev/null +++ b/docs/version-specific/supported-software/k/kaggle.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# kaggle + +Official API for https://www.kaggle.com, accessible using a command line tool implemented in Python 3. + +*homepage*: + +version | toolchain +--------|---------- +``1.6.17`` | ``foss/2023b`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/k/kallisto.md b/docs/version-specific/supported-software/k/kallisto.md index ce6dad34a6..3ad62d569f 100644 --- a/docs/version-specific/supported-software/k/kallisto.md +++ b/docs/version-specific/supported-software/k/kallisto.md @@ -6,28 +6,18 @@ search: kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.42.5`` | ``foss/2016a`` -``0.43.0`` | ``intel/2016b`` -``0.43.1`` | ``foss/2016b`` -``0.43.1`` | ``intel/2017a`` -``0.43.1`` | ``intel/2017b`` -``0.44.0`` | ``foss/2016b`` -``0.44.0`` | ``intel/2018a`` -``0.45.0`` | ``foss/2018b`` -``0.45.1`` | ``foss/2019a`` -``0.46.0`` | ``intel/2019a`` -``0.46.1`` | ``foss/2019b`` -``0.46.1`` | ``iimpi/2020a`` ``0.46.1`` | ``iimpi/2020b`` ``0.46.2`` | ``foss/2020b`` ``0.48.0`` | ``gompi/2021a`` ``0.48.0`` | ``gompi/2021b`` ``0.48.0`` | ``gompi/2022a`` ``0.50.1`` | ``gompi/2022b`` +``0.51.1`` | ``gompi/2023a`` +``0.51.1`` | ``gompi/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/k/kbproto.md b/docs/version-specific/supported-software/k/kbproto.md deleted file mode 100644 index 35c45f093f..0000000000 --- a/docs/version-specific/supported-software/k/kbproto.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# kbproto - -X.org KBProto protocol headers. - -*homepage*: - -version | toolchain ---------|---------- -``1.0.7`` | ``foss/2016a`` -``1.0.7`` | ``gimkl/2.11.5`` -``1.0.7`` | ``intel/2016a`` -``1.0.7`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/k/kedro.md b/docs/version-specific/supported-software/k/kedro.md deleted file mode 100644 index b96f1c574f..0000000000 --- a/docs/version-specific/supported-software/k/kedro.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# kedro - -Kedro is an open-source Python framework that applies software engineering best-practice to data and machine-learning pipelines. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.16.5`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/k/khmer.md b/docs/version-specific/supported-software/k/khmer.md deleted file mode 100644 index b33c02e933..0000000000 --- a/docs/version-specific/supported-software/k/khmer.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# khmer - -In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.4.1`` | ``-Python-2.7.12`` | ``foss/2016b`` -``2.1.1`` | ``-Python-2.7.13`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/k/kim-api.md b/docs/version-specific/supported-software/k/kim-api.md index 038f455526..015c00718f 100644 --- a/docs/version-specific/supported-software/k/kim-api.md +++ b/docs/version-specific/supported-software/k/kim-api.md @@ -10,12 +10,6 @@ Open Knowledgebase of Interatomic Models. KIM is an API and OpenKIM is a collec version | toolchain --------|---------- -``2.1.2`` | ``foss/2019a`` -``2.1.2`` | ``intel/2019a`` -``2.1.3`` | ``foss/2019b`` -``2.1.3`` | ``foss/2020a`` -``2.1.3`` | ``intel/2019b`` -``2.1.3`` | ``intel/2020a`` ``2.2.1`` | ``GCC/10.2.0`` ``2.2.1`` | ``GCC/10.3.0`` ``2.2.1`` | ``iccifort/2020.4.304`` @@ -23,6 +17,7 @@ version | toolchain ``2.3.0`` | ``GCC/11.3.0`` ``2.3.0`` | ``GCC/12.2.0`` ``2.3.0`` | ``GCC/12.3.0`` +``2.3.0`` | ``GCC/13.2.0`` ``2.3.0`` | ``intel-compilers/2023.1.0`` diff --git a/docs/version-specific/supported-software/k/king.md b/docs/version-specific/supported-software/k/king.md index 2fe0bffa06..3830d08937 100644 --- a/docs/version-specific/supported-software/k/king.md +++ b/docs/version-specific/supported-software/k/king.md @@ -4,7 +4,7 @@ search: --- # king -KING is a toolset that makes use of high-throughput SNP data typically seen in a genome-wide association study (GWAS) or a sequencing project. Applications of KING include family relationship inference and pedigree error checking, quality control, population substructure identification, forensics, gene mapping, etc. +KING is a toolset that makes use of high-throughput SNP data typically seen in a genome-wide association study (GWAS) or a sequencing project. Applications of KING include family relationship inference and pedigree error checking, quality control, population substructure identification, forensics, gene mapping, etc. *homepage*: diff --git a/docs/version-specific/supported-software/k/kma.md b/docs/version-specific/supported-software/k/kma.md index 226f334095..2ffbbda874 100644 --- a/docs/version-specific/supported-software/k/kma.md +++ b/docs/version-specific/supported-software/k/kma.md @@ -4,13 +4,12 @@ search: --- # kma -KMA is a mapping method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend. +KMA is a mapping method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend. *homepage*: version | toolchain --------|---------- -``1.2.22`` | ``intel/2019b`` ``1.4.12a`` | ``GCC/12.2.0`` diff --git a/docs/version-specific/supported-software/k/kpcalg.md b/docs/version-specific/supported-software/k/kpcalg.md deleted file mode 100644 index 05d45a32f8..0000000000 --- a/docs/version-specific/supported-software/k/kpcalg.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# kpcalg - -Kernel PC (kPC) algorithm for causal structure learning and causal inference using graphical models. kPC is a version of PC algorithm that uses kernel based independence criteria in order to be able to deal with non-linear relationships and non-Gaussian noise. Includes pcalg: Functions for causal structure learning and causal inference using graphical models. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.1`` | ``-R-3.5.1`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/k/kwant.md b/docs/version-specific/supported-software/k/kwant.md deleted file mode 100644 index 7360763f3c..0000000000 --- a/docs/version-specific/supported-software/k/kwant.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# kwant - -Kwant is a free (open source), powerful, and easy to use Python package for numerical calculations on tight-binding models with a strong focus on quantum transport. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.4.1`` | ``-Python-3.7.2`` | ``foss/2019a`` -``1.4.1`` | ``-Python-3.7.2`` | ``intel/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/k/kyber.md b/docs/version-specific/supported-software/k/kyber.md new file mode 100644 index 0000000000..3d2769522f --- /dev/null +++ b/docs/version-specific/supported-software/k/kyber.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# kyber + +Tool to quickly make a minimalistic 600x600 pixels heatmap image of read length (log-transformed) and read accuracy. + +*homepage*: + +version | toolchain +--------|---------- +``0.4.0`` | ``GCC/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/l/LAME.md b/docs/version-specific/supported-software/l/LAME.md index 294d92eca0..d921d4c584 100644 --- a/docs/version-specific/supported-software/l/LAME.md +++ b/docs/version-specific/supported-software/l/LAME.md @@ -18,14 +18,6 @@ version | toolchain ``3.100`` | ``GCCcore/12.3.0`` ``3.100`` | ``GCCcore/13.2.0`` ``3.100`` | ``GCCcore/13.3.0`` -``3.100`` | ``GCCcore/6.4.0`` -``3.100`` | ``GCCcore/7.3.0`` -``3.100`` | ``GCCcore/8.2.0`` -``3.100`` | ``GCCcore/8.3.0`` -``3.100`` | ``GCCcore/9.3.0`` -``3.100`` | ``intel/2017b`` -``3.99.5`` | ``foss/2016b`` -``3.99.5`` | ``intel/2017a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/LAMMPS.md b/docs/version-specific/supported-software/l/LAMMPS.md index 15499e1b8a..4a74500b21 100644 --- a/docs/version-specific/supported-software/l/LAMMPS.md +++ b/docs/version-specific/supported-software/l/LAMMPS.md @@ -15,15 +15,10 @@ version | versionsuffix | toolchain ``23Jun2022`` | ``-kokkos-CUDA-11.4.1`` | ``foss/2021b`` ``23Jun2022`` | ``-kokkos`` | ``foss/2021b`` ``23Jun2022`` | ``-kokkos`` | ``foss/2022a`` +``28Oct2024`` | ``-kokkos-mace-CUDA-12.1.1`` | ``foss/2023a`` +``29Aug2024`` | ``-kokkos`` | ``foss/2023b`` ``2Aug2023_update2`` | ``-kokkos-CUDA-12.1.1`` | ``foss/2023a`` ``2Aug2023_update2`` | ``-kokkos`` | ``foss/2023a`` -``3Mar2020`` | ``-Python-3.7.4-kokkos`` | ``foss/2019b`` -``3Mar2020`` | ``-Python-3.8.2-kokkos`` | ``foss/2020a`` -``3Mar2020`` | ``-Python-3.7.4-kokkos`` | ``intel/2019b`` -``3Mar2020`` | ``-Python-3.8.2-kokkos`` | ``intel/2020a`` -``7Aug2019`` | ``-Python-3.7.4-kokkos`` | ``foss/2019b`` -``7Aug2019`` | ``-Python-3.7.4-kokkos-OCTP`` | ``intel/2019b`` -``7Aug2019`` | ``-Python-3.7.4-kokkos`` | ``intel/2019b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/LAPACK.md b/docs/version-specific/supported-software/l/LAPACK.md index 24e1715343..848d55517f 100644 --- a/docs/version-specific/supported-software/l/LAPACK.md +++ b/docs/version-specific/supported-software/l/LAPACK.md @@ -14,7 +14,6 @@ version | toolchain ``3.10.1`` | ``GCC/11.3.0`` ``3.12.0`` | ``GCC/12.3.0`` ``3.12.0`` | ``GCC/13.2.0`` -``3.8.0`` | ``GCC/7.3.0-2.30`` ``3.9.1`` | ``GCC/10.2.0`` diff --git a/docs/version-specific/supported-software/l/LAST.md b/docs/version-specific/supported-software/l/LAST.md index 77472dd112..28b20d9879 100644 --- a/docs/version-specific/supported-software/l/LAST.md +++ b/docs/version-specific/supported-software/l/LAST.md @@ -10,10 +10,7 @@ LAST finds similar regions between sequences. version | toolchain --------|---------- -``1045`` | ``intel/2019b`` ``1179`` | ``GCC/10.2.0`` -``869`` | ``intel/2017a`` -``914`` | ``intel/2017b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/LASTZ.md b/docs/version-specific/supported-software/l/LASTZ.md index 843a2b05d1..34984f67e6 100644 --- a/docs/version-specific/supported-software/l/LASTZ.md +++ b/docs/version-specific/supported-software/l/LASTZ.md @@ -4,15 +4,12 @@ search: --- # LASTZ -LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454. +LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.02.00`` | ``GCCcore/8.2.0`` -``1.02.00`` | ``foss/2016a`` -``1.04.03`` | ``foss/2019b`` ``1.04.22`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/l/LCov.md b/docs/version-specific/supported-software/l/LCov.md deleted file mode 100644 index e5f694570c..0000000000 --- a/docs/version-specific/supported-software/l/LCov.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# LCov - -LCOV - the LTP GCOV extension - -*homepage*: - -version | toolchain ---------|---------- -``1.13`` | ``GCCcore/7.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/LEMON.md b/docs/version-specific/supported-software/l/LEMON.md deleted file mode 100644 index 5344a140fd..0000000000 --- a/docs/version-specific/supported-software/l/LEMON.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# LEMON - -LEMON stands for Library for Efficient Modeling and Optimization in Networks. It is a C++ template library providing efficient implementations of common data structures and algorithms with focus on combinatorial optimization tasks connected mainly with graphs and networks. - -*homepage*: - -version | toolchain ---------|---------- -``1.3.1`` | ``GCC/8.2.0-2.31.1`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/LERC.md b/docs/version-specific/supported-software/l/LERC.md index aacd7a3391..776aff0ac8 100644 --- a/docs/version-specific/supported-software/l/LERC.md +++ b/docs/version-specific/supported-software/l/LERC.md @@ -16,6 +16,7 @@ version | toolchain ``4.0.0`` | ``GCCcore/12.2.0`` ``4.0.0`` | ``GCCcore/12.3.0`` ``4.0.0`` | ``GCCcore/13.2.0`` +``4.0.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/LIANA.md b/docs/version-specific/supported-software/l/LIANA.md index a2edeab0a7..8be8c273e3 100644 --- a/docs/version-specific/supported-software/l/LIANA.md +++ b/docs/version-specific/supported-software/l/LIANA.md @@ -4,7 +4,7 @@ search: --- # LIANA -LIANA: a LIgand-receptor ANalysis frAmework. LIANA enables the use of any combination of ligand-receptor methods and resources, and their consensus. +LIANA: a LIgand-receptor ANalysis frAmework. LIANA enables the use of any combination of ligand-receptor methods and resources, and their consensus. *homepage*: diff --git a/docs/version-specific/supported-software/l/LIBSVM-Python.md b/docs/version-specific/supported-software/l/LIBSVM-Python.md index 9b6f6509b1..87271bbf68 100644 --- a/docs/version-specific/supported-software/l/LIBSVM-Python.md +++ b/docs/version-specific/supported-software/l/LIBSVM-Python.md @@ -4,7 +4,7 @@ search: --- # LIBSVM-Python -This tool provides a simple Python interface to LIBSVM, a library for support vector machines (http://www.csie.ntu.edu.tw/~cjlin/libsvm). The interface is very easy to use as the usage is the same as that of LIBSVM. The interface is developed with the built-in Python library "ctypes". +This tool provides a simple Python interface to LIBSVM, a library for support vector machines (http://www.csie.ntu.edu.tw/~cjlin/libsvm). The interface is very easy to use as the usage is the same as that of LIBSVM. The interface is developed with the built-in Python library "ctypes". *homepage*: diff --git a/docs/version-specific/supported-software/l/LIBSVM.md b/docs/version-specific/supported-software/l/LIBSVM.md index 112645657e..13794b500a 100644 --- a/docs/version-specific/supported-software/l/LIBSVM.md +++ b/docs/version-specific/supported-software/l/LIBSVM.md @@ -6,15 +6,10 @@ search: LIBSVM is an integrated software for support vector classification, (C-SVC, nu-SVC), regression (epsilon-SVR, nu-SVR) and distribution estimation (one-class SVM). It supports multi-class classification. -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.22`` | ``intel/2016b`` -``3.22`` | ``intel/2017b`` -``3.23`` | ``foss/2018b`` -``3.23`` | ``intel/2018b`` -``3.24`` | ``GCCcore/9.3.0`` ``3.25`` | ``GCCcore/10.2.0`` ``3.25`` | ``GCCcore/10.3.0`` ``3.25`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/l/LIME.md b/docs/version-specific/supported-software/l/LIME.md new file mode 100644 index 0000000000..d5057a8402 --- /dev/null +++ b/docs/version-specific/supported-software/l/LIME.md @@ -0,0 +1,19 @@ +--- +search: + boost: 0.5 +--- +# LIME + +LIME (which can stand for Lattice QCD Interchange Message Encapsulation or more generally, Large Internet Message Encapsulation) is a simple packaging scheme for combining records containing ASCII and/or binary data. Its ancestors are the Unix cpio and tar formats and the Microsoft Corporation DIME (Direct Internet Message Encapsulation) format. It is simpler and allows record sizes up to $2^{63}$ bytes, making chunking unnecessary for the foreseeable future. Unlike tar and cpio, the records are not associated with Unix files. They are identified only by a record-type (LIME type) character string, analogous to the familiar MIME application type. The LIME software package consists of a C-language API for creating, reading, writing, and manipulating LIME files and a small set of utilities for examining, packing and unpacking LIME files. + +*homepage*: + +version | toolchain +--------|---------- +``1.3.2`` | ``GCCcore/12.3.0`` +``1.3.2`` | ``GCCcore/13.2.0`` +``1.3.2`` | ``GCCcore/13.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/l/LIQA.md b/docs/version-specific/supported-software/l/LIQA.md new file mode 100644 index 0000000000..a05dd0b1b1 --- /dev/null +++ b/docs/version-specific/supported-software/l/LIQA.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# LIQA + +LIQA (Long-read Isoform Quantification and Analysis) is an Expectation-Maximization based statistical method to quantify isoform expression and detect differential alternative splicing (DAS) events using long-read RNA-seq data. + +*homepage*: + +version | toolchain +--------|---------- +``1.3.4`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/l/LLDB.md b/docs/version-specific/supported-software/l/LLDB.md deleted file mode 100644 index 968e1caa88..0000000000 --- a/docs/version-specific/supported-software/l/LLDB.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# LLDB - -The debugger component of the LLVM project - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``11.0.0`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/LLVM.md b/docs/version-specific/supported-software/l/LLVM.md index 05e04eee5a..220843cb0b 100644 --- a/docs/version-specific/supported-software/l/LLVM.md +++ b/docs/version-specific/supported-software/l/LLVM.md @@ -10,7 +10,6 @@ The LLVM Core libraries provide a modern source- and target-independent optimiz version | versionsuffix | toolchain --------|---------------|---------- -``10.0.0`` | | ``GCCcore/8.3.0`` ``10.0.1`` | | ``GCCcore/10.2.0`` ``11.0.0`` | | ``GCCcore/10.2.0`` ``11.1.0`` | | ``GCCcore/10.3.0`` @@ -19,39 +18,11 @@ version | versionsuffix | toolchain ``14.0.3`` | | ``GCCcore/11.3.0`` ``14.0.6`` | ``-llvmlite`` | ``GCCcore/12.2.0`` ``14.0.6`` | ``-llvmlite`` | ``GCCcore/12.3.0`` +``14.0.6`` | ``-llvmlite`` | ``GCCcore/13.2.0`` ``15.0.5`` | | ``GCCcore/12.2.0`` ``16.0.6`` | | ``GCCcore/12.3.0`` ``16.0.6`` | | ``GCCcore/13.2.0`` -``18.1.8`` | | ``GCCcore/13.3.0`` -``3.7.1`` | | ``foss/2016a`` -``3.7.1`` | | ``gimkl/2.11.5`` -``3.7.1`` | | ``intel/2016a`` -``3.8.0`` | | ``foss/2016a`` -``3.8.0`` | | ``intel/2016a`` -``3.8.1`` | | ``GCCcore/4.9.3`` -``3.8.1`` | | ``foss/2016b`` -``3.8.1`` | | ``intel/2016b`` -``3.9.0`` | | ``foss/2016b`` -``3.9.0`` | | ``intel/2016b`` -``3.9.1`` | | ``foss/2017a`` -``4.0.0`` | | ``foss/2017a`` -``4.0.0`` | | ``intel/2017a`` -``4.0.1`` | | ``intel/2017a`` -``4.0.1`` | | ``intel/2017b`` -``5.0.0`` | | ``foss/2017b`` -``5.0.0`` | | ``fosscuda/2017b`` -``5.0.0`` | | ``intel/2017b`` -``5.0.0`` | | ``intelcuda/2017b`` -``5.0.1`` | | ``GCCcore/6.4.0`` -``6.0.0`` | | ``GCCcore/6.4.0`` -``6.0.0`` | | ``GCCcore/7.3.0`` -``7.0.0`` | | ``GCCcore/7.2.0`` -``7.0.0`` | | ``GCCcore/7.3.0`` -``7.0.1`` | | ``GCCcore/8.2.0`` -``8.0.1`` | | ``GCCcore/8.3.0`` -``9.0.0`` | | ``GCCcore/8.3.0`` -``9.0.1`` | | ``GCCcore/8.3.0`` -``9.0.1`` | | ``GCCcore/9.3.0`` +``18.1.8`` | ``-minimal`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/LMDB.md b/docs/version-specific/supported-software/l/LMDB.md index eea3e96b78..8bd2d21971 100644 --- a/docs/version-specific/supported-software/l/LMDB.md +++ b/docs/version-specific/supported-software/l/LMDB.md @@ -4,25 +4,19 @@ search: --- # LMDB -OpenLDAP's Lightning Memory-Mapped Database (LMDB) library. +LMDB is a fast, memory-efficient database. With memory-mapped files, it has the read performance of a pure in-memory database while retaining the persistence of standard disk-based databases. -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.9.18`` | ``foss/2016a`` -``0.9.21`` | ``GCCcore/6.4.0`` -``0.9.21`` | ``intel/2017a`` -``0.9.22`` | ``GCCcore/7.3.0`` -``0.9.23`` | ``GCCcore/8.2.0`` ``0.9.24`` | ``GCCcore/10.2.0`` -``0.9.24`` | ``GCCcore/8.3.0`` -``0.9.24`` | ``GCCcore/9.3.0`` ``0.9.28`` | ``GCCcore/10.3.0`` ``0.9.29`` | ``GCCcore/11.2.0`` ``0.9.29`` | ``GCCcore/11.3.0`` ``0.9.29`` | ``GCCcore/12.2.0`` ``0.9.31`` | ``GCCcore/12.3.0`` +``0.9.31`` | ``GCCcore/13.2.0`` ``0.9.31`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/l/LMfit.md b/docs/version-specific/supported-software/l/LMfit.md index cec8119786..eeec3788d2 100644 --- a/docs/version-specific/supported-software/l/LMfit.md +++ b/docs/version-specific/supported-software/l/LMfit.md @@ -8,19 +8,14 @@ Lmfit provides a high-level interface to non-linear optimization and curve fitti *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.9.14`` | ``-Python-2.7.15`` | ``intel/2018b`` -``0.9.9`` | ``-Python-3.6.4`` | ``intel/2018a`` -``1.0.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.0.0`` | ``-Python-3.7.4`` | ``intel/2019b`` -``1.0.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``1.0.2`` | | ``foss/2020b`` -``1.0.2`` | | ``intel/2020b`` -``1.0.3`` | | ``foss/2021a`` -``1.0.3`` | | ``foss/2022a`` -``1.0.3`` | | ``intel/2022a`` -``1.2.1`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``1.0.2`` | ``foss/2020b`` +``1.0.2`` | ``intel/2020b`` +``1.0.3`` | ``foss/2021a`` +``1.0.3`` | ``foss/2022a`` +``1.0.3`` | ``intel/2022a`` +``1.2.1`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/LOBSTER.md b/docs/version-specific/supported-software/l/LOBSTER.md new file mode 100644 index 0000000000..65d6cc3dde --- /dev/null +++ b/docs/version-specific/supported-software/l/LOBSTER.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# LOBSTER + +LOBSTER allows you to calculate projected COHP and COOP curves, and also reliable atom-projected DOS, directly based on plane-wave DFT output as given by the VASP or ABINIT or Quantum ESPRESSO packages. + +*homepage*: + +version | toolchain +--------|---------- +``5.1.1`` | ``system`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/l/LOHHLA.md b/docs/version-specific/supported-software/l/LOHHLA.md deleted file mode 100644 index d9730ad3e9..0000000000 --- a/docs/version-specific/supported-software/l/LOHHLA.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# LOHHLA - -LOHHLA, Loss Of Heterozygosity in Human Leukocyte Antigen, a computational tool to evaluate HLA loss using next-generation sequencing data. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2018.11.05`` | ``-R-3.5.1`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/LS-PrePost.md b/docs/version-specific/supported-software/l/LS-PrePost.md index 240f0c2124..8e6c1e7fd7 100644 --- a/docs/version-specific/supported-software/l/LS-PrePost.md +++ b/docs/version-specific/supported-software/l/LS-PrePost.md @@ -6,15 +6,13 @@ search: LS-PrePost is an advanced pre and post-processor that is delivered free with LS-DYNA. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.6`` | ``-centos6`` | ``system`` -``4.6`` | ``-centos7`` | ``system`` -``4.6.24`` | | ``system`` -``4.7.15`` | | ``system`` -``4.7.8`` | | ``system`` +version | toolchain +--------|---------- +``4.6.24`` | ``system`` +``4.7.15`` | ``system`` +``4.7.8`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/LSD2.md b/docs/version-specific/supported-software/l/LSD2.md index d4552d0432..99e6b3f398 100644 --- a/docs/version-specific/supported-software/l/LSD2.md +++ b/docs/version-specific/supported-software/l/LSD2.md @@ -10,7 +10,6 @@ Least-squares methods to estimate rates and dates from phylogenies version | toolchain --------|---------- -``1.9.7`` | ``GCCcore/9.3.0`` ``2.2`` | ``GCCcore/10.2.0`` ``2.3`` | ``GCCcore/10.3.0`` ``2.3`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/l/LUMPY.md b/docs/version-specific/supported-software/l/LUMPY.md index 78a9888fde..9e2e660570 100644 --- a/docs/version-specific/supported-software/l/LUMPY.md +++ b/docs/version-specific/supported-software/l/LUMPY.md @@ -10,7 +10,6 @@ A probabilistic framework for structural variant discovery. version | toolchain --------|---------- -``0.2.13`` | ``foss/2016b`` ``0.3.1`` | ``foss/2020b`` diff --git a/docs/version-specific/supported-software/l/LUSCUS.md b/docs/version-specific/supported-software/l/LUSCUS.md deleted file mode 100644 index f19f219434..0000000000 --- a/docs/version-specific/supported-software/l/LUSCUS.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# LUSCUS - -Luscus is the program for graphical display and editing of molecular systems. - -*homepage*: - -version | toolchain ---------|---------- -``0.8.6`` | ``foss/2018b`` -``0.8.6`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/LZO.md b/docs/version-specific/supported-software/l/LZO.md index 7a697eecf7..2c4fcccc06 100644 --- a/docs/version-specific/supported-software/l/LZO.md +++ b/docs/version-specific/supported-software/l/LZO.md @@ -4,14 +4,12 @@ search: --- # LZO -LZO-2.06: Portable lossless data compression library +Portable lossless data compression library -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.09`` | ``intel/2016b`` -``2.09`` | ``intel/2017b`` ``2.10`` | ``GCCcore/10.2.0`` ``2.10`` | ``GCCcore/10.3.0`` ``2.10`` | ``GCCcore/11.2.0`` @@ -20,18 +18,6 @@ version | toolchain ``2.10`` | ``GCCcore/12.3.0`` ``2.10`` | ``GCCcore/13.2.0`` ``2.10`` | ``GCCcore/13.3.0`` -``2.10`` | ``GCCcore/6.4.0`` -``2.10`` | ``GCCcore/7.3.0`` -``2.10`` | ``GCCcore/8.2.0`` -``2.10`` | ``GCCcore/8.3.0`` -``2.10`` | ``GCCcore/9.3.0`` -``2.10`` | ``foss/2016a`` -``2.10`` | ``foss/2016b`` -``2.10`` | ``foss/2017a`` -``2.10`` | ``foss/2018a`` -``2.10`` | ``foss/2018b`` -``2.10`` | ``fosscuda/2018b`` -``2.10`` | ``intel/2017a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/L_RNA_scaffolder.md b/docs/version-specific/supported-software/l/L_RNA_scaffolder.md index e7a1c97b79..fbe4bc81a9 100644 --- a/docs/version-specific/supported-software/l/L_RNA_scaffolder.md +++ b/docs/version-specific/supported-software/l/L_RNA_scaffolder.md @@ -4,14 +4,14 @@ search: --- # L_RNA_scaffolder -L_RNA_scaffolder is a novel scaffolding tool using long trancriptome reads to scaffold genome fragments +L_RNA_scaffolder is a genome scaffolding tool with long trancriptome reads -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``20141124`` | ``-Perl-5.24.0`` | ``intel/2016b`` -``20190530`` | | ``GCC/11.3.0`` +version | toolchain +--------|---------- +``20190530`` | ``GCC/11.3.0`` +``20190530`` | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/LeadIT.md b/docs/version-specific/supported-software/l/LeadIT.md deleted file mode 100644 index bac444c321..0000000000 --- a/docs/version-specific/supported-software/l/LeadIT.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# LeadIT - -Visually Informed LeadOpt - -*homepage*: - -version | toolchain ---------|---------- -``2.1.9`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/Leptonica.md b/docs/version-specific/supported-software/l/Leptonica.md index 7133638a79..d7b22b1437 100644 --- a/docs/version-specific/supported-software/l/Leptonica.md +++ b/docs/version-specific/supported-software/l/Leptonica.md @@ -10,11 +10,10 @@ Leptonica is a collection of pedagogically-oriented open source software that i version | toolchain --------|---------- -``1.77.0`` | ``GCCcore/7.3.0`` -``1.78.0`` | ``GCCcore/8.2.0`` ``1.82.0`` | ``GCCcore/10.3.0`` ``1.83.0`` | ``GCCcore/11.3.0`` ``1.84.1`` | ``GCCcore/12.3.0`` +``1.85.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/LevelDB.md b/docs/version-specific/supported-software/l/LevelDB.md index 6b81a4ca1a..058b03e709 100644 --- a/docs/version-specific/supported-software/l/LevelDB.md +++ b/docs/version-specific/supported-software/l/LevelDB.md @@ -4,19 +4,13 @@ search: --- # LevelDB -LevelDB is a fast key-value storage library written at Google that provides an ordered mapping from string keys to string values. +LevelDB is a fast key-value storage library written at Google that provides an ordered mapping from string keys to string values. *homepage*: version | toolchain --------|---------- -``1.18`` | ``foss/2016a`` -``1.18`` | ``intel/2017a`` -``1.18`` | ``intel/2017b`` -``1.20`` | ``GCCcore/7.3.0`` ``1.22`` | ``GCCcore/11.3.0`` -``1.22`` | ``GCCcore/8.2.0`` -``1.22`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/LiBis.md b/docs/version-specific/supported-software/l/LiBis.md deleted file mode 100644 index 20cb208f10..0000000000 --- a/docs/version-specific/supported-software/l/LiBis.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# LiBis - -An ultrasensitive alignment method for low input bisulfite sequencing - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20200428`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/LibLZF.md b/docs/version-specific/supported-software/l/LibLZF.md index 39122f7760..1140016439 100644 --- a/docs/version-specific/supported-software/l/LibLZF.md +++ b/docs/version-specific/supported-software/l/LibLZF.md @@ -14,6 +14,7 @@ version | toolchain ``3.6`` | ``GCCcore/10.3.0`` ``3.6`` | ``GCCcore/11.3.0`` ``3.6`` | ``GCCcore/12.3.0`` +``3.6`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/LibSoup.md b/docs/version-specific/supported-software/l/LibSoup.md index 21c616b174..b64b13c150 100644 --- a/docs/version-specific/supported-software/l/LibSoup.md +++ b/docs/version-specific/supported-software/l/LibSoup.md @@ -10,12 +10,11 @@ libsoup is an HTTP client/server library for GNOME. It uses GObjects and the gli version | toolchain --------|---------- -``2.66.1`` | ``GCCcore/8.2.0`` -``2.70.0`` | ``GCCcore/8.3.0`` ``2.72.0`` | ``GCCcore/10.2.0`` ``2.74.0`` | ``GCCcore/10.3.0`` ``3.0.7`` | ``GCC/11.2.0`` ``3.0.8`` | ``GCC/11.3.0`` +``3.6.1`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/LibTIFF.md b/docs/version-specific/supported-software/l/LibTIFF.md index 7b5daa6921..64e44e5d8d 100644 --- a/docs/version-specific/supported-software/l/LibTIFF.md +++ b/docs/version-specific/supported-software/l/LibTIFF.md @@ -6,30 +6,11 @@ search: tiff: Library and tools for reading and writing TIFF data files -*homepage*: +*homepage*: version | toolchain --------|---------- -``4.0.10`` | ``GCCcore/8.2.0`` -``4.0.10`` | ``GCCcore/8.3.0`` -``4.0.6`` | ``GCCcore/5.4.0`` -``4.0.6`` | ``foss/2016a`` -``4.0.6`` | ``foss/2016b`` -``4.0.6`` | ``intel/2016a`` -``4.0.6`` | ``intel/2016b`` -``4.0.7`` | ``foss/2016b`` -``4.0.7`` | ``intel/2017a`` -``4.0.8`` | ``intel/2017a`` -``4.0.8`` | ``intel/2017b`` -``4.0.9`` | ``GCCcore/6.4.0`` -``4.0.9`` | ``GCCcore/7.3.0`` -``4.0.9`` | ``foss/2017b`` -``4.0.9`` | ``intel/2017b`` -``4.0.9`` | ``intel/2018.01`` -``4.0.9`` | ``intel/2018b`` ``4.1.0`` | ``GCCcore/10.2.0`` -``4.1.0`` | ``GCCcore/8.3.0`` -``4.1.0`` | ``GCCcore/9.3.0`` ``4.2.0`` | ``GCCcore/10.3.0`` ``4.3.0`` | ``GCCcore/11.2.0`` ``4.3.0`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/l/LibUUID.md b/docs/version-specific/supported-software/l/LibUUID.md deleted file mode 100644 index fc8ee45237..0000000000 --- a/docs/version-specific/supported-software/l/LibUUID.md +++ /dev/null @@ -1,23 +0,0 @@ ---- -search: - boost: 0.5 ---- -# LibUUID - -Portable uuid C library - -*homepage*: - -version | toolchain ---------|---------- -``1.0.3`` | ``GCCcore/6.4.0`` -``1.0.3`` | ``GCCcore/7.3.0`` -``1.0.3`` | ``GCCcore/8.2.0`` -``1.0.3`` | ``GCCcore/8.3.0`` -``1.0.3`` | ``foss/2016a`` -``1.0.3`` | ``intel/2017a`` -``1.0.3`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/Libint.md b/docs/version-specific/supported-software/l/Libint.md index 090812e373..10625b4654 100644 --- a/docs/version-specific/supported-software/l/Libint.md +++ b/docs/version-specific/supported-software/l/Libint.md @@ -10,30 +10,10 @@ Libint library is used to evaluate the traditional (electron repulsion) and cert version | versionsuffix | toolchain --------|---------------|---------- -``1.1.4`` | | ``intel/2016a`` -``1.1.6`` | | ``GCC/8.2.0-2.31.1`` -``1.1.6`` | | ``foss/2016b`` -``1.1.6`` | | ``foss/2018a`` -``1.1.6`` | | ``foss/2020a`` ``1.1.6`` | | ``foss/2020b`` -``1.1.6`` | | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``1.1.6`` | | ``intel/2016b`` -``1.1.6`` | | ``intel/2017b`` -``1.1.6`` | | ``intel/2018a`` -``1.1.6`` | | ``intel/2018b`` -``1.1.6`` | | ``intel/2020a`` -``2.0.3`` | | ``foss/2018b`` -``2.0.3`` | | ``gompi/2019a`` -``2.0.3`` | | ``intel/2018b`` -``2.1.0`` | | ``intel/2016b`` -``2.4.2`` | | ``intel/2018a`` -``2.5.0`` | | ``gompi/2019a`` -``2.5.0`` | | ``iimpi/2019a`` ``2.6.0`` | ``-lmax-6-cp2k`` | ``GCC/10.2.0`` ``2.6.0`` | ``-lmax-6-cp2k`` | ``GCC/10.3.0`` -``2.6.0`` | ``-lmax-6-cp2k`` | ``gompi/2020a`` ``2.6.0`` | ``-lmax-6-cp2k`` | ``iccifort/2020.4.304`` -``2.6.0`` | ``-lmax-6-cp2k`` | ``iimpi/2020a`` ``2.6.0`` | ``-lmax-6-cp2k`` | ``iimpi/2021a`` ``2.7.2`` | ``-lmax-6-cp2k`` | ``GCC/11.3.0`` ``2.7.2`` | ``-lmax-6-cp2k`` | ``GCC/12.2.0`` diff --git a/docs/version-specific/supported-software/0/3to2.md b/docs/version-specific/supported-software/l/LightGBM.md similarity index 67% rename from docs/version-specific/supported-software/0/3to2.md rename to docs/version-specific/supported-software/l/LightGBM.md index a1f43f43d4..edff61da9f 100644 --- a/docs/version-specific/supported-software/0/3to2.md +++ b/docs/version-specific/supported-software/l/LightGBM.md @@ -2,17 +2,16 @@ search: boost: 0.5 --- -# 3to2 +# LightGBM -lib3to2 is a set of fixers that are intended to backport code written for Python version 3.x into Python version 2.x. +A fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning tasks. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.1.1`` | ``-Python-2.7.12`` | ``foss/2016b`` -``1.1.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.1.1`` | ``-Python-2.7.13`` | ``intel/2017a`` +``4.5.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``4.5.0`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/Lighter.md b/docs/version-specific/supported-software/l/Lighter.md index 080e82b2f3..993fb045eb 100644 --- a/docs/version-specific/supported-software/l/Lighter.md +++ b/docs/version-specific/supported-software/l/Lighter.md @@ -10,9 +10,8 @@ Fast and memory-efficient sequencing error corrector version | toolchain --------|---------- -``1.1.1`` | ``foss/2018a`` ``1.1.2`` | ``GCC/11.2.0`` -``1.1.2`` | ``foss/2018b`` +``1.1.3`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/Lightning.md b/docs/version-specific/supported-software/l/Lightning.md index 2d8dd5eabe..5bbd20b40f 100644 --- a/docs/version-specific/supported-software/l/Lightning.md +++ b/docs/version-specific/supported-software/l/Lightning.md @@ -11,6 +11,7 @@ The deep learning framework to pretrain, finetune and deploy AI models. Lightnin version | versionsuffix | toolchain --------|---------------|---------- ``2.2.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``2.2.1`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/LinBox.md b/docs/version-specific/supported-software/l/LinBox.md index d2f2b96225..ca68600418 100644 --- a/docs/version-specific/supported-software/l/LinBox.md +++ b/docs/version-specific/supported-software/l/LinBox.md @@ -6,11 +6,10 @@ search: C++ library for exact, high-performance linear algebra -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.4.0`` | ``foss/2016a`` ``1.7.0`` | ``gfbf/2022a`` ``1.7.0`` | ``gfbf/2023b`` diff --git a/docs/version-specific/supported-software/l/Lingeling.md b/docs/version-specific/supported-software/l/Lingeling.md deleted file mode 100644 index b8548d4008..0000000000 --- a/docs/version-specific/supported-software/l/Lingeling.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Lingeling - -One of the design principles of the state-of-the-art SAT solver Lingeling is to use as compact data structures as possible. These reduce memory usage, increase cache efficiency and thus improve runtime, particularly, when using multiple solver instances on multi-core machines, as in our parallel portfolio solver Plingeling and our cube and conquer solver Treengeling. - -*homepage*: - -version | toolchain ---------|---------- -``bcp`` | ``GCC/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/LittleCMS.md b/docs/version-specific/supported-software/l/LittleCMS.md index dc0b1aa0e4..f6ea267e18 100644 --- a/docs/version-specific/supported-software/l/LittleCMS.md +++ b/docs/version-specific/supported-software/l/LittleCMS.md @@ -18,19 +18,6 @@ version | toolchain ``2.15`` | ``GCCcore/12.3.0`` ``2.15`` | ``GCCcore/13.2.0`` ``2.16`` | ``GCCcore/13.3.0`` -``2.7`` | ``intel/2016a`` -``2.8`` | ``GCCcore/6.4.0`` -``2.8`` | ``foss/2016b`` -``2.8`` | ``intel/2016b`` -``2.8`` | ``intel/2017a`` -``2.9`` | ``GCCcore/6.4.0`` -``2.9`` | ``GCCcore/7.3.0`` -``2.9`` | ``GCCcore/8.2.0`` -``2.9`` | ``GCCcore/8.3.0`` -``2.9`` | ``GCCcore/9.3.0`` -``2.9`` | ``foss/2017b`` -``2.9`` | ``foss/2018a`` -``2.9`` | ``intel/2017b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/Lmod.md b/docs/version-specific/supported-software/l/Lmod.md deleted file mode 100644 index 395c4fc670..0000000000 --- a/docs/version-specific/supported-software/l/Lmod.md +++ /dev/null @@ -1,31 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Lmod - -Lmod is a Lua based module system. Modules allow for dynamic modification of a user's environment under Unix systems. See www.tacc.utexas.edu/tacc-projects/lmod for a complete description. Lmod is a new implementation that easily handles the MODULEPATH Hierarchical problem. It is drop-in replacement for TCL/C modules and reads TCL modulefiles directly. - -*homepage*: - -version | toolchain ---------|---------- -``5.2`` | ``GCC/4.8.2`` -``5.2.5`` | ``GCC/4.8.2`` -``5.3`` | ``GCC/4.8.2`` -``5.4`` | ``GCC/4.8.2`` -``5.4.2`` | ``GCC/4.8.2`` -``5.5`` | ``GCC/4.8.2`` -``5.5.1`` | ``GCC/4.8.2`` -``5.6`` | ``GCC/4.8.2`` -``5.7`` | ``GCC/4.8.2`` -``5.8`` | ``GCC/4.8.2`` -``5.8.5`` | ``GCC/4.8.2`` -``5.9`` | ``GCC/4.8.2`` -``5.9`` | ``GCC/4.8.4`` -``6.4.2`` | ``system`` -``7.3`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/LoFreq.md b/docs/version-specific/supported-software/l/LoFreq.md deleted file mode 100644 index 2b3e6df292..0000000000 --- a/docs/version-specific/supported-software/l/LoFreq.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# LoFreq - -Fast and sensitive variant calling from next-gen sequencing data - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1.2`` | ``-Python-2.7.12`` | ``intel/2016b`` -``2.1.3.1`` | ``-Python-2.7.14`` | ``foss/2017b`` -``2.1.3.1`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.1.3.1`` | ``-Python-2.7.14`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/LocARNA.md b/docs/version-specific/supported-software/l/LocARNA.md index 32b002a01a..8951f40811 100644 --- a/docs/version-specific/supported-software/l/LocARNA.md +++ b/docs/version-specific/supported-software/l/LocARNA.md @@ -8,11 +8,9 @@ LocARNA is a collection of alignment tools for the structural analysis of RNA. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.9.2`` | | ``foss/2016b`` -``1.9.2.2`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.9.2.3`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``1.9.2.3`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/Loki.md b/docs/version-specific/supported-software/l/Loki.md deleted file mode 100644 index 31ef662ad5..0000000000 --- a/docs/version-specific/supported-software/l/Loki.md +++ /dev/null @@ -1,21 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Loki - -Loki is a C++ library of designs, containing flexible implementations of common design patterns and idioms. - -*homepage*: - -version | toolchain ---------|---------- -``0.1.7`` | ``foss/2016a`` -``0.1.7`` | ``foss/2016b`` -``0.1.7`` | ``intel/2016a`` -``0.1.7`` | ``intel/2016b`` -``0.1.7`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/Longshot.md b/docs/version-specific/supported-software/l/Longshot.md index d5ca263da4..ca2f69258d 100644 --- a/docs/version-specific/supported-software/l/Longshot.md +++ b/docs/version-specific/supported-software/l/Longshot.md @@ -10,11 +10,9 @@ Longshot is a variant calling tool for diploid genomes using long error prone re version | toolchain --------|---------- -``0.3.4`` | ``GCCcore/8.2.0`` -``0.4.1`` | ``GCC/7.3.0-2.30`` -``0.4.1`` | ``GCCcore/8.3.0`` ``0.4.3`` | ``GCCcore/10.2.0`` ``0.4.5`` | ``GCCcore/11.3.0`` +``1.0.0`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/LtrDetector.md b/docs/version-specific/supported-software/l/LtrDetector.md deleted file mode 100644 index 664633ae35..0000000000 --- a/docs/version-specific/supported-software/l/LtrDetector.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# LtrDetector - -A modern tool-suite for detectinglong terminal repeat retrotransposons de-novo onthe genomic scale - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0`` | ``-Python-3.7.4`` | ``intel/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/Lua.md b/docs/version-specific/supported-software/l/Lua.md index 2c28fef4a2..56c20d2b66 100644 --- a/docs/version-specific/supported-software/l/Lua.md +++ b/docs/version-specific/supported-software/l/Lua.md @@ -6,25 +6,11 @@ search: Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping. -*homepage*: +*homepage*: version | toolchain --------|---------- -``5.1.4-5`` | ``GCC/4.8.2`` -``5.1.4-8`` | ``GCC/4.8.2`` -``5.1.4-8`` | ``GCC/4.8.4`` -``5.1.4-8`` | ``system`` -``5.1.5`` | ``GCCcore/7.3.0`` -``5.1.5`` | ``GCCcore/8.3.0`` -``5.2.4`` | ``GCCcore/6.4.0`` -``5.2.4`` | ``GCCcore/7.3.0`` -``5.3.4`` | ``GCCcore/7.2.0`` -``5.3.4`` | ``system`` ``5.3.5`` | ``GCCcore/10.2.0`` -``5.3.5`` | ``GCCcore/8.2.0`` -``5.3.5`` | ``GCCcore/8.3.0`` -``5.3.5`` | ``GCCcore/9.3.0`` -``5.3.5`` | ``system`` ``5.4.2`` | ``GCCcore/10.2.0`` ``5.4.3`` | ``GCCcore/10.3.0`` ``5.4.3`` | ``GCCcore/11.2.0`` @@ -32,6 +18,7 @@ version | toolchain ``5.4.4`` | ``GCCcore/12.2.0`` ``5.4.6`` | ``GCCcore/12.3.0`` ``5.4.6`` | ``GCCcore/13.2.0`` +``5.4.7`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/LuaJIT.md b/docs/version-specific/supported-software/l/LuaJIT.md index 71ff4c3528..95b3c01aa0 100644 --- a/docs/version-specific/supported-software/l/LuaJIT.md +++ b/docs/version-specific/supported-software/l/LuaJIT.md @@ -6,11 +6,10 @@ search: LuaJIT is a Just-In-Time Compiler (JIT) for the Lua programming language. Lua is a powerful, dynamic and light-weight programming language. It may be embedded or used as a general-purpose, stand-alone language. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.0.2`` | ``GCC/4.9.2`` ``2.1.0-beta3_20230602`` | ``GCC/11.3.0`` diff --git a/docs/version-specific/supported-software/l/LuaJIT2-OpenResty.md b/docs/version-specific/supported-software/l/LuaJIT2-OpenResty.md deleted file mode 100644 index c82e3b9179..0000000000 --- a/docs/version-specific/supported-software/l/LuaJIT2-OpenResty.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# LuaJIT2-OpenResty - -openresty/luajit2 - OpenResty's maintained branch of LuaJIT. LuaJIT is a Just-In-Time Compiler (JIT) for the Lua programming language. Lua is a powerful, dynamic and light-weight programming language. It may be embedded or used as a general-purpose, stand-alone language. - -*homepage*: - -version | toolchain ---------|---------- -``2.1-20220411`` | ``GCC/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/Lucene-Geo-Gazetteer.md b/docs/version-specific/supported-software/l/Lucene-Geo-Gazetteer.md deleted file mode 100644 index 53087c7ca7..0000000000 --- a/docs/version-specific/supported-software/l/Lucene-Geo-Gazetteer.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Lucene-Geo-Gazetteer - -A command line gazetteer built around the Geonames.org dataset, that uses the Apache Lucene library to create a searchable gazetteer. - -*homepage*: - -version | toolchain ---------|---------- -``20170718`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/index.md b/docs/version-specific/supported-software/l/index.md index 29d43f5d95..f8b77c1510 100644 --- a/docs/version-specific/supported-software/l/index.md +++ b/docs/version-specific/supported-software/l/index.md @@ -15,7 +15,6 @@ search: * [lagrangian-filtering](lagrangian-filtering.md) * [LAME](LAME.md) * [LAMMPS](LAMMPS.md) - * [lancet](lancet.md) * [LangChain](LangChain.md) * [langchain-anthropic](langchain-anthropic.md) * [langchain-mistralai](langchain-mistralai.md) @@ -28,16 +27,12 @@ search: * [LayoutParser](LayoutParser.md) * [LBFGS++](LBFGS++.md) * [lcalc](lcalc.md) - * [LCov](LCov.md) * [LDC](LDC.md) * [lDDT](lDDT.md) - * [LeadIT](LeadIT.md) * [leafcutter](leafcutter.md) * [leidenalg](leidenalg.md) - * [LEMON](LEMON.md) * [Leptonica](Leptonica.md) * [LERC](LERC.md) - * [less](less.md) * [LevelDB](LevelDB.md) * [Levenshtein](Levenshtein.md) * [lftp](lftp.md) @@ -48,20 +43,15 @@ search: * [libaed2](libaed2.md) * [libaio](libaio.md) * [libarchive](libarchive.md) - * [libav](libav.md) * [libavif](libavif.md) * [libbaseencode](libbaseencode.md) * [libBigWig](libBigWig.md) - * [libbitmask](libbitmask.md) * [libbraiding](libbraiding.md) - * [libcdms](libcdms.md) * [libcerf](libcerf.md) * [libcint](libcint.md) * [libcircle](libcircle.md) - * [libcmaes](libcmaes.md) * [libconfig](libconfig.md) * [libcotp](libcotp.md) - * [libcpuset](libcpuset.md) * [libcroco](libcroco.md) * [libctl](libctl.md) * [libdap](libdap.md) @@ -69,7 +59,6 @@ search: * [libdeflate](libdeflate.md) * [libdivsufsort](libdivsufsort.md) * [libdrm](libdrm.md) - * [libdrs](libdrs.md) * [libdwarf](libdwarf.md) * [libedit](libedit.md) * [libelf](libelf.md) @@ -83,7 +72,6 @@ search: * [libffcall](libffcall.md) * [libffi](libffi.md) * [libFLAME](libFLAME.md) - * [libfontenc](libfontenc.md) * [libfyaml](libfyaml.md) * [libgcrypt](libgcrypt.md) * [libgd](libgd.md) @@ -91,26 +79,20 @@ search: * [libGDSII](libGDSII.md) * [libgeotiff](libgeotiff.md) * [libgit2](libgit2.md) - * [libglade](libglade.md) * [libGLU](libGLU.md) * [libglvnd](libglvnd.md) * [libgpg-error](libgpg-error.md) * [libgpuarray](libgpuarray.md) * [libGridXC](libGridXC.md) - * [libgtextutils](libgtextutils.md) * [libgxps](libgxps.md) * [libhandy](libhandy.md) * [libharu](libharu.md) * [libheif](libheif.md) * [libhomfly](libhomfly.md) - * [libibmad](libibmad.md) - * [libibumad](libibumad.md) - * [libICE](libICE.md) * [libiconv](libiconv.md) * [libidn](libidn.md) * [libidn2](libidn2.md) * [Libint](Libint.md) - * [LiBis](LiBis.md) * [libjpeg-turbo](libjpeg-turbo.md) * [libjxl](libjxl.md) * [libleidenalg](libleidenalg.md) @@ -121,22 +103,17 @@ search: * [libmbd](libmbd.md) * [libMemcached](libMemcached.md) * [libmicrohttpd](libmicrohttpd.md) - * [libmo_unpack](libmo_unpack.md) * [libmypaint](libmypaint.md) * [libnsl](libnsl.md) * [libobjcryst](libobjcryst.md) * [libogg](libogg.md) * [libopus](libopus.md) - * [libosmium](libosmium.md) * [libpci](libpci.md) * [libpciaccess](libpciaccess.md) - * [libplinkio](libplinkio.md) * [libpng](libpng.md) * [libpsl](libpsl.md) * [libPSML](libPSML.md) - * [libpsortb](libpsortb.md) * [libpspio](libpspio.md) - * [libpthread-stubs](libpthread-stubs.md) * [libQGLViewer](libQGLViewer.md) * [libreadline](libreadline.md) * [libRmath](libRmath.md) @@ -144,24 +121,20 @@ search: * [librsb](librsb.md) * [librsvg](librsvg.md) * [librttopo](librttopo.md) - * [libsamplerate](libsamplerate.md) * [libSBML](libSBML.md) * [libsigc++](libsigc++.md) * [libsigsegv](libsigsegv.md) - * [libSM](libSM.md) * [libsndfile](libsndfile.md) * [libsodium](libsodium.md) * [LibSoup](LibSoup.md) * [libspatialindex](libspatialindex.md) * [libspatialite](libspatialite.md) * [libspectre](libspectre.md) - * [libssh](libssh.md) * [libStatGen](libStatGen.md) * [libsupermesh](libsupermesh.md) * [LIBSVM](LIBSVM.md) * [LIBSVM-MATLAB](LIBSVM-MATLAB.md) * [LIBSVM-Python](LIBSVM-Python.md) - * [libtar](libtar.md) * [libtasn1](libtasn1.md) * [libtecla](libtecla.md) * [LibTIFF](LibTIFF.md) @@ -170,71 +143,45 @@ search: * [libtree](libtree.md) * [libunistring](libunistring.md) * [libunwind](libunwind.md) - * [libutempter](libutempter.md) - * [LibUUID](LibUUID.md) * [libuv](libuv.md) * [libvdwxc](libvdwxc.md) + * [libvips](libvips.md) * [libvorbis](libvorbis.md) * [libvori](libvori.md) * [libWallModelledLES](libWallModelledLES.md) * [libwebp](libwebp.md) * [libwpe](libwpe.md) - * [libX11](libX11.md) - * [libXau](libXau.md) * [libxc](libxc.md) - * [libxcb](libxcb.md) - * [libXcursor](libXcursor.md) - * [libXdamage](libXdamage.md) - * [libXdmcp](libXdmcp.md) - * [libXext](libXext.md) - * [libXfixes](libXfixes.md) - * [libXfont](libXfont.md) - * [libXft](libXft.md) - * [libXi](libXi.md) - * [libXinerama](libXinerama.md) - * [libxkbcommon](libxkbcommon.md) * [libxml++](libxml++.md) * [libxml2](libxml2.md) * [libxml2-python](libxml2-python.md) - * [libXmu](libXmu.md) - * [libXp](libXp.md) - * [libXpm](libXpm.md) - * [libXrandr](libXrandr.md) - * [libXrender](libXrender.md) * [libxslt](libxslt.md) * [libxsmm](libxsmm.md) - * [libXt](libXt.md) - * [libXxf86vm](libXxf86vm.md) * [libyaml](libyaml.md) - * [libzeep](libzeep.md) + * [libyuv](libyuv.md) * [libzip](libzip.md) - * [lie_learn](lie_learn.md) * [lifelines](lifelines.md) * [Lighter](Lighter.md) + * [LightGBM](LightGBM.md) * [Lightning](Lightning.md) - * [liknorm](liknorm.md) * [likwid](likwid.md) * [lil-aretomo](lil-aretomo.md) - * [limix](limix.md) + * [LIME](LIME.md) * [LinBox](LinBox.md) * [line_profiler](line_profiler.md) - * [Lingeling](Lingeling.md) + * [LIQA](LIQA.md) * [LISFLOOD-FP](LISFLOOD-FP.md) * [lit](lit.md) * [LittleCMS](LittleCMS.md) - * [LLDB](LLDB.md) + * [llama-cpp-python](llama-cpp-python.md) + * [llama.cpp](llama.cpp.md) * [LLVM](LLVM.md) * [LMDB](LMDB.md) * [LMfit](LMfit.md) - * [Lmod](Lmod.md) * [lmoments3](lmoments3.md) * [LncLOOM](LncLOOM.md) + * [LOBSTER](LOBSTER.md) * [LocARNA](LocARNA.md) - * [LoFreq](LoFreq.md) - * [Log-Log4perl](Log-Log4perl.md) - * [logaddexp](logaddexp.md) - * [LOHHLA](LOHHLA.md) - * [Loki](Loki.md) * [longestrunsubsequence](longestrunsubsequence.md) * [longread_umi](longread_umi.md) * [Longshot](Longshot.md) @@ -250,19 +197,13 @@ search: * [lrslib](lrslib.md) * [LS-PrePost](LS-PrePost.md) * [LSD2](LSD2.md) - * [LSMS](LSMS.md) * [LTR_retriever](LTR_retriever.md) - * [LtrDetector](LtrDetector.md) * [Lua](Lua.md) * [LuaJIT](LuaJIT.md) - * [LuaJIT2-OpenResty](LuaJIT2-OpenResty.md) * [LuaRocks](LuaRocks.md) - * [Lucene-Geo-Gazetteer](Lucene-Geo-Gazetteer.md) * [LUMPY](LUMPY.md) - * [LUSCUS](LUSCUS.md) * [lwgrp](lwgrp.md) * [lxml](lxml.md) - * [lynx](lynx.md) * [lz4](lz4.md) * [LZO](LZO.md) diff --git a/docs/version-specific/supported-software/l/lancet.md b/docs/version-specific/supported-software/l/lancet.md deleted file mode 100644 index ea6663d986..0000000000 --- a/docs/version-specific/supported-software/l/lancet.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# lancet - -Lancet is a somatic variant caller (SNVs and indels) for short read data. - -*homepage*: - -version | toolchain ---------|---------- -``1.1.0`` | ``iccifort/2019.5.281`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/lavaan.md b/docs/version-specific/supported-software/l/lavaan.md index 749abd55cb..587635ca25 100644 --- a/docs/version-specific/supported-software/l/lavaan.md +++ b/docs/version-specific/supported-software/l/lavaan.md @@ -10,8 +10,6 @@ Fit a variety of latent variable models, including confirmatory factor analysis, version | versionsuffix | toolchain --------|---------------|---------- -``0.6-2`` | ``-R-3.4.4`` | ``intel/2018a`` -``0.6-4.1433`` | ``-R-3.6.0`` | ``foss/2019a`` ``0.6-9`` | ``-R-4.1.0`` | ``foss/2021a`` diff --git a/docs/version-specific/supported-software/l/leafcutter.md b/docs/version-specific/supported-software/l/leafcutter.md index 7b0fdd1d04..1918294061 100644 --- a/docs/version-specific/supported-software/l/leafcutter.md +++ b/docs/version-specific/supported-software/l/leafcutter.md @@ -4,7 +4,7 @@ search: --- # leafcutter -Leafcutter quantifies RNA splicing variation using short-read RNA-seq data. The core idea is to leverage spliced reads (reads that span an intron) to quantify (differential) intron usage across samples. The advantages of this approach include: easy detection of novel introns, modeling of more complex splicing events than exonic PSI, avoiding the challenge of isoform abundance estimation, simple, computationally efficient algorithms scaling to 100s or even 1000s of samples. For details please see our bioRxiv preprint and corresponding Nature Genetics publication. +Leafcutter quantifies RNA splicing variation using short-read RNA-seq data. The core idea is to leverage spliced reads (reads that span an intron) to quantify (differential) intron usage across samples. The advantages of this approach include: easy detection of novel introns, modeling of more complex splicing events than exonic PSI, avoiding the challenge of isoform abundance estimation, simple, computationally efficient algorithms scaling to 100s or even 1000s of samples. For details please see our bioRxiv preprint and corresponding Nature Genetics publication. *homepage*: diff --git a/docs/version-specific/supported-software/l/leidenalg.md b/docs/version-specific/supported-software/l/leidenalg.md index 486ec14c0d..599365893b 100644 --- a/docs/version-specific/supported-software/l/leidenalg.md +++ b/docs/version-specific/supported-software/l/leidenalg.md @@ -8,16 +8,15 @@ Implementation of the Leiden algorithm for various quality functions to be used *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.1`` | | ``foss/2022b`` -``0.10.2`` | | ``foss/2023a`` -``0.8.2`` | ``-Python-3.8.2`` | ``foss/2020a`` -``0.8.3`` | | ``foss/2020b`` -``0.8.3`` | | ``fosscuda/2020b`` -``0.8.7`` | | ``foss/2021a`` -``0.8.8`` | | ``foss/2021b`` -``0.9.1`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``0.10.1`` | ``foss/2022b`` +``0.10.2`` | ``foss/2023a`` +``0.8.3`` | ``foss/2020b`` +``0.8.3`` | ``fosscuda/2020b`` +``0.8.7`` | ``foss/2021a`` +``0.8.8`` | ``foss/2021b`` +``0.9.1`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/less.md b/docs/version-specific/supported-software/l/less.md deleted file mode 100644 index 488267abf6..0000000000 --- a/docs/version-specific/supported-software/l/less.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# less - -Less is a free, open-source file pager. It can be found on most versions of Linux, Unix and Mac OS, as well as on many other operating systems. - -*homepage*: - -version | toolchain ---------|---------- -``458`` | ``GCC/4.8.2`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/lftp.md b/docs/version-specific/supported-software/l/lftp.md index 2f3350f3b5..2d59d61628 100644 --- a/docs/version-specific/supported-software/l/lftp.md +++ b/docs/version-specific/supported-software/l/lftp.md @@ -4,14 +4,12 @@ search: --- # lftp -LFTP is a sophisticated ftp/http client, and a file transfer program supporting a number of network protocols. Like BASH, it has job control and uses the readline library for input. It has bookmarks, a built-in mirror command, and can transfer several files in parallel. It was designed with reliability in mind. +LFTP is a sophisticated ftp/http client, and a file transfer program supporting a number of network protocols. Like BASH, it has job control and uses the readline library for input. It has bookmarks, a built-in mirror command, and can transfer several files in parallel. It was designed with reliability in mind. -*homepage*: +*homepage*: version | toolchain --------|---------- -``4.6.4`` | ``GNU/4.9.3-2.25`` -``4.8.4`` | ``GCCcore/6.4.0`` ``4.9.2`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/l/libBigWig.md b/docs/version-specific/supported-software/l/libBigWig.md index 64ed428adb..52c5d88e5e 100644 --- a/docs/version-specific/supported-software/l/libBigWig.md +++ b/docs/version-specific/supported-software/l/libBigWig.md @@ -10,7 +10,6 @@ A C library for handling bigWig files version | toolchain --------|---------- -``0.4.4`` | ``GCCcore/8.3.0`` ``0.4.6`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/l/libFLAME.md b/docs/version-specific/supported-software/l/libFLAME.md index 0fb0f5d1ec..0322988bb3 100644 --- a/docs/version-specific/supported-software/l/libFLAME.md +++ b/docs/version-specific/supported-software/l/libFLAME.md @@ -4,18 +4,15 @@ search: --- # libFLAME -AMD fork of libFLAME. libFLAME is a portable library for dense matrix computations, providing much of the functionality present in LAPACK. +libFLAME is a portable library for dense matrix computations, providing much of the functionality present in LAPACK. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0`` | ``-amd`` | ``GCC/7.3.0-2.30`` -``2.2`` | ``-amd`` | ``GCCcore/9.3.0`` -``5.2.0`` | | ``GCC/10.3.0`` -``5.2.0`` | | ``GCCcore/10.2.0`` -``5.2.0`` | | ``GCCcore/10.3.0`` -``5.2.0`` | | ``GCCcore/9.3.0`` +version | toolchain +--------|---------- +``5.2.0`` | ``GCC/10.3.0`` +``5.2.0`` | ``GCCcore/10.2.0`` +``5.2.0`` | ``GCCcore/10.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libGDSII.md b/docs/version-specific/supported-software/l/libGDSII.md index 7b5746be8c..696bb92ee4 100644 --- a/docs/version-specific/supported-software/l/libGDSII.md +++ b/docs/version-specific/supported-software/l/libGDSII.md @@ -11,7 +11,6 @@ libGDSII is a C++ library for working with GDSII binary data files, intended pr version | toolchain --------|---------- ``0.21`` | ``GCCcore/10.2.0`` -``0.21`` | ``GCCcore/6.4.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libGLU.md b/docs/version-specific/supported-software/l/libGLU.md index 0c05592dbd..249d73802a 100644 --- a/docs/version-specific/supported-software/l/libGLU.md +++ b/docs/version-specific/supported-software/l/libGLU.md @@ -8,39 +8,16 @@ The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``9.0.0`` | | ``GCCcore/8.2.0`` -``9.0.0`` | ``-Mesa-11.2.1`` | ``foss/2016a`` -``9.0.0`` | | ``foss/2016a`` -``9.0.0`` | | ``foss/2016b`` -``9.0.0`` | | ``foss/2017a`` -``9.0.0`` | | ``foss/2017b`` -``9.0.0`` | | ``foss/2018a`` -``9.0.0`` | | ``foss/2018b`` -``9.0.0`` | | ``fosscuda/2017b`` -``9.0.0`` | | ``fosscuda/2018a`` -``9.0.0`` | | ``fosscuda/2018b`` -``9.0.0`` | | ``gimkl/2.11.5`` -``9.0.0`` | ``-Mesa-11.2.1`` | ``intel/2016a`` -``9.0.0`` | | ``intel/2016a`` -``9.0.0`` | | ``intel/2016b`` -``9.0.0`` | | ``intel/2017a`` -``9.0.0`` | | ``intel/2017b`` -``9.0.0`` | | ``intel/2018a`` -``9.0.0`` | | ``intel/2018b`` -``9.0.0`` | | ``intelcuda/2017b`` -``9.0.0`` | | ``iomkl/2018a`` -``9.0.1`` | | ``GCCcore/10.2.0`` -``9.0.1`` | | ``GCCcore/10.3.0`` -``9.0.1`` | | ``GCCcore/8.3.0`` -``9.0.1`` | | ``GCCcore/9.3.0`` -``9.0.2`` | | ``GCCcore/11.2.0`` -``9.0.2`` | | ``GCCcore/11.3.0`` -``9.0.2`` | | ``GCCcore/12.2.0`` -``9.0.3`` | | ``GCCcore/12.3.0`` -``9.0.3`` | | ``GCCcore/13.2.0`` -``9.0.3`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``9.0.1`` | ``GCCcore/10.2.0`` +``9.0.1`` | ``GCCcore/10.3.0`` +``9.0.2`` | ``GCCcore/11.2.0`` +``9.0.2`` | ``GCCcore/11.3.0`` +``9.0.2`` | ``GCCcore/12.2.0`` +``9.0.3`` | ``GCCcore/12.3.0`` +``9.0.3`` | ``GCCcore/13.2.0`` +``9.0.3`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libGridXC.md b/docs/version-specific/supported-software/l/libGridXC.md index 7319e83c4e..dee9a0a68c 100644 --- a/docs/version-specific/supported-software/l/libGridXC.md +++ b/docs/version-specific/supported-software/l/libGridXC.md @@ -4,13 +4,12 @@ search: --- # libGridXC -A library to compute the exchange and correlation energy and potential in spherical (i.e. an atom) or periodic systems. It is based on SiestaXC. +A library to compute the exchange and correlation energy and potential in spherical (i.e. atoms) or periodic systems. -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.8.5`` | ``iimpi/2019b`` ``0.9.6`` | ``gompi/2020b`` ``0.9.6`` | ``gompi/2021a`` ``0.9.6`` | ``gompi/2021b`` @@ -18,6 +17,7 @@ version | toolchain ``0.9.6`` | ``iimpi/2021a`` ``0.9.6`` | ``iimpi/2021b`` ``1.1.0`` | ``gompi/2022a`` +``2.0.2`` | ``gompi/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libICE.md b/docs/version-specific/supported-software/l/libICE.md deleted file mode 100644 index 79e1b6330b..0000000000 --- a/docs/version-specific/supported-software/l/libICE.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libICE - -X Inter-Client Exchange library for freedesktop.org - -*homepage*: - -version | toolchain ---------|---------- -``1.0.9`` | ``foss/2016a`` -``1.0.9`` | ``gimkl/2.11.5`` -``1.0.9`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libMemcached.md b/docs/version-specific/supported-software/l/libMemcached.md index 6d76b4858c..283330c7bf 100644 --- a/docs/version-specific/supported-software/l/libMemcached.md +++ b/docs/version-specific/supported-software/l/libMemcached.md @@ -11,8 +11,6 @@ libMemcached is an open source C/C++ client library and tools for the memcached version | toolchain --------|---------- ``1.0.18`` | ``GCCcore/13.2.0`` -``1.0.18`` | ``GCCcore/6.4.0`` -``1.0.18`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libPSML.md b/docs/version-specific/supported-software/l/libPSML.md index 0c17db414a..655a2ef53a 100644 --- a/docs/version-specific/supported-software/l/libPSML.md +++ b/docs/version-specific/supported-software/l/libPSML.md @@ -17,9 +17,7 @@ version | toolchain ``1.1.10`` | ``intel-compilers/2021.2.0`` ``1.1.10`` | ``intel-compilers/2021.4.0`` ``1.1.12`` | ``GCC/11.3.0`` -``1.1.7`` | ``foss/2016b`` -``1.1.7`` | ``foss/2017a`` -``1.1.8`` | ``iccifort/2019.5.281`` +``2.1.0`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libQGLViewer.md b/docs/version-specific/supported-software/l/libQGLViewer.md index e1daaa6701..758c39873d 100644 --- a/docs/version-specific/supported-software/l/libQGLViewer.md +++ b/docs/version-specific/supported-software/l/libQGLViewer.md @@ -8,16 +8,9 @@ libQGLViewer is a C++ library based on Qt that eases the creation of OpenGL 3D v *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.6.3`` | ``-Mesa-11.2.1`` | ``foss/2016a`` -``2.6.3`` | | ``foss/2016a`` -``2.6.3`` | | ``foss/2016b`` -``2.6.3`` | ``-Mesa-11.2.1`` | ``intel/2016a`` -``2.6.3`` | | ``intel/2016b`` -``2.6.4`` | | ``intel/2016b`` -``2.7.1`` | | ``intel/2018a`` -``2.8.0`` | | ``GCCcore/10.3.0`` +version | toolchain +--------|---------- +``2.8.0`` | ``GCCcore/10.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libRmath.md b/docs/version-specific/supported-software/l/libRmath.md index fa06fb893d..3bfafc3d4d 100644 --- a/docs/version-specific/supported-software/l/libRmath.md +++ b/docs/version-specific/supported-software/l/libRmath.md @@ -10,8 +10,6 @@ The routines supporting the distribution and special functions in R and a few ot version | toolchain --------|---------- -``3.6.0`` | ``foss/2018b`` -``4.0.0`` | ``GCCcore/9.3.0`` ``4.1.0`` | ``GCCcore/10.2.0`` ``4.1.2`` | ``GCCcore/11.2.0`` ``4.2.0`` | ``GCCcore/10.3.0`` diff --git a/docs/version-specific/supported-software/l/libSM.md b/docs/version-specific/supported-software/l/libSM.md deleted file mode 100644 index 02cc4d165b..0000000000 --- a/docs/version-specific/supported-software/l/libSM.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libSM - -X11 Session Management library, which allows for applications to both manage sessions, and make use of session managers to save and restore their state for later use. - -*homepage*: - -version | toolchain ---------|---------- -``1.2.2`` | ``foss/2016a`` -``1.2.2`` | ``gimkl/2.11.5`` -``1.2.2`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libStatGen.md b/docs/version-specific/supported-software/l/libStatGen.md index 0e7443d142..f7aaad36c2 100644 --- a/docs/version-specific/supported-software/l/libStatGen.md +++ b/docs/version-specific/supported-software/l/libStatGen.md @@ -11,7 +11,7 @@ Useful set of classes for creating statistical genetic programs. version | toolchain --------|---------- ``1.0.15`` | ``GCCcore/10.2.0`` -``20190330`` | ``GCCcore/6.4.0`` +``1.0.15`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libX11.md b/docs/version-specific/supported-software/l/libX11.md deleted file mode 100644 index e0b3f47832..0000000000 --- a/docs/version-specific/supported-software/l/libX11.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libX11 - -X11 client-side library - -*homepage*: - -version | toolchain ---------|---------- -``1.6.3`` | ``foss/2016a`` -``1.6.3`` | ``gimkl/2.11.5`` -``1.6.3`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libXau.md b/docs/version-specific/supported-software/l/libXau.md deleted file mode 100644 index 5361a5af60..0000000000 --- a/docs/version-specific/supported-software/l/libXau.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libXau - -The libXau package contains a library implementing the X11 Authorization Protocol. This is useful for restricting client access to the display. - -*homepage*: - -version | toolchain ---------|---------- -``1.0.8`` | ``GCCcore/6.4.0`` -``1.0.8`` | ``foss/2016a`` -``1.0.8`` | ``gimkl/2.11.5`` -``1.0.8`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libXcursor.md b/docs/version-specific/supported-software/l/libXcursor.md deleted file mode 100644 index e9fc4cc7c1..0000000000 --- a/docs/version-specific/supported-software/l/libXcursor.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libXcursor - -X Cursor management library - -*homepage*: - -version | toolchain ---------|---------- -``1.1.14`` | ``foss/2016a`` -``1.1.14`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libXdamage.md b/docs/version-specific/supported-software/l/libXdamage.md deleted file mode 100644 index 9dbed02a71..0000000000 --- a/docs/version-specific/supported-software/l/libXdamage.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libXdamage - -X Damage extension library - -*homepage*: - -version | toolchain ---------|---------- -``1.1.4`` | ``foss/2016a`` -``1.1.4`` | ``gimkl/2.11.5`` -``1.1.4`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libXdmcp.md b/docs/version-specific/supported-software/l/libXdmcp.md deleted file mode 100644 index bda47d2d8d..0000000000 --- a/docs/version-specific/supported-software/l/libXdmcp.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libXdmcp - -The libXdmcp package contains a library implementing the X Display Manager Control Protocol. This is useful for allowing clients to interact with the X Display Manager. - -*homepage*: - -version | toolchain ---------|---------- -``1.1.2`` | ``GCCcore/6.4.0`` -``1.1.2`` | ``foss/2016a`` -``1.1.2`` | ``gimkl/2.11.5`` -``1.1.2`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libXext.md b/docs/version-specific/supported-software/l/libXext.md deleted file mode 100644 index e5bae84eac..0000000000 --- a/docs/version-specific/supported-software/l/libXext.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libXext - -Common X Extensions library - -*homepage*: - -version | toolchain ---------|---------- -``1.3.3`` | ``foss/2016a`` -``1.3.3`` | ``gimkl/2.11.5`` -``1.3.3`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libXfixes.md b/docs/version-specific/supported-software/l/libXfixes.md deleted file mode 100644 index 53d7407c88..0000000000 --- a/docs/version-specific/supported-software/l/libXfixes.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libXfixes - -X Fixes extension library - -*homepage*: - -version | toolchain ---------|---------- -``5.0.1`` | ``foss/2016a`` -``5.0.1`` | ``gimkl/2.11.5`` -``5.0.1`` | ``intel/2016a`` -``5.0.2`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libXfont.md b/docs/version-specific/supported-software/l/libXfont.md deleted file mode 100644 index 5d400dc161..0000000000 --- a/docs/version-specific/supported-software/l/libXfont.md +++ /dev/null @@ -1,21 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libXfont - -X font libary - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.5.1`` | ``-freetype-2.6.3`` | ``foss/2016a`` -``1.5.1`` | | ``foss/2016a`` -``1.5.1`` | | ``gimkl/2.11.5`` -``1.5.1`` | ``-freetype-2.6.3`` | ``intel/2016a`` -``1.5.1`` | | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libXft.md b/docs/version-specific/supported-software/l/libXft.md deleted file mode 100644 index 6791f12b5b..0000000000 --- a/docs/version-specific/supported-software/l/libXft.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libXft - -X11 client-side library - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.3.2`` | ``-freetype-2.6.3`` | ``foss/2016a`` -``2.3.2`` | | ``foss/2016a`` -``2.3.2`` | ``-fontconfig-2.11.95`` | ``intel/2016a`` -``2.3.2`` | | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libXi.md b/docs/version-specific/supported-software/l/libXi.md deleted file mode 100644 index e7bc8ffe56..0000000000 --- a/docs/version-specific/supported-software/l/libXi.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libXi - -LibXi provides an X Window System client interface to the XINPUT extension to the X protocol. - -*homepage*: - -version | toolchain ---------|---------- -``1.7.6`` | ``foss/2016a`` -``1.7.6`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libXinerama.md b/docs/version-specific/supported-software/l/libXinerama.md deleted file mode 100644 index f88383fde0..0000000000 --- a/docs/version-specific/supported-software/l/libXinerama.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libXinerama - -Xinerama multiple monitor library - -*homepage*: - -version | toolchain ---------|---------- -``1.1.3`` | ``foss/2016a`` -``1.1.3`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libXmu.md b/docs/version-specific/supported-software/l/libXmu.md deleted file mode 100644 index f8dcbe0870..0000000000 --- a/docs/version-specific/supported-software/l/libXmu.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libXmu - -libXmu provides a set of miscellaneous utility convenience functions for X libraries to use. libXmuu is a lighter-weight version that does not depend on libXt or libXext - -*homepage*: - -version | toolchain ---------|---------- -``1.1.2`` | ``foss/2016a`` -``1.1.2`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libXp.md b/docs/version-specific/supported-software/l/libXp.md deleted file mode 100644 index d053bdaf93..0000000000 --- a/docs/version-specific/supported-software/l/libXp.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libXp - -libXp provides the X print library. - -*homepage*: - -version | toolchain ---------|---------- -``1.0.3`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libXpm.md b/docs/version-specific/supported-software/l/libXpm.md deleted file mode 100644 index 2a20b4f148..0000000000 --- a/docs/version-specific/supported-software/l/libXpm.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libXpm - -libXp provides the X print library. - -*homepage*: - -version | toolchain ---------|---------- -``3.5.11`` | ``foss/2016a`` -``3.5.11`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libXrandr.md b/docs/version-specific/supported-software/l/libXrandr.md deleted file mode 100644 index 28cb223449..0000000000 --- a/docs/version-specific/supported-software/l/libXrandr.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libXrandr - -X Resize, Rotate and Reflection extension library - -*homepage*: - -version | toolchain ---------|---------- -``1.5.0`` | ``foss/2016a`` -``1.5.0`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libXrender.md b/docs/version-specific/supported-software/l/libXrender.md deleted file mode 100644 index 7ea9d2ea22..0000000000 --- a/docs/version-specific/supported-software/l/libXrender.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libXrender - -X11 client-side library - -*homepage*: - -version | toolchain ---------|---------- -``0.9.9`` | ``foss/2016a`` -``0.9.9`` | ``gimkl/2.11.5`` -``0.9.9`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libXt.md b/docs/version-specific/supported-software/l/libXt.md deleted file mode 100644 index 4acb0d9e12..0000000000 --- a/docs/version-specific/supported-software/l/libXt.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libXt - -libXt provides the X Toolkit Intrinsics, an abstract widget library upon which other toolkits are based. Xt is the basis for many toolkits, including the Athena widgets (Xaw), and LessTif (a Motif implementation). - -*homepage*: - -version | toolchain ---------|---------- -``1.1.5`` | ``foss/2016a`` -``1.1.5`` | ``gimkl/2.11.5`` -``1.1.5`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libXxf86vm.md b/docs/version-specific/supported-software/l/libXxf86vm.md deleted file mode 100644 index 2bc399a221..0000000000 --- a/docs/version-specific/supported-software/l/libXxf86vm.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libXxf86vm - -X11 XFree86 video mode extension library - -*homepage*: - -version | toolchain ---------|---------- -``1.1.4`` | ``foss/2016a`` -``1.1.4`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libaec.md b/docs/version-specific/supported-software/l/libaec.md index eb49ce1cc8..84456474ff 100644 --- a/docs/version-specific/supported-software/l/libaec.md +++ b/docs/version-specific/supported-software/l/libaec.md @@ -17,6 +17,7 @@ version | toolchain ``1.0.6`` | ``GCCcore/12.2.0`` ``1.0.6`` | ``GCCcore/12.3.0`` ``1.0.6`` | ``GCCcore/13.2.0`` +``1.1.3`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libaio.md b/docs/version-specific/supported-software/l/libaio.md index fafbcf2e5f..1e1e653603 100644 --- a/docs/version-specific/supported-software/l/libaio.md +++ b/docs/version-specific/supported-software/l/libaio.md @@ -10,8 +10,6 @@ Asynchronous input/output library that uses the kernels native interface. version | toolchain --------|---------- -``0.3.111`` | ``GCCcore/8.2.0`` -``0.3.111`` | ``GCCcore/8.3.0`` ``0.3.112`` | ``GCCcore/10.2.0`` ``0.3.112`` | ``GCCcore/10.3.0`` ``0.3.112`` | ``GCCcore/11.2.0`` @@ -19,6 +17,7 @@ version | toolchain ``0.3.113`` | ``GCCcore/12.2.0`` ``0.3.113`` | ``GCCcore/12.3.0`` ``0.3.113`` | ``GCCcore/13.2.0`` +``0.3.113`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libarchive.md b/docs/version-specific/supported-software/l/libarchive.md index bac5863985..76d8638561 100644 --- a/docs/version-specific/supported-software/l/libarchive.md +++ b/docs/version-specific/supported-software/l/libarchive.md @@ -10,18 +10,16 @@ Multi-format archive and compression library version | toolchain --------|---------- -``3.4.0`` | ``GCCcore/8.2.0`` -``3.4.2`` | ``GCCcore/9.3.0`` ``3.4.3`` | ``GCCcore/10.2.0`` ``3.5.1`` | ``GCCcore/10.3.0`` ``3.5.1`` | ``GCCcore/11.2.0`` -``3.5.1`` | ``GCCcore/8.3.0`` ``3.6.1`` | ``GCCcore/11.3.0`` ``3.6.1`` | ``GCCcore/12.2.0`` ``3.6.2`` | ``GCCcore/12.3.0`` ``3.6.2`` | ``GCCcore/13.1.0`` ``3.7.2`` | ``GCCcore/13.2.0`` ``3.7.4`` | ``GCCcore/13.3.0`` +``3.7.7`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libav.md b/docs/version-specific/supported-software/l/libav.md deleted file mode 100644 index c1ebf6d772..0000000000 --- a/docs/version-specific/supported-software/l/libav.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libav - -Libav is a friendly and community-driven effort to provide its users with a set of portable, functional and high-performance libraries for dealing with multimedia formats of all sorts. - -*homepage*: - -version | toolchain ---------|---------- -``11.10`` | ``GCCcore/6.4.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libavif.md b/docs/version-specific/supported-software/l/libavif.md index 41a54987c7..193e69b15e 100644 --- a/docs/version-specific/supported-software/l/libavif.md +++ b/docs/version-specific/supported-software/l/libavif.md @@ -14,6 +14,7 @@ version | toolchain ``0.11.1`` | ``GCCcore/11.3.0`` ``0.9.0`` | ``foss/2020b`` ``1.0.4`` | ``GCCcore/12.3.0`` +``1.1.1`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libbaseencode.md b/docs/version-specific/supported-software/l/libbaseencode.md index 8f2cc21649..bc4908aafc 100644 --- a/docs/version-specific/supported-software/l/libbaseencode.md +++ b/docs/version-specific/supported-software/l/libbaseencode.md @@ -4,7 +4,7 @@ search: --- # libbaseencode -Library written in C for encoding and decoding data using base32 or base64 according to RFC-4648 +Library written in C for encoding and decoding data using base32 or base64 according to RFC-4648 *homepage*: diff --git a/docs/version-specific/supported-software/l/libbitmask.md b/docs/version-specific/supported-software/l/libbitmask.md deleted file mode 100644 index 4ebee2deef..0000000000 --- a/docs/version-specific/supported-software/l/libbitmask.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libbitmask - -libbitmask provides a convenient, powerful bitmask data type - -*homepage*: - -version | toolchain ---------|---------- -``2.0`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libcdms.md b/docs/version-specific/supported-software/l/libcdms.md deleted file mode 100644 index dff8b7c2c9..0000000000 --- a/docs/version-specific/supported-software/l/libcdms.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libcdms - -Climate Data Management System Library. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.1.2`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libcerf.md b/docs/version-specific/supported-software/l/libcerf.md index 331430c2d0..b329c748a2 100644 --- a/docs/version-specific/supported-software/l/libcerf.md +++ b/docs/version-specific/supported-software/l/libcerf.md @@ -10,27 +10,15 @@ libcerf is a self-contained numeric library that provides an efficient and accu version | toolchain --------|---------- -``1.11`` | ``GCCcore/7.3.0`` -``1.11`` | ``GCCcore/8.2.0`` -``1.13`` | ``GCCcore/8.3.0`` -``1.13`` | ``GCCcore/9.3.0`` ``1.14`` | ``GCCcore/10.2.0`` ``1.15`` | ``GCCcore/10.3.0`` ``1.17`` | ``GCCcore/10.3.0`` ``1.17`` | ``GCCcore/11.2.0`` -``1.4`` | ``foss/2016a`` -``1.4`` | ``foss/2016b`` -``1.4`` | ``intel/2016a`` -``1.5`` | ``GCCcore/5.4.0`` -``1.5`` | ``GCCcore/6.3.0`` -``1.5`` | ``GCCcore/6.4.0`` -``1.5`` | ``foss/2016b`` -``1.5`` | ``intel/2016b`` -``1.5`` | ``intel/2017a`` -``1.7`` | ``GCCcore/7.3.0`` ``2.1`` | ``GCCcore/11.3.0`` ``2.3`` | ``GCCcore/12.2.0`` ``2.3`` | ``GCCcore/12.3.0`` +``2.4`` | ``GCCcore/13.2.0`` +``2.4`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libcint.md b/docs/version-specific/supported-software/l/libcint.md index 9b87af2e43..7b8ce7d940 100644 --- a/docs/version-specific/supported-software/l/libcint.md +++ b/docs/version-specific/supported-software/l/libcint.md @@ -8,14 +8,16 @@ libcint is an open source library for analytical Gaussian integrals. *homepage*: -version | toolchain ---------|---------- -``4.4.0`` | ``foss/2020b`` -``4.4.0`` | ``foss/2021a`` -``4.4.0`` | ``gomkl/2021a`` -``5.1.6`` | ``foss/2022a`` -``5.4.0`` | ``gfbf/2023a`` -``5.5.0`` | ``gfbf/2022b`` +version | versionsuffix | toolchain +--------|---------------|---------- +``4.4.0`` | | ``foss/2020b`` +``4.4.0`` | | ``foss/2021a`` +``4.4.0`` | | ``gomkl/2021a`` +``5.1.6`` | | ``foss/2022a`` +``5.4.0`` | ``-pypzpx`` | ``gfbf/2023a`` +``5.4.0`` | | ``gfbf/2023a`` +``5.5.0`` | | ``gfbf/2022b`` +``6.1.2`` | | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libcircle.md b/docs/version-specific/supported-software/l/libcircle.md index 99ed273f7b..ab05967bfa 100644 --- a/docs/version-specific/supported-software/l/libcircle.md +++ b/docs/version-specific/supported-software/l/libcircle.md @@ -10,14 +10,10 @@ An API to provide an efficient distributed queue on a cluster. libcircle is an version | toolchain --------|---------- -``0.2.1-rc.1`` | ``gompi/2019a`` -``0.2.1-rc.1`` | ``iimpi/2019a`` -``0.3`` | ``gompi/2020a`` ``0.3`` | ``gompi/2020b`` ``0.3`` | ``gompi/2022a`` ``0.3`` | ``gompi/2023a`` ``0.3`` | ``gompi/2024a`` -``0.3`` | ``iimpi/2020a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libcmaes.md b/docs/version-specific/supported-software/l/libcmaes.md deleted file mode 100644 index b607f90749..0000000000 --- a/docs/version-specific/supported-software/l/libcmaes.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libcmaes - -libcmaes is a multithreaded C++11 library for high performance blackbox stochastic optimization using the CMA-ES algorithm for Covariance Matrix Adaptation Evolution Strategy. - -*homepage*: - -version | toolchain ---------|---------- -``0.9.5`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libconfig.md b/docs/version-specific/supported-software/l/libconfig.md index d608000a43..6e7f837ca4 100644 --- a/docs/version-specific/supported-software/l/libconfig.md +++ b/docs/version-specific/supported-software/l/libconfig.md @@ -6,13 +6,10 @@ search: Libconfig is a simple library for processing structured configuration files -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.5`` | ``intel/2016b`` -``1.7.1`` | ``GCCcore/6.4.0`` -``1.7.2`` | ``GCCcore/7.3.0`` ``1.7.3`` | ``GCCcore/10.3.0`` ``1.7.3`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/l/libcpuset.md b/docs/version-specific/supported-software/l/libcpuset.md deleted file mode 100644 index f79e16b2ef..0000000000 --- a/docs/version-specific/supported-software/l/libcpuset.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libcpuset - -libcpuset provides full access to cpuset capabilities - -*homepage*: - -version | toolchain ---------|---------- -``1.0`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libcroco.md b/docs/version-specific/supported-software/l/libcroco.md index 8b636c0b20..b962088e30 100644 --- a/docs/version-specific/supported-software/l/libcroco.md +++ b/docs/version-specific/supported-software/l/libcroco.md @@ -6,13 +6,12 @@ search: Libcroco is a standalone css2 parsing and manipulation library. -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.6.11`` | ``intel/2016a`` ``0.6.13`` | ``GCC/10.2.0`` -``0.6.13`` | ``foss/2019a`` +``0.6.13`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libctl.md b/docs/version-specific/supported-software/l/libctl.md index 78d07d45c8..8d50a80752 100644 --- a/docs/version-specific/supported-software/l/libctl.md +++ b/docs/version-specific/supported-software/l/libctl.md @@ -6,13 +6,10 @@ search: libctl is a free Guile-based library implementing flexible control files for scientific simulations. -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.2.2`` | ``foss/2016a`` -``4.0.0`` | ``intel/2020a`` -``4.1.3`` | ``GCCcore/6.4.0`` ``4.5.1`` | ``GCCcore/10.2.0`` diff --git a/docs/version-specific/supported-software/l/libdap.md b/docs/version-specific/supported-software/l/libdap.md index 2ded9b3304..fe641b38c3 100644 --- a/docs/version-specific/supported-software/l/libdap.md +++ b/docs/version-specific/supported-software/l/libdap.md @@ -4,26 +4,19 @@ search: --- # libdap -A C++ SDK which contains an implementation of DAP 2.0 and the development versions of DAP3, up to 3.4. This includes both Client- and Server-side support classes. +A C++ SDK which contains an implementation of DAP 2.0 and DAP4.0. This includes both Client- and Server-side support classes. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.18.1`` | ``-Python-2.7.11`` | ``foss/2016a`` -``3.18.1`` | | ``intel/2017a`` -``3.19.1`` | | ``GCCcore/6.4.0`` -``3.19.1`` | | ``foss/2017b`` -``3.19.1`` | | ``intel/2017b`` -``3.20.11`` | | ``GCCcore/11.3.0`` -``3.20.11`` | | ``GCCcore/12.3.0`` -``3.20.3`` | | ``GCCcore/7.3.0`` -``3.20.4`` | | ``GCCcore/8.2.0`` -``3.20.6`` | | ``GCCcore/8.3.0`` -``3.20.7`` | | ``GCCcore/10.2.0`` -``3.20.7`` | | ``GCCcore/10.3.0`` -``3.20.7`` | | ``GCCcore/9.3.0`` -``3.20.8`` | | ``GCCcore/11.2.0`` +version | toolchain +--------|---------- +``3.20.11`` | ``GCCcore/11.3.0`` +``3.20.11`` | ``GCCcore/12.3.0`` +``3.20.7`` | ``GCCcore/10.2.0`` +``3.20.7`` | ``GCCcore/10.3.0`` +``3.20.8`` | ``GCCcore/11.2.0`` +``3.21.0-131`` | ``GCCcore/13.3.0`` +``3.21.0-27`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libde265.md b/docs/version-specific/supported-software/l/libde265.md index d05238d3f8..7a43ba1b8f 100644 --- a/docs/version-specific/supported-software/l/libde265.md +++ b/docs/version-specific/supported-software/l/libde265.md @@ -10,10 +10,11 @@ libde265 is an open source implementation of the h.265 video codec version | toolchain --------|---------- -``1.0.11`` | ``GCC/11.3.0`` -``1.0.15`` | ``GCC/12.3.0`` -``1.0.8`` | ``GCC/10.3.0`` -``1.0.8`` | ``GCC/11.2.0`` +``1.0.11`` | ``GCCcore/11.3.0`` +``1.0.15`` | ``GCCcore/12.3.0`` +``1.0.15`` | ``GCCcore/13.2.0`` +``1.0.8`` | ``GCCcore/10.3.0`` +``1.0.8`` | ``GCCcore/11.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libdeflate.md b/docs/version-specific/supported-software/l/libdeflate.md index 0f68bc2fce..d85e9207cd 100644 --- a/docs/version-specific/supported-software/l/libdeflate.md +++ b/docs/version-specific/supported-software/l/libdeflate.md @@ -15,10 +15,8 @@ version | toolchain ``1.18`` | ``GCCcore/12.3.0`` ``1.19`` | ``GCCcore/13.2.0`` ``1.20`` | ``GCCcore/13.3.0`` -``1.5`` | ``GCCcore/7.3.0`` ``1.7`` | ``GCCcore/10.2.0`` ``1.7`` | ``GCCcore/10.3.0`` -``1.7`` | ``GCCcore/9.3.0`` ``1.8`` | ``GCCcore/10.3.0`` ``1.8`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/l/libdivsufsort.md b/docs/version-specific/supported-software/l/libdivsufsort.md index f58c197a9f..47830a6317 100644 --- a/docs/version-specific/supported-software/l/libdivsufsort.md +++ b/docs/version-specific/supported-software/l/libdivsufsort.md @@ -10,7 +10,7 @@ libdivsufsort is a software library that implements a lightweight suffix array version | toolchain --------|---------- -``2.0.1`` | ``foss/2018b`` +``2.0.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libdrm.md b/docs/version-specific/supported-software/l/libdrm.md index ac77bddf3f..42aed220f8 100644 --- a/docs/version-specific/supported-software/l/libdrm.md +++ b/docs/version-specific/supported-software/l/libdrm.md @@ -10,7 +10,6 @@ Direct Rendering Manager runtime library. version | toolchain --------|---------- -``2.4.100`` | ``GCCcore/9.3.0`` ``2.4.102`` | ``GCCcore/10.2.0`` ``2.4.106`` | ``GCCcore/10.3.0`` ``2.4.107`` | ``GCCcore/11.2.0`` @@ -19,21 +18,6 @@ version | toolchain ``2.4.115`` | ``GCCcore/12.3.0`` ``2.4.117`` | ``GCCcore/13.2.0`` ``2.4.122`` | ``GCCcore/13.3.0`` -``2.4.67`` | ``foss/2016a`` -``2.4.67`` | ``gimkl/2.11.5`` -``2.4.67`` | ``intel/2016a`` -``2.4.68`` | ``foss/2016a`` -``2.4.68`` | ``intel/2016a`` -``2.4.70`` | ``GCCcore/5.4.0`` -``2.4.70`` | ``foss/2016b`` -``2.4.70`` | ``intel/2016b`` -``2.4.76`` | ``GCCcore/6.3.0`` -``2.4.76`` | ``intel/2017a`` -``2.4.88`` | ``GCCcore/6.4.0`` -``2.4.91`` | ``GCCcore/6.4.0`` -``2.4.92`` | ``GCCcore/7.3.0`` -``2.4.97`` | ``GCCcore/8.2.0`` -``2.4.99`` | ``GCCcore/8.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libdrs.md b/docs/version-specific/supported-software/l/libdrs.md deleted file mode 100644 index 0b372d0356..0000000000 --- a/docs/version-specific/supported-software/l/libdrs.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libdrs - -PCMDI's old DRS format implementation - -*homepage*: - -version | toolchain ---------|---------- -``3.1.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libdwarf.md b/docs/version-specific/supported-software/l/libdwarf.md index 4000ffe929..b40c72951a 100644 --- a/docs/version-specific/supported-software/l/libdwarf.md +++ b/docs/version-specific/supported-software/l/libdwarf.md @@ -14,11 +14,6 @@ version | toolchain ``0.4.1`` | ``GCCcore/11.3.0`` ``0.7.0`` | ``GCCcore/12.3.0`` ``0.9.2`` | ``GCCcore/13.2.0`` -``20140805`` | ``GCC/4.9.2`` -``20150310`` | ``GCC/4.9.2`` -``20150310`` | ``GCCcore/5.4.0`` -``20150310`` | ``GCCcore/6.3.0`` -``20190529`` | ``GCCcore/8.2.0`` ``20201201`` | ``GCCcore/10.2.0`` ``20210305`` | ``GCCcore/10.3.0`` ``20210528`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/l/libedit.md b/docs/version-specific/supported-software/l/libedit.md index 376045f58f..662e0f9874 100644 --- a/docs/version-specific/supported-software/l/libedit.md +++ b/docs/version-specific/supported-software/l/libedit.md @@ -6,14 +6,11 @@ search: This BSD-style licensed command line editor library provides generic line editing, history, and tokenization functions, similar to those found in GNU Readline. -*homepage*: +*homepage*: version | toolchain --------|---------- -``20150325`` | ``GNU/4.9.3-2.25`` -``20180525`` | ``GCCcore/6.4.0`` ``20191231`` | ``GCCcore/12.3.0`` -``20191231`` | ``GCCcore/9.3.0`` ``20210910`` | ``GCCcore/10.3.0`` ``20210910`` | ``GCCcore/11.2.0`` ``20240517`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/l/libelf.md b/docs/version-specific/supported-software/l/libelf.md index 347a2fcfab..47734624e7 100644 --- a/docs/version-specific/supported-software/l/libelf.md +++ b/docs/version-specific/supported-software/l/libelf.md @@ -6,20 +6,14 @@ search: libelf is a free ELF object file access library -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.8.13`` | ``GCC/4.8.3`` -``0.8.13`` | ``GCC/4.9.2`` ``0.8.13`` | ``GCCcore/10.2.0`` ``0.8.13`` | ``GCCcore/10.3.0`` ``0.8.13`` | ``GCCcore/11.2.0`` ``0.8.13`` | ``GCCcore/11.3.0`` -``0.8.13`` | ``GCCcore/5.4.0`` -``0.8.13`` | ``GCCcore/6.3.0`` -``0.8.13`` | ``GCCcore/8.2.0`` -``0.8.13`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libepoxy.md b/docs/version-specific/supported-software/l/libepoxy.md index c0c484f6ff..6c97a1e860 100644 --- a/docs/version-specific/supported-software/l/libepoxy.md +++ b/docs/version-specific/supported-software/l/libepoxy.md @@ -14,12 +14,8 @@ version | toolchain ``1.5.10`` | ``GCCcore/12.2.0`` ``1.5.10`` | ``GCCcore/12.3.0`` ``1.5.10`` | ``GCCcore/13.2.0`` -``1.5.2`` | ``foss/2018a`` -``1.5.3`` | ``GCCcore/8.2.0`` -``1.5.3`` | ``fosscuda/2018b`` +``1.5.10`` | ``GCCcore/13.3.0`` ``1.5.4`` | ``GCCcore/10.2.0`` -``1.5.4`` | ``GCCcore/8.3.0`` -``1.5.4`` | ``GCCcore/9.3.0`` ``1.5.8`` | ``GCCcore/10.3.0`` ``1.5.8`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/l/libev.md b/docs/version-specific/supported-software/l/libev.md index c989d034d7..27ed8507ea 100644 --- a/docs/version-specific/supported-software/l/libev.md +++ b/docs/version-specific/supported-software/l/libev.md @@ -4,7 +4,7 @@ search: --- # libev -A full-featured and high-performance (see benchmark) event loop that is loosely modelled after libevent, but without its limitations and bugs. It is used in GNU Virtual Private Ethernet, rxvt-unicode, auditd, the Deliantra MORPG Server and Client, and many other programs. +A full-featured and high-performance (see benchmark) event loop that is loosely modelled after libevent, but without its limitations and bugs. It is used in GNU Virtual Private Ethernet, rxvt-unicode, auditd, the Deliantra MORPG Server and Client, and many other programs. *homepage*: diff --git a/docs/version-specific/supported-software/l/libevent.md b/docs/version-specific/supported-software/l/libevent.md index 84a7dcf7cf..0a6abc2651 100644 --- a/docs/version-specific/supported-software/l/libevent.md +++ b/docs/version-specific/supported-software/l/libevent.md @@ -4,20 +4,12 @@ search: --- # libevent -The libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts. +The libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.0.22`` | ``GCC/4.9.2`` -``2.0.22`` | ``GCC/5.4.0-2.26`` -``2.0.22`` | ``GCCcore/4.9.3`` -``2.0.22`` | ``GNU/4.9.3-2.25`` -``2.1.11`` | ``GCCcore/7.2.0`` -``2.1.11`` | ``GCCcore/7.3.0`` -``2.1.11`` | ``GCCcore/8.3.0`` -``2.1.11`` | ``GCCcore/9.3.0`` ``2.1.12`` | ``GCCcore/10.2.0`` ``2.1.12`` | ``GCCcore/10.3.0`` ``2.1.12`` | ``GCCcore/11.2.0`` @@ -26,13 +18,8 @@ version | toolchain ``2.1.12`` | ``GCCcore/12.3.0`` ``2.1.12`` | ``GCCcore/13.2.0`` ``2.1.12`` | ``GCCcore/13.3.0`` +``2.1.12`` | ``GCCcore/14.2.0`` ``2.1.12`` | ``system`` -``2.1.8`` | ``GCCcore/6.4.0`` -``2.1.8`` | ``GCCcore/7.2.0`` -``2.1.8`` | ``GCCcore/7.3.0`` -``2.1.8`` | ``GCCcore/8.2.0`` -``2.1.8`` | ``GCCcore/8.3.0`` -``2.1.8`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libfabric.md b/docs/version-specific/supported-software/l/libfabric.md index c2b6ff7bca..52e4d00180 100644 --- a/docs/version-specific/supported-software/l/libfabric.md +++ b/docs/version-specific/supported-software/l/libfabric.md @@ -10,9 +10,7 @@ Libfabric is a core component of OFI. It is the library that defines and exports version | toolchain --------|---------- -``1.10.1`` | ``GCCcore/9.3.0`` ``1.11.0`` | ``GCCcore/10.2.0`` -``1.11.0`` | ``GCCcore/9.3.0`` ``1.12.1`` | ``GCCcore/10.3.0`` ``1.13.0`` | ``GCCcore/11.2.0`` ``1.13.1`` | ``GCCcore/11.2.0`` @@ -22,7 +20,7 @@ version | toolchain ``1.18.0`` | ``GCCcore/12.3.0`` ``1.19.0`` | ``GCCcore/13.2.0`` ``1.21.0`` | ``GCCcore/13.3.0`` -``1.9.1`` | ``GCCcore/9.3.0`` +``2.0.0`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libfdf.md b/docs/version-specific/supported-software/l/libfdf.md index 1dce064001..1d43ece204 100644 --- a/docs/version-specific/supported-software/l/libfdf.md +++ b/docs/version-specific/supported-software/l/libfdf.md @@ -17,6 +17,7 @@ version | versionsuffix | toolchain ``0.2.2`` | ``-serial`` | ``intel-compilers/2021.2.0`` ``0.2.2`` | ``-serial`` | ``intel-compilers/2021.4.0`` ``0.5.0`` | | ``GCC/11.3.0`` +``0.5.1`` | | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libffcall.md b/docs/version-specific/supported-software/l/libffcall.md index 748c0337b3..d05acb5b17 100644 --- a/docs/version-specific/supported-software/l/libffcall.md +++ b/docs/version-specific/supported-software/l/libffcall.md @@ -10,9 +10,6 @@ GNU Libffcall is a collection of four libraries which can be used to build fore version | toolchain --------|---------- -``1.13`` | ``GCCcore/6.4.0`` -``2.2`` | ``GCCcore/8.3.0`` -``2.2`` | ``GCCcore/9.3.0`` ``2.4`` | ``GCCcore/10.2.0`` diff --git a/docs/version-specific/supported-software/l/libffi.md b/docs/version-specific/supported-software/l/libffi.md index 5ec095d72d..4fd7d39a3d 100644 --- a/docs/version-specific/supported-software/l/libffi.md +++ b/docs/version-specific/supported-software/l/libffi.md @@ -4,32 +4,14 @@ search: --- # libffi -The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time. +The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time. -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.2.1`` | ``GCC/4.9.2`` -``3.2.1`` | ``GCC/4.9.3-2.25`` -``3.2.1`` | ``GCC/5.4.0-2.26`` -``3.2.1`` | ``GCCcore/5.4.0`` -``3.2.1`` | ``GCCcore/6.3.0`` -``3.2.1`` | ``GCCcore/6.4.0`` -``3.2.1`` | ``GCCcore/7.3.0`` -``3.2.1`` | ``GCCcore/8.2.0`` -``3.2.1`` | ``GCCcore/8.3.0`` -``3.2.1`` | ``GNU/4.9.3-2.25`` -``3.2.1`` | ``foss/2016.04`` -``3.2.1`` | ``foss/2016a`` -``3.2.1`` | ``foss/2016b`` -``3.2.1`` | ``gimkl/2.11.5`` -``3.2.1`` | ``intel/2016a`` -``3.2.1`` | ``intel/2016b`` -``3.2.1`` | ``system`` ``3.3`` | ``GCCcore/10.2.0`` ``3.3`` | ``GCCcore/10.3.0`` -``3.3`` | ``GCCcore/9.3.0`` ``3.4.2`` | ``GCCcore/11.2.0`` ``3.4.2`` | ``GCCcore/11.3.0`` ``3.4.4`` | ``GCCcore/12.2.0`` @@ -37,6 +19,8 @@ version | toolchain ``3.4.4`` | ``GCCcore/13.1.0`` ``3.4.4`` | ``GCCcore/13.2.0`` ``3.4.5`` | ``GCCcore/13.3.0`` +``3.4.5`` | ``GCCcore/14.2.0`` +``3.4.5`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libfontenc.md b/docs/version-specific/supported-software/l/libfontenc.md deleted file mode 100644 index e83f9f827d..0000000000 --- a/docs/version-specific/supported-software/l/libfontenc.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libfontenc - -X11 font encoding library - -*homepage*: - -version | toolchain ---------|---------- -``1.1.3`` | ``foss/2016a`` -``1.1.3`` | ``gimkl/2.11.5`` -``1.1.3`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libgcrypt.md b/docs/version-specific/supported-software/l/libgcrypt.md index b9ee06d8f0..cb191d73f1 100644 --- a/docs/version-specific/supported-software/l/libgcrypt.md +++ b/docs/version-specific/supported-software/l/libgcrypt.md @@ -12,10 +12,6 @@ version | toolchain --------|---------- ``1.10.1`` | ``GCCcore/11.3.0`` ``1.10.3`` | ``GCCcore/12.3.0`` -``1.6.5`` | ``intel/2016a`` -``1.8.4`` | ``GCCcore/7.3.0`` -``1.8.4`` | ``GCCcore/8.2.0`` -``1.8.5`` | ``GCCcore/8.3.0`` ``1.9.2`` | ``GCCcore/10.2.0`` ``1.9.2`` | ``GCCcore/10.3.0`` ``1.9.3`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/l/libgd.md b/docs/version-specific/supported-software/l/libgd.md index 0d4fe9b7fe..eef86b6ed5 100644 --- a/docs/version-specific/supported-software/l/libgd.md +++ b/docs/version-specific/supported-software/l/libgd.md @@ -6,31 +6,18 @@ search: GD is an open source code library for the dynamic creation of images by programmers. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.1.1`` | ``foss/2016a`` -``2.1.1`` | ``intel/2016a`` -``2.2.3`` | ``foss/2016b`` -``2.2.3`` | ``intel/2016b`` -``2.2.4`` | ``GCCcore/6.4.0`` -``2.2.4`` | ``foss/2016b`` -``2.2.4`` | ``intel/2017a`` -``2.2.5`` | ``GCCcore/6.4.0`` -``2.2.5`` | ``GCCcore/7.3.0`` -``2.2.5`` | ``GCCcore/8.2.0`` -``2.2.5`` | ``GCCcore/8.3.0`` -``2.2.5`` | ``intel/2017b`` -``2.2.5`` | ``intel/2018a`` ``2.3.0`` | ``GCCcore/10.2.0`` -``2.3.0`` | ``GCCcore/9.3.0`` ``2.3.1`` | ``GCCcore/10.3.0`` ``2.3.3`` | ``GCCcore/11.2.0`` ``2.3.3`` | ``GCCcore/11.3.0`` ``2.3.3`` | ``GCCcore/12.2.0`` ``2.3.3`` | ``GCCcore/12.3.0`` ``2.3.3`` | ``GCCcore/13.2.0`` +``2.3.3`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libgeotiff.md b/docs/version-specific/supported-software/l/libgeotiff.md index eb4997a05a..416db6eb7c 100644 --- a/docs/version-specific/supported-software/l/libgeotiff.md +++ b/docs/version-specific/supported-software/l/libgeotiff.md @@ -10,12 +10,6 @@ Library for reading and writing coordinate system information from/to GeoTIFF fi version | toolchain --------|---------- -``1.4.2`` | ``foss/2018a`` -``1.4.2`` | ``foss/2018b`` -``1.4.2`` | ``intel/2018b`` -``1.5.1`` | ``GCCcore/8.2.0`` -``1.5.1`` | ``GCCcore/8.3.0`` -``1.5.1`` | ``GCCcore/9.3.0`` ``1.6.0`` | ``GCCcore/10.2.0`` ``1.6.0`` | ``GCCcore/10.3.0`` ``1.7.0`` | ``GCCcore/11.2.0`` @@ -23,6 +17,7 @@ version | toolchain ``1.7.1`` | ``GCCcore/12.2.0`` ``1.7.1`` | ``GCCcore/12.3.0`` ``1.7.3`` | ``GCCcore/13.2.0`` +``1.7.3`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libgit2.md b/docs/version-specific/supported-software/l/libgit2.md index 9a5eea4dbe..34b6aebc33 100644 --- a/docs/version-specific/supported-software/l/libgit2.md +++ b/docs/version-specific/supported-software/l/libgit2.md @@ -10,10 +10,8 @@ libgit2 is a portable, pure C implementation of the Git core methods provided as version | toolchain --------|---------- -``1.0.0`` | ``GCCcore/8.3.0`` ``1.1.0`` | ``GCCcore/10.2.0`` ``1.1.0`` | ``GCCcore/10.3.0`` -``1.1.0`` | ``GCCcore/9.3.0`` ``1.1.1`` | ``GCCcore/11.2.0`` ``1.4.3`` | ``GCCcore/11.3.0`` ``1.5.0`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/l/libglade.md b/docs/version-specific/supported-software/l/libglade.md deleted file mode 100644 index 30eb22c566..0000000000 --- a/docs/version-specific/supported-software/l/libglade.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libglade - -Libglade is a library for constructing user interfaces dynamically from XML descriptions. - -*homepage*: - -version | toolchain ---------|---------- -``2.6.4`` | ``foss/2018b`` -``2.6.4`` | ``intel/2016a`` -``2.6.4`` | ``intel/2017b`` -``2.6.4`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libglvnd.md b/docs/version-specific/supported-software/l/libglvnd.md index 9d712f5942..d82c6c07da 100644 --- a/docs/version-specific/supported-software/l/libglvnd.md +++ b/docs/version-specific/supported-software/l/libglvnd.md @@ -6,13 +6,10 @@ search: libglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.2.0`` | ``GCCcore/8.2.0`` -``1.2.0`` | ``GCCcore/8.3.0`` -``1.2.0`` | ``GCCcore/9.3.0`` ``1.3.2`` | ``GCCcore/10.2.0`` ``1.3.3`` | ``GCCcore/10.3.0`` ``1.3.3`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/l/libgpg-error.md b/docs/version-specific/supported-software/l/libgpg-error.md index 6b5e5d8985..02aac01540 100644 --- a/docs/version-specific/supported-software/l/libgpg-error.md +++ b/docs/version-specific/supported-software/l/libgpg-error.md @@ -10,10 +10,6 @@ Libgpg-error is a small library that defines common error values for all GnuPG c version | toolchain --------|---------- -``1.21`` | ``intel/2016a`` -``1.35`` | ``GCCcore/7.3.0`` -``1.36`` | ``GCCcore/8.2.0`` -``1.38`` | ``GCCcore/8.3.0`` ``1.41`` | ``GCCcore/10.2.0`` ``1.42`` | ``GCCcore/10.3.0`` ``1.42`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/l/libgpuarray.md b/docs/version-specific/supported-software/l/libgpuarray.md index 0557ee1cf0..49640e4dda 100644 --- a/docs/version-specific/supported-software/l/libgpuarray.md +++ b/docs/version-specific/supported-software/l/libgpuarray.md @@ -8,18 +8,9 @@ Library to manipulate tensors on the GPU. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.7.5`` | ``-Python-2.7.14`` | ``fosscuda/2017b`` -``0.7.5`` | ``-Python-3.6.3`` | ``fosscuda/2017b`` -``0.7.5`` | ``-Python-3.6.3`` | ``intel/2017b`` -``0.7.5`` | ``-Python-2.7.14`` | ``intelcuda/2017b`` -``0.7.5`` | ``-Python-3.6.3`` | ``intelcuda/2017b`` -``0.7.6`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` -``0.7.6`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` -``0.7.6`` | | ``fosscuda/2019a`` -``0.7.6`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``0.7.6`` | | ``fosscuda/2020b`` +version | toolchain +--------|---------- +``0.7.6`` | ``fosscuda/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libgtextutils.md b/docs/version-specific/supported-software/l/libgtextutils.md deleted file mode 100644 index 27f4023e8b..0000000000 --- a/docs/version-specific/supported-software/l/libgtextutils.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libgtextutils - -ligtextutils is a dependency of fastx-toolkit and is provided via the same upstream - -*homepage*: - -version | toolchain ---------|---------- -``0.7`` | ``GCCcore/7.3.0`` -``0.7`` | ``foss/2016a`` -``0.7`` | ``foss/2016b`` -``0.7`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libharu.md b/docs/version-specific/supported-software/l/libharu.md index 1757a26350..1c2bb451ff 100644 --- a/docs/version-specific/supported-software/l/libharu.md +++ b/docs/version-specific/supported-software/l/libharu.md @@ -14,15 +14,8 @@ version | toolchain ``2.3.0`` | ``GCCcore/10.3.0`` ``2.3.0`` | ``GCCcore/11.2.0`` ``2.3.0`` | ``GCCcore/11.3.0`` -``2.3.0`` | ``GCCcore/7.3.0`` -``2.3.0`` | ``GCCcore/8.2.0`` -``2.3.0`` | ``GCCcore/8.3.0`` -``2.3.0`` | ``foss/2016a`` -``2.3.0`` | ``foss/2016b`` ``2.3.0`` | ``foss/2021a`` ``2.3.0`` | ``foss/2021b`` -``2.3.0`` | ``intel/2017a`` -``2.3.0`` | ``intel/2018b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libheif.md b/docs/version-specific/supported-software/l/libheif.md index e605d417e8..0bfc50bac5 100644 --- a/docs/version-specific/supported-software/l/libheif.md +++ b/docs/version-specific/supported-software/l/libheif.md @@ -10,10 +10,11 @@ libheif is an HEIF and AVIF file format decoder and encoder version | toolchain --------|---------- -``1.12.0`` | ``GCC/10.3.0`` -``1.12.0`` | ``GCC/11.2.0`` -``1.16.2`` | ``GCC/11.3.0`` -``1.17.6`` | ``GCC/12.3.0`` +``1.12.0`` | ``GCCcore/10.3.0`` +``1.12.0`` | ``GCCcore/11.2.0`` +``1.16.2`` | ``GCCcore/11.3.0`` +``1.17.6`` | ``GCCcore/12.3.0`` +``1.19.5`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libibmad.md b/docs/version-specific/supported-software/l/libibmad.md deleted file mode 100644 index 16676a5a3b..0000000000 --- a/docs/version-specific/supported-software/l/libibmad.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libibmad - -libibmad is a convenience library to encode, decode, and dump IB MAD packets. It is implemented on top of and in conjunction with libibumad (the umad kernel interface library.) - -*homepage*: - -version | toolchain ---------|---------- -``1.3.12`` | ``GCC/4.9.3-2.25`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libibumad.md b/docs/version-specific/supported-software/l/libibumad.md deleted file mode 100644 index 4966e78a8d..0000000000 --- a/docs/version-specific/supported-software/l/libibumad.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libibumad - -libibumad is the umad kernel interface library. - -*homepage*: - -version | toolchain ---------|---------- -``1.3.10.2`` | ``GCC/4.9.3-2.25`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libiconv.md b/docs/version-specific/supported-software/l/libiconv.md index 2f6053313d..69c347045a 100644 --- a/docs/version-specific/supported-software/l/libiconv.md +++ b/docs/version-specific/supported-software/l/libiconv.md @@ -10,21 +10,15 @@ Libiconv converts from one character encoding to another through Unicode convers version | toolchain --------|---------- -``1.15`` | ``GCCcore/6.3.0`` -``1.15`` | ``GCCcore/6.4.0`` -``1.15`` | ``GCCcore/7.2.0`` -``1.15`` | ``GCCcore/7.3.0`` ``1.16`` | ``GCCcore/10.2.0`` ``1.16`` | ``GCCcore/10.3.0`` ``1.16`` | ``GCCcore/11.2.0`` -``1.16`` | ``GCCcore/8.2.0`` -``1.16`` | ``GCCcore/8.3.0`` -``1.16`` | ``GCCcore/9.3.0`` ``1.17`` | ``GCCcore/11.3.0`` ``1.17`` | ``GCCcore/12.2.0`` ``1.17`` | ``GCCcore/12.3.0`` ``1.17`` | ``GCCcore/13.2.0`` ``1.17`` | ``GCCcore/13.3.0`` +``1.18`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libidn.md b/docs/version-specific/supported-software/l/libidn.md index f2fb7f196a..bc4098baee 100644 --- a/docs/version-specific/supported-software/l/libidn.md +++ b/docs/version-specific/supported-software/l/libidn.md @@ -10,15 +10,6 @@ GNU Libidn is a fully documented implementation of the Stringprep, Punycode and version | toolchain --------|---------- -``1.32`` | ``GCCcore/5.4.0`` -``1.32`` | ``GNU/4.9.3-2.25`` -``1.32`` | ``foss/2016a`` -``1.32`` | ``foss/2016b`` -``1.32`` | ``intel/2016a`` -``1.34`` | ``GCCcore/6.4.0`` -``1.35`` | ``GCCcore/7.3.0`` -``1.35`` | ``GCCcore/8.3.0`` -``1.35`` | ``GCCcore/9.3.0`` ``1.36`` | ``GCCcore/10.2.0`` ``1.36`` | ``GCCcore/10.3.0`` ``1.38`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/l/libidn2.md b/docs/version-specific/supported-software/l/libidn2.md index 14580ff40b..427fcadf10 100644 --- a/docs/version-specific/supported-software/l/libidn2.md +++ b/docs/version-specific/supported-software/l/libidn2.md @@ -12,16 +12,12 @@ version | toolchain --------|---------- ``2.3.0`` | ``GCCcore/10.2.0`` ``2.3.0`` | ``GCCcore/10.3.0`` -``2.3.0`` | ``GCCcore/5.4.0`` -``2.3.0`` | ``GCCcore/6.4.0`` -``2.3.0`` | ``GCCcore/7.3.0`` -``2.3.0`` | ``GCCcore/8.3.0`` -``2.3.0`` | ``GCCcore/9.3.0`` ``2.3.2`` | ``GCCcore/11.2.0`` ``2.3.2`` | ``GCCcore/11.3.0`` ``2.3.2`` | ``GCCcore/13.2.0`` ``2.3.4`` | ``GCCcore/12.2.0`` ``2.3.7`` | ``GCCcore/12.3.0`` +``2.3.7`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libjpeg-turbo.md b/docs/version-specific/supported-software/l/libjpeg-turbo.md index f94c07f156..f1af919f1a 100644 --- a/docs/version-specific/supported-software/l/libjpeg-turbo.md +++ b/docs/version-specific/supported-software/l/libjpeg-turbo.md @@ -4,40 +4,20 @@ search: --- # libjpeg-turbo -libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. +libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.4.2`` | ``-NASM-2.12.01`` | ``foss/2016a`` -``1.4.2`` | | ``foss/2016a`` -``1.4.2`` | | ``foss/2016b`` -``1.4.2`` | ``-NASM-2.12.01`` | ``intel/2016a`` -``1.4.2`` | | ``intel/2016a`` -``1.5.0`` | | ``GCCcore/5.4.0`` -``1.5.0`` | | ``foss/2016a`` -``1.5.0`` | | ``foss/2016b`` -``1.5.0`` | | ``intel/2016b`` -``1.5.1`` | | ``foss/2016b`` -``1.5.1`` | | ``intel/2016b`` -``1.5.1`` | | ``intel/2017a`` -``1.5.2`` | | ``GCCcore/6.3.0`` -``1.5.2`` | | ``GCCcore/6.4.0`` -``1.5.3`` | | ``GCCcore/6.4.0`` -``2.0.0`` | | ``GCCcore/7.3.0`` -``2.0.2`` | | ``GCCcore/7.3.0`` -``2.0.2`` | | ``GCCcore/8.2.0`` -``2.0.3`` | | ``GCCcore/8.3.0`` -``2.0.4`` | | ``GCCcore/9.3.0`` -``2.0.5`` | | ``GCCcore/10.2.0`` -``2.0.6`` | | ``GCCcore/10.3.0`` -``2.0.6`` | | ``GCCcore/11.2.0`` -``2.1.3`` | | ``GCCcore/11.3.0`` -``2.1.4`` | | ``GCCcore/12.2.0`` -``2.1.5.1`` | | ``GCCcore/12.3.0`` -``3.0.1`` | | ``GCCcore/13.2.0`` -``3.0.1`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``2.0.5`` | ``GCCcore/10.2.0`` +``2.0.6`` | ``GCCcore/10.3.0`` +``2.0.6`` | ``GCCcore/11.2.0`` +``2.1.3`` | ``GCCcore/11.3.0`` +``2.1.4`` | ``GCCcore/12.2.0`` +``2.1.5.1`` | ``GCCcore/12.3.0`` +``3.0.1`` | ``GCCcore/13.2.0`` +``3.0.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libmad.md b/docs/version-specific/supported-software/l/libmad.md index 56635920d5..81225e074a 100644 --- a/docs/version-specific/supported-software/l/libmad.md +++ b/docs/version-specific/supported-software/l/libmad.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``0.15.1b`` | ``GCCcore/11.3.0`` ``0.15.1b`` | ``GCCcore/12.3.0`` +``0.15.1b`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libmatheval.md b/docs/version-specific/supported-software/l/libmatheval.md index 78cea7f1e9..e7a8a67171 100644 --- a/docs/version-specific/supported-software/l/libmatheval.md +++ b/docs/version-specific/supported-software/l/libmatheval.md @@ -11,15 +11,6 @@ GNU libmatheval is a library (callable from C and Fortran) to parse and evaluat version | toolchain --------|---------- ``1.1.11`` | ``GCCcore/13.3.0`` -``1.1.11`` | ``GCCcore/6.4.0`` -``1.1.11`` | ``GCCcore/7.3.0`` -``1.1.11`` | ``GCCcore/8.2.0`` -``1.1.11`` | ``GCCcore/8.3.0`` -``1.1.11`` | ``GCCcore/9.3.0`` -``1.1.11`` | ``foss/2016b`` -``1.1.11`` | ``foss/2017a`` -``1.1.11`` | ``intel/2016a`` -``1.1.11`` | ``intel/2016b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libmaus2.md b/docs/version-specific/supported-software/l/libmaus2.md index ef3495fa6f..26fbd155d9 100644 --- a/docs/version-specific/supported-software/l/libmaus2.md +++ b/docs/version-specific/supported-software/l/libmaus2.md @@ -10,7 +10,6 @@ libmaus2 is a collection of data structures and algorithms. version | toolchain --------|---------- -``2.0.453`` | ``intel/2018a`` ``2.0.499`` | ``GCC/11.3.0`` ``2.0.813`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libmbd.md b/docs/version-specific/supported-software/l/libmbd.md index 22fda20de6..7f7795d610 100644 --- a/docs/version-specific/supported-software/l/libmbd.md +++ b/docs/version-specific/supported-software/l/libmbd.md @@ -4,7 +4,7 @@ search: --- # libmbd -Libmbd implements the many-body dispersion (MBD) method in several programming languages and frameworks: - The Fortran implementation is the reference, most advanced implementation, with support for analytical gradients and distributed parallelism, and additional functionality beyond the MBD method itself. It provides a low-level and a high-level Fortran API, as well as a C API. Furthermore, Python bindings to the C API are provided. - The Python/Numpy implementation is intended for prototyping, and as a high-level language reference. - The Python/Tensorflow implementation is an experiment that should enable rapid prototyping of machine learning applications with MBD. The Python-based implementations as well as Python bindings to the Libmbd C API are accessible from the Python package called Pymbd. +Libmbd implements the many-body dispersion (MBD) method in several programming languages and frameworks: - The Fortran implementation is the reference, most advanced implementation, with support for analytical gradients and distributed parallelism, and additional functionality beyond the MBD method itself. It provides a low-level and a high-level Fortran API, as well as a C API. Furthermore, Python bindings to the C API are provided. - The Python/Numpy implementation is intended for prototyping, and as a high-level language reference. - The Python/Tensorflow implementation is an experiment that should enable rapid prototyping of machine learning applications with MBD. The Python-based implementations as well as Python bindings to the Libmbd C API are accessible from the Python package called Pymbd. *homepage*: diff --git a/docs/version-specific/supported-software/l/libmicrohttpd.md b/docs/version-specific/supported-software/l/libmicrohttpd.md index 35ab23d2dc..a32409db0b 100644 --- a/docs/version-specific/supported-software/l/libmicrohttpd.md +++ b/docs/version-specific/supported-software/l/libmicrohttpd.md @@ -10,10 +10,7 @@ GNU libmicrohttpd is a small C library that is supposed to make it easy to run version | toolchain --------|---------- -``0.9.71`` | ``GCCcore/9.3.0`` ``0.9.73`` | ``GCCcore/10.2.0`` -``0.9.73`` | ``GCCcore/8.2.0`` -``0.9.73`` | ``GCCcore/8.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libmo_unpack.md b/docs/version-specific/supported-software/l/libmo_unpack.md deleted file mode 100644 index 473ca0da17..0000000000 --- a/docs/version-specific/supported-software/l/libmo_unpack.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libmo_unpack - -A library for handling the WGDOS and RLE compression schemes used in UM files. - -*homepage*: - -version | toolchain ---------|---------- -``3.1.2`` | ``GCCcore/6.4.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libnsl.md b/docs/version-specific/supported-software/l/libnsl.md index 2b75f2440c..c1953ff525 100644 --- a/docs/version-specific/supported-software/l/libnsl.md +++ b/docs/version-specific/supported-software/l/libnsl.md @@ -14,6 +14,7 @@ version | toolchain ``2.0.0`` | ``GCCcore/11.3.0`` ``2.0.0`` | ``GCCcore/12.2.0`` ``2.0.1`` | ``GCCcore/12.3.0`` +``2.0.1`` | ``GCCcore/13.2.0`` ``2.0.1`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/l/libobjcryst.md b/docs/version-specific/supported-software/l/libobjcryst.md index c0e469da27..005d567cf1 100644 --- a/docs/version-specific/supported-software/l/libobjcryst.md +++ b/docs/version-specific/supported-software/l/libobjcryst.md @@ -10,7 +10,6 @@ ObjCryst++ is Object-Oriented Crystallographic Library for C++ version | toolchain --------|---------- -``2017.2.3`` | ``intel/2020a`` ``2021.1.2`` | ``foss/2021b`` diff --git a/docs/version-specific/supported-software/l/libosmium.md b/docs/version-specific/supported-software/l/libosmium.md deleted file mode 100644 index 9a21135368..0000000000 --- a/docs/version-specific/supported-software/l/libosmium.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libosmium - -A fast and flexible C++ library for working with OpenStreetMap data. The Osmium Library has extensive support for all types of OSM entities: nodes, ways, relations, and changesets. It allows reading from and writing to OSM files in XML and PBF formats, including change files and full history files. Osmium can store OSM data in memory and on disk in various formats and using various indexes. Its easy to use handler interface allows you to quickly write data filtering and conversion functions. Osmium can create WKT, WKB, OGR, GEOS and GeoJSON geometries for easy conversion into many GIS formats and it can assemble multipolygons from ways and relations. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.15.4`` | ``-Python-3.6.6`` | ``foss/2018b`` -``2.15.6`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libpci.md b/docs/version-specific/supported-software/l/libpci.md index 7a74260aac..a7c387c9b6 100644 --- a/docs/version-specific/supported-software/l/libpci.md +++ b/docs/version-specific/supported-software/l/libpci.md @@ -13,7 +13,6 @@ version | toolchain ``3.7.0`` | ``GCCcore/10.2.0`` ``3.7.0`` | ``GCCcore/10.3.0`` ``3.7.0`` | ``GCCcore/11.2.0`` -``3.7.0`` | ``GCCcore/6.4.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libpciaccess.md b/docs/version-specific/supported-software/l/libpciaccess.md index 0caf456afa..59884a1151 100644 --- a/docs/version-specific/supported-software/l/libpciaccess.md +++ b/docs/version-specific/supported-software/l/libpciaccess.md @@ -6,30 +6,19 @@ search: Generic PCI access library. -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.13.4`` | ``foss/2016a`` -``0.13.4`` | ``foss/2016b`` -``0.13.4`` | ``gimkl/2.11.5`` -``0.13.4`` | ``intel/2016a`` -``0.13.4`` | ``intel/2016b`` -``0.14`` | ``GCCcore/6.4.0`` -``0.14`` | ``GCCcore/7.2.0`` -``0.14`` | ``GCCcore/7.3.0`` -``0.14`` | ``GCCcore/8.2.0`` -``0.14`` | ``GCCcore/8.3.0`` ``0.16`` | ``GCCcore/10.2.0`` ``0.16`` | ``GCCcore/10.3.0`` ``0.16`` | ``GCCcore/11.2.0`` ``0.16`` | ``GCCcore/11.3.0`` -``0.16`` | ``GCCcore/9.2.0`` -``0.16`` | ``GCCcore/9.3.0`` ``0.17`` | ``GCCcore/12.2.0`` ``0.17`` | ``GCCcore/12.3.0`` ``0.17`` | ``GCCcore/13.2.0`` ``0.18.1`` | ``GCCcore/13.3.0`` +``0.18.1`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libplinkio.md b/docs/version-specific/supported-software/l/libplinkio.md deleted file mode 100644 index c880a48104..0000000000 --- a/docs/version-specific/supported-software/l/libplinkio.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libplinkio - -A small C and Python library for reading PLINK genotype files. - -*homepage*: - -version | toolchain ---------|---------- -``0.9.8`` | ``GCCcore/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libpng.md b/docs/version-specific/supported-software/l/libpng.md index 66495d0d3f..784f97d632 100644 --- a/docs/version-specific/supported-software/l/libpng.md +++ b/docs/version-specific/supported-software/l/libpng.md @@ -10,36 +10,12 @@ libpng is the official PNG reference library version | toolchain --------|---------- -``1.2.58`` | ``system`` ``1.2.59`` | ``system`` ``1.5.30`` | ``system`` -``1.6.21`` | ``foss/2016a`` -``1.6.21`` | ``gimkl/2.11.5`` -``1.6.21`` | ``intel/2016a`` -``1.6.23`` | ``foss/2016a`` -``1.6.23`` | ``foss/2016b`` -``1.6.23`` | ``intel/2016b`` -``1.6.24`` | ``GCCcore/4.9.3`` -``1.6.24`` | ``GCCcore/5.4.0`` -``1.6.24`` | ``foss/2016b`` -``1.6.24`` | ``intel/2016b`` -``1.6.26`` | ``foss/2016b`` -``1.6.26`` | ``intel/2016b`` -``1.6.27`` | ``intel/2016b`` -``1.6.28`` | ``GCCcore/5.4.0`` -``1.6.28`` | ``GCCcore/6.3.0`` -``1.6.28`` | ``gimkl/2017a`` -``1.6.29`` | ``GCCcore/6.3.0`` -``1.6.32`` | ``GCCcore/6.4.0`` -``1.6.34`` | ``GCCcore/6.4.0`` -``1.6.34`` | ``GCCcore/7.3.0`` -``1.6.36`` | ``GCCcore/8.2.0`` ``1.6.37`` | ``GCCcore/10.2.0`` ``1.6.37`` | ``GCCcore/10.3.0`` ``1.6.37`` | ``GCCcore/11.2.0`` ``1.6.37`` | ``GCCcore/11.3.0`` -``1.6.37`` | ``GCCcore/8.3.0`` -``1.6.37`` | ``GCCcore/9.3.0`` ``1.6.38`` | ``GCCcore/12.2.0`` ``1.6.39`` | ``GCCcore/12.3.0`` ``1.6.40`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/l/libpsl.md b/docs/version-specific/supported-software/l/libpsl.md index 39fc4705e3..6f2c5e68dc 100644 --- a/docs/version-specific/supported-software/l/libpsl.md +++ b/docs/version-specific/supported-software/l/libpsl.md @@ -10,13 +10,12 @@ C library for the Public Suffix List version | toolchain --------|---------- -``0.20.2`` | ``GCCcore/7.3.0`` -``0.21.0`` | ``GCCcore/8.2.0`` -``0.21.0`` | ``GCCcore/8.3.0`` ``0.21.1`` | ``GCCcore/10.2.0`` ``0.21.1`` | ``GCCcore/10.3.0`` ``0.21.1`` | ``GCCcore/11.2.0`` ``0.21.1`` | ``GCCcore/11.3.0`` +``0.21.5`` | ``GCCcore/12.3.0`` +``0.21.5`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libpsortb.md b/docs/version-specific/supported-software/l/libpsortb.md deleted file mode 100644 index 3e9a8b4c8b..0000000000 --- a/docs/version-specific/supported-software/l/libpsortb.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libpsortb - -PSORT family of programs for subcellular localization prediction as well as other datasets and resources relevant to localization prediction. - -*homepage*: - -version | toolchain ---------|---------- -``1.0`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libpthread-stubs.md b/docs/version-specific/supported-software/l/libpthread-stubs.md deleted file mode 100644 index 11a9671367..0000000000 --- a/docs/version-specific/supported-software/l/libpthread-stubs.md +++ /dev/null @@ -1,23 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libpthread-stubs - -The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility. - -*homepage*: - -version | toolchain ---------|---------- -``0.3`` | ``GCCcore/6.4.0`` -``0.3`` | ``foss/2016a`` -``0.3`` | ``foss/2016b`` -``0.3`` | ``gimkl/2.11.5`` -``0.3`` | ``intel/2016a`` -``0.3`` | ``intel/2016b`` -``0.4`` | ``GCCcore/6.4.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libreadline.md b/docs/version-specific/supported-software/l/libreadline.md index 9ab9dcd9c6..abf1afd39f 100644 --- a/docs/version-specific/supported-software/l/libreadline.md +++ b/docs/version-specific/supported-software/l/libreadline.md @@ -4,41 +4,13 @@ search: --- # libreadline -The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands. +The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands. -*homepage*: +*homepage*: version | toolchain --------|---------- -``6.3`` | ``GCC/4.8.2`` -``6.3`` | ``GCC/4.8.4`` -``6.3`` | ``GCC/4.9.2`` -``6.3`` | ``GCC/4.9.3-2.25`` -``6.3`` | ``GCC/5.4.0-2.26`` -``6.3`` | ``GCCcore/4.9.3`` -``6.3`` | ``GCCcore/5.4.0`` -``6.3`` | ``GCCcore/6.3.0`` -``6.3`` | ``GNU/4.9.3-2.25`` -``6.3`` | ``foss/2016.04`` -``6.3`` | ``foss/2016a`` -``6.3`` | ``foss/2016b`` -``6.3`` | ``gimkl/2.11.5`` -``6.3`` | ``gimkl/2017a`` -``6.3`` | ``intel/2016.02-GCC-4.9`` -``6.3`` | ``intel/2016a`` -``6.3`` | ``intel/2016b`` -``6.3`` | ``iomkl/2016.07`` -``6.3`` | ``iomkl/2016.09-GCC-4.9.3-2.25`` -``6.3`` | ``system`` -``7.0`` | ``GCCcore/6.3.0`` -``7.0`` | ``GCCcore/6.4.0`` -``7.0`` | ``GCCcore/7.2.0`` -``7.0`` | ``GCCcore/7.3.0`` ``8.0`` | ``GCCcore/10.2.0`` -``8.0`` | ``GCCcore/8.2.0`` -``8.0`` | ``GCCcore/8.3.0`` -``8.0`` | ``GCCcore/9.3.0`` -``8.0`` | ``system`` ``8.1`` | ``GCCcore/10.3.0`` ``8.1`` | ``GCCcore/11.2.0`` ``8.1`` | ``GCCcore/11.3.0`` @@ -49,6 +21,7 @@ version | toolchain ``8.2`` | ``GCCcore/13.1.0`` ``8.2`` | ``GCCcore/13.2.0`` ``8.2`` | ``GCCcore/13.3.0`` +``8.2`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/librosa.md b/docs/version-specific/supported-software/l/librosa.md index 4e8ccb80bc..91f7502383 100644 --- a/docs/version-specific/supported-software/l/librosa.md +++ b/docs/version-specific/supported-software/l/librosa.md @@ -8,11 +8,9 @@ Audio and music processing in Python *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.1`` | | ``foss/2023a`` -``0.7.2`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.7.2`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` +version | toolchain +--------|---------- +``0.10.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/librsvg.md b/docs/version-specific/supported-software/l/librsvg.md index 55f50b208d..f0f205b797 100644 --- a/docs/version-specific/supported-software/l/librsvg.md +++ b/docs/version-specific/supported-software/l/librsvg.md @@ -4,17 +4,16 @@ search: --- # librsvg -librsvg is a library to render SVG files using cairo. +Librsvg is a library to render SVG files using cairo. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.40.15`` | ``intel/2016a`` -``2.48.4`` | ``foss/2019a`` ``2.51.2`` | ``GCCcore/10.3.0`` ``2.52.8`` | ``GCCcore/11.2.0`` ``2.55.1`` | ``GCCcore/11.3.0`` +``2.58.0`` | ``GCCcore/12.3.0`` ``2.58.0`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/l/librttopo.md b/docs/version-specific/supported-software/l/librttopo.md index 9531100157..181025031a 100644 --- a/docs/version-specific/supported-software/l/librttopo.md +++ b/docs/version-specific/supported-software/l/librttopo.md @@ -11,6 +11,7 @@ The RT Topology Library exposes an API to create and manage standard (ISO 13249 version | toolchain --------|---------- ``1.1.0`` | ``GCC/11.2.0`` +``1.1.0`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libsamplerate.md b/docs/version-specific/supported-software/l/libsamplerate.md deleted file mode 100644 index 252f74dd2f..0000000000 --- a/docs/version-specific/supported-software/l/libsamplerate.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libsamplerate - -Secret Rabbit Code (aka libsamplerate) is a Sample Rate Converter for audio. - -*homepage*: - -version | toolchain ---------|---------- -``0.1.9`` | ``GCCcore/8.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libsigc++.md b/docs/version-specific/supported-software/l/libsigc++.md index 1b389890ed..4d68d587bf 100644 --- a/docs/version-specific/supported-software/l/libsigc++.md +++ b/docs/version-specific/supported-software/l/libsigc++.md @@ -6,14 +6,10 @@ search: The libsigc++ package implements a typesafe callback system for standard C++. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.10.0`` | ``GCCcore/6.4.0`` -``2.10.1`` | ``GCCcore/7.3.0`` -``2.10.2`` | ``GCCcore/8.2.0`` -``2.10.2`` | ``GCCcore/8.3.0`` ``2.10.8`` | ``GCCcore/10.3.0`` ``2.12.1`` | ``GCCcore/11.3.0`` ``3.4.0`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/l/libsigsegv.md b/docs/version-specific/supported-software/l/libsigsegv.md index 0857cc78c0..0c6f8db9ef 100644 --- a/docs/version-specific/supported-software/l/libsigsegv.md +++ b/docs/version-specific/supported-software/l/libsigsegv.md @@ -10,8 +10,6 @@ GNU libsigsegv is a library for handling page faults in user mode. version | toolchain --------|---------- -``2.11`` | ``GCCcore/6.4.0`` -``2.12`` | ``GCCcore/9.3.0`` ``2.13`` | ``GCCcore/10.2.0`` ``2.14`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/l/libsndfile.md b/docs/version-specific/supported-software/l/libsndfile.md index 889542f11a..43e3556564 100644 --- a/docs/version-specific/supported-software/l/libsndfile.md +++ b/docs/version-specific/supported-software/l/libsndfile.md @@ -11,12 +11,6 @@ Libsndfile is a C library for reading and writing files containing sampled sound version | toolchain --------|---------- ``1.0.28`` | ``GCCcore/10.2.0`` -``1.0.28`` | ``GCCcore/6.4.0`` -``1.0.28`` | ``GCCcore/7.3.0`` -``1.0.28`` | ``GCCcore/8.2.0`` -``1.0.28`` | ``GCCcore/8.3.0`` -``1.0.28`` | ``GCCcore/9.3.0`` -``1.0.28`` | ``intel/2017a`` ``1.0.31`` | ``GCCcore/10.3.0`` ``1.0.31`` | ``GCCcore/11.2.0`` ``1.1.0`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/l/libsodium.md b/docs/version-specific/supported-software/l/libsodium.md index 8c095f3df6..963aa09c00 100644 --- a/docs/version-specific/supported-software/l/libsodium.md +++ b/docs/version-specific/supported-software/l/libsodium.md @@ -4,33 +4,20 @@ search: --- # libsodium -Sodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more. +Sodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more. *homepage*: version | toolchain --------|---------- -``1.0.11`` | ``foss/2016b`` -``1.0.11`` | ``intel/2016b`` -``1.0.12`` | ``GCCcore/6.4.0`` -``1.0.12`` | ``intel/2017a`` -``1.0.13`` | ``GCCcore/6.4.0`` -``1.0.13`` | ``foss/2017a`` -``1.0.16`` | ``GCCcore/6.4.0`` -``1.0.16`` | ``GCCcore/7.3.0`` -``1.0.17`` | ``GCCcore/8.2.0`` ``1.0.18`` | ``GCCcore/10.2.0`` ``1.0.18`` | ``GCCcore/10.3.0`` ``1.0.18`` | ``GCCcore/11.2.0`` ``1.0.18`` | ``GCCcore/11.3.0`` ``1.0.18`` | ``GCCcore/12.2.0`` ``1.0.18`` | ``GCCcore/12.3.0`` -``1.0.18`` | ``GCCcore/8.3.0`` -``1.0.18`` | ``GCCcore/9.3.0`` ``1.0.19`` | ``GCCcore/13.2.0`` ``1.0.20`` | ``GCCcore/13.3.0`` -``1.0.6`` | ``intel/2016a`` -``1.0.8`` | ``foss/2016a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libspatialindex.md b/docs/version-specific/supported-software/l/libspatialindex.md index 7103b951b5..4ab106b0ce 100644 --- a/docs/version-specific/supported-software/l/libspatialindex.md +++ b/docs/version-specific/supported-software/l/libspatialindex.md @@ -6,15 +6,10 @@ search: C++ implementation of R*-tree, an MVR-tree and a TPR-tree with C API -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.8.5`` | ``GCCcore/6.4.0`` -``1.8.5`` | ``GCCcore/8.2.0`` -``1.8.5`` | ``foss/2016b`` -``1.8.5`` | ``intel/2016b`` -``1.8.5`` | ``intel/2018a`` ``1.9.3`` | ``GCCcore/11.2.0`` ``1.9.3`` | ``GCCcore/11.3.0`` ``1.9.3`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/l/libspatialite.md b/docs/version-specific/supported-software/l/libspatialite.md index 485d87c22f..f88406efae 100644 --- a/docs/version-specific/supported-software/l/libspatialite.md +++ b/docs/version-specific/supported-software/l/libspatialite.md @@ -8,14 +8,10 @@ SpatiaLite is an open source library intended to extend the SQLite core to suppo *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.3.0a`` | ``-Python-3.7.4`` | ``GCC/8.3.0`` -``4.3.0a`` | | ``foss/2016b`` -``4.3.0a`` | | ``foss/2018b`` -``4.3.0a`` | ``-Python-3.7.2`` | ``foss/2019a`` -``4.3.0a`` | | ``intel/2016b`` -``5.0.1`` | | ``GCC/11.2.0`` +version | toolchain +--------|---------- +``5.0.1`` | ``GCC/11.2.0`` +``5.1.0`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libssh.md b/docs/version-specific/supported-software/l/libssh.md deleted file mode 100644 index 99c90c569d..0000000000 --- a/docs/version-specific/supported-software/l/libssh.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libssh - -Multiplatform C library implementing the SSHv2 protocol on client and server side - -*homepage*: - -version | toolchain ---------|---------- -``0.9.0`` | ``GCCcore/6.4.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libtar.md b/docs/version-specific/supported-software/l/libtar.md deleted file mode 100644 index 56d1c14bed..0000000000 --- a/docs/version-specific/supported-software/l/libtar.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libtar - -C library for manipulating POSIX tar files - -*homepage*: - -version | toolchain ---------|---------- -``1.2.20`` | ``GCCcore/7.3.0`` -``1.2.20`` | ``GCCcore/8.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libtasn1.md b/docs/version-specific/supported-software/l/libtasn1.md index 0fefb7542e..7fc91952f9 100644 --- a/docs/version-specific/supported-software/l/libtasn1.md +++ b/docs/version-specific/supported-software/l/libtasn1.md @@ -4,24 +4,17 @@ search: --- # libtasn1 -Libtasn1 is the ASN.1 library used by GnuTLS, GNU Shishi and some other packages. It was written by Fabio Fiorina, and has been shipped as part of GnuTLS for some time but is now a proper GNU package. +Libtasn1 is the ASN.1 library used by GnuTLS, GNU Shishi and some other packages. It was written by Fabio Fiorina, and has been shipped as part of GnuTLS for some time but is now a proper GNU package. *homepage*: version | toolchain --------|---------- -``4.12`` | ``GCCcore/5.4.0`` -``4.13`` | ``GCCcore/7.3.0`` -``4.13`` | ``GCCcore/8.2.0`` ``4.16.0`` | ``GCCcore/10.2.0`` -``4.16.0`` | ``GCCcore/8.3.0`` ``4.17.0`` | ``GCCcore/10.3.0`` ``4.18.0`` | ``GCCcore/11.2.0`` ``4.19.0`` | ``GCCcore/11.3.0`` ``4.19.0`` | ``GCCcore/12.3.0`` -``4.7`` | ``GNU/4.9.3-2.25`` -``4.7`` | ``foss/2016a`` -``4.7`` | ``intel/2016a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libtirpc.md b/docs/version-specific/supported-software/l/libtirpc.md index cdcdb55dbd..231ab37b4b 100644 --- a/docs/version-specific/supported-software/l/libtirpc.md +++ b/docs/version-specific/supported-software/l/libtirpc.md @@ -10,10 +10,6 @@ Libtirpc is a port of Suns Transport-Independent RPC library to Linux. version | toolchain --------|---------- -``1.1.4`` | ``GCCcore/7.3.0`` -``1.1.4`` | ``GCCcore/8.2.0`` -``1.2.6`` | ``GCCcore/8.3.0`` -``1.2.6`` | ``GCCcore/9.3.0`` ``1.3.1`` | ``GCCcore/10.2.0`` ``1.3.2`` | ``GCCcore/10.3.0`` ``1.3.2`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/l/libtool.md b/docs/version-specific/supported-software/l/libtool.md index d58d54737f..5c4426ea0f 100644 --- a/docs/version-specific/supported-software/l/libtool.md +++ b/docs/version-specific/supported-software/l/libtool.md @@ -4,52 +4,15 @@ search: --- # libtool -GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface. +GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.4.2`` | ``GCC/4.8.2`` -``2.4.2`` | ``GCC/4.9.2`` -``2.4.5`` | ``GCC/4.8.4`` -``2.4.5`` | ``GCC/4.9.2`` -``2.4.6`` | ``GCC/4.8.4`` -``2.4.6`` | ``GCC/4.9.2`` -``2.4.6`` | ``GCC/4.9.3-2.25`` -``2.4.6`` | ``GCC/4.9.3`` -``2.4.6`` | ``GCC/5.2.0`` -``2.4.6`` | ``GCC/5.4.0-2.26`` ``2.4.6`` | ``GCCcore/10.2.0`` ``2.4.6`` | ``GCCcore/10.3.0`` ``2.4.6`` | ``GCCcore/11.2.0`` -``2.4.6`` | ``GCCcore/4.9.2`` -``2.4.6`` | ``GCCcore/4.9.3`` -``2.4.6`` | ``GCCcore/5.3.0`` -``2.4.6`` | ``GCCcore/5.4.0`` -``2.4.6`` | ``GCCcore/6.1.0`` -``2.4.6`` | ``GCCcore/6.2.0`` -``2.4.6`` | ``GCCcore/6.3.0`` -``2.4.6`` | ``GCCcore/6.4.0`` -``2.4.6`` | ``GCCcore/7.2.0`` -``2.4.6`` | ``GCCcore/7.3.0`` -``2.4.6`` | ``GCCcore/8.2.0`` -``2.4.6`` | ``GCCcore/8.3.0`` -``2.4.6`` | ``GCCcore/9.2.0`` -``2.4.6`` | ``GCCcore/9.3.0`` -``2.4.6`` | ``GNU/4.9.2-2.25`` -``2.4.6`` | ``GNU/4.9.3-2.25`` -``2.4.6`` | ``GNU/5.1.0-2.25`` -``2.4.6`` | ``foss/2016.04`` -``2.4.6`` | ``foss/2016a`` -``2.4.6`` | ``foss/2016b`` -``2.4.6`` | ``gimkl/2.11.5`` -``2.4.6`` | ``intel/2016.02-GCC-4.9`` -``2.4.6`` | ``intel/2016a`` -``2.4.6`` | ``intel/2016b`` -``2.4.6`` | ``iomkl/2016.07`` -``2.4.6`` | ``iomkl/2016.09-GCC-4.9.3-2.25`` -``2.4.6`` | ``system`` ``2.4.7`` | ``GCCcore/11.3.0`` ``2.4.7`` | ``GCCcore/12.2.0`` ``2.4.7`` | ``GCCcore/12.3.0`` @@ -57,6 +20,7 @@ version | toolchain ``2.4.7`` | ``GCCcore/13.2.0`` ``2.4.7`` | ``GCCcore/13.3.0`` ``2.4.7`` | ``system`` +``2.5.4`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libtree.md b/docs/version-specific/supported-software/l/libtree.md index 56c8b06197..a523631818 100644 --- a/docs/version-specific/supported-software/l/libtree.md +++ b/docs/version-specific/supported-software/l/libtree.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``2.0.0`` | ``GCCcore/10.3.0`` ``3.0.3`` | ``system`` +``3.1.1`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libunistring.md b/docs/version-specific/supported-software/l/libunistring.md index 564f2fd245..319cbfe326 100644 --- a/docs/version-specific/supported-software/l/libunistring.md +++ b/docs/version-specific/supported-software/l/libunistring.md @@ -11,24 +11,12 @@ This library provides functions for manipulating Unicode strings and for manipu version | toolchain --------|---------- ``0.9.10`` | ``GCCcore/10.3.0`` -``0.9.10`` | ``GCCcore/7.3.0`` -``0.9.10`` | ``GCCcore/8.2.0`` -``0.9.10`` | ``GCCcore/8.3.0`` -``0.9.10`` | ``GCCcore/9.3.0`` -``0.9.3`` | ``GCC/4.9.3-2.25`` -``0.9.3`` | ``GNU/4.9.3-2.25`` -``0.9.3`` | ``foss/2016a`` -``0.9.3`` | ``intel/2016a`` -``0.9.6`` | ``GCCcore/5.4.0`` -``0.9.6`` | ``foss/2016b`` -``0.9.6`` | ``foss/2017a`` -``0.9.6`` | ``intel/2016b`` -``0.9.7`` | ``GCCcore/6.4.0`` ``1.0`` | ``GCCcore/11.2.0`` ``1.0`` | ``GCCcore/11.3.0`` ``1.1`` | ``GCCcore/10.2.0`` ``1.1`` | ``GCCcore/12.3.0`` ``1.2`` | ``GCCcore/13.3.0`` +``1.3`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libunwind.md b/docs/version-specific/supported-software/l/libunwind.md index de01cb1e32..dfab8caeda 100644 --- a/docs/version-specific/supported-software/l/libunwind.md +++ b/docs/version-specific/supported-software/l/libunwind.md @@ -6,20 +6,10 @@ search: The primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.1`` | ``GCC/4.9.2`` -``1.1`` | ``foss/2016a`` -``1.1`` | ``intel/2016b`` -``1.2.1`` | ``GCCcore/6.3.0`` -``1.2.1`` | ``GCCcore/6.4.0`` -``1.2.1`` | ``GCCcore/7.3.0`` -``1.2.1`` | ``foss/2016b`` -``1.3.1`` | ``GCCcore/8.2.0`` -``1.3.1`` | ``GCCcore/8.3.0`` -``1.3.1`` | ``GCCcore/9.3.0`` ``1.4.0`` | ``GCCcore/10.2.0`` ``1.4.0`` | ``GCCcore/10.3.0`` ``1.5.0`` | ``GCCcore/10.3.0`` diff --git a/docs/version-specific/supported-software/l/libutempter.md b/docs/version-specific/supported-software/l/libutempter.md deleted file mode 100644 index 4a042819a7..0000000000 --- a/docs/version-specific/supported-software/l/libutempter.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libutempter - -libutempter is library that provides an interface for terminal emulators such as screen and xterm to record user sessions to utmp and wtmp files. - -*homepage*: - -version | toolchain ---------|---------- -``1.1.6.2`` | ``GCC/6.4.0-2.28`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libuv.md b/docs/version-specific/supported-software/l/libuv.md index 9ff70e8704..0d2d6e77ba 100644 --- a/docs/version-specific/supported-software/l/libuv.md +++ b/docs/version-specific/supported-software/l/libuv.md @@ -10,7 +10,6 @@ libuv is a multi-platform support library with a focus on asynchronous I/O. version | toolchain --------|---------- -``1.37.0`` | ``GCCcore/8.3.0`` ``1.48.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libvdwxc.md b/docs/version-specific/supported-software/l/libvdwxc.md index ad33de9af9..e1566bef9c 100644 --- a/docs/version-specific/supported-software/l/libvdwxc.md +++ b/docs/version-specific/supported-software/l/libvdwxc.md @@ -10,15 +10,12 @@ libvdwxc is a general library for evaluating energy and potential for exchange-c version | toolchain --------|---------- -``0.3.2`` | ``foss/2018b`` -``0.4.0`` | ``foss/2019a`` -``0.4.0`` | ``foss/2019b`` -``0.4.0`` | ``foss/2020a`` ``0.4.0`` | ``foss/2020b`` ``0.4.0`` | ``foss/2021a`` ``0.4.0`` | ``foss/2021b`` ``0.4.0`` | ``foss/2022a`` ``0.4.0`` | ``foss/2023a`` +``0.4.0`` | ``foss/2024a`` ``0.4.0`` | ``intel/2020b`` ``0.4.0`` | ``intel/2021a`` ``0.4.0`` | ``intel/2021b`` diff --git a/docs/version-specific/supported-software/l/libvips.md b/docs/version-specific/supported-software/l/libvips.md new file mode 100644 index 0000000000..9ecf7d9b4e --- /dev/null +++ b/docs/version-specific/supported-software/l/libvips.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# libvips + +libvips is a demand-driven, horizontally threaded image processing library. + +*homepage*: + +version | toolchain +--------|---------- +``8.15.2`` | ``GCC/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/l/libwebp.md b/docs/version-specific/supported-software/l/libwebp.md index 0ecb664eec..985ab1f4e7 100644 --- a/docs/version-specific/supported-software/l/libwebp.md +++ b/docs/version-specific/supported-software/l/libwebp.md @@ -4,18 +4,13 @@ search: --- # libwebp -WebP is a modern image format that provides superior lossless and lossy compression for images on the web. Using WebP, webmasters and web developers can create smaller, richer images that make the web faster. +WebP is a modern image format that provides superior lossless and lossy compression for images on the web. Using WebP, webmasters and web developers can create smaller, richer images that make the web faster. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.0.0`` | ``foss/2018b`` -``1.0.2`` | ``GCCcore/7.3.0`` -``1.0.2`` | ``GCCcore/8.2.0`` ``1.1.0`` | ``GCCcore/10.2.0`` -``1.1.0`` | ``GCCcore/8.3.0`` -``1.1.0`` | ``GCCcore/9.3.0`` ``1.2.0`` | ``GCCcore/10.3.0`` ``1.2.0`` | ``GCCcore/11.2.0`` ``1.2.4`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/l/libwpe.md b/docs/version-specific/supported-software/l/libwpe.md index 1b717e1a2c..94115c89e3 100644 --- a/docs/version-specific/supported-software/l/libwpe.md +++ b/docs/version-specific/supported-software/l/libwpe.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``1.13.3`` | ``GCCcore/11.2.0`` ``1.14.1`` | ``GCCcore/11.3.0`` +``1.16.0`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libxc.md b/docs/version-specific/supported-software/l/libxc.md index d9987792d9..a87de4339a 100644 --- a/docs/version-specific/supported-software/l/libxc.md +++ b/docs/version-specific/supported-software/l/libxc.md @@ -8,69 +8,31 @@ Libxc is a library of exchange-correlation functionals for density-functional th *homepage*: -version | toolchain ---------|---------- -``2.2.2`` | ``GCC/8.2.0-2.31.1`` -``2.2.2`` | ``foss/2018b`` -``2.2.2`` | ``intel/2018b`` -``2.2.3`` | ``foss/2016b`` -``2.2.3`` | ``intel/2016a`` -``2.2.3`` | ``intel/2016b`` -``2.2.3`` | ``intel/2017b`` -``2.2.3`` | ``intel/2018a`` -``3.0.0`` | ``GCC/5.4.0-2.26`` -``3.0.0`` | ``iccifort/2016.3.210-GCC-5.4.0-2.26`` -``3.0.0`` | ``intel/2016a`` -``3.0.0`` | ``intel/2016b`` -``3.0.0`` | ``intel/2017a`` -``3.0.0`` | ``intel/2017b`` -``3.0.1`` | ``GCC/8.2.0-2.31.1`` -``3.0.1`` | ``foss/2016b`` -``3.0.1`` | ``foss/2017a`` -``3.0.1`` | ``foss/2018a`` -``3.0.1`` | ``foss/2018b`` -``3.0.1`` | ``foss/2020a`` -``3.0.1`` | ``foss/2020b`` -``3.0.1`` | ``gimkl/2017a`` -``3.0.1`` | ``intel/2018a`` -``3.0.1`` | ``intel/2018b`` -``3.0.1`` | ``intel/2020a`` -``4.0.1`` | ``foss/2017b`` -``4.0.1`` | ``intel/2017b`` -``4.0.3`` | ``foss/2016b`` -``4.0.3`` | ``foss/2017a`` -``4.2.3`` | ``foss/2017b`` -``4.2.3`` | ``foss/2018a`` -``4.2.3`` | ``foss/2018b`` -``4.2.3`` | ``gimkl/2017a`` -``4.2.3`` | ``intel/2018a`` -``4.2.3`` | ``intel/2018b`` -``4.3.4`` | ``GCC/10.2.0`` -``4.3.4`` | ``GCC/10.3.0`` -``4.3.4`` | ``GCC/11.2.0`` -``4.3.4`` | ``GCC/8.2.0-2.31.1`` -``4.3.4`` | ``GCC/8.3.0`` -``4.3.4`` | ``GCC/9.3.0`` -``4.3.4`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``4.3.4`` | ``iccifort/2019.5.281`` -``4.3.4`` | ``iccifort/2020.1.217`` -``4.3.4`` | ``iccifort/2020.4.304`` -``4.3.4`` | ``intel-compilers/2021.2.0`` -``4.3.4`` | ``intel-compilers/2021.4.0`` -``5.1.2`` | ``GCC/10.2.0`` -``5.1.3`` | ``GCC/10.2.0`` -``5.1.5`` | ``GCC/10.3.0`` -``5.1.5`` | ``intel-compilers/2021.2.0`` -``5.1.6`` | ``GCC/11.2.0`` -``5.1.6`` | ``intel-compilers/2021.4.0`` -``5.2.3`` | ``GCC/11.3.0`` -``5.2.3`` | ``intel-compilers/2022.1.0`` -``6.1.0`` | ``GCC/12.2.0`` -``6.1.0`` | ``intel-compilers/2022.2.1`` -``6.2.2`` | ``GCC/12.3.0`` -``6.2.2`` | ``GCC/13.2.0`` -``6.2.2`` | ``intel-compilers/2023.1.0`` -``6.2.2`` | ``intel-compilers/2023.2.1`` +version | versionsuffix | toolchain +--------|---------------|---------- +``3.0.1`` | | ``foss/2020b`` +``4.3.4`` | | ``GCC/10.2.0`` +``4.3.4`` | | ``GCC/10.3.0`` +``4.3.4`` | | ``GCC/11.2.0`` +``4.3.4`` | | ``iccifort/2020.4.304`` +``4.3.4`` | | ``intel-compilers/2021.2.0`` +``4.3.4`` | | ``intel-compilers/2021.4.0`` +``5.1.2`` | | ``GCC/10.2.0`` +``5.1.3`` | | ``GCC/10.2.0`` +``5.1.5`` | | ``GCC/10.3.0`` +``5.1.5`` | | ``intel-compilers/2021.2.0`` +``5.1.6`` | | ``GCC/11.2.0`` +``5.1.6`` | | ``intel-compilers/2021.4.0`` +``5.2.3`` | | ``GCC/11.3.0`` +``5.2.3`` | | ``intel-compilers/2022.1.0`` +``6.1.0`` | | ``GCC/12.2.0`` +``6.1.0`` | | ``intel-compilers/2022.2.1`` +``6.2.2`` | | ``GCC/12.3.0`` +``6.2.2`` | ``-nofhc`` | ``GCC/13.2.0`` +``6.2.2`` | | ``GCC/13.2.0`` +``6.2.2`` | | ``GCC/13.3.0`` +``6.2.2`` | | ``intel-compilers/2023.1.0`` +``6.2.2`` | | ``intel-compilers/2023.2.1`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libxcb.md b/docs/version-specific/supported-software/l/libxcb.md deleted file mode 100644 index 7f891e22de..0000000000 --- a/docs/version-specific/supported-software/l/libxcb.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libxcb - -The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility. - -*homepage*: - -version | toolchain ---------|---------- -``1.11.1`` | ``foss/2016a`` -``1.11.1`` | ``gimkl/2.11.5`` -``1.11.1`` | ``intel/2016a`` -``1.13`` | ``GCCcore/6.4.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libxkbcommon.md b/docs/version-specific/supported-software/l/libxkbcommon.md deleted file mode 100644 index aafbed84a5..0000000000 --- a/docs/version-specific/supported-software/l/libxkbcommon.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libxkbcommon - -xkbcommon is a library to handle keyboard descriptions, including loading them from disk, parsing them and handling their state. It's mainly meant for client toolkits, window systems, and other system applications. - -*homepage*: - -version | toolchain ---------|---------- -``0.6.1`` | ``foss/2016a`` -``0.6.1`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libxml++.md b/docs/version-specific/supported-software/l/libxml++.md index 4a0016bac2..f3e697ae22 100644 --- a/docs/version-specific/supported-software/l/libxml++.md +++ b/docs/version-specific/supported-software/l/libxml++.md @@ -10,9 +10,6 @@ libxml++ is a C++ wrapper for the libxml XML parser library. version | toolchain --------|---------- -``2.40.1`` | ``GCCcore/7.3.0`` -``2.40.1`` | ``GCCcore/8.2.0`` -``2.40.1`` | ``GCCcore/8.3.0`` ``2.42.1`` | ``GCC/10.3.0`` diff --git a/docs/version-specific/supported-software/l/libxml2-python.md b/docs/version-specific/supported-software/l/libxml2-python.md index 0ff4613097..d3943e03ff 100644 --- a/docs/version-specific/supported-software/l/libxml2-python.md +++ b/docs/version-specific/supported-software/l/libxml2-python.md @@ -8,13 +8,10 @@ Libxml2 is the XML C parser and toolchain developed for the Gnome project (but *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.11.4`` | | ``GCCcore/12.3.0`` -``2.9.13`` | | ``GCCcore/11.3.0`` -``2.9.7`` | ``-Python-2.7.14`` | ``intel/2018a`` -``2.9.8`` | ``-Python-3.7.2`` | ``GCCcore/8.2.0`` -``2.9.8`` | ``-Python-2.7.15`` | ``foss/2018b`` +version | toolchain +--------|---------- +``2.11.4`` | ``GCCcore/12.3.0`` +``2.9.13`` | ``GCCcore/11.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libxml2.md b/docs/version-specific/supported-software/l/libxml2.md index f0f00a9dc3..8db5d34313 100644 --- a/docs/version-specific/supported-software/l/libxml2.md +++ b/docs/version-specific/supported-software/l/libxml2.md @@ -8,50 +8,17 @@ Libxml2 is the XML C parser and toolchain developed for the Gnome project (but *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.10.3`` | | ``GCCcore/12.2.0`` -``2.11.4`` | | ``GCCcore/12.3.0`` -``2.11.5`` | | ``GCCcore/13.2.0`` -``2.12.7`` | | ``GCCcore/13.3.0`` -``2.9.10`` | | ``GCCcore/10.2.0`` -``2.9.10`` | | ``GCCcore/10.3.0`` -``2.9.10`` | | ``GCCcore/11.2.0`` -``2.9.10`` | | ``GCCcore/9.2.0`` -``2.9.10`` | | ``GCCcore/9.3.0`` -``2.9.13`` | | ``GCCcore/11.3.0`` -``2.9.2`` | | ``GCC/4.8.3`` -``2.9.2`` | | ``GCC/4.8.4`` -``2.9.2`` | | ``GCC/4.9.2`` -``2.9.2`` | | ``GCC/4.9.3-2.25`` -``2.9.2`` | | ``GNU/4.9.3-2.25`` -``2.9.3`` | | ``GCC/4.9.3-2.25`` -``2.9.3`` | ``-Python-2.7.11`` | ``foss/2016a`` -``2.9.3`` | | ``foss/2016a`` -``2.9.3`` | | ``gimkl/2.11.5`` -``2.9.3`` | ``-Python-2.7.11`` | ``intel/2016a`` -``2.9.3`` | | ``intel/2016a`` -``2.9.4`` | | ``GCC/5.4.0-2.26`` -``2.9.4`` | | ``GCCcore/4.9.3`` -``2.9.4`` | | ``GCCcore/5.4.0`` -``2.9.4`` | | ``GCCcore/6.3.0`` -``2.9.4`` | | ``GCCcore/6.4.0`` -``2.9.4`` | | ``foss/2016.04`` -``2.9.4`` | | ``foss/2016a`` -``2.9.4`` | ``-Python-2.7.12`` | ``foss/2016b`` -``2.9.4`` | | ``foss/2016b`` -``2.9.4`` | | ``gimkl/2017a`` -``2.9.4`` | ``-Python-2.7.12`` | ``intel/2016b`` -``2.9.4`` | | ``intel/2016b`` -``2.9.4`` | ``-Python-2.7.13`` | ``intel/2017a`` -``2.9.5`` | | ``GCCcore/6.3.0`` -``2.9.6`` | | ``GCCcore/6.4.0`` -``2.9.7`` | | ``GCCcore/6.4.0`` -``2.9.8`` | | ``GCCcore/6.4.0`` -``2.9.8`` | | ``GCCcore/7.2.0`` -``2.9.8`` | | ``GCCcore/7.3.0`` -``2.9.8`` | | ``GCCcore/8.2.0`` -``2.9.9`` | | ``GCCcore/8.3.0`` +version | toolchain +--------|---------- +``2.10.3`` | ``GCCcore/12.2.0`` +``2.11.4`` | ``GCCcore/12.3.0`` +``2.11.5`` | ``GCCcore/13.2.0`` +``2.12.7`` | ``GCCcore/13.3.0`` +``2.13.4`` | ``GCCcore/14.2.0`` +``2.9.10`` | ``GCCcore/10.2.0`` +``2.9.10`` | ``GCCcore/10.3.0`` +``2.9.10`` | ``GCCcore/11.2.0`` +``2.9.13`` | ``GCCcore/11.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libxslt.md b/docs/version-specific/supported-software/l/libxslt.md index e041ef0105..6c2f95ea7d 100644 --- a/docs/version-specific/supported-software/l/libxslt.md +++ b/docs/version-specific/supported-software/l/libxslt.md @@ -8,29 +8,17 @@ Libxslt is the XSLT C library developed for the GNOME project (but usable outsi *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.28`` | | ``foss/2016a`` -``1.1.28`` | ``-Python-2.7.11`` | ``intel/2016a`` -``1.1.28`` | | ``intel/2016a`` -``1.1.29`` | | ``foss/2016b`` -``1.1.29`` | | ``intel/2016a`` -``1.1.29`` | | ``intel/2016b`` -``1.1.29`` | | ``intel/2017a`` -``1.1.30`` | | ``GCCcore/6.3.0`` -``1.1.32`` | | ``GCCcore/6.4.0`` -``1.1.32`` | | ``GCCcore/7.3.0`` -``1.1.33`` | | ``GCCcore/8.2.0`` -``1.1.34`` | | ``GCCcore/10.2.0`` -``1.1.34`` | | ``GCCcore/10.3.0`` -``1.1.34`` | | ``GCCcore/11.2.0`` -``1.1.34`` | | ``GCCcore/11.3.0`` -``1.1.34`` | | ``GCCcore/8.3.0`` -``1.1.34`` | | ``GCCcore/9.3.0`` -``1.1.37`` | | ``GCCcore/12.2.0`` -``1.1.38`` | | ``GCCcore/12.3.0`` -``1.1.38`` | | ``GCCcore/13.2.0`` -``1.1.42`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``1.1.34`` | ``GCCcore/10.2.0`` +``1.1.34`` | ``GCCcore/10.3.0`` +``1.1.34`` | ``GCCcore/11.2.0`` +``1.1.34`` | ``GCCcore/11.3.0`` +``1.1.37`` | ``GCCcore/12.2.0`` +``1.1.38`` | ``GCCcore/12.3.0`` +``1.1.38`` | ``GCCcore/13.2.0`` +``1.1.42`` | ``GCCcore/13.3.0`` +``1.1.42`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libxsmm.md b/docs/version-specific/supported-software/l/libxsmm.md index 2245fde792..9e53a335a3 100644 --- a/docs/version-specific/supported-software/l/libxsmm.md +++ b/docs/version-specific/supported-software/l/libxsmm.md @@ -6,17 +6,11 @@ search: LIBXSMM is a library for small dense and small sparse matrix-matrix multiplications targeting Intel Architecture (x86). -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.10`` | ``GCC/8.2.0-2.31.1`` -``1.10`` | ``foss/2018b`` -``1.10`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``1.10`` | ``intel/2018b`` ``1.16.1`` | ``GCC/10.2.0`` -``1.16.1`` | ``GCC/9.3.0`` -``1.16.1`` | ``iccifort/2020.1.217`` ``1.16.1`` | ``iccifort/2020.4.304`` ``1.16.2`` | ``GCC/10.3.0`` ``1.16.2`` | ``intel-compilers/2021.2.0`` @@ -24,14 +18,6 @@ version | toolchain ``1.17`` | ``GCC/11.3.0`` ``1.17`` | ``GCC/12.2.0`` ``1.17`` | ``GCC/12.3.0`` -``1.4`` | ``intel/2016a`` -``1.4.4`` | ``foss/2016b`` -``1.4.4`` | ``intel/2016b`` -``1.6.4`` | ``foss/2016b`` -``1.6.4`` | ``intel/2016b`` -``1.8.2`` | ``intel/2017b`` -``1.8.3`` | ``foss/2018a`` -``1.8.3`` | ``intel/2018a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libyaml.md b/docs/version-specific/supported-software/l/libyaml.md index 998b21dbd4..68fd7b830c 100644 --- a/docs/version-specific/supported-software/l/libyaml.md +++ b/docs/version-specific/supported-software/l/libyaml.md @@ -6,23 +6,10 @@ search: LibYAML is a YAML parser and emitter written in C. -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.1.6`` | ``GCCcore/6.4.0`` -``0.1.6`` | ``foss/2016b`` -``0.1.6`` | ``intel/2016a`` -``0.1.6`` | ``intel/2016b`` -``0.1.7`` | ``GCCcore/6.3.0`` -``0.1.7`` | ``GCCcore/6.4.0`` -``0.1.7`` | ``GCCcore/7.3.0`` -``0.1.7`` | ``system`` -``0.2.1`` | ``GCCcore/7.3.0`` -``0.2.1`` | ``system`` -``0.2.2`` | ``GCCcore/8.2.0`` -``0.2.2`` | ``GCCcore/8.3.0`` -``0.2.2`` | ``GCCcore/9.3.0`` ``0.2.5`` | ``GCCcore/10.2.0`` ``0.2.5`` | ``GCCcore/10.3.0`` ``0.2.5`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/l/libyuv.md b/docs/version-specific/supported-software/l/libyuv.md new file mode 100644 index 0000000000..c6a830281d --- /dev/null +++ b/docs/version-specific/supported-software/l/libyuv.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# libyuv + +libyuv is an open source project that includes YUV scaling and conversion functionality. + +*homepage*: + +version | toolchain +--------|---------- +``20241125`` | ``GCCcore/13.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/l/libzeep.md b/docs/version-specific/supported-software/l/libzeep.md deleted file mode 100644 index b9b92d495f..0000000000 --- a/docs/version-specific/supported-software/l/libzeep.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libzeep - -Libzeep was originally developed to make it easy to create SOAP servers. - -*homepage*: - -version | toolchain ---------|---------- -``5.0.1`` | ``gompi/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libzip.md b/docs/version-specific/supported-software/l/libzip.md index c89fe79b3c..1b29972393 100644 --- a/docs/version-specific/supported-software/l/libzip.md +++ b/docs/version-specific/supported-software/l/libzip.md @@ -10,8 +10,8 @@ libzip is a C library for reading, creating, and modifying zip archives. version | toolchain --------|---------- +``1.10.1`` | ``GCCcore/12.3.0`` ``1.10.1`` | ``GCCcore/13.2.0`` -``1.5.2`` | ``GCCcore/8.2.0`` ``1.7.3`` | ``GCCcore/10.2.0`` ``1.7.3`` | ``GCCcore/10.3.0`` ``1.7.3`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/l/lie_learn.md b/docs/version-specific/supported-software/l/lie_learn.md deleted file mode 100644 index 9b55bef76b..0000000000 --- a/docs/version-specific/supported-software/l/lie_learn.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# lie_learn - -lie_learn is a python package that knows how to do various tricky computations related to Lie groups and manifolds (mainly the sphere S2 and rotation group SO3). - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.0.1.post1`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/lifelines.md b/docs/version-specific/supported-software/l/lifelines.md index e2e636d40d..89113a6c07 100644 --- a/docs/version-specific/supported-software/l/lifelines.md +++ b/docs/version-specific/supported-software/l/lifelines.md @@ -4,15 +4,17 @@ search: --- # lifelines -lifelines is a pure Python implementation of the best parts of survival analysis +lifelines is a complete survival analysis library, written in pure Python. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.22.8`` | ``-Python-3.7.2`` | ``fosscuda/2019a`` -``0.26.3`` | | ``fosscuda/2020b`` -``0.27.4`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``0.26.3`` | ``fosscuda/2020b`` +``0.27.4`` | ``foss/2022a`` +``0.27.7`` | ``foss/2022b`` +``0.28.0`` | ``gfbf/2023a`` +``0.29.0`` | ``gfbf/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/likwid.md b/docs/version-specific/supported-software/l/likwid.md index bb641bc621..6e0588391d 100644 --- a/docs/version-specific/supported-software/l/likwid.md +++ b/docs/version-specific/supported-software/l/likwid.md @@ -4,22 +4,12 @@ search: --- # likwid -Likwid stands for Like I knew what I am doing. This project contributes easy to use command line tools for Linux to support programmers in developing high performance multi threaded programs. +Likwid stands for Like I knew what I am doing. This project contributes easy to use command line tools for Linux to support programmers in developing high performance multi threaded programs. -*homepage*: +*homepage*: version | toolchain --------|---------- -``4.0.1`` | ``GNU/4.9.3-2.25`` -``4.1.0`` | ``GCCcore/4.9.3`` -``4.2.0`` | ``GCCcore/6.3.0`` -``4.2.0`` | ``GCCcore/6.4.0`` -``4.2.0`` | ``foss/2017a`` -``4.2.0`` | ``intel/2017a`` -``4.3.2`` | ``GCCcore/6.4.0`` -``4.3.2`` | ``GCCcore/7.3.0`` -``5.0.1`` | ``GCCcore/8.3.0`` -``5.1.0`` | ``GCCcore/9.3.0`` ``5.2.0`` | ``GCC/10.2.0`` ``5.2.0`` | ``GCC/10.3.0`` ``5.2.0`` | ``GCC/11.2.0`` @@ -30,6 +20,7 @@ version | toolchain ``5.2.2`` | ``GCC/12.3.0`` ``5.3.0`` | ``GCC/12.3.0`` ``5.3.0`` | ``GCC/13.2.0`` +``5.3.0`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/limix.md b/docs/version-specific/supported-software/l/limix.md deleted file mode 100644 index 1cbfad7b14..0000000000 --- a/docs/version-specific/supported-software/l/limix.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# limix - -Limix is a flexible and efficient linear mixed model library with interfaces to Python. Genomic analyses require flexible models that can be adapted to the needs of the user. Limix is smart about how particular models are fitted to save computational cost. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0.4`` | ``-Python-3.6.6`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/line_profiler.md b/docs/version-specific/supported-software/l/line_profiler.md index 062abcef49..0c70d68171 100644 --- a/docs/version-specific/supported-software/l/line_profiler.md +++ b/docs/version-specific/supported-software/l/line_profiler.md @@ -8,13 +8,13 @@ line_profiler is a module for doing line-by-line profiling of functions. kernpro *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.1.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``3.5.1`` | | ``foss/2021b`` -``4.0.0`` | | ``foss/2022a`` -``4.1.1`` | | ``GCCcore/12.2.0`` -``4.1.2`` | | ``GCCcore/13.2.0`` +version | toolchain +--------|---------- +``3.5.1`` | ``foss/2021b`` +``4.0.0`` | ``foss/2022a`` +``4.1.1`` | ``GCCcore/12.2.0`` +``4.1.2`` | ``GCCcore/13.2.0`` +``4.2.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/lit.md b/docs/version-specific/supported-software/l/lit.md index 6fb87c94c5..ea9f99185b 100644 --- a/docs/version-specific/supported-software/l/lit.md +++ b/docs/version-specific/supported-software/l/lit.md @@ -10,7 +10,15 @@ lit is a portable tool for executing LLVM and Clang style test suites, summarizi version | toolchain --------|---------- +``18.1.2`` | ``GCCcore/12.2.0`` ``18.1.2`` | ``GCCcore/12.3.0`` +``18.1.7`` | ``GCCcore/10.3.0`` +``18.1.7`` | ``GCCcore/11.2.0`` +``18.1.7`` | ``GCCcore/11.3.0`` +``18.1.7`` | ``GCCcore/12.2.0`` +``18.1.7`` | ``GCCcore/13.2.0`` +``18.1.7`` | ``GCCcore/13.3.0`` +``18.1.8`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/llama-cpp-python.md b/docs/version-specific/supported-software/l/llama-cpp-python.md new file mode 100644 index 0000000000..0aba5ca8be --- /dev/null +++ b/docs/version-specific/supported-software/l/llama-cpp-python.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# llama-cpp-python + +The main goal of llama.cpp is to enable LLM inference with minimal setup and state-of-the-art performance on a wide range of hardware - locally and in the cloud. Simple Python bindings. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``0.3.2`` | ``-CUDA-12.1.1`` | ``gfbf/2023a`` +``0.3.2`` | | ``gfbf/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/l/llama.cpp.md b/docs/version-specific/supported-software/l/llama.cpp.md new file mode 100644 index 0000000000..ba5f0ffab3 --- /dev/null +++ b/docs/version-specific/supported-software/l/llama.cpp.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# llama.cpp + +Inference of Meta's LLaMA model (and others) in pure C/C++ + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``b4595`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``b4595`` | | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/l/logaddexp.md b/docs/version-specific/supported-software/l/logaddexp.md deleted file mode 100644 index c09bbba9e3..0000000000 --- a/docs/version-specific/supported-software/l/logaddexp.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# logaddexp - -C library that implements the logarithm of the sum of exponentiations. Inspired by NumPy's logaddexp function. - -*homepage*: - -version | toolchain ---------|---------- -``1.0.3`` | ``GCCcore/7.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/lpsolve.md b/docs/version-specific/supported-software/l/lpsolve.md index 86394cda06..d35168c2a2 100644 --- a/docs/version-specific/supported-software/l/lpsolve.md +++ b/docs/version-specific/supported-software/l/lpsolve.md @@ -15,15 +15,8 @@ version | toolchain ``5.5.2.11`` | ``GCC/11.2.0`` ``5.5.2.11`` | ``GCC/11.3.0`` ``5.5.2.11`` | ``GCC/12.2.0`` -``5.5.2.11`` | ``GCC/9.3.0`` -``5.5.2.5`` | ``GCC/6.4.0-2.28`` -``5.5.2.5`` | ``GCC/8.3.0`` -``5.5.2.5`` | ``foss/2018a`` -``5.5.2.5`` | ``iccifort/2017.4.196-GCC-6.4.0-2.28`` -``5.5.2.5`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``5.5.2.5`` | ``iccifort/2019.5.281`` -``5.5.2.5`` | ``intel/2017a`` -``5.5.2.5`` | ``intel/2018b`` +``5.5.2.11`` | ``GCC/12.3.0`` +``5.5.2.11`` | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/lrslib.md b/docs/version-specific/supported-software/l/lrslib.md index 7240f5d739..368069a950 100644 --- a/docs/version-specific/supported-software/l/lrslib.md +++ b/docs/version-specific/supported-software/l/lrslib.md @@ -10,8 +10,6 @@ lrslib is a self-contained ANSI C implementation of the reverse search algorithm version | toolchain --------|---------- -``6.2`` | ``intel/2018b`` -``7.0a`` | ``gompi/2019a`` ``7.2`` | ``gompi/2022a`` ``7.2`` | ``gompi/2023b`` diff --git a/docs/version-specific/supported-software/l/lwgrp.md b/docs/version-specific/supported-software/l/lwgrp.md index b82aaa3e1c..50c3b48141 100644 --- a/docs/version-specific/supported-software/l/lwgrp.md +++ b/docs/version-specific/supported-software/l/lwgrp.md @@ -4,16 +4,12 @@ search: --- # lwgrp -The Light-weight Group Library provides methods for MPI codes to quickly create and destroy process groups +The light-weight group library defines data structures and collective operations to group MPI processes as an ordered set. Such groups are useful as substitutes for MPI communicators when the overhead of communicator creation is too costly. For example, certain sorting algorithms recursively divide processes into subgroups as the sort algorithm progresses. These groups may be different with each invocation, so that it is inefficient to create and destroy communicators during the sort routine. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.0.2`` | ``gompi/2019a`` -``1.0.2`` | ``gompi/2020a`` -``1.0.2`` | ``iimpi/2019a`` -``1.0.2`` | ``iimpi/2020a`` ``1.0.3`` | ``gompi/2020b`` ``1.0.5`` | ``gompi/2022a`` ``1.0.5`` | ``gompi/2023a`` diff --git a/docs/version-specific/supported-software/l/lxml.md b/docs/version-specific/supported-software/l/lxml.md index 84aeee6392..cd8f332c33 100644 --- a/docs/version-specific/supported-software/l/lxml.md +++ b/docs/version-specific/supported-software/l/lxml.md @@ -6,32 +6,19 @@ search: The lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.5.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``3.6.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``3.6.4`` | ``-Python-2.7.12`` | ``intel/2016b`` -``4.0.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``4.1.1`` | ``-Python-2.7.14`` | ``intel/2017b`` -``4.2.0`` | ``-Python-2.7.14`` | ``foss/2018a`` -``4.2.0`` | ``-Python-2.7.14`` | ``intel/2018a`` -``4.2.0`` | ``-Python-3.6.4`` | ``intel/2018a`` -``4.2.5`` | ``-Python-2.7.15`` | ``foss/2018b`` -``4.2.5`` | ``-Python-3.6.6`` | ``foss/2018b`` -``4.2.5`` | ``-Python-2.7.15`` | ``intel/2018b`` -``4.3.3`` | | ``GCCcore/8.2.0`` -``4.4.2`` | | ``GCCcore/8.3.0`` -``4.5.2`` | | ``GCCcore/9.3.0`` -``4.6.2`` | | ``GCCcore/10.2.0`` -``4.6.3`` | | ``GCCcore/10.3.0`` -``4.6.3`` | | ``GCCcore/11.2.0`` -``4.9.1`` | | ``GCCcore/11.3.0`` -``4.9.2`` | | ``GCCcore/12.2.0`` -``4.9.2`` | | ``GCCcore/12.3.0`` -``4.9.3`` | | ``GCCcore/13.2.0`` -``5.3.0`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``4.6.2`` | ``GCCcore/10.2.0`` +``4.6.3`` | ``GCCcore/10.3.0`` +``4.6.3`` | ``GCCcore/11.2.0`` +``4.9.1`` | ``GCCcore/11.3.0`` +``4.9.2`` | ``GCCcore/12.2.0`` +``4.9.2`` | ``GCCcore/12.3.0`` +``4.9.3`` | ``GCCcore/13.2.0`` +``5.3.0`` | ``GCCcore/13.3.0`` +``5.3.0`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/lynx.md b/docs/version-specific/supported-software/l/lynx.md deleted file mode 100644 index d57ec15a24..0000000000 --- a/docs/version-specific/supported-software/l/lynx.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# lynx - -lynx is an alphanumeric display oriented World-Wide Web Client - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.8.9`` | ``-develop`` | ``foss/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/lz4.md b/docs/version-specific/supported-software/l/lz4.md index 9e55611f8b..f76a667425 100644 --- a/docs/version-specific/supported-software/l/lz4.md +++ b/docs/version-specific/supported-software/l/lz4.md @@ -4,19 +4,14 @@ search: --- # lz4 -LZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core. +LZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core. *homepage*: version | toolchain --------|---------- -``1.8.2`` | ``GCCcore/5.4.0`` -``1.8.2`` | ``GCCcore/6.4.0`` -``1.9.0`` | ``GCCcore/7.3.0`` -``1.9.1`` | ``GCCcore/8.2.0`` +``1.10.0`` | ``GCCcore/14.2.0`` ``1.9.2`` | ``GCCcore/10.2.0`` -``1.9.2`` | ``GCCcore/8.3.0`` -``1.9.2`` | ``GCCcore/9.3.0`` ``1.9.3`` | ``GCCcore/10.3.0`` ``1.9.3`` | ``GCCcore/11.2.0`` ``1.9.3`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/m/M4.md b/docs/version-specific/supported-software/m/M4.md index 60248f8096..e702a87933 100644 --- a/docs/version-specific/supported-software/m/M4.md +++ b/docs/version-specific/supported-software/m/M4.md @@ -4,66 +4,16 @@ search: --- # M4 -GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc. +GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc. *homepage*: version | toolchain --------|---------- -``1.4.16`` | ``GCC/4.8.1`` -``1.4.16`` | ``GCC/4.8.2`` -``1.4.16`` | ``system`` -``1.4.17`` | ``GCC/4.8.2`` -``1.4.17`` | ``GCC/4.8.4`` -``1.4.17`` | ``GCC/4.9.2-binutils-2.25`` -``1.4.17`` | ``GCC/4.9.2`` -``1.4.17`` | ``GCC/4.9.3-2.25`` -``1.4.17`` | ``GCC/4.9.3-binutils-2.25`` -``1.4.17`` | ``GCC/4.9.3`` -``1.4.17`` | ``GCC/5.1.0-binutils-2.25`` -``1.4.17`` | ``GCC/5.2.0`` -``1.4.17`` | ``GCC/5.4.0-2.26`` -``1.4.17`` | ``GCCcore/4.9.2`` -``1.4.17`` | ``GCCcore/4.9.3`` -``1.4.17`` | ``GCCcore/4.9.4`` -``1.4.17`` | ``GCCcore/5.3.0`` -``1.4.17`` | ``GCCcore/5.4.0`` -``1.4.17`` | ``GCCcore/6.1.0`` -``1.4.17`` | ``GCCcore/6.2.0`` -``1.4.17`` | ``GNU/4.9.2-2.25`` -``1.4.17`` | ``GNU/4.9.3-2.25`` -``1.4.17`` | ``GNU/5.1.0-2.25`` -``1.4.17`` | ``foss/2016.04`` -``1.4.17`` | ``foss/2016a`` -``1.4.17`` | ``foss/2016b`` -``1.4.17`` | ``gimkl/2.11.5`` -``1.4.17`` | ``intel/2016.02-GCC-4.9`` -``1.4.17`` | ``intel/2016a`` -``1.4.17`` | ``intel/2016b`` -``1.4.17`` | ``iomkl/2016.07`` -``1.4.17`` | ``iomkl/2016.09-GCC-4.9.3-2.25`` ``1.4.17`` | ``system`` -``1.4.18`` | ``GCCcore/10.1.0`` ``1.4.18`` | ``GCCcore/10.2.0`` ``1.4.18`` | ``GCCcore/10.3.0`` ``1.4.18`` | ``GCCcore/11.1.0`` -``1.4.18`` | ``GCCcore/5.3.0`` -``1.4.18`` | ``GCCcore/5.4.0`` -``1.4.18`` | ``GCCcore/5.5.0`` -``1.4.18`` | ``GCCcore/6.3.0`` -``1.4.18`` | ``GCCcore/6.4.0`` -``1.4.18`` | ``GCCcore/7.1.0`` -``1.4.18`` | ``GCCcore/7.2.0`` -``1.4.18`` | ``GCCcore/7.3.0`` -``1.4.18`` | ``GCCcore/7.4.0`` -``1.4.18`` | ``GCCcore/8.1.0`` -``1.4.18`` | ``GCCcore/8.2.0`` -``1.4.18`` | ``GCCcore/8.3.0`` -``1.4.18`` | ``GCCcore/8.4.0`` -``1.4.18`` | ``GCCcore/9.1.0`` -``1.4.18`` | ``GCCcore/9.2.0`` -``1.4.18`` | ``GCCcore/9.3.0`` -``1.4.18`` | ``GCCcore/system`` ``1.4.18`` | ``system`` ``1.4.19`` | ``GCCcore/11.2.0`` ``1.4.19`` | ``GCCcore/11.3.0`` @@ -76,8 +26,6 @@ version | toolchain ``1.4.19`` | ``GCCcore/13.3.0`` ``1.4.19`` | ``GCCcore/14.1.0`` ``1.4.19`` | ``GCCcore/14.2.0`` -``1.4.19`` | ``GCCcore/9.4.0`` -``1.4.19`` | ``GCCcore/9.5.0`` ``1.4.19`` | ``system`` diff --git a/docs/version-specific/supported-software/m/MACH.md b/docs/version-specific/supported-software/m/MACH.md deleted file mode 100644 index 83397caa99..0000000000 --- a/docs/version-specific/supported-software/m/MACH.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MACH - -MACH 1.0 is a Markov Chain based haplotyper that can resolve long haplotypes or infer missing genotypes in samples of unrelated individuals. - -*homepage*: - -version | toolchain ---------|---------- -``1.0.18`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MACS2.md b/docs/version-specific/supported-software/m/MACS2.md index ecacb3b169..f94b4776dd 100644 --- a/docs/version-specific/supported-software/m/MACS2.md +++ b/docs/version-specific/supported-software/m/MACS2.md @@ -6,20 +6,15 @@ search: Model Based Analysis for ChIP-Seq data -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1.1.20160309`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.1.2.1`` | ``-Python-2.7.14`` | ``foss/2017b`` -``2.1.2.1`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.1.2.1`` | ``-Python-2.7.15`` | ``intel/2019a`` -``2.2.5`` | ``-Python-3.6.6`` | ``foss/2018b`` -``2.2.7.1`` | | ``foss/2021a`` -``2.2.7.1`` | | ``foss/2021b`` -``2.2.9.1`` | | ``foss/2022a`` -``2.2.9.1`` | | ``foss/2022b`` -``2.2.9.1`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``2.2.7.1`` | ``foss/2021a`` +``2.2.7.1`` | ``foss/2021b`` +``2.2.9.1`` | ``foss/2022a`` +``2.2.9.1`` | ``foss/2022b`` +``2.2.9.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MAFFT.md b/docs/version-specific/supported-software/m/MAFFT.md index 6d4c82242d..4e202eacd6 100644 --- a/docs/version-specific/supported-software/m/MAFFT.md +++ b/docs/version-specific/supported-software/m/MAFFT.md @@ -4,25 +4,12 @@ search: --- # MAFFT -MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼10,000 sequences), etc. +MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼30,000 sequences), etc. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``7.305`` | ``-with-extensions`` | ``foss/2016b`` -``7.397`` | ``-with-extensions`` | ``intel/2018a`` -``7.427`` | ``-with-extensions`` | ``foss/2018b`` -``7.427`` | ``-with-extensions`` | ``intel/2018b`` -``7.429`` | ``-with-extensions`` | ``GCC/8.2.0-2.31.1`` -``7.453`` | ``-with-extensions`` | ``GCC/8.3.0`` -``7.453`` | ``-with-extensions`` | ``GCC/9.3.0`` -``7.453`` | ``-with-extensions`` | ``gompi/2020a`` -``7.453`` | ``-with-extensions`` | ``iccifort/2019.5.281`` -``7.453`` | ``-with-extensions`` | ``iimpi/2020a`` -``7.470`` | ``-with-extensions`` | ``GCC/9.3.0`` -``7.470`` | ``-with-extensions`` | ``gompi/2020a`` -``7.471`` | ``-with-extensions`` | ``iimpi/2020a`` ``7.475`` | ``-with-extensions`` | ``GCC/10.2.0`` ``7.475`` | ``-with-extensions`` | ``gompi/2020b`` ``7.487`` | ``-with-extensions`` | ``gompi/2021a`` @@ -32,6 +19,7 @@ version | versionsuffix | toolchain ``7.505`` | ``-with-extensions`` | ``GCC/11.3.0`` ``7.505`` | ``-with-extensions`` | ``GCC/12.2.0`` ``7.520`` | ``-with-extensions`` | ``GCC/12.3.0`` +``7.526`` | ``-with-extensions`` | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MAGMA-gene-analysis.md b/docs/version-specific/supported-software/m/MAGMA-gene-analysis.md index a157055911..594cee1af9 100644 --- a/docs/version-specific/supported-software/m/MAGMA-gene-analysis.md +++ b/docs/version-specific/supported-software/m/MAGMA-gene-analysis.md @@ -4,14 +4,12 @@ search: --- # MAGMA-gene-analysis -MAGMA is a tool for gene analysis and generalized gene-set analysis of GWAS data. It can be used to analyse both raw genotype data as well as summary SNP p-values from a previous GWAS or meta-analysis. +MAGMA is a tool for gene analysis and generalized gene-set analysis of GWAS data. It can be used to analyse both raw genotype data as well as summary SNP p-values from a previous GWAS or meta-analysis. *homepage*: version | toolchain --------|---------- -``1.07b`` | ``foss/2018b`` -``1.07bb`` | ``GCC/8.3.0`` ``1.09b`` | ``GCC/11.2.0`` diff --git a/docs/version-specific/supported-software/m/MAJIQ.md b/docs/version-specific/supported-software/m/MAJIQ.md deleted file mode 100644 index f9705f1c39..0000000000 --- a/docs/version-specific/supported-software/m/MAJIQ.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MAJIQ - -MAJIQ and Voila are two software packages that together detect, quantify, and visualize local splicing variations (LSV) from RNA-Seq data. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.1`` | ``-Python-3.6.4`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MARS.md b/docs/version-specific/supported-software/m/MARS.md deleted file mode 100644 index 1237f1260c..0000000000 --- a/docs/version-specific/supported-software/m/MARS.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MARS - -improving Multiple circular sequence Alignment using Refined Sequences - -*homepage*: - -version | toolchain ---------|---------- -``20191101`` | ``GCCcore/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MATES.md b/docs/version-specific/supported-software/m/MATES.md index 0c08832b5c..308da75cb2 100644 --- a/docs/version-specific/supported-software/m/MATES.md +++ b/docs/version-specific/supported-software/m/MATES.md @@ -12,6 +12,9 @@ version | versionsuffix | toolchain --------|---------------|---------- ``0.1.2-20240813`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``0.1.2-20240813`` | | ``foss/2023a`` +``0.1.5-20241121`` | | ``foss/2023b`` +``0.1.5`` | | ``foss/2023b`` +``0.1.8`` | | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MATIO.md b/docs/version-specific/supported-software/m/MATIO.md index 221da7109f..720598fa31 100644 --- a/docs/version-specific/supported-software/m/MATIO.md +++ b/docs/version-specific/supported-software/m/MATIO.md @@ -6,14 +6,10 @@ search: matio is an C library for reading and writing Matlab MAT files. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.5.11`` | ``foss/2017b`` -``1.5.12`` | ``GCCcore/6.4.0`` -``1.5.17`` | ``GCCcore/8.3.0`` -``1.5.19`` | ``GCCcore/9.3.0`` ``1.5.21`` | ``GCCcore/10.2.0`` ``1.5.22`` | ``GCCcore/11.2.0`` ``1.5.23`` | ``GCCcore/11.3.0`` @@ -21,7 +17,6 @@ version | toolchain ``1.5.23`` | ``GCCcore/12.2.0`` ``1.5.26`` | ``GCCcore/12.3.0`` ``1.5.26`` | ``GCCcore/13.2.0`` -``1.5.9`` | ``GCCcore/5.4.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MATLAB-Engine.md b/docs/version-specific/supported-software/m/MATLAB-Engine.md index e9c5de891b..6a9e1ce9e1 100644 --- a/docs/version-specific/supported-software/m/MATLAB-Engine.md +++ b/docs/version-specific/supported-software/m/MATLAB-Engine.md @@ -8,15 +8,10 @@ The MATLAB Engine API for Python provides a package for Python to call MATLAB a *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2018b`` | ``-Python-2.7.14`` | ``foss/2017b`` -``2018b`` | ``-Python-3.6.3`` | ``foss/2017b`` -``2018b`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2018b`` | ``-Python-3.6.3`` | ``intel/2017b`` -``2019b`` | | ``GCCcore/8.3.0`` -``2021a-9.10.1`` | | ``GCCcore/10.2.0`` -``2021b-9.11.19`` | | ``GCCcore/11.2.0`` +version | toolchain +--------|---------- +``2021a-9.10.1`` | ``GCCcore/10.2.0`` +``2021b-9.11.19`` | ``GCCcore/11.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MATLAB.md b/docs/version-specific/supported-software/m/MATLAB.md index 5251ee8b87..c881077b06 100644 --- a/docs/version-specific/supported-software/m/MATLAB.md +++ b/docs/version-specific/supported-software/m/MATLAB.md @@ -6,18 +6,10 @@ search: MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2012b`` | | ``system`` -``2013b`` | | ``system`` -``2015a`` | | ``system`` -``2016a`` | | ``system`` -``2017a`` | | ``system`` -``2018b`` | | ``system`` -``2019b`` | | ``system`` -``2020a`` | | ``system`` ``2020b`` | | ``system`` ``2021a`` | | ``system`` ``2021b`` | | ``system`` @@ -27,6 +19,7 @@ version | versionsuffix | toolchain ``2022b`` | | ``system`` ``2023a`` | | ``system`` ``2023b`` | | ``system`` +``2024b`` | | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MATSim.md b/docs/version-specific/supported-software/m/MATSim.md index 9c427ee700..c68702b5ed 100644 --- a/docs/version-specific/supported-software/m/MATSim.md +++ b/docs/version-specific/supported-software/m/MATSim.md @@ -6,11 +6,10 @@ search: MATSim is an open-source framework to implement large-scale agent-based transport simulations. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``0.8.1`` | ``-Java-1.8.0_112`` | ``intel/2016b`` ``14.0`` | ``-Java-11`` | ``GCCcore/11.2.0`` ``14.0`` | ``-Java-11`` | ``system`` ``15.0`` | ``-Java-17`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/m/MBROLA.md b/docs/version-specific/supported-software/m/MBROLA.md index 93e59ef09b..c6b37b09cd 100644 --- a/docs/version-specific/supported-software/m/MBROLA.md +++ b/docs/version-specific/supported-software/m/MBROLA.md @@ -11,7 +11,6 @@ MBROLA is a speech synthesizer based on the concatenation of diphones. It takes version | versionsuffix | toolchain --------|---------------|---------- ``3.3`` | ``-voices-20200330`` | ``GCCcore/12.3.0`` -``3.3`` | ``-voices-20200330`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MCL.md b/docs/version-specific/supported-software/m/MCL.md index baa08fb4aa..cbcdf2a98d 100644 --- a/docs/version-specific/supported-software/m/MCL.md +++ b/docs/version-specific/supported-software/m/MCL.md @@ -6,23 +6,16 @@ search: The MCL algorithm is short for the Markov Cluster Algorithm, a fast and scalable unsupervised cluster algorithm for graphs (also known as networks) based on simulation of (stochastic) flow in graphs. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``02.063`` | | ``intel/2016b`` -``14.137`` | | ``GCCcore/10.2.0`` -``14.137`` | | ``GCCcore/10.3.0`` -``14.137`` | | ``GCCcore/11.3.0`` -``14.137`` | ``-Perl-5.26.1`` | ``GCCcore/6.4.0`` -``14.137`` | ``-Perl-5.28.0`` | ``GCCcore/7.3.0`` -``14.137`` | | ``GCCcore/8.3.0`` -``14.137`` | | ``GCCcore/9.3.0`` -``14.137`` | | ``foss/2016a`` -``14.137`` | | ``intel/2016b`` -``22.282`` | | ``GCCcore/11.2.0`` -``22.282`` | | ``GCCcore/11.3.0`` -``22.282`` | | ``GCCcore/12.3.0`` +version | toolchain +--------|---------- +``14.137`` | ``GCCcore/10.2.0`` +``14.137`` | ``GCCcore/10.3.0`` +``14.137`` | ``GCCcore/11.3.0`` +``22.282`` | ``GCCcore/11.2.0`` +``22.282`` | ``GCCcore/11.3.0`` +``22.282`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MCR.md b/docs/version-specific/supported-software/m/MCR.md index 13c7f5b62d..ff6d7cd1b3 100644 --- a/docs/version-specific/supported-software/m/MCR.md +++ b/docs/version-specific/supported-software/m/MCR.md @@ -6,21 +6,10 @@ search: The MATLAB Runtime is a standalone set of shared libraries that enables the execution of compiled MATLAB applications or components on computers that do not have MATLAB installed. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``R2013a`` | | ``system`` -``R2013b`` | | ``system`` -``R2014a`` | | ``system`` -``R2014b`` | | ``system`` -``R2015a`` | | ``system`` -``R2015b`` | | ``system`` -``R2016a`` | | ``system`` -``R2016b`` | | ``system`` -``R2018a`` | | ``system`` -``R2018b`` | | ``system`` -``R2019a`` | | ``system`` ``R2019b`` | ``.8`` | ``system`` ``R2020a`` | ``.6`` | ``system`` ``R2020b`` | ``.5`` | ``system`` @@ -32,8 +21,11 @@ version | versionsuffix | toolchain ``R2022a`` | ``.1`` | ``system`` ``R2022a`` | ``.5`` | ``system`` ``R2022a`` | | ``system`` +``R2022b`` | ``.10`` | ``system`` ``R2023a`` | | ``system`` +``R2023b`` | ``.9`` | ``system`` ``R2024a`` | ``.4`` | ``system`` +``R2024b`` | | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MDAnalysis.md b/docs/version-specific/supported-software/m/MDAnalysis.md index 4e7538a479..3d4cc5ca1d 100644 --- a/docs/version-specific/supported-software/m/MDAnalysis.md +++ b/docs/version-specific/supported-software/m/MDAnalysis.md @@ -8,18 +8,16 @@ MDAnalysis is an object-oriented Python library to analyze trajectories from mol *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.20.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.20.1`` | ``-Python-3.7.4`` | ``intel/2019b`` -``1.1.1`` | | ``foss/2020b`` -``2.0.0`` | | ``foss/2021a`` -``2.0.0`` | | ``foss/2021b`` -``2.0.0`` | | ``intel/2021b`` -``2.2.0`` | | ``foss/2022a`` -``2.4.2`` | | ``foss/2021a`` -``2.4.2`` | | ``foss/2022b`` -``2.7.0`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``1.1.1`` | ``foss/2020b`` +``2.0.0`` | ``foss/2021a`` +``2.0.0`` | ``foss/2021b`` +``2.0.0`` | ``intel/2021b`` +``2.2.0`` | ``foss/2022a`` +``2.4.2`` | ``foss/2021a`` +``2.4.2`` | ``foss/2022b`` +``2.7.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MDBM.md b/docs/version-specific/supported-software/m/MDBM.md deleted file mode 100644 index b335162863..0000000000 --- a/docs/version-specific/supported-software/m/MDBM.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MDBM - -MDBM is a super-fast memory-mapped key/value store - -*homepage*: - -version | toolchain ---------|---------- -``4.13.0`` | ``GCCcore/6.4.0`` -``4.13.0`` | ``GCCcore/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MDI.md b/docs/version-specific/supported-software/m/MDI.md index d85a87c1cf..d8d5833c3a 100644 --- a/docs/version-specific/supported-software/m/MDI.md +++ b/docs/version-specific/supported-software/m/MDI.md @@ -4,7 +4,7 @@ search: --- # MDI -The MolSSI Driver Interface (MDI) project provides a standardized API for fast, on-the-fly communication between computational chemistry codes. This greatly simplifies the process of implementing methods that require the cooperation of multiple software packages and enables developers to write a single implementation that works across many different codes. The API is sufficiently general to support a wide variety of techniques, including QM/MM, ab initio MD, machine learning, advanced sampling, and path integral MD, while also being straightforwardly extensible. Communication between codes is handled by the MDI Library, which enables tight coupling between codes using either the MPI or TCP/IP methods. +The MolSSI Driver Interface (MDI) project provides a standardized API for fast, on-the-fly communication between computational chemistry codes. This greatly simplifies the process of implementing methods that require the cooperation of multiple software packages and enables developers to write a single implementation that works across many different codes. The API is sufficiently general to support a wide variety of techniques, including QM/MM, ab initio MD, machine learning, advanced sampling, and path integral MD, while also being straightforwardly extensible. Communication between codes is handled by the MDI Library, which enables tight coupling between codes using either the MPI or TCP/IP methods. *homepage*: @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``1.4.16`` | ``gompi/2022b`` ``1.4.26`` | ``gompi/2023a`` +``1.4.29`` | ``gompi/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MDSplus-Java.md b/docs/version-specific/supported-software/m/MDSplus-Java.md deleted file mode 100644 index c51af199a9..0000000000 --- a/docs/version-specific/supported-software/m/MDSplus-Java.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MDSplus-Java - -MDSplus is a set of software tools for data acquisition and storage and a methodology for management of complex scientific data. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``7.96.12`` | ``-Java-13`` | ``GCCcore/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MDSplus-Python.md b/docs/version-specific/supported-software/m/MDSplus-Python.md deleted file mode 100644 index f0a5ab3c89..0000000000 --- a/docs/version-specific/supported-software/m/MDSplus-Python.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MDSplus-Python - -MDSplus is a set of software tools for data acquisition and storage and a methodology for management of complex scientific data. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``7.96.12`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MDSplus.md b/docs/version-specific/supported-software/m/MDSplus.md deleted file mode 100644 index b8a1b9a295..0000000000 --- a/docs/version-specific/supported-software/m/MDSplus.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MDSplus - -MDSplus is a set of software tools for data acquisition and storage and a methodology for management of complex scientific data. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``7.0.67`` | ``-Java-1.7.0_79-Python-2.7.11`` | ``foss/2016a`` -``7.46.1`` | | ``foss/2018a`` -``7.96.12`` | | ``GCCcore/9.3.0`` -``7.96.8`` | | ``GCCcore/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MDStress.md b/docs/version-specific/supported-software/m/MDStress.md new file mode 100644 index 0000000000..e62ff94e73 --- /dev/null +++ b/docs/version-specific/supported-software/m/MDStress.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# MDStress + +MDStress library enable the calculation of local stress fields from molecular dynamics simulations + +*homepage*: + +version | toolchain +--------|---------- +``20191228`` | ``gfbf/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/m/MDTraj.md b/docs/version-specific/supported-software/m/MDTraj.md index ce7d68da2d..8a2017e639 100644 --- a/docs/version-specific/supported-software/m/MDTraj.md +++ b/docs/version-specific/supported-software/m/MDTraj.md @@ -6,25 +6,19 @@ search: Read, write and analyze MD trajectories with only a few lines of Python code. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.9.1`` | ``-Python-3.6.3`` | ``intel/2017b`` -``1.9.2`` | ``-Python-3.6.6`` | ``intel/2018b`` -``1.9.3`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.9.3`` | ``-Python-3.7.4`` | ``intel/2019b`` -``1.9.4`` | ``-Python-3.8.2`` | ``foss/2020a`` -``1.9.4`` | ``-Python-3.8.2`` | ``intel/2020a`` -``1.9.5`` | | ``foss/2020b`` -``1.9.5`` | | ``fosscuda/2020b`` -``1.9.5`` | | ``intel/2020b`` -``1.9.7`` | | ``foss/2021a`` -``1.9.7`` | | ``foss/2021b`` -``1.9.7`` | | ``foss/2022a`` -``1.9.7`` | | ``intel/2021b`` -``1.9.7`` | | ``intel/2022a`` -``1.9.9`` | | ``gfbf/2023a`` +version | toolchain +--------|---------- +``1.9.5`` | ``foss/2020b`` +``1.9.5`` | ``fosscuda/2020b`` +``1.9.5`` | ``intel/2020b`` +``1.9.7`` | ``foss/2021a`` +``1.9.7`` | ``foss/2021b`` +``1.9.7`` | ``foss/2022a`` +``1.9.7`` | ``intel/2021b`` +``1.9.7`` | ``intel/2022a`` +``1.9.9`` | ``gfbf/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MEGA.md b/docs/version-specific/supported-software/m/MEGA.md index b97b449299..a4d2168bda 100644 --- a/docs/version-specific/supported-software/m/MEGA.md +++ b/docs/version-specific/supported-software/m/MEGA.md @@ -12,7 +12,6 @@ version | toolchain --------|---------- ``10.0.5`` | ``system`` ``11.0.10`` | ``system`` -``7.0.20-1`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MEGACC.md b/docs/version-specific/supported-software/m/MEGACC.md deleted file mode 100644 index 77489f7941..0000000000 --- a/docs/version-specific/supported-software/m/MEGACC.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MEGACC - -MEGA-Computing Core - Sophisticated and user-friendly software suite for analyzing DNA and protein sequence data from species and populations. - -*homepage*: - -version | toolchain ---------|---------- -``7.0.18-1`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MEGAHIT.md b/docs/version-specific/supported-software/m/MEGAHIT.md index 3294a98219..d2a410fd30 100644 --- a/docs/version-specific/supported-software/m/MEGAHIT.md +++ b/docs/version-specific/supported-software/m/MEGAHIT.md @@ -4,27 +4,20 @@ search: --- # MEGAHIT -An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph +An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.1.2`` | ``-Python-2.7.14`` | ``foss/2018a`` -``1.1.3`` | ``-Python-2.7.14`` | ``foss/2017b`` -``1.1.3`` | ``-Python-3.6.3`` | ``foss/2017b`` -``1.1.3`` | ``-Python-2.7.14`` | ``foss/2018a`` -``1.1.4`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.1.4`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.2.8`` | | ``GCCcore/8.2.0`` ``1.2.9`` | ``-Python-2.7.18`` | ``GCCcore/10.2.0`` ``1.2.9`` | | ``GCCcore/10.3.0`` ``1.2.9`` | | ``GCCcore/11.2.0`` ``1.2.9`` | | ``GCCcore/11.3.0`` ``1.2.9`` | | ``GCCcore/12.2.0`` +``1.2.9`` | ``-Python-2.7.18`` | ``GCCcore/12.3.0`` ``1.2.9`` | | ``GCCcore/12.3.0`` -``1.2.9`` | | ``GCCcore/9.3.0`` -``1.2.9`` | | ``foss/2018b`` +``1.2.9`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MEM.md b/docs/version-specific/supported-software/m/MEM.md deleted file mode 100644 index 964134855c..0000000000 --- a/docs/version-specific/supported-software/m/MEM.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MEM - -Marker Enrichment Modeling (MEM) is a tool designed to calculate enrichment scores. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20191023`` | | ``foss/2019b`` -``20191023`` | ``-R-4.0.0`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MEME.md b/docs/version-specific/supported-software/m/MEME.md index 4e3c23f22b..76261dbefa 100644 --- a/docs/version-specific/supported-software/m/MEME.md +++ b/docs/version-specific/supported-software/m/MEME.md @@ -6,21 +6,15 @@ search: The MEME Suite allows you to: * discover motifs using MEME, DREME (DNA only) or GLAM2 on groups of related DNA or protein sequences, * search sequence databases with motifs using MAST, FIMO, MCAST or GLAM2SCAN, * compare a motif to all motifs in a database of motifs, * associate motifs with Gene Ontology terms via their putative target genes, and * analyse motif enrichment using SpaMo or CentriMo. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``5.0.4`` | ``-Perl-5.26.0-Python-2.7.14`` | ``foss/2017b`` -``5.0.4`` | ``-Perl-5.26.0-Python-3.6.3`` | ``foss/2017b`` -``5.0.4`` | ``-Perl-5.26.0-Python-2.7.14`` | ``intel/2017b`` -``5.0.4`` | ``-Perl-5.26.0-Python-3.6.3`` | ``intel/2017b`` -``5.1.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``5.1.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``5.1.1`` | ``-Python-3.7.4`` | ``intel/2019b`` ``5.4.1`` | | ``GCC/10.3.0`` ``5.4.1`` | ``-Python-2.7.18`` | ``gompi/2021b`` ``5.4.1`` | | ``gompi/2021b`` ``5.5.4`` | | ``gompi/2022b`` +``5.5.7`` | | ``gompi/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MERCKX.md b/docs/version-specific/supported-software/m/MERCKX.md deleted file mode 100644 index 9df53b0849..0000000000 --- a/docs/version-specific/supported-software/m/MERCKX.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MERCKX - -Multilingual Entity/Resource Combiner & Knowledge eXtractor - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20170330`` | ``-Python-2.7.13`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MESS.md b/docs/version-specific/supported-software/m/MESS.md deleted file mode 100644 index 437f9c8e97..0000000000 --- a/docs/version-specific/supported-software/m/MESS.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MESS - -Master Equation System Solver (MESS) - -*homepage*: - -version | toolchain ---------|---------- -``0.1.6`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/METIS.md b/docs/version-specific/supported-software/m/METIS.md index cd4e05092e..746db72ea0 100644 --- a/docs/version-specific/supported-software/m/METIS.md +++ b/docs/version-specific/supported-software/m/METIS.md @@ -4,13 +4,12 @@ search: --- # METIS -METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes. +METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``5.0.2`` | | ``gimkl/2.11.5`` ``5.1.0`` | | ``GCCcore/10.2.0`` ``5.1.0`` | | ``GCCcore/10.3.0`` ``5.1.0`` | | ``GCCcore/11.2.0`` @@ -20,22 +19,6 @@ version | versionsuffix | toolchain ``5.1.0`` | | ``GCCcore/12.3.0`` ``5.1.0`` | | ``GCCcore/13.2.0`` ``5.1.0`` | | ``GCCcore/13.3.0`` -``5.1.0`` | | ``GCCcore/6.4.0`` -``5.1.0`` | | ``GCCcore/7.3.0`` -``5.1.0`` | | ``GCCcore/8.2.0`` -``5.1.0`` | | ``GCCcore/8.3.0`` -``5.1.0`` | | ``GCCcore/9.3.0`` -``5.1.0`` | ``-32bitIDX`` | ``foss/2016a`` -``5.1.0`` | | ``foss/2016a`` -``5.1.0`` | | ``foss/2016b`` -``5.1.0`` | | ``foss/2017a`` -``5.1.0`` | | ``foss/2018b`` -``5.1.0`` | ``-32bitIDX`` | ``gimkl/2.11.5`` -``5.1.0`` | | ``gimkl/2.11.5`` -``5.1.0`` | ``-32bitIDX`` | ``intel/2016a`` -``5.1.0`` | | ``intel/2016a`` -``5.1.0`` | | ``intel/2016b`` -``5.1.0`` | | ``intel/2017a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MFiX.md b/docs/version-specific/supported-software/m/MFiX.md new file mode 100644 index 0000000000..865d3b44a6 --- /dev/null +++ b/docs/version-specific/supported-software/m/MFiX.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# MFiX + +The National Energy Technology Laboratory’s (NETL’s) computational fluid dynamics (CFD) code, MFiX-Multiphase Flow with Interphase eXchanges - is central to the laboratory’s multiphase flow reactor modeling efforts. This open-source software has over three decades of development history and more than 7,000 registered users worldwide. MFiX has become the standard for comparing, implementing, and evaluating multiphase flow constitutive models and has been applied to an extremely diverse range of multiphase flows applications. The successes achieved in modeling complex multiphase flow systems have led to new and improved key attributes such as drag, polydispersity, attrition, and agglomeration models, among other significant advances. + +*homepage*: + +version | toolchain +--------|---------- +``24.4.1`` | ``intel/2023b`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/m/MIGRATE-N.md b/docs/version-specific/supported-software/m/MIGRATE-N.md index bde2564540..b40d2c8ce2 100644 --- a/docs/version-specific/supported-software/m/MIGRATE-N.md +++ b/docs/version-specific/supported-software/m/MIGRATE-N.md @@ -4,14 +4,12 @@ search: --- # MIGRATE-N -Migrate estimates population parameters, effective population sizes and migration rates of n populations, using genetic data. It uses a coalescent theory approach taking into account history of mutations and uncertainty of the genealogy. +Migrate estimates population parameters, effective population sizes and migration rates of n populations, using genetic data. It uses a coalescent theory approach taking into account history of mutations and uncertainty of the genealogy. -*homepage*: +*homepage*: version | toolchain --------|---------- -``4.2.14`` | ``foss/2018a`` -``4.2.8`` | ``foss/2016a`` ``5.0.4`` | ``foss/2021b`` diff --git a/docs/version-specific/supported-software/m/MINC.md b/docs/version-specific/supported-software/m/MINC.md deleted file mode 100644 index 1803c7a50c..0000000000 --- a/docs/version-specific/supported-software/m/MINC.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MINC - -Medical Image NetCDF or MINC isn't netCDF. - -*homepage*: - -version | toolchain ---------|---------- -``2.4.03`` | ``foss/2017b`` -``2.4.03`` | ``foss/2018a`` -``2.4.03`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MIRA.md b/docs/version-specific/supported-software/m/MIRA.md index 3c92bbba1d..a9fab62c09 100644 --- a/docs/version-specific/supported-software/m/MIRA.md +++ b/docs/version-specific/supported-software/m/MIRA.md @@ -4,18 +4,13 @@ search: --- # MIRA -MIRA is a whole genome shotgun and EST sequence assembler for Sanger, 454, Solexa (Illumina), IonTorrent data and PacBio (the latter at the moment only CCS and error-corrected CLR reads). +MIRA is a whole genome shotgun and EST sequence assembler for Sanger, 454, Solexa (Illumina), IonTorrent data and PacBio (the latter at the moment only CCS and error-corrected CLR reads). -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.0.2`` | ``-Python-2.7.11`` | ``foss/2016a`` -``4.0.2`` | | ``foss/2018b`` -``4.0.2`` | | ``gompi/2019b`` -``4.0.2`` | | ``intel/2017b`` -``4.9.6`` | | ``intel/2017b`` -``5.0rc2`` | | ``foss/2020b`` +version | toolchain +--------|---------- +``5.0rc2`` | ``foss/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MITObim.md b/docs/version-specific/supported-software/m/MITObim.md index 3886e6fbf7..c99edcd147 100644 --- a/docs/version-specific/supported-software/m/MITObim.md +++ b/docs/version-specific/supported-software/m/MITObim.md @@ -4,15 +4,13 @@ search: --- # MITObim -The MITObim procedure (mitochondrial baiting and iterative mapping) represents a highly efficient approach to assembling novel mitochondrial genomes of non-model organisms directly from total genomic DNA derived NGS reads. +The MITObim procedure (mitochondrial baiting and iterative mapping) represents a highly efficient approach to assembling novel mitochondrial genomes of non-model organisms directly from total genomic DNA derived NGS reads. *homepage*: version | toolchain --------|---------- -``1.9.1`` | ``foss/2018b`` ``1.9.1`` | ``foss/2020b`` -``1.9.1`` | ``gompi/2019b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MITgcmutils.md b/docs/version-specific/supported-software/m/MITgcmutils.md index abc9ad65b3..5c4d3f109b 100644 --- a/docs/version-specific/supported-software/m/MITgcmutils.md +++ b/docs/version-specific/supported-software/m/MITgcmutils.md @@ -4,7 +4,7 @@ search: --- # MITgcmutils -A numerical model designed for study of the atmosphere, ocean, and climate, MITgcm’s flexible non-hydrostatic formulation enables it to efficiently simulate fluid phenomena over a wide range of scales; its adjoint capabilities enable it to be applied to sensitivity questions and to parameter and state estimation problems. By employing fluid equation isomorphisms, a single dynamical kernel can be used to simulate flow of both the atmosphere and ocean. The model is developed to perform efficiently on a wide variety of computational platforms. +A numerical model designed for study of the atmosphere, ocean, and climate, MITgcm’s flexible non-hydrostatic formulation enables it to efficiently simulate fluid phenomena over a wide range of scales; its adjoint capabilities enable it to be applied to sensitivity questions and to parameter and state estimation problems. By employing fluid equation isomorphisms, a single dynamical kernel can be used to simulate flow of both the atmosphere and ocean. The model is developed to perform efficiently on a wide variety of computational platforms. *homepage*: diff --git a/docs/version-specific/supported-software/m/MLC.md b/docs/version-specific/supported-software/m/MLC.md deleted file mode 100644 index 39e8725d31..0000000000 --- a/docs/version-specific/supported-software/m/MLC.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MLC - -Intel Memory Latency Checker (Intel MLC) is a tool used to measure memory latencies and b/w, and how they change with increasing load on the system. - -*homepage*: - -version | toolchain ---------|---------- -``3.0`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MLflow.md b/docs/version-specific/supported-software/m/MLflow.md index c1da03a078..2133912626 100644 --- a/docs/version-specific/supported-software/m/MLflow.md +++ b/docs/version-specific/supported-software/m/MLflow.md @@ -11,6 +11,7 @@ MLflow is a platform to streamline machine learning development, including track version | toolchain --------|---------- ``2.10.2`` | ``gfbf/2023a`` +``2.18.0`` | ``gfbf/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MLxtend.md b/docs/version-specific/supported-software/m/MLxtend.md deleted file mode 100644 index 7dd111f66b..0000000000 --- a/docs/version-specific/supported-software/m/MLxtend.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MLxtend - -Mlxtend (machine learning extensions) is a Python library of useful tools for the day-to-day data science tasks. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.17.3`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MMSEQ.md b/docs/version-specific/supported-software/m/MMSEQ.md deleted file mode 100644 index 780760ab17..0000000000 --- a/docs/version-specific/supported-software/m/MMSEQ.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MMSEQ - -The MMSEQ package contains a collection of statistical tools for analysing RNA-seq expression data. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.8`` | ``-linux64-static`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MMseqs2.md b/docs/version-specific/supported-software/m/MMseqs2.md index 7d0bd1989f..c41af0caaa 100644 --- a/docs/version-specific/supported-software/m/MMseqs2.md +++ b/docs/version-specific/supported-software/m/MMseqs2.md @@ -6,14 +6,10 @@ search: MMseqs2: ultra fast and sensitive search and clustering suite -*homepage*: +*homepage*: version | toolchain --------|---------- -``1-c7a89`` | ``foss/2016b`` -``10-6d92c`` | ``gompi/2019b`` -``10-6d92c`` | ``iimpi/2019b`` -``11-e1a1c`` | ``iimpi/2019b`` ``13-45111-20211006`` | ``gompi/2020b`` ``13-45111-20211019`` | ``gompi/2020b`` ``13-45111`` | ``gompi/2020b`` @@ -21,8 +17,6 @@ version | toolchain ``13-45111`` | ``gompi/2021b`` ``14-7e284`` | ``gompi/2022a`` ``14-7e284`` | ``gompi/2023a`` -``5-9375b`` | ``intel/2018a`` -``8-fac81`` | ``intel/2018b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MOABS.md b/docs/version-specific/supported-software/m/MOABS.md deleted file mode 100644 index 282bd9e133..0000000000 --- a/docs/version-specific/supported-software/m/MOABS.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MOABS - -MOABS: MOdel based Analysis of Bisulfite Sequencing data - -*homepage*: - -version | toolchain ---------|---------- -``1.3.9.6`` | ``gompi/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MOB-suite.md b/docs/version-specific/supported-software/m/MOB-suite.md deleted file mode 100644 index c980201fc1..0000000000 --- a/docs/version-specific/supported-software/m/MOB-suite.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MOB-suite - -Software tools for clustering, reconstruction and typing of plasmids from draft assemblies - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.1.0`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MOLGW.md b/docs/version-specific/supported-software/m/MOLGW.md new file mode 100644 index 0000000000..4665f54cf9 --- /dev/null +++ b/docs/version-specific/supported-software/m/MOLGW.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# MOLGW + +MOLGW is a code that implements the many-body perturbation theory (MBPT) to describe the excited electronic states in finite systems (atoms, molecules, clusters). It most importantly implements the approximation for the self-energy and the Bethe-Salpeter equation for the optical excitations. MOLGW comes with a fully functional density-functional theory (DFT) code to prepare the subsequent MBPT runs. Standard local and semi-local approximations to DFT are available, as well as several hybrid functionals and range-separated hybrid functionals. MOLGW uses a Gaussian-type orbitals basis set so to reuse all the standard quantum-chemistry tools. + +*homepage*: + +version | toolchain +--------|---------- +``3.3`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/m/MONAI.md b/docs/version-specific/supported-software/m/MONAI.md index f93517c9cb..f66c5b08a5 100644 --- a/docs/version-specific/supported-software/m/MONAI.md +++ b/docs/version-specific/supported-software/m/MONAI.md @@ -17,6 +17,7 @@ version | versionsuffix | toolchain ``1.3.0`` | | ``foss/2022b`` ``1.3.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``1.3.0`` | | ``foss/2023a`` +``1.4.0`` | | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MOOSE.md b/docs/version-specific/supported-software/m/MOOSE.md deleted file mode 100644 index b70a2637d6..0000000000 --- a/docs/version-specific/supported-software/m/MOOSE.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MOOSE - -The Multiphysics Object-Oriented Simulation Environment (MOOSE) is a finite-element, multiphysics framework primarily developed by Idaho National Laboratory - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2021-05-18`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MPB.md b/docs/version-specific/supported-software/m/MPB.md index a169f3d28e..9acc5c1ca4 100644 --- a/docs/version-specific/supported-software/m/MPB.md +++ b/docs/version-specific/supported-software/m/MPB.md @@ -8,12 +8,9 @@ MPB is a free and open-source software package for computing the band structure *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.11.1`` | | ``foss/2020b`` -``1.6.2`` | ``-Python-2.7.14`` | ``foss/2017b`` -``1.6.2`` | ``-Python-2.7.14`` | ``foss/2018a`` -``1.6.2`` | ``-Python-2.7.14`` | ``intel/2018a`` +version | toolchain +--------|---------- +``1.11.1`` | ``foss/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MPC.md b/docs/version-specific/supported-software/m/MPC.md index 69101a833f..11a3b32018 100644 --- a/docs/version-specific/supported-software/m/MPC.md +++ b/docs/version-specific/supported-software/m/MPC.md @@ -8,22 +8,16 @@ Gnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily h *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.3`` | ``-MPFR-3.1.6`` | ``foss/2017b`` -``1.0.3`` | | ``intel/2017a`` -``1.0.3`` | ``-MPFR-3.1.6`` | ``intel/2017b`` -``1.1.0`` | | ``GCC/8.3.0`` -``1.1.0`` | | ``GCC/9.3.0`` -``1.1.0`` | | ``GCCcore/9.3.0`` -``1.2.1`` | | ``GCCcore/10.2.0`` -``1.2.1`` | | ``GCCcore/10.3.0`` -``1.2.1`` | | ``GCCcore/11.2.0`` -``1.2.1`` | | ``GCCcore/11.3.0`` -``1.3.1`` | | ``GCCcore/12.2.0`` -``1.3.1`` | | ``GCCcore/12.3.0`` -``1.3.1`` | | ``GCCcore/13.2.0`` -``1.3.1`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``1.2.1`` | ``GCCcore/10.2.0`` +``1.2.1`` | ``GCCcore/10.3.0`` +``1.2.1`` | ``GCCcore/11.2.0`` +``1.2.1`` | ``GCCcore/11.3.0`` +``1.3.1`` | ``GCCcore/12.2.0`` +``1.3.1`` | ``GCCcore/12.3.0`` +``1.3.1`` | ``GCCcore/13.2.0`` +``1.3.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MPFR.md b/docs/version-specific/supported-software/m/MPFR.md index c757d58160..8a89354d60 100644 --- a/docs/version-specific/supported-software/m/MPFR.md +++ b/docs/version-specific/supported-software/m/MPFR.md @@ -4,25 +4,12 @@ search: --- # MPFR -The MPFR library is a C library for multiple-precision floating-point computations with correct rounding. +The MPFR library is a C library for multiple-precision floating-point computations with correct rounding. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.4.2`` | ``system`` -``3.1.4`` | ``foss/2016a`` -``3.1.4`` | ``foss/2016b`` -``3.1.4`` | ``intel/2016a`` -``3.1.4`` | ``intel/2016b`` -``3.1.5`` | ``GCCcore/6.4.0`` -``3.1.5`` | ``intel/2017a`` -``3.1.6`` | ``GCCcore/6.4.0`` -``4.0.1`` | ``GCCcore/6.4.0`` -``4.0.1`` | ``GCCcore/7.3.0`` -``4.0.2`` | ``GCCcore/8.2.0`` -``4.0.2`` | ``GCCcore/8.3.0`` -``4.0.2`` | ``GCCcore/9.3.0`` ``4.1.0`` | ``GCCcore/10.2.0`` ``4.1.0`` | ``GCCcore/10.3.0`` ``4.1.0`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/m/MPICH.md b/docs/version-specific/supported-software/m/MPICH.md index 9fa987396c..5e2ffe5353 100644 --- a/docs/version-specific/supported-software/m/MPICH.md +++ b/docs/version-specific/supported-software/m/MPICH.md @@ -4,18 +4,13 @@ search: --- # MPICH -MPICH v3.x is an open source high-performance MPI 3.0 implementation. It does not support InfiniBand (use MVAPICH2 with InfiniBand devices). +MPICH is a high-performance and widely portable implementation of the Message Passing Interface (MPI) standard (MPI-1, MPI-2 and MPI-3). -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.0.4`` | ``GCC/4.8.1`` -``3.2`` | ``GCC/4.9.3-2.25`` -``3.2`` | ``GCC/7.2.0-2.29`` -``3.2.1`` | ``GCC/7.2.0-2.29`` ``3.3.2`` | ``GCC/10.2.0`` -``3.3.2`` | ``GCC/9.3.0`` ``3.4.2`` | ``GCC/10.3.0`` ``4.2.1`` | ``GCC/12.3.0`` ``4.2.2`` | ``GCC/13.3.0`` diff --git a/docs/version-specific/supported-software/m/MPICH2.md b/docs/version-specific/supported-software/m/MPICH2.md deleted file mode 100644 index 5ea2b739a6..0000000000 --- a/docs/version-specific/supported-software/m/MPICH2.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MPICH2 - -MPICH v3.x is an open source high-performance MPI 3.0 implementation. It does not support InfiniBand (use MVAPICH2 with InfiniBand devices). - -*homepage*: - -version | toolchain ---------|---------- -``1.1`` | ``GCC/4.8.1`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MPJ-Express.md b/docs/version-specific/supported-software/m/MPJ-Express.md deleted file mode 100644 index b030ef1606..0000000000 --- a/docs/version-specific/supported-software/m/MPJ-Express.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MPJ-Express - -MPJ Express is an open source Java message passing library that allows application developers to write and execute parallel applications for multicore processors and compute clusters/clouds. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.44`` | ``-Java-1.8.0_92`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MRCPP.md b/docs/version-specific/supported-software/m/MRCPP.md index 8f6e9b8db4..642068d2da 100644 --- a/docs/version-specific/supported-software/m/MRCPP.md +++ b/docs/version-specific/supported-software/m/MRCPP.md @@ -10,7 +10,6 @@ MultiResolution Computation Program Package version | toolchain --------|---------- -``1.3.6`` | ``foss/2020a`` ``1.4.1`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/m/MRChem.md b/docs/version-specific/supported-software/m/MRChem.md index 641bca9e21..01e78ea293 100644 --- a/docs/version-specific/supported-software/m/MRChem.md +++ b/docs/version-specific/supported-software/m/MRChem.md @@ -8,10 +8,9 @@ MRChem is a numerical real-space code for molecular electronic structure calcula *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``1.1.1`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``1.1.1`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MRIcron.md b/docs/version-specific/supported-software/m/MRIcron.md deleted file mode 100644 index b7ec5fda4e..0000000000 --- a/docs/version-specific/supported-software/m/MRIcron.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MRIcron - -MRIcron allows viewing of medical images. It includes tools to complement SPM and FSL. Native format is NIFTI but includes a conversion program (see dcm2nii) for converting DICOM images. Features layers, ROIs, and volume rendering. - -*homepage*: - -version | toolchain ---------|---------- -``1.0.20180614`` | ``system`` -``20150601`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MRtrix.md b/docs/version-specific/supported-software/m/MRtrix.md index 8ec8560104..c986225951 100644 --- a/docs/version-specific/supported-software/m/MRtrix.md +++ b/docs/version-specific/supported-software/m/MRtrix.md @@ -8,17 +8,10 @@ MRtrix provides a set of tools to perform diffusion-weighted MR white-matter tra *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.3.14`` | ``-Python-2.7.11`` | ``intel/2016a`` -``0.3.15`` | ``-Python-2.7.12`` | ``intel/2016b`` -``3.0-rc-20191217`` | ``-Python-2.7.16`` | ``foss/2019b`` -``3.0-rc-20191217`` | ``-Python-3.7.4`` | ``foss/2019b`` -``3.0.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``3.0.3`` | | ``foss/2021a`` -``3.0.4`` | | ``foss/2022b`` -``3.0_RC2`` | ``-Python-2.7.13`` | ``foss/2017a`` -``3.0_RC3`` | ``-Python-2.7.14`` | ``intel/2018a`` +version | toolchain +--------|---------- +``3.0.3`` | ``foss/2021a`` +``3.0.4`` | ``foss/2022b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MSM.md b/docs/version-specific/supported-software/m/MSM.md deleted file mode 100644 index 9b2f5babe6..0000000000 --- a/docs/version-specific/supported-software/m/MSM.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MSM - -Multimodal Surface Matching with Higher order Clique Reduction - -*homepage*: - -version | toolchain ---------|---------- -``1.0`` | ``foss/2017b`` -``1.0`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MSPC.md b/docs/version-specific/supported-software/m/MSPC.md deleted file mode 100644 index d799e06f4f..0000000000 --- a/docs/version-specific/supported-software/m/MSPC.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MSPC - -Using combined evidence from replicates to evaluate ChIP-seq peaks - -*homepage*: - -version | toolchain ---------|---------- -``3.3.1`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MTL4.md b/docs/version-specific/supported-software/m/MTL4.md deleted file mode 100644 index 0a615c4f7c..0000000000 --- a/docs/version-specific/supported-software/m/MTL4.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MTL4 - -The Matrix Template Library 4 incorporates the most modern programming techniques to provide an easy and intuitive interface to users while enabling optimal performance. The natural mathematical notation in MTL4 empowers all engineers and scientists to implement their algorithms and models in minimal time. All technical aspects are encapsulated in the library. - -*homepage*: - -version | toolchain ---------|---------- -``4.0.8878`` | ``system`` -``4.0.9555`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MUMPS.md b/docs/version-specific/supported-software/m/MUMPS.md index fe1aa48e35..4cfd628557 100644 --- a/docs/version-specific/supported-software/m/MUMPS.md +++ b/docs/version-specific/supported-software/m/MUMPS.md @@ -6,20 +6,10 @@ search: A parallel sparse direct solver -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``5.1.2`` | ``-metis`` | ``foss/2017b`` -``5.2.1`` | ``-metis`` | ``foss/2018b`` -``5.2.1`` | ``-metis-seq`` | ``foss/2019a`` -``5.2.1`` | ``-metis`` | ``foss/2019a`` -``5.2.1`` | ``-metis`` | ``foss/2019b`` -``5.2.1`` | ``-metis`` | ``foss/2020a`` -``5.2.1`` | ``-metis-seq`` | ``intel/2019a`` -``5.2.1`` | ``-metis`` | ``intel/2019a`` -``5.2.1`` | ``-metis`` | ``intel/2019b`` -``5.2.1`` | ``-metis`` | ``intel/2020a`` ``5.3.5`` | ``-metis`` | ``foss/2020b`` ``5.3.5`` | ``-metis`` | ``intel/2020b`` ``5.4.0`` | ``-metis`` | ``foss/2021a`` @@ -33,6 +23,7 @@ version | versionsuffix | toolchain ``5.6.1`` | ``-metis`` | ``foss/2023b`` ``5.6.1`` | ``-metis-seq`` | ``gomkl/2023a`` ``5.7.2`` | ``-parmetis`` | ``foss/2023b`` +``5.7.2`` | ``-metis`` | ``foss/2024a`` ``5.7.2`` | ``-parmetis`` | ``intel/2023b`` diff --git a/docs/version-specific/supported-software/m/MUMmer.md b/docs/version-specific/supported-software/m/MUMmer.md index c76e2e473c..ac8eaf9b97 100644 --- a/docs/version-specific/supported-software/m/MUMmer.md +++ b/docs/version-specific/supported-software/m/MUMmer.md @@ -11,12 +11,8 @@ MUMmer is a system for rapidly aligning entire genomes, whether in complete or version | toolchain --------|---------- ``3.23`` | ``GCCcore/10.3.0`` -``3.23`` | ``GCCcore/9.3.0`` -``3.23`` | ``foss/2016b`` ``4.0.0beta2`` | ``GCCcore/10.2.0`` ``4.0.0beta2`` | ``GCCcore/11.2.0`` -``4.0.0beta2`` | ``GCCcore/9.3.0`` -``4.0.0beta2`` | ``foss/2018b`` ``4.0.0rc1`` | ``GCCcore/11.2.0`` ``4.0.0rc1`` | ``GCCcore/11.3.0`` ``4.0.0rc1`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/m/MUSCLE.md b/docs/version-specific/supported-software/m/MUSCLE.md index ddbb71cac4..63882a5b19 100644 --- a/docs/version-specific/supported-software/m/MUSCLE.md +++ b/docs/version-specific/supported-software/m/MUSCLE.md @@ -8,30 +8,18 @@ MUSCLE is one of the best-performing multiple alignment programs according to p *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.8.1551`` | | ``GCC/10.2.0`` -``3.8.1551`` | | ``GCC/8.2.0-2.31.1`` -``3.8.1551`` | | ``GCC/8.3.0`` -``3.8.31`` | | ``GCC/7.3.0-2.30`` -``3.8.31`` | | ``GCCcore/10.2.0`` -``3.8.31`` | | ``GCCcore/10.3.0`` -``3.8.31`` | | ``GCCcore/11.2.0`` -``3.8.31`` | | ``GCCcore/9.3.0`` -``3.8.31`` | | ``foss/2016a`` -``3.8.31`` | | ``foss/2017b`` -``3.8.31`` | | ``foss/2018a`` -``3.8.31`` | ``-i86linux64`` | ``system`` -``3.8.31`` | | ``intel/2016a`` -``3.8.31`` | | ``intel/2017b`` -``3.8.31`` | | ``intel/2018a`` -``3.8.31`` | | ``intel/2018b`` -``5.0.1428`` | | ``GCCcore/10.3.0`` -``5.1`` | | ``GCCcore/11.2.0`` -``5.1.0`` | | ``GCCcore/10.3.0`` -``5.1.0`` | | ``GCCcore/11.3.0`` -``5.1.0`` | | ``GCCcore/12.2.0`` -``5.1.0`` | | ``GCCcore/12.3.0`` +version | toolchain +--------|---------- +``3.8.1551`` | ``GCC/10.2.0`` +``3.8.31`` | ``GCCcore/10.2.0`` +``3.8.31`` | ``GCCcore/10.3.0`` +``3.8.31`` | ``GCCcore/11.2.0`` +``5.0.1428`` | ``GCCcore/10.3.0`` +``5.1`` | ``GCCcore/11.2.0`` +``5.1.0`` | ``GCCcore/10.3.0`` +``5.1.0`` | ``GCCcore/11.3.0`` +``5.1.0`` | ``GCCcore/12.2.0`` +``5.1.0`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MUST.md b/docs/version-specific/supported-software/m/MUST.md index 691fbbdfd1..7840be4ac5 100644 --- a/docs/version-specific/supported-software/m/MUST.md +++ b/docs/version-specific/supported-software/m/MUST.md @@ -8,12 +8,10 @@ MUST detects usage errors of the Message Passing Interface (MPI) and reports the *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.6`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.6`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.7.1`` | | ``foss/2020b`` -``1.7.2`` | | ``foss/2021a`` +version | toolchain +--------|---------- +``1.7.1`` | ``foss/2020b`` +``1.7.2`` | ``foss/2021a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MVAPICH2.md b/docs/version-specific/supported-software/m/MVAPICH2.md deleted file mode 100644 index de45bc7ca3..0000000000 --- a/docs/version-specific/supported-software/m/MVAPICH2.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MVAPICH2 - -This is an MPI 3.0 implementation. It is based on MPICH2 and MVICH. - -*homepage*: - -version | toolchain ---------|---------- -``2.0.1`` | ``GCC/4.8.4`` -``2.1`` | ``GCC/4.9.3-2.25`` -``2.2b`` | ``GCC/4.9.3-2.25`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MView.md b/docs/version-specific/supported-software/m/MView.md index 6a43aa79d1..82467ec08b 100644 --- a/docs/version-specific/supported-software/m/MView.md +++ b/docs/version-specific/supported-software/m/MView.md @@ -4,7 +4,7 @@ search: --- # MView -MView reformats the results of a sequence database search or a multiple alignment, optionally adding HTML markup. +MView reformats the results of a sequence database search or a multiple alignment, optionally adding HTML markup. *homepage*: diff --git a/docs/version-specific/supported-software/m/MXNet.md b/docs/version-specific/supported-software/m/MXNet.md index 6781a81f12..3a4b87cf05 100644 --- a/docs/version-specific/supported-software/m/MXNet.md +++ b/docs/version-specific/supported-software/m/MXNet.md @@ -8,10 +8,9 @@ Flexible and Efficient Library for Deep Learning *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.9.3`` | ``-Python-2.7.12-R-3.3.3`` | ``foss/2016b`` -``1.9.1`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``1.9.1`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MaSuRCA.md b/docs/version-specific/supported-software/m/MaSuRCA.md index 94d7e32315..c87f43fc5c 100644 --- a/docs/version-specific/supported-software/m/MaSuRCA.md +++ b/docs/version-specific/supported-software/m/MaSuRCA.md @@ -4,18 +4,12 @@ search: --- # MaSuRCA -MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph and Overlap-Layout-Consensus (OLC) approaches. MaSuRCA can assemble data sets containing only short reads from Illumina sequencing or a mixture of short reads and long reads (Sanger, 454, Pacbio and Nanopore). +MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph and Overlap-Layout-Consensus (OLC) approaches. MaSuRCA can assemble data sets containing only short reads from Illumina sequencing or a mixture of short reads and long reads (Sanger, 454, Pacbio and Nanopore). -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``3.2.2`` | | ``foss/2016a`` -``3.2.2`` | ``-Perl-5.26.0`` | ``foss/2017b`` -``3.2.4`` | | ``foss/2018a`` -``3.2.5`` | ``-Perl-5.26.0`` | ``foss/2017b`` -``3.3.1`` | ``-Perl-5.28.0`` | ``foss/2018b`` -``4.0.1`` | ``-Perl-5.30.2`` | ``foss/2020a`` ``4.0.9`` | ``-Perl-5.32.1`` | ``foss/2021a`` ``4.1.0`` | | ``GCC/11.3.0`` diff --git a/docs/version-specific/supported-software/m/MagresPython.md b/docs/version-specific/supported-software/m/MagresPython.md deleted file mode 100644 index 35b97d5d7a..0000000000 --- a/docs/version-specific/supported-software/m/MagresPython.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MagresPython - -MagresPython is a Python library for parsing the CCP-NC ab-initio magnetic resonance file format. This is used in the latest version of the CASTEP and Quantum ESPRESSO (PWSCF) codes. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20160329`` | ``-Python-2.7.15`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/Mako.md b/docs/version-specific/supported-software/m/Mako.md index e49e5b76fe..4a9958d6b9 100644 --- a/docs/version-specific/supported-software/m/Mako.md +++ b/docs/version-specific/supported-software/m/Mako.md @@ -8,37 +8,16 @@ A super-fast templating language that borrows the best ideas from the existing t *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.4`` | ``-Python-2.7.12`` | ``foss/2016b`` -``1.0.4`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.0.6`` | ``-Python-2.7.13`` | ``foss/2017a`` -``1.0.6`` | ``-Python-2.7.13`` | ``intel/2017a`` -``1.0.7`` | ``-Python-2.7.14`` | ``foss/2017b`` -``1.0.7`` | ``-Python-2.7.14`` | ``foss/2018a`` -``1.0.7`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.0.7`` | ``-Python-2.7.14`` | ``fosscuda/2017b`` -``1.0.7`` | ``-Python-2.7.14`` | ``fosscuda/2018a`` -``1.0.7`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` -``1.0.7`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` -``1.0.7`` | ``-Python-2.7.14`` | ``intel/2017b`` -``1.0.7`` | ``-Python-2.7.14`` | ``intel/2018.01`` -``1.0.7`` | ``-Python-2.7.14`` | ``intel/2018a`` -``1.0.7`` | ``-Python-3.6.4`` | ``intel/2018a`` -``1.0.7`` | ``-Python-2.7.15`` | ``intel/2018b`` -``1.0.7`` | ``-Python-2.7.14`` | ``intelcuda/2017b`` -``1.0.7`` | ``-Python-2.7.14`` | ``iomkl/2018a`` -``1.0.8`` | | ``GCCcore/8.2.0`` -``1.1.0`` | | ``GCCcore/8.3.0`` -``1.1.2`` | | ``GCCcore/9.3.0`` -``1.1.3`` | | ``GCCcore/10.2.0`` -``1.1.4`` | | ``GCCcore/10.3.0`` -``1.1.4`` | | ``GCCcore/11.2.0`` -``1.2.0`` | | ``GCCcore/11.3.0`` -``1.2.4`` | | ``GCCcore/12.2.0`` -``1.2.4`` | | ``GCCcore/12.3.0`` -``1.2.4`` | | ``GCCcore/13.2.0`` -``1.3.5`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``1.1.3`` | ``GCCcore/10.2.0`` +``1.1.4`` | ``GCCcore/10.3.0`` +``1.1.4`` | ``GCCcore/11.2.0`` +``1.2.0`` | ``GCCcore/11.3.0`` +``1.2.4`` | ``GCCcore/12.2.0`` +``1.2.4`` | ``GCCcore/12.3.0`` +``1.2.4`` | ``GCCcore/13.2.0`` +``1.3.5`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/Mamba.md b/docs/version-specific/supported-software/m/Mamba.md index e6963bdef9..398fb62902 100644 --- a/docs/version-specific/supported-software/m/Mamba.md +++ b/docs/version-specific/supported-software/m/Mamba.md @@ -4,7 +4,7 @@ search: --- # Mamba -Mamba is a fast, robust, and cross-platform package manager. It runs on Windows, OS X and Linux (ARM64 and PPC64LE included) and is fully compatible with conda packages and supports most of conda's commands. +Mamba is a fast, robust, and cross-platform package manager. It runs on Windows, OS X and Linux (ARM64 and PPC64LE included) and is fully compatible with conda packages and supports most of conda's commands. *homepage*: diff --git a/docs/version-specific/supported-software/m/MapSplice.md b/docs/version-specific/supported-software/m/MapSplice.md deleted file mode 100644 index 32cd4cdbae..0000000000 --- a/docs/version-specific/supported-software/m/MapSplice.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MapSplice - -MapSplice is a software for mapping RNA-seq data to reference genome for splice junction discovery that depends only on reference genome, and not on any further annotations. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.2.1`` | ``-Python-2.7.12`` | ``foss/2016b`` -``2.2.1`` | ``-Python-2.7.15`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/Maple.md b/docs/version-specific/supported-software/m/Maple.md index e3e23ce103..183162ac3b 100644 --- a/docs/version-specific/supported-software/m/Maple.md +++ b/docs/version-specific/supported-software/m/Maple.md @@ -4,14 +4,12 @@ search: --- # Maple -Maple combines the world's most powerful mathematical computation engine with an intuitive, 'clickable' user interface. +Maple combines the world's most powerful mathematical computation engine with an intuitive, 'clickable' user interface. -*homepage*: +*homepage*: version | toolchain --------|---------- -``15`` | ``system`` -``2017.2`` | ``system`` ``2022.1`` | ``system`` diff --git a/docs/version-specific/supported-software/m/Maq.md b/docs/version-specific/supported-software/m/Maq.md deleted file mode 100644 index c124a62083..0000000000 --- a/docs/version-specific/supported-software/m/Maq.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Maq - -Maq is a software that builds mapping assemblies from short reads generated by the next-generation sequencing machines. - -*homepage*: - -version | toolchain ---------|---------- -``0.7.0`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MariaDB-connector-c.md b/docs/version-specific/supported-software/m/MariaDB-connector-c.md index f35f144487..861b88dec5 100644 --- a/docs/version-specific/supported-software/m/MariaDB-connector-c.md +++ b/docs/version-specific/supported-software/m/MariaDB-connector-c.md @@ -10,15 +10,7 @@ MariaDB Connector/C is used to connect applications developed in C/C++ to MariaD version | toolchain --------|---------- -``2.3.4`` | ``foss/2017b`` -``2.3.4`` | ``intel/2017b`` -``2.3.5`` | ``intel/2018a`` -``2.3.5`` | ``iomkl/2018a`` -``2.3.7`` | ``GCCcore/8.2.0`` -``2.3.7`` | ``GCCcore/8.3.0`` -``2.3.7`` | ``foss/2018b`` ``3.1.11`` | ``GCCcore/10.2.0`` -``3.1.7`` | ``GCCcore/9.3.0`` ``3.2.2`` | ``GCCcore/10.3.0`` diff --git a/docs/version-specific/supported-software/m/MariaDB.md b/docs/version-specific/supported-software/m/MariaDB.md index 83b6436c82..78d7ff75ba 100644 --- a/docs/version-specific/supported-software/m/MariaDB.md +++ b/docs/version-specific/supported-software/m/MariaDB.md @@ -4,30 +4,19 @@ search: --- # MariaDB -MariaDB An enhanced, drop-in replacement for MySQL. +MariaDB is an enhanced, drop-in replacement for MySQL. Included engines: myISAM, Aria, InnoDB, RocksDB, TokuDB, OQGraph, Mroonga. *homepage*: version | toolchain --------|---------- -``10.0.21`` | ``GNU/4.9.3-2.25`` -``10.1.13`` | ``intel/2016a`` -``10.1.14`` | ``foss/2016a`` -``10.1.14`` | ``intel/2016a`` -``10.1.17`` | ``intel/2016b`` -``10.1.24`` | ``intel/2017a`` ``10.11.2`` | ``GCC/12.2.0`` -``10.2.11`` | ``foss/2017b`` -``10.2.11`` | ``intel/2017b`` -``10.3.10`` | ``foss/2018b`` -``10.3.14`` | ``foss/2019a`` -``10.3.7`` | ``intel/2018a`` -``10.4.13`` | ``gompi/2019b`` ``10.5.8`` | ``GCC/10.2.0`` ``10.6.4`` | ``GCC/10.3.0`` ``10.6.4`` | ``GCC/11.2.0`` ``10.9.3`` | ``GCC/11.3.0`` ``11.6.0`` | ``GCC/12.3.0`` +``11.7.0`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/Mash.md b/docs/version-specific/supported-software/m/Mash.md index 4db8895ab1..d1315485bf 100644 --- a/docs/version-specific/supported-software/m/Mash.md +++ b/docs/version-specific/supported-software/m/Mash.md @@ -10,14 +10,13 @@ Fast genome and metagenome distance estimation using MinHash version | toolchain --------|---------- -``2.0`` | ``foss/2018a`` -``2.1`` | ``foss/2018b`` -``2.2`` | ``GCC/9.3.0`` ``2.3`` | ``GCC/10.3.0`` ``2.3`` | ``GCC/11.2.0`` ``2.3`` | ``GCC/11.3.0`` ``2.3`` | ``GCC/12.2.0`` ``2.3`` | ``GCC/12.3.0`` +``2.3`` | ``GCC/13.2.0`` +``2.3`` | ``GCC/13.3.0`` ``2.3`` | ``intel-compilers/2021.4.0`` diff --git a/docs/version-specific/supported-software/c/C3D.md b/docs/version-specific/supported-software/m/MashMap.md similarity index 83% rename from docs/version-specific/supported-software/c/C3D.md rename to docs/version-specific/supported-software/m/MashMap.md index b8e62d897a..0d4a442ba2 100644 --- a/docs/version-specific/supported-software/c/C3D.md +++ b/docs/version-specific/supported-software/m/MashMap.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# C3D +# MashMap -Convert3D Medical Image Processing Tool +A fast approximate aligner for long DNA sequences. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.0.0`` | ``system`` +``3.1.3`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/Mashtree.md b/docs/version-specific/supported-software/m/Mashtree.md index ccfea6e69b..0d5f348b34 100644 --- a/docs/version-specific/supported-software/m/Mashtree.md +++ b/docs/version-specific/supported-software/m/Mashtree.md @@ -11,6 +11,7 @@ Create a tree using Mash distances. version | toolchain --------|---------- ``1.4.6`` | ``GCC/12.2.0`` +``1.4.6`` | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MathGL.md b/docs/version-specific/supported-software/m/MathGL.md deleted file mode 100644 index 94dbf6e7ea..0000000000 --- a/docs/version-specific/supported-software/m/MathGL.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MathGL - -MathGL is ... a library for making high-quality scientific graphics under Linux and Windows; a library for the fast data plotting and data processing of large data arrays; a library for working in window and console modes and for easy embedding into other programs; a library with large and growing set of graphics. - -*homepage*: - -version | toolchain ---------|---------- -``2.4.1`` | ``foss/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MathWorksServiceHost.md b/docs/version-specific/supported-software/m/MathWorksServiceHost.md new file mode 100644 index 0000000000..e32721ccae --- /dev/null +++ b/docs/version-specific/supported-software/m/MathWorksServiceHost.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# MathWorksServiceHost + +MathWorks Service Host is a collection of background processes that provide required services to MATLAB and other MathWorks products. Starting from MATLAB Release 2024a, MATLAB requires MathWorks Service Host. + +*homepage*: <> + +version | toolchain +--------|---------- +``2024.13.0.2`` | ``system`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/m/Mathematica.md b/docs/version-specific/supported-software/m/Mathematica.md index fe350abb12..d42bbb5a8c 100644 --- a/docs/version-specific/supported-software/m/Mathematica.md +++ b/docs/version-specific/supported-software/m/Mathematica.md @@ -6,21 +6,13 @@ search: Mathematica is a computational software program used in many scientific, engineering, mathematical and computing fields. -*homepage*: +*homepage*: version | toolchain --------|---------- -``10.0.2`` | ``system`` -``10.1.0`` | ``system`` -``10.4.1`` | ``system`` -``11.0.1`` | ``system`` -``11.1.1`` | ``system`` -``11.3.0`` | ``system`` -``12.0.0`` | ``system`` ``12.1.1`` | ``system`` ``13.0.0`` | ``system`` ``13.1.0`` | ``system`` -``9.0.1`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/Maven.md b/docs/version-specific/supported-software/m/Maven.md index 3fb50891d0..14e6a4c524 100644 --- a/docs/version-specific/supported-software/m/Maven.md +++ b/docs/version-specific/supported-software/m/Maven.md @@ -6,16 +6,10 @@ search: Binary maven install, Apache Maven is a software project management and comprehension tool. Based on the concept of a project object model (POM), Maven can manage a project's build, reporting and documentation from a central piece of information. -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.2.3`` | ``system`` -``3.3.3`` | ``system`` -``3.3.9`` | ``system`` -``3.5.0`` | ``system`` -``3.5.2`` | ``system`` -``3.6.0`` | ``system`` ``3.6.3`` | ``system`` ``3.9.7`` | ``system`` diff --git a/docs/version-specific/supported-software/m/MaxBin.md b/docs/version-specific/supported-software/m/MaxBin.md index 46b23bc053..db642d9810 100644 --- a/docs/version-specific/supported-software/m/MaxBin.md +++ b/docs/version-specific/supported-software/m/MaxBin.md @@ -4,17 +4,16 @@ search: --- # MaxBin -MaxBin is software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm. +MaxBin is software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2.2.6`` | ``-Perl-5.28.0`` | ``foss/2018b`` -``2.2.7`` | ``-Perl-5.28.1`` | ``GCC/8.2.0-2.31.1`` ``2.2.7`` | | ``gompi/2020b`` ``2.2.7`` | | ``gompi/2021a`` ``2.2.7`` | | ``gompi/2021b`` +``2.2.7`` | ``-Python-2.7.18`` | ``gompi/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MaxQuant.md b/docs/version-specific/supported-software/m/MaxQuant.md index bdc776242b..208178d571 100644 --- a/docs/version-specific/supported-software/m/MaxQuant.md +++ b/docs/version-specific/supported-software/m/MaxQuant.md @@ -6,14 +6,13 @@ search: MaxQuant is a quantitative proteomics software package designed for analyzing large mass-spectrometric data sets. It is specifically aimed at high-resolution MS data. Several labeling techniques as well as label-free quantification are supported. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.6.10.43`` | ``foss/2018b`` ``2.0.3.0`` | ``GCCcore/11.2.0`` ``2.2.0.0`` | ``GCCcore/11.2.0`` -``2.4.2.0`` | ``system`` +``2.6.7.0`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MedPy.md b/docs/version-specific/supported-software/m/MedPy.md index f361b04641..678e4bb264 100644 --- a/docs/version-specific/supported-software/m/MedPy.md +++ b/docs/version-specific/supported-software/m/MedPy.md @@ -8,11 +8,10 @@ MedPy is a library and script collection for medical image processing in Python, *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.4.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.4.0`` | | ``foss/2020b`` -``0.4.0`` | | ``fosscuda/2020b`` +version | toolchain +--------|---------- +``0.4.0`` | ``foss/2020b`` +``0.4.0`` | ``fosscuda/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/Meep.md b/docs/version-specific/supported-software/m/Meep.md index f8b641950b..738c1658ba 100644 --- a/docs/version-specific/supported-software/m/Meep.md +++ b/docs/version-specific/supported-software/m/Meep.md @@ -8,14 +8,9 @@ Meep (or MEEP) is a free finite-difference time-domain (FDTD) simulation softwar *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.26.0`` | | ``foss/2020b`` -``1.3`` | | ``foss/2016a`` -``1.4.3`` | | ``intel/2020a`` -``1.6.0`` | ``-Python-2.7.14`` | ``foss/2017b`` -``1.6.0`` | ``-Python-2.7.14`` | ``foss/2018a`` -``1.6.0`` | ``-Python-2.7.14`` | ``intel/2018a`` +version | toolchain +--------|---------- +``1.26.0`` | ``foss/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/Meld.md b/docs/version-specific/supported-software/m/Meld.md deleted file mode 100644 index 956d52e59a..0000000000 --- a/docs/version-specific/supported-software/m/Meld.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Meld - -Meld is a visual diff and merge tool targeted at developers. Meld helps you compare files, directories, and version controlled projects. It provides two- and three-way comparison of both files and directories, and has support for many popular version control systems. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.20.1`` | ``-Python-3.7.2`` | ``GCCcore/8.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/Mercurial.md b/docs/version-specific/supported-software/m/Mercurial.md index 88411bd50f..a7c1f473ee 100644 --- a/docs/version-specific/supported-software/m/Mercurial.md +++ b/docs/version-specific/supported-software/m/Mercurial.md @@ -6,17 +6,15 @@ search: Mercurial is a free, distributed source control management tool. It efficiently handles projects of any size and offers an easy and intuitive interface. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.8.3`` | ``-Python-2.7.11`` | ``foss/2016a`` -``5.7.1`` | | ``GCCcore/10.2.0`` -``5.7.1`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` -``5.8`` | | ``GCCcore/10.3.0`` -``6.2`` | | ``GCCcore/11.3.0`` -``6.4.5`` | | ``GCCcore/12.3.0`` -``6.8.1`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``5.7.1`` | ``GCCcore/10.2.0`` +``5.8`` | ``GCCcore/10.3.0`` +``6.2`` | ``GCCcore/11.3.0`` +``6.4.5`` | ``GCCcore/12.3.0`` +``6.8.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/Mesa.md b/docs/version-specific/supported-software/m/Mesa.md index 352ae61590..650ddada43 100644 --- a/docs/version-specific/supported-software/m/Mesa.md +++ b/docs/version-specific/supported-software/m/Mesa.md @@ -10,30 +10,6 @@ Mesa is an open-source implementation of the OpenGL specification - a system fo version | toolchain --------|---------- -``11.1.2`` | ``foss/2016a`` -``11.1.2`` | ``gimkl/2.11.5`` -``11.1.2`` | ``intel/2016a`` -``11.2.1`` | ``foss/2016a`` -``11.2.1`` | ``intel/2016a`` -``12.0.2`` | ``foss/2016b`` -``12.0.2`` | ``intel/2016b`` -``17.0.2`` | ``foss/2017a`` -``17.0.2`` | ``intel/2017a`` -``17.2.4`` | ``intel/2017b`` -``17.2.4`` | ``intelcuda/2017b`` -``17.2.5`` | ``foss/2017b`` -``17.2.5`` | ``fosscuda/2017b`` -``17.3.6`` | ``foss/2018a`` -``17.3.6`` | ``fosscuda/2018a`` -``17.3.6`` | ``intel/2018a`` -``17.3.6`` | ``iomkl/2018a`` -``18.1.1`` | ``foss/2018b`` -``18.1.1`` | ``fosscuda/2018b`` -``18.1.1`` | ``intel/2018b`` -``19.0.1`` | ``GCCcore/8.2.0`` -``19.1.7`` | ``GCCcore/8.3.0`` -``19.2.1`` | ``GCCcore/8.3.0`` -``20.0.2`` | ``GCCcore/9.3.0`` ``20.2.1`` | ``GCCcore/10.2.0`` ``21.1.1`` | ``GCCcore/10.3.0`` ``21.1.7`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/m/Meson.md b/docs/version-specific/supported-software/m/Meson.md index 6415f395f4..d4355139b2 100644 --- a/docs/version-specific/supported-software/m/Meson.md +++ b/docs/version-specific/supported-software/m/Meson.md @@ -8,29 +8,18 @@ Meson is a cross-platform build system designed to be both as fast and as user f *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.43.0`` | ``-Python-3.6.3`` | ``intel/2017b`` -``0.46.1`` | ``-Python-3.6.4`` | ``foss/2018a`` -``0.48.1`` | ``-Python-3.6.4`` | ``foss/2018a`` -``0.48.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.48.1`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` -``0.48.1`` | ``-Python-3.6.4`` | ``intel/2018a`` -``0.50.0`` | ``-Python-3.7.2`` | ``GCCcore/8.2.0`` -``0.51.2`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``0.53.1`` | ``-Python-3.6.3`` | ``intel/2017b`` -``0.53.2`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` -``0.55.1`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` -``0.55.3`` | | ``GCCcore/10.2.0`` -``0.58.0`` | | ``GCCcore/10.3.0`` -``0.58.2`` | | ``GCCcore/11.2.0`` -``0.59.1`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``0.62.1`` | | ``GCCcore/11.3.0`` -``0.64.0`` | | ``GCCcore/12.2.0`` -``1.1.1`` | | ``GCCcore/12.3.0`` -``1.2.3`` | | ``GCCcore/13.2.0`` -``1.3.1`` | | ``GCCcore/12.3.0`` -``1.4.0`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``0.55.3`` | ``GCCcore/10.2.0`` +``0.58.0`` | ``GCCcore/10.3.0`` +``0.58.2`` | ``GCCcore/11.2.0`` +``0.62.1`` | ``GCCcore/11.3.0`` +``0.64.0`` | ``GCCcore/12.2.0`` +``1.1.1`` | ``GCCcore/12.3.0`` +``1.2.3`` | ``GCCcore/13.2.0`` +``1.3.1`` | ``GCCcore/12.3.0`` +``1.4.0`` | ``GCCcore/13.3.0`` +``1.6.1`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/Mesquite.md b/docs/version-specific/supported-software/m/Mesquite.md index aa032f2350..a32e6a4968 100644 --- a/docs/version-specific/supported-software/m/Mesquite.md +++ b/docs/version-specific/supported-software/m/Mesquite.md @@ -12,11 +12,6 @@ version | toolchain --------|---------- ``2.3.0`` | ``GCCcore/10.2.0`` ``2.3.0`` | ``GCCcore/12.3.0`` -``2.3.0`` | ``GCCcore/6.4.0`` -``2.3.0`` | ``GCCcore/8.3.0`` -``2.3.0`` | ``gimkl/2.11.5`` -``2.3.0`` | ``intel/2016a`` -``2.3.0`` | ``intel/2017a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MetaBAT.md b/docs/version-specific/supported-software/m/MetaBAT.md index 3447c48d79..6cb0a90bb0 100644 --- a/docs/version-specific/supported-software/m/MetaBAT.md +++ b/docs/version-specific/supported-software/m/MetaBAT.md @@ -4,18 +4,17 @@ search: --- # MetaBAT -An efficient tool for accurately reconstructing single genomes from complex microbial communities +MetaBAT: A robust statistical framework for reconstructing genomes from metagenomic data *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2.12.1`` | ``-Python-2.7.15`` | ``foss/2018b`` -``2.14`` | | ``gompi/2019a`` ``2.15`` | | ``GCC/11.2.0`` ``2.15`` | ``-Python-2.7.18`` | ``gompi/2020b`` ``2.15`` | | ``gompi/2021a`` ``2.15`` | | ``gompi/2021b`` +``2.17`` | | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MetaMorpheus.md b/docs/version-specific/supported-software/m/MetaMorpheus.md index 940482ca4b..f1f78a67a1 100644 --- a/docs/version-specific/supported-software/m/MetaMorpheus.md +++ b/docs/version-specific/supported-software/m/MetaMorpheus.md @@ -10,7 +10,6 @@ MetaMorpheus is a bottom-up proteomics database search software with integrated version | toolchain --------|---------- -``0.0.320`` | ``GCCcore/10.3.0`` ``1.0.5`` | ``system`` diff --git a/docs/version-specific/supported-software/m/MetaPhlAn.md b/docs/version-specific/supported-software/m/MetaPhlAn.md index 41381f4b48..621cd3db22 100644 --- a/docs/version-specific/supported-software/m/MetaPhlAn.md +++ b/docs/version-specific/supported-software/m/MetaPhlAn.md @@ -8,10 +8,9 @@ MetaPhlAn is a computational tool for profiling the composition of microbial co *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0.9`` | ``-Python-3.8.2`` | ``foss/2020a`` -``4.0.6`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``4.0.6`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MetaPhlAn2.md b/docs/version-specific/supported-software/m/MetaPhlAn2.md deleted file mode 100644 index b8ad555ed7..0000000000 --- a/docs/version-specific/supported-software/m/MetaPhlAn2.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MetaPhlAn2 - -MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.7.8`` | ``-Python-2.7.12`` | ``foss/2016b`` -``2.7.8`` | ``-Python-3.6.6`` | ``foss/2018b`` -``2.7.8`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MetaboAnalystR.md b/docs/version-specific/supported-software/m/MetaboAnalystR.md deleted file mode 100644 index 59f87aa40d..0000000000 --- a/docs/version-specific/supported-software/m/MetaboAnalystR.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MetaboAnalystR - -MetaboAnalystR contains the R functions and libraries underlying the popular MetaboAnalyst web server, including > 500 functions for metabolomic data analysis, visualization, and functional interpretation. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0.1-20190827`` | ``-R-3.6.0`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/Metagenome-Atlas.md b/docs/version-specific/supported-software/m/Metagenome-Atlas.md deleted file mode 100644 index 4ee24dbd44..0000000000 --- a/docs/version-specific/supported-software/m/Metagenome-Atlas.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Metagenome-Atlas - -Metagenome-atlas is a easy-to-use metagenomic pipeline based on snakemake. It handles all steps from QC, Assembly, Binning, to Annotation. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.4.3`` | ``-Python-3.8.2`` | ``intel/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/Metal.md b/docs/version-specific/supported-software/m/Metal.md index 41a3ab0c7a..f47c40c8cf 100644 --- a/docs/version-specific/supported-software/m/Metal.md +++ b/docs/version-specific/supported-software/m/Metal.md @@ -10,7 +10,6 @@ Metal - Meta Analysis Helper. The METAL software is designed to facilitate meta- version | toolchain --------|---------- -``2011-03-25`` | ``foss/2016a`` ``2020-05-05`` | ``GCC/10.2.0`` diff --git a/docs/version-specific/supported-software/m/Metaxa2.md b/docs/version-specific/supported-software/m/Metaxa2.md deleted file mode 100644 index 2e1d885c70..0000000000 --- a/docs/version-specific/supported-software/m/Metaxa2.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Metaxa2 - -Metaxa2 -- Identifies Small Subunit (SSU) rRNAs and classifies them taxonomically - -*homepage*: - -version | toolchain ---------|---------- -``2.2`` | ``gompi/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MethylDackel.md b/docs/version-specific/supported-software/m/MethylDackel.md index 39ebb117d9..cf2605970e 100644 --- a/docs/version-specific/supported-software/m/MethylDackel.md +++ b/docs/version-specific/supported-software/m/MethylDackel.md @@ -10,8 +10,6 @@ A (mostly) universal methylation extractor for BS-seq experiments. version | toolchain --------|---------- -``0.4.0`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``0.5.0`` | ``iccifort/2019.5.281`` ``0.6.1`` | ``GCC/11.2.0`` diff --git a/docs/version-specific/supported-software/m/MiGEC.md b/docs/version-specific/supported-software/m/MiGEC.md index 33e31bc3ba..512c11b4ca 100644 --- a/docs/version-specific/supported-software/m/MiGEC.md +++ b/docs/version-specific/supported-software/m/MiGEC.md @@ -4,13 +4,12 @@ search: --- # MiGEC -MIGEC is a software pipeline that facilitates processing and analysis of immune repertoire sequencing data generated using molecular barcoding technique +MIGEC is a software pipeline that facilitates processing and analysis of immune repertoire sequencing data generated using molecular barcoding technique *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.2.8`` | ``-Java-1.8.0_162`` | ``system`` ``1.2.9`` | ``-Java-1.8`` | ``system`` diff --git a/docs/version-specific/supported-software/m/MiXCR.md b/docs/version-specific/supported-software/m/MiXCR.md index dcafef54d5..5ef6d5cb2b 100644 --- a/docs/version-specific/supported-software/m/MiXCR.md +++ b/docs/version-specific/supported-software/m/MiXCR.md @@ -4,16 +4,14 @@ search: --- # MiXCR -MiXCR processes big immunome data from raw sequences to quantitated clonotypes +MiXCR processes big immunome data from raw sequences to quantitated clonotypes *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2.1.9`` | ``-Java-1.8.0_162`` | ``system`` ``3.0.13`` | ``-Java-1.8`` | ``system`` ``3.0.13`` | ``-Java-11`` | ``system`` -``3.0.3`` | ``-Java-1.8`` | ``system`` ``4.6.0`` | ``-Java-17`` | ``system`` diff --git a/docs/version-specific/supported-software/m/MinCED.md b/docs/version-specific/supported-software/m/MinCED.md deleted file mode 100644 index bd85022bea..0000000000 --- a/docs/version-specific/supported-software/m/MinCED.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MinCED - -Mining CRISPRs in Environmental Datasets - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.4.2`` | ``-Java-11`` | ``GCCcore/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MinPath.md b/docs/version-specific/supported-software/m/MinPath.md index 96b5f31ece..91eb3d1db5 100644 --- a/docs/version-specific/supported-software/m/MinPath.md +++ b/docs/version-specific/supported-software/m/MinPath.md @@ -6,14 +6,11 @@ search: MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achieving a more conservative, yet more faithful, estimation of the biological pathways for a query dataset. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.4`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.4`` | ``-Python-2.7.15`` | ``intel/2018b`` -``1.4`` | ``-Python-2.7.16`` | ``intel/2019b`` -``1.6`` | | ``GCCcore/11.2.0`` +version | toolchain +--------|---------- +``1.6`` | ``GCCcore/11.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/Mini-XML.md b/docs/version-specific/supported-software/m/Mini-XML.md index a4ee3ee972..bb92591bb4 100644 --- a/docs/version-specific/supported-software/m/Mini-XML.md +++ b/docs/version-specific/supported-software/m/Mini-XML.md @@ -10,8 +10,6 @@ Mini-XML is a small XML parsing library that you can use to read XML data files version | toolchain --------|---------- -``2.12`` | ``GCCcore/9.3.0`` -``2.9`` | ``GCCcore/8.2.0`` ``3.2`` | ``GCCcore/10.3.0`` ``3.3.1`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/m/MiniCARD.md b/docs/version-specific/supported-software/m/MiniCARD.md deleted file mode 100644 index 2b5f860f6d..0000000000 --- a/docs/version-specific/supported-software/m/MiniCARD.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MiniCARD - -MiniCARD is a *cardinality solver* based on MiniSAT [www.minisat.se]. MiniCARD handles cardinality constraints natively, using the same efficient data structures and techniques MiniSAT uses for clauses, giving it much better performance on cardinality constraints than CNF encodings of those constraints passed to a typical SAT solver. It can read the standard DIMACS CNF format, the OPB pseudo-boolean format (with linear cardinality constraints only), and CNF+, a format that extends CNF to include cardinality constraints. - -*homepage*: - -version | toolchain ---------|---------- -``1.2`` | ``GCC/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MiniSat.md b/docs/version-specific/supported-software/m/MiniSat.md deleted file mode 100644 index 0d091ea31e..0000000000 --- a/docs/version-specific/supported-software/m/MiniSat.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MiniSat - -MiniSat is a minimalistic, open-source SAT solver, developed to help researchers and developers alike to get started on SAT. - -*homepage*: - -version | toolchain ---------|---------- -``2.2.0`` | ``GCC/9.3.0`` -``20130925`` | ``GCC/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/Miniconda2.md b/docs/version-specific/supported-software/m/Miniconda2.md deleted file mode 100644 index a4b1202c6d..0000000000 --- a/docs/version-specific/supported-software/m/Miniconda2.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Miniconda2 - -Miniconda is a free minimal installer for conda. It is a small, bootstrap version of Anaconda that includes only conda, Python, the packages they depend on, and a small number of other useful packages. - -*homepage*: - -version | toolchain ---------|---------- -``4.3.21`` | ``system`` -``4.6.14`` | ``system`` -``4.7.10`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/Miniconda3.md b/docs/version-specific/supported-software/m/Miniconda3.md index 039e4f5511..862a8f7589 100644 --- a/docs/version-specific/supported-software/m/Miniconda3.md +++ b/docs/version-specific/supported-software/m/Miniconda3.md @@ -14,11 +14,8 @@ version | toolchain ``23.10.0-1`` | ``system`` ``23.5.2-0`` | ``system`` ``23.9.0-0`` | ``system`` +``24.7.1-0`` | ``system`` ``4.12.0`` | ``system`` -``4.4.10`` | ``system`` -``4.5.12`` | ``system`` -``4.6.14`` | ``system`` -``4.7.10`` | ``system`` ``4.8.3`` | ``system`` ``4.9.2`` | ``system`` diff --git a/docs/version-specific/supported-software/m/Miniforge3.md b/docs/version-specific/supported-software/m/Miniforge3.md index 55c234a2d3..7f7b5f237d 100644 --- a/docs/version-specific/supported-software/m/Miniforge3.md +++ b/docs/version-specific/supported-software/m/Miniforge3.md @@ -11,6 +11,7 @@ Miniforge is a free minimal installer for conda and Mamba specific to conda-for version | toolchain --------|---------- ``24.1.2-0`` | ``system`` +``24.11.3-0`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/Minimac4.md b/docs/version-specific/supported-software/m/Minimac4.md index be75b814ad..d272f3df80 100644 --- a/docs/version-specific/supported-software/m/Minimac4.md +++ b/docs/version-specific/supported-software/m/Minimac4.md @@ -10,7 +10,7 @@ Minimac4 is a latest version in the series of genotype imputation software - pr version | toolchain --------|---------- -``1.0.0`` | ``foss/2018a`` +``4.1.6`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MitoFinder.md b/docs/version-specific/supported-software/m/MitoFinder.md new file mode 100644 index 0000000000..e0d1f652d5 --- /dev/null +++ b/docs/version-specific/supported-software/m/MitoFinder.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# MitoFinder + +MitoFinder is a pipeline to assemble mitochondrial genomes and annotate mitochondrial genes from trimmed read sequencing data + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``1.4.2`` | ``-Python-2.7.18`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/m/MitoZ.md b/docs/version-specific/supported-software/m/MitoZ.md deleted file mode 100644 index e198a3909e..0000000000 --- a/docs/version-specific/supported-software/m/MitoZ.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MitoZ - -MitoZ is a Python3-based toolkit which aims to automatically filter pair-end raw data (fastq files), assemble genome, search for mitogenome sequences from the genome assembly result, annotate mitogenome (genbank file as result), and mitogenome visualization. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.3`` | ``-Python-3.6.6`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MixMHC2pred.md b/docs/version-specific/supported-software/m/MixMHC2pred.md index 803e5ed111..cd553116f2 100644 --- a/docs/version-specific/supported-software/m/MixMHC2pred.md +++ b/docs/version-specific/supported-software/m/MixMHC2pred.md @@ -4,7 +4,7 @@ search: --- # MixMHC2pred -MixMHC2pred is a predictor of HLA class II ligands and epitopes. It is described in publication Racle, J., et al. Robust prediction of HLA class II epitopes by deep motif deconvolution of immunopeptidomes +MixMHC2pred is a predictor of HLA class II ligands and epitopes. It is described in publication Racle, J., et al. Robust prediction of HLA class II epitopes by deep motif deconvolution of immunopeptidomes *homepage*: diff --git a/docs/version-specific/supported-software/m/Mmg.md b/docs/version-specific/supported-software/m/Mmg.md index 132037835a..ed93534d20 100644 --- a/docs/version-specific/supported-software/m/Mmg.md +++ b/docs/version-specific/supported-software/m/Mmg.md @@ -4,13 +4,12 @@ search: --- # Mmg -Mmg is an open source software for simplicial remeshing. It provides 3 applications and 4 libraries: the mmg2d application and the libmmg2d library: adaptation and optimization of a two-dimensional triangulation and generation of a triangulation from a set of points or from given boundary edges the mmgs application and the libmmgs library: adaptation and optimization of a surface triangulation and isovalue discretization the mmg3d application and the libmmg3d library: adaptation and optimization of a tetrahedral mesh and implicit domain meshing the libmmg library gathering the libmmg2d, libmmgs and libmmg3d libraries +Mmg is an open source software for simplicial remeshing. It provides 3 applications and 4 libraries: the mmg2d application and the libmmg2d library: adaptation and optimization of a two-dimensional triangulation and generation of a triangulation from a set of points or from given boundary edges the mmgs application and the libmmgs library: adaptation and optimization of a surface triangulation and isovalue discretization the mmg3d application and the libmmg3d library: adaptation and optimization of a tetrahedral mesh and implicit domain meshing the libmmg library gathering the libmmg2d, libmmgs and libmmg3d libraries. *homepage*: version | toolchain --------|---------- -``5.3.9`` | ``foss/2017b`` ``5.6.0`` | ``gompi/2021a`` ``5.6.0`` | ``gompi/2021b`` ``5.7.2`` | ``gompi/2022a`` diff --git a/docs/version-specific/supported-software/m/ModelTest-NG.md b/docs/version-specific/supported-software/m/ModelTest-NG.md index 29057e03ae..3ba8069360 100644 --- a/docs/version-specific/supported-software/m/ModelTest-NG.md +++ b/docs/version-specific/supported-software/m/ModelTest-NG.md @@ -11,6 +11,7 @@ ModelTest-NG is a tool for selecting the best-fit model of evolution for DNA and version | toolchain --------|---------- ``0.1.7`` | ``gompi/2021b`` +``0.2.0-dev_20220721`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/Molcas.md b/docs/version-specific/supported-software/m/Molcas.md deleted file mode 100644 index 4828f6e204..0000000000 --- a/docs/version-specific/supported-software/m/Molcas.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Molcas - -Molcas is an ab initio quantum chemistry software package developed by scientists to be used by scientists. The basic philosophy is is to be able to treat general electronic structures for molecules consisting of atoms from most of the periodic table. As such, the primary focus of the package is on multiconfigurational methods with applications typically connected to the treatment of highly degenerate states. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``8.0-15.06.18`` | ``_CentOS_6.6_x86_64`` | ``system`` -``8.2`` | ``-centos-mkl-par`` | ``system`` -``8.2`` | ``-centos-par`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/Molden.md b/docs/version-specific/supported-software/m/Molden.md index 65c0dffda9..0c347715bf 100644 --- a/docs/version-specific/supported-software/m/Molden.md +++ b/docs/version-specific/supported-software/m/Molden.md @@ -6,18 +6,14 @@ search: Molden is a package for displaying Molecular Density from the Ab Initio packages GAMESS-UK, GAMESS-US and GAUSSIAN and the Semi-Empirical packages Mopac/Ampac -*homepage*: +*homepage*: version | toolchain --------|---------- -``5.6`` | ``foss/2016a`` -``5.7`` | ``intel/2016b`` -``5.8`` | ``foss/2018a`` -``6.1`` | ``GCCcore/8.2.0`` ``6.8`` | ``GCCcore/10.2.0`` -``6.8`` | ``GCCcore/9.3.0`` ``7.1`` | ``GCCcore/11.3.0`` ``7.3`` | ``GCCcore/12.3.0`` +``7.3`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/Molekel.md b/docs/version-specific/supported-software/m/Molekel.md deleted file mode 100644 index c448e89c3c..0000000000 --- a/docs/version-specific/supported-software/m/Molekel.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Molekel - -Molekel is an open-source multi-platform molecular visualization program. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``5.4.0`` | ``-Linux_x86_64`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MoloVol.md b/docs/version-specific/supported-software/m/MoloVol.md new file mode 100644 index 0000000000..f0a0a36704 --- /dev/null +++ b/docs/version-specific/supported-software/m/MoloVol.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# MoloVol + +MoloVol is a free, cross-plattform, scientific software for volume and surface computations of single molecules and crystallographic unit cells. + +*homepage*: + +version | toolchain +--------|---------- +``1.1.1`` | ``GCC/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/m/Molpro.md b/docs/version-specific/supported-software/m/Molpro.md index 788e74e995..8ae7245678 100644 --- a/docs/version-specific/supported-software/m/Molpro.md +++ b/docs/version-specific/supported-software/m/Molpro.md @@ -10,10 +10,6 @@ Molpro is a complete system of ab initio programs for molecular electronic struc version | versionsuffix | toolchain --------|---------------|---------- -``2010.1.23`` | ``.Linux_x86_64`` | ``system`` -``2015.1.0`` | ``.linux_x86_64_intel`` | ``system`` -``2015.1.10`` | ``.linux_x86_64_openmp`` | ``system`` -``2015.1.3`` | ``.linux_x86_64_openmp`` | ``system`` ``2024.1.0`` | ``.linux_x86_64_mpipr`` | ``system`` ``2024.1.0`` | ``.linux_x86_64_sockets`` | ``system`` diff --git a/docs/version-specific/supported-software/m/Mono.md b/docs/version-specific/supported-software/m/Mono.md index 315bd9695e..09526ad1a8 100644 --- a/docs/version-specific/supported-software/m/Mono.md +++ b/docs/version-specific/supported-software/m/Mono.md @@ -6,21 +6,11 @@ search: An open source, cross-platform, implementation of C# and the CLR that is binary compatible with Microsoft.NET. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.10.6`` | ``intel/2016b`` -``4.6.2.7`` | ``intel/2016b`` -``4.6.2.7`` | ``system`` -``4.8.0.495`` | ``intel/2017a`` -``5.10.0.160`` | ``foss/2018a`` -``5.18.1.0`` | ``foss/2018a`` -``5.4.1.6`` | ``foss/2017b`` -``5.4.1.6`` | ``intel/2017b`` ``6.12.0.122`` | ``GCCcore/11.2.0`` -``6.4.0.198`` | ``foss/2018b`` -``6.8.0.105`` | ``GCCcore/8.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/Monocle3.md b/docs/version-specific/supported-software/m/Monocle3.md index eab9ff39cc..7fa83b3403 100644 --- a/docs/version-specific/supported-software/m/Monocle3.md +++ b/docs/version-specific/supported-software/m/Monocle3.md @@ -10,10 +10,10 @@ An analysis toolkit for single-cell RNA-seq. version | versionsuffix | toolchain --------|---------------|---------- -``0.2.0`` | ``-Python-3.7.2-R-3.6.0`` | ``foss/2019a`` ``0.2.3`` | ``-R-4.0.3`` | ``foss/2020b`` ``1.3.1`` | ``-R-4.2.1`` | ``foss/2022a`` ``1.3.1`` | ``-R-4.2.2`` | ``foss/2022b`` +``1.3.1`` | ``-R-4.3.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MoreRONN.md b/docs/version-specific/supported-software/m/MoreRONN.md deleted file mode 100644 index 02dffefd8f..0000000000 --- a/docs/version-specific/supported-software/m/MoreRONN.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MoreRONN - -MoreRONN is the spiritual successor of RONN and is useful for surveying disorder in proteins as well as designing expressible constructs for X-ray crystallography. - -*homepage*: - -version | toolchain ---------|---------- -``4.9`` | ``GCC/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/Mothur.md b/docs/version-specific/supported-software/m/Mothur.md deleted file mode 100644 index 296f2007d3..0000000000 --- a/docs/version-specific/supported-software/m/Mothur.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Mothur - -Mothur is a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.39.5`` | ``-Python-2.7.13`` | ``intel/2017a`` -``1.41.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.43.0`` | ``-Python-3.7.2`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MotionCor2.md b/docs/version-specific/supported-software/m/MotionCor2.md index 361dc103ea..96cb1ac848 100644 --- a/docs/version-specific/supported-software/m/MotionCor2.md +++ b/docs/version-specific/supported-software/m/MotionCor2.md @@ -10,9 +10,6 @@ MotionCor2 correct anisotropic image motion at the single pixel level across the version | toolchain --------|---------- -``1.2.6`` | ``GCCcore/8.2.0`` -``1.3.1`` | ``GCCcore/8.3.0`` -``1.3.2`` | ``GCCcore/8.3.0`` ``1.4.2`` | ``GCCcore/10.2.0`` ``1.4.4`` | ``GCCcore/10.2.0`` ``1.4.4`` | ``GCCcore/10.3.0`` diff --git a/docs/version-specific/supported-software/m/MotionCor3.md b/docs/version-specific/supported-software/m/MotionCor3.md index edc01bd012..372638a774 100644 --- a/docs/version-specific/supported-software/m/MotionCor3.md +++ b/docs/version-specific/supported-software/m/MotionCor3.md @@ -4,7 +4,7 @@ search: --- # MotionCor3 -Anisotropic correction of beam induced motion for cryo-electron microscopy and cryo-electron tomography images. MotionCor3, an improved implementation of MotionCor2 with addition of CTF (Contrast Transfer Function) estimation, is a multi-GPU accelerated software package that enables single-pixel level correction of anisotropic beam induced sample motion for cryo-electron microscopy and cryo-electron tomography images. The iterative, patch-based motion detection combined with spatial and temporal constraints and dose weighting provides robust and accurate correction. By refining the measurement of early motion, MotionCor3 further improves correction on tilted samples. The efficiency achieved by multi-GPU acceleration and parallelization enables correction to keep pace with automated data collection. The recent addition of a very robust GPU-accelerated CTF estimation makes MotionCor3 more versatile in cryoEM and cryoET processing pipeline. +Anisotropic correction of beam induced motion for cryo-electron microscopy and cryo-electron tomography images. MotionCor3, an improved implementation of MotionCor2 with addition of CTF (Contrast Transfer Function) estimation, is a multi-GPU accelerated software package that enables single-pixel level correction of anisotropic beam induced sample motion for cryo-electron microscopy and cryo-electron tomography images. The iterative, patch-based motion detection combined with spatial and temporal constraints and dose weighting provides robust and accurate correction. By refining the measurement of early motion, MotionCor3 further improves correction on tilted samples. The efficiency achieved by multi-GPU acceleration and parallelization enables correction to keep pace with automated data collection. The recent addition of a very robust GPU-accelerated CTF estimation makes MotionCor3 more versatile in cryoEM and cryoET processing pipeline. *homepage*: diff --git a/docs/version-specific/supported-software/m/MoviePy.md b/docs/version-specific/supported-software/m/MoviePy.md index fa0ef4d7d7..e22913309a 100644 --- a/docs/version-specific/supported-software/m/MoviePy.md +++ b/docs/version-specific/supported-software/m/MoviePy.md @@ -8,11 +8,10 @@ MoviePy (full documentation) is a Python library for video editing: cutting, con *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.1`` | ``-Python-3.7.2`` | ``foss/2019a`` -``1.0.3`` | | ``foss/2021a`` -``1.0.3`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``1.0.3`` | ``foss/2021a`` +``1.0.3`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MrBayes.md b/docs/version-specific/supported-software/m/MrBayes.md index 47483784c4..cfd4f3753c 100644 --- a/docs/version-specific/supported-software/m/MrBayes.md +++ b/docs/version-specific/supported-software/m/MrBayes.md @@ -4,20 +4,16 @@ search: --- # MrBayes -MrBayes is a program for the Bayesian estimation of phylogeny. +MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.2.6`` | ``foss/2016a`` -``3.2.6`` | ``foss/2017a`` ``3.2.6`` | ``gompi/2020b`` ``3.2.7`` | ``gompi/2020b`` ``3.2.7`` | ``gompi/2022a`` -``3.2.7`` | ``gompic/2019b`` -``3.2.7a`` | ``foss/2020a`` -``3.2.7a`` | ``iimpi/2019a`` +``3.2.7`` | ``gompi/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MuPeXI.md b/docs/version-specific/supported-software/m/MuPeXI.md deleted file mode 100644 index 3f4a949e51..0000000000 --- a/docs/version-specific/supported-software/m/MuPeXI.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MuPeXI - -MuPeXI: Mutant Peptide eXtractor and Informer. Given a list of somatic mutations (VCF file) as input, MuPeXI returns a table containing all mutated peptides (neo-peptides) of user-defined lengths, along with several pieces of information relevant for identifying which of these neo-peptides are likely to serve as neo-epitopes. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.0`` | ``-Perl-5.28.0-Python-2.7.15`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MuSiC.md b/docs/version-specific/supported-software/m/MuSiC.md deleted file mode 100644 index 7bfeee4ea0..0000000000 --- a/docs/version-specific/supported-software/m/MuSiC.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MuSiC - -Multi-subject Single Cell deconvolution (MuSiC) is a deconvolution method that utilizes cross-subject scRNA-seq to estimate cell type proportions in bulk RNA-seq data. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.6.2`` | ``-R-3.5.1`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MuTect.md b/docs/version-specific/supported-software/m/MuTect.md deleted file mode 100644 index db05e8607a..0000000000 --- a/docs/version-specific/supported-software/m/MuTect.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MuTect - -MuTect is a method developed at the Broad Institute for the reliable and accurate identification of somatic point mutations in next generation sequencing data of cancer genomes. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.4`` | ``-Java-1.7.0_76`` | ``system`` -``1.1.4`` | ``-Java-1.7.0_80`` | ``system`` -``1.1.7`` | ``-Java-1.7.0_80`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MultiNest.md b/docs/version-specific/supported-software/m/MultiNest.md deleted file mode 100644 index 7a58b3875e..0000000000 --- a/docs/version-specific/supported-software/m/MultiNest.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MultiNest - -MultiNest is a Bayesian inference tool which calculates the evidence and explores the parameter space which may contain multiple posterior modes and pronounced (curving) degeneracies in moderately high dimensions. - -*homepage*: - -version | toolchain ---------|---------- -``3.10`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MultiQC.md b/docs/version-specific/supported-software/m/MultiQC.md index da4996f519..085590b8e7 100644 --- a/docs/version-specific/supported-software/m/MultiQC.md +++ b/docs/version-specific/supported-software/m/MultiQC.md @@ -4,36 +4,19 @@ search: --- # MultiQC -Aggregate results from bioinformatics analyses across many samples into a single report. MultiQC searches a given directory for analysis logs and compiles a HTML report. It's a general use tool, perfect for summarising the output from numerous bioinformatics tools. +Aggregate results from bioinformatics analyses across many samples into a single report. MultiQC searches a given directory for analysis logs and compiles a HTML report. It's a general use tool, perfect for summarising the output from numerous bioinformatics tools. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.9`` | ``-Python-2.7.12`` | ``foss/2016b`` -``1.10.1`` | | ``foss/2020b`` -``1.11`` | | ``foss/2021a`` -``1.12`` | | ``foss/2021b`` -``1.14`` | | ``foss/2022a`` -``1.14`` | | ``foss/2022b`` -``1.2`` | ``-Python-2.7.14`` | ``foss/2017b`` -``1.2`` | ``-Python-3.6.3`` | ``foss/2017b`` -``1.2`` | ``-Python-2.7.14`` | ``intel/2017b`` -``1.2`` | ``-Python-3.6.3`` | ``intel/2017b`` -``1.22.3`` | | ``foss/2023b`` -``1.6`` | ``-Python-2.7.14`` | ``foss/2017b`` -``1.6`` | ``-Python-3.6.3`` | ``foss/2017b`` -``1.6`` | ``-Python-2.7.14`` | ``intel/2017b`` -``1.6`` | ``-Python-3.6.3`` | ``intel/2017b`` -``1.7`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.7`` | ``-Python-2.7.15`` | ``intel/2018b`` -``1.7`` | ``-Python-3.6.6`` | ``intel/2018b`` -``1.8`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.8`` | ``-Python-2.7.16`` | ``intel/2019b`` -``1.8`` | ``-Python-3.7.4`` | ``intel/2019b`` -``1.9`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.9`` | ``-Python-3.8.2`` | ``foss/2020a`` -``1.9`` | ``-Python-3.8.2`` | ``intel/2020a`` +version | toolchain +--------|---------- +``1.10.1`` | ``foss/2020b`` +``1.11`` | ``foss/2021a`` +``1.12`` | ``foss/2021b`` +``1.14`` | ``foss/2022a`` +``1.14`` | ``foss/2022b`` +``1.20`` | ``foss/2023a`` +``1.22.3`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/Multiwfn.md b/docs/version-specific/supported-software/m/Multiwfn.md deleted file mode 100644 index 760afcc58f..0000000000 --- a/docs/version-specific/supported-software/m/Multiwfn.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Multiwfn - -A multifunctional wavefunction analyzer - -*homepage*: - -version | toolchain ---------|---------- -``3.4.1`` | ``intel/2017b`` -``3.6`` | ``intel/2019a`` -``3.6`` | ``intel/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/BoltzTraP.md b/docs/version-specific/supported-software/m/Mustache.md similarity index 57% rename from docs/version-specific/supported-software/b/BoltzTraP.md rename to docs/version-specific/supported-software/m/Mustache.md index 8c0411df06..9650efec51 100644 --- a/docs/version-specific/supported-software/b/BoltzTraP.md +++ b/docs/version-specific/supported-software/m/Mustache.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# BoltzTraP +# Mustache -Boltzmann Transport Properties (BoltzTraP) is a program for calculating the semi-classic transport coefficients. +Mustache (Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation) is a tool for multi-scale detection of chromatin loops from Hi-C and Micro-C contact maps in high resolutions (10kbp all the way to 500bp and even more). Mustache uses recent technical advances in scale-space theory in Computer Vision to detect chromatin loops caused by interaction of DNA segments with a variable size. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.2.5`` | ``intel/2016a`` +``1.3.3`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MyCC.md b/docs/version-specific/supported-software/m/MyCC.md deleted file mode 100644 index b2ae516ce6..0000000000 --- a/docs/version-specific/supported-software/m/MyCC.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MyCC - -MyCC is built and delivered as a tailored solution for metagenomics sequencesclassfication. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2017-03-01`` | ``-Python-2.7.16`` | ``intel/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MyMediaLite.md b/docs/version-specific/supported-software/m/MyMediaLite.md deleted file mode 100644 index c29b034845..0000000000 --- a/docs/version-specific/supported-software/m/MyMediaLite.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MyMediaLite - -MyMediaLite is a lightweight, multi-purpose library of recommender system algorithms. - -*homepage*: - -version | toolchain ---------|---------- -``3.10`` | ``intel/2016b`` -``3.11`` | ``intel/2016b`` -``3.12`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MySQL-python.md b/docs/version-specific/supported-software/m/MySQL-python.md deleted file mode 100644 index e51e80b7dc..0000000000 --- a/docs/version-specific/supported-software/m/MySQL-python.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MySQL-python - -MySQL database connector for Python - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.5`` | ``-Python-2.7.11-MariaDB-10.1.14`` | ``intel/2016a`` -``1.2.5`` | ``-Python-2.7.11`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MySQL.md b/docs/version-specific/supported-software/m/MySQL.md deleted file mode 100644 index 024cc0543b..0000000000 --- a/docs/version-specific/supported-software/m/MySQL.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MySQL - -MySQL is (as of March 2014) the world's second most widely used open-source relational database management system (RDBMS). - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``5.6.26`` | ``-clientonly`` | ``GNU/4.9.3-2.25`` -``5.7.21`` | ``-clientonly`` | ``GCCcore/6.4.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/index.md b/docs/version-specific/supported-software/m/index.md index 2ac0de438b..d3750e6013 100644 --- a/docs/version-specific/supported-software/m/index.md +++ b/docs/version-specific/supported-software/m/index.md @@ -13,7 +13,6 @@ search: * [M4](M4.md) * [m4ri](m4ri.md) * [m4rie](m4rie.md) - * [MACH](MACH.md) * [MACS2](MACS2.md) * [MACS3](MACS3.md) * [MACSE](MACSE.md) @@ -21,16 +20,12 @@ search: * [MAFFT](MAFFT.md) * [MAGeCK](MAGeCK.md) * [MAGIC](MAGIC.md) - * [magick](magick.md) * [Magics](Magics.md) * [magma](magma.md) * [MAGMA-gene-analysis](MAGMA-gene-analysis.md) - * [MagresPython](MagresPython.md) * [mahotas](mahotas.md) - * [MAJIQ](MAJIQ.md) * [make](make.md) * [makedepend](makedepend.md) - * [makedepf90](makedepf90.md) * [makefun](makefun.md) * [makeinfo](makeinfo.md) * [MAKER](MAKER.md) @@ -42,18 +37,16 @@ search: * [manta](manta.md) * [mapDamage](mapDamage.md) * [Maple](Maple.md) - * [MapSplice](MapSplice.md) - * [Maq](Maq.md) * [MariaDB](MariaDB.md) * [MariaDB-connector-c](MariaDB-connector-c.md) * [Markdown](Markdown.md) - * [MARS](MARS.md) * [Mash](Mash.md) + * [MashMap](MashMap.md) * [Mashtree](Mashtree.md) * [MaSuRCA](MaSuRCA.md) * [MATES](MATES.md) * [Mathematica](Mathematica.md) - * [MathGL](MathGL.md) + * [MathWorksServiceHost](MathWorksServiceHost.md) * [MATIO](MATIO.md) * [MATLAB](MATLAB.md) * [MATLAB-Engine](MATLAB-Engine.md) @@ -63,51 +56,35 @@ search: * [MATSim](MATSim.md) * [maturin](maturin.md) * [Maude](Maude.md) - * [mauveAligner](mauveAligner.md) * [Maven](Maven.md) - * [mawk](mawk.md) * [MaxBin](MaxBin.md) * [MaxQuant](MaxQuant.md) * [mayavi](mayavi.md) * [maze](maze.md) * [MbedTLS](MbedTLS.md) * [MBROLA](MBROLA.md) - * [mbuffer](mbuffer.md) * [MBX](MBX.md) - * [mc](mc.md) * [MCL](MCL.md) * [mcqd](mcqd.md) * [MCR](MCR.md) * [mctc-lib](mctc-lib.md) * [mcu](mcu.md) * [MDAnalysis](MDAnalysis.md) - * [MDBM](MDBM.md) * [MDI](MDI.md) - * [MDSplus](MDSplus.md) - * [MDSplus-Java](MDSplus-Java.md) - * [MDSplus-Python](MDSplus-Python.md) - * [mdtest](mdtest.md) + * [MDStress](MDStress.md) * [MDTraj](MDTraj.md) * [mdust](mdust.md) * [meboot](meboot.md) * [medaka](medaka.md) - * [medImgProc](medImgProc.md) * [MedPy](MedPy.md) * [Meep](Meep.md) * [MEGA](MEGA.md) - * [MEGACC](MEGACC.md) * [MEGAHIT](MEGAHIT.md) * [Megalodon](Megalodon.md) * [MEGAN](MEGAN.md) - * [Meld](Meld.md) - * [MEM](MEM.md) * [MEME](MEME.md) - * [memkind](memkind.md) - * [memory-profiler](memory-profiler.md) * [MEMOTE](MEMOTE.md) * [memtester](memtester.md) - * [meRanTK](meRanTK.md) - * [MERCKX](MERCKX.md) * [Mercurial](Mercurial.md) * [Mesa](Mesa.md) * [Mesa-demos](Mesa-demos.md) @@ -118,30 +95,24 @@ search: * [Meson](Meson.md) * [meson-python](meson-python.md) * [Mesquite](Mesquite.md) - * [MESS](MESS.md) * [MetaBAT](MetaBAT.md) - * [MetaboAnalystR](MetaboAnalystR.md) * [MetaDecoder](MetaDecoder.md) - * [metaerg](metaerg.md) * [MetaEuk](MetaEuk.md) * [MetaGeneAnnotator](MetaGeneAnnotator.md) - * [Metagenome-Atlas](Metagenome-Atlas.md) * [Metal](Metal.md) * [MetalWalls](MetalWalls.md) * [MetaMorpheus](MetaMorpheus.md) * [MetaPhlAn](MetaPhlAn.md) - * [MetaPhlAn2](MetaPhlAn2.md) * [metaWRAP](metaWRAP.md) - * [Metaxa2](Metaxa2.md) * [meteogrid](meteogrid.md) * [methylartist](methylartist.md) * [MethylDackel](MethylDackel.md) * [methylpy](methylpy.md) * [METIS](METIS.md) + * [MFiX](MFiX.md) * [mfqe](mfqe.md) * [mgen](mgen.md) * [mgltools](mgltools.md) - * [mhcflurry](mhcflurry.md) * [mhcnuggets](mhcnuggets.md) * [MICOM](MICOM.md) * [micro-sam](micro-sam.md) @@ -152,63 +123,49 @@ search: * [Mikado](Mikado.md) * [Miller](Miller.md) * [mimalloc](mimalloc.md) - * [MINC](MINC.md) - * [MinCED](MinCED.md) * [Mini-XML](Mini-XML.md) * [miniasm](miniasm.md) - * [minibar](minibar.md) - * [MiniCARD](MiniCARD.md) - * [Miniconda2](Miniconda2.md) * [Miniconda3](Miniconda3.md) - * [minieigen](minieigen.md) * [Miniforge3](Miniforge3.md) * [Minimac4](Minimac4.md) * [minimap2](minimap2.md) * [Minipolish](Minipolish.md) * [miniprot](miniprot.md) - * [MiniSat](MiniSat.md) * [minizip](minizip.md) * [MINPACK](MINPACK.md) * [MinPath](MinPath.md) * [MIRA](MIRA.md) - * [miRDeep2](miRDeep2.md) * [Mish-Cuda](Mish-Cuda.md) - * [misha](misha.md) * [MITgcmutils](MITgcmutils.md) * [MITObim](MITObim.md) + * [MitoFinder](MitoFinder.md) * [MitoHiFi](MitoHiFi.md) - * [MitoZ](MitoZ.md) * [MiXCR](MiXCR.md) * [MixMHC2pred](MixMHC2pred.md) - * [mkl-dnn](mkl-dnn.md) * [mkl-service](mkl-service.md) - * [mkl_fft](mkl_fft.md) * [ml-collections](ml-collections.md) * [ml_dtypes](ml_dtypes.md) - * [MLC](MLC.md) * [MLflow](MLflow.md) * [mlpack](mlpack.md) - * [MLxtend](MLxtend.md) + * [mlst](mlst.md) * [mm-common](mm-common.md) * [Mmg](Mmg.md) - * [MMSEQ](MMSEQ.md) * [MMseqs2](MMseqs2.md) * [mmtf-cpp](mmtf-cpp.md) * [MNE-Python](MNE-Python.md) * [MOABB](MOABB.md) - * [MOABS](MOABS.md) - * [MOB-suite](MOB-suite.md) * [ModelTest-NG](ModelTest-NG.md) * [MODFLOW](MODFLOW.md) - * [modred](modred.md) + * [modin](modin.md) + * [modkit](modkit.md) * [MOFA2](MOFA2.md) * [MOKIT](MOKIT.md) - * [Molcas](Molcas.md) * [mold](mold.md) * [Molden](Molden.md) * [molecularGSM](molecularGSM.md) - * [Molekel](Molekel.md) + * [MOLGW](MOLGW.md) * [molmod](molmod.md) + * [MoloVol](MoloVol.md) * [Molpro](Molpro.md) * [MONA](MONA.md) * [MONAI](MONAI.md) @@ -216,17 +173,11 @@ search: * [mongolite](mongolite.md) * [Mono](Mono.md) * [Monocle3](Monocle3.md) - * [moonjit](moonjit.md) - * [MOOSE](MOOSE.md) - * [mordecai](mordecai.md) - * [MoreRONN](MoreRONN.md) * [morphosamplers](morphosamplers.md) * [mosdepth](mosdepth.md) - * [Mothur](Mothur.md) * [motif](motif.md) * [MotionCor2](MotionCor2.md) * [MotionCor3](MotionCor3.md) - * [motionSegmentation](motionSegmentation.md) * [MoviePy](MoviePy.md) * [mpath](mpath.md) * [MPB](MPB.md) @@ -235,61 +186,41 @@ search: * [MPFR](MPFR.md) * [mpi4py](mpi4py.md) * [MPICH](MPICH.md) - * [MPICH2](MPICH2.md) * [mpifileutils](mpifileutils.md) - * [mpiP](mpiP.md) - * [MPJ-Express](MPJ-Express.md) + * [mpl-ascii](mpl-ascii.md) * [mpmath](mpmath.md) * [MrBayes](MrBayes.md) * [mrcfile](mrcfile.md) * [MRChem](MRChem.md) * [MRCPP](MRCPP.md) - * [MRIcron](MRIcron.md) * [MRPRESSO](MRPRESSO.md) * [MRtrix](MRtrix.md) * [MSFragger](MSFragger.md) * [msgpack-c](msgpack-c.md) - * [MSM](MSM.md) - * [MSPC](MSPC.md) + * [msisensor-pro](msisensor-pro.md) * [msprime](msprime.md) * [mstore](mstore.md) - * [MTL4](MTL4.md) * [MuJoCo](MuJoCo.md) * [mujoco-py](mujoco-py.md) * [multicharge](multicharge.md) * [multichoose](multichoose.md) * [MultilevelEstimators](MultilevelEstimators.md) - * [MultiNest](MultiNest.md) * [multiprocess](multiprocess.md) * [MultiQC](MultiQC.md) - * [Multiwfn](Multiwfn.md) * [muMerge](muMerge.md) * [MUMmer](MUMmer.md) * [mumott](mumott.md) * [MUMPS](MUMPS.md) * [muParser](muParser.md) * [muparserx](muparserx.md) - * [MuPeXI](MuPeXI.md) * [MUSCLE](MUSCLE.md) * [MUSCLE3](MUSCLE3.md) - * [MuSiC](MuSiC.md) * [MUST](MUST.md) - * [MuTect](MuTect.md) - * [mutil](mutil.md) - * [MVAPICH2](MVAPICH2.md) + * [Mustache](Mustache.md) * [MView](MView.md) - * [mxml](mxml.md) - * [mxmlplus](mxmlplus.md) * [MXNet](MXNet.md) - * [MyCC](MyCC.md) * [mygene](mygene.md) - * [MyMediaLite](MyMediaLite.md) - * [mympingpong](mympingpong.md) * [Myokit](Myokit.md) - * [mypy](mypy.md) - * [MySQL](MySQL.md) - * [MySQL-python](MySQL-python.md) - * [mysqlclient](mysqlclient.md) *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - *m* - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/maeparser.md b/docs/version-specific/supported-software/m/maeparser.md index b81962ab43..a12811dac9 100644 --- a/docs/version-specific/supported-software/m/maeparser.md +++ b/docs/version-specific/supported-software/m/maeparser.md @@ -10,12 +10,8 @@ maeparser is a parser for Schrodinger Maestro files. version | toolchain --------|---------- -``1.2.2`` | ``gompi/2019a`` -``1.2.2`` | ``iimpi/2019a`` -``1.3.0`` | ``gompi/2019b`` ``1.3.0`` | ``gompi/2021a`` ``1.3.0`` | ``gompi/2022a`` -``1.3.0`` | ``iimpi/2020a`` ``1.3.1`` | ``gompi/2023a`` ``1.3.1`` | ``gompi/2024a`` diff --git a/docs/version-specific/supported-software/m/magick.md b/docs/version-specific/supported-software/m/magick.md deleted file mode 100644 index 9a3ef986e8..0000000000 --- a/docs/version-specific/supported-software/m/magick.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# magick - -R bindings to the open-source image processing library ImageMagick - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0`` | ``-R-3.5.1`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/magma.md b/docs/version-specific/supported-software/m/magma.md index f9e894e7ac..901d336415 100644 --- a/docs/version-specific/supported-software/m/magma.md +++ b/docs/version-specific/supported-software/m/magma.md @@ -6,22 +6,11 @@ search: The MAGMA project aims to develop a dense linear algebra library similar to LAPACK but for heterogeneous/hybrid architectures, starting with current Multicore+GPU systems. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2.3.0`` | ``-CUDA-9.1.85`` | ``foss/2018a`` -``2.3.0`` | | ``fosscuda/2017b`` -``2.3.0`` | | ``intelcuda/2017b`` -``2.4.0`` | | ``fosscuda/2018b`` -``2.5.0`` | | ``fosscuda/2018b`` -``2.5.1`` | | ``fosscuda/2019a`` -``2.5.1`` | | ``fosscuda/2019b`` -``2.5.4`` | | ``fosscuda/2019a`` -``2.5.4`` | | ``fosscuda/2019b`` -``2.5.4`` | | ``fosscuda/2020a`` ``2.5.4`` | | ``fosscuda/2020b`` -``2.5.4`` | | ``intelcuda/2019b`` ``2.5.4`` | | ``intelcuda/2020b`` ``2.6.1`` | ``-CUDA-11.3.1`` | ``foss/2021a`` ``2.6.2`` | ``-CUDA-11.4.1`` | ``foss/2021b`` diff --git a/docs/version-specific/supported-software/m/mahotas.md b/docs/version-specific/supported-software/m/mahotas.md index 9417b1bac3..dbf817a6a5 100644 --- a/docs/version-specific/supported-software/m/mahotas.md +++ b/docs/version-specific/supported-software/m/mahotas.md @@ -8,10 +8,9 @@ Mahotas is a computer vision and image processing library for Python *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.4.13`` | | ``foss/2022a`` -``1.4.3`` | ``-Python-2.7.12`` | ``intel/2016b`` +version | toolchain +--------|---------- +``1.4.13`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/make.md b/docs/version-specific/supported-software/m/make.md index a5ab9f328f..6051c9f409 100644 --- a/docs/version-specific/supported-software/m/make.md +++ b/docs/version-specific/supported-software/m/make.md @@ -4,22 +4,17 @@ search: --- # make -make-3.82: GNU version of make utility +GNU version of make utility -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.82`` | ``GCC/4.8.2`` -``4.1`` | ``GCC/4.9.2`` -``4.2.1`` | ``GCC/7.3.0-2.30`` -``4.2.1`` | ``GCCcore/8.3.0`` ``4.3`` | ``GCCcore/10.2.0`` ``4.3`` | ``GCCcore/10.3.0`` ``4.3`` | ``GCCcore/11.2.0`` ``4.3`` | ``GCCcore/11.3.0`` ``4.3`` | ``GCCcore/12.2.0`` -``4.3`` | ``GCCcore/9.3.0`` ``4.4.1`` | ``GCCcore/12.2.0`` ``4.4.1`` | ``GCCcore/12.3.0`` ``4.4.1`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/m/makedepend.md b/docs/version-specific/supported-software/m/makedepend.md index 44735126b4..e7d0bfed6c 100644 --- a/docs/version-specific/supported-software/m/makedepend.md +++ b/docs/version-specific/supported-software/m/makedepend.md @@ -6,23 +6,16 @@ search: The makedepend package contains a C-preprocessor like utility to determine build-time dependencies. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.0.5`` | ``GCCcore/6.3.0`` -``1.0.5`` | ``GCCcore/6.4.0`` -``1.0.5`` | ``foss/2016a`` -``1.0.5`` | ``gimkl/2.11.5`` -``1.0.5`` | ``intel/2016a`` ``1.0.6`` | ``GCCcore/10.2.0`` ``1.0.6`` | ``GCCcore/10.3.0`` -``1.0.6`` | ``GCCcore/7.3.0`` -``1.0.6`` | ``GCCcore/8.3.0`` -``1.0.6`` | ``GCCcore/9.3.0`` ``1.0.7`` | ``GCCcore/11.3.0`` ``1.0.7`` | ``GCCcore/12.3.0`` ``1.0.9`` | ``GCCcore/13.2.0`` +``1.0.9`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/makedepf90.md b/docs/version-specific/supported-software/m/makedepf90.md deleted file mode 100644 index d203ca5891..0000000000 --- a/docs/version-specific/supported-software/m/makedepf90.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# makedepf90 - -Makedepf90 is a program for automatic creation of Makefile-style dependency lists for Fortran source code. - -*homepage*: - -version | toolchain ---------|---------- -``2.8.8`` | ``foss/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/makefun.md b/docs/version-specific/supported-software/m/makefun.md index 72510d9017..2cfccfe0a7 100644 --- a/docs/version-specific/supported-software/m/makefun.md +++ b/docs/version-specific/supported-software/m/makefun.md @@ -4,7 +4,7 @@ search: --- # makefun -Small library to dynamically create python functions. makefun helps you create functions dynamically, with the signature of your choice. It was largely inspired by decorator and functools, and created mainly to cover some of their limitations. +Small library to dynamically create python functions. makefun helps you create functions dynamically, with the signature of your choice. It was largely inspired by decorator and functools, and created mainly to cover some of their limitations. *homepage*: diff --git a/docs/version-specific/supported-software/m/makeinfo.md b/docs/version-specific/supported-software/m/makeinfo.md index da5b4cc053..15dd892931 100644 --- a/docs/version-specific/supported-software/m/makeinfo.md +++ b/docs/version-specific/supported-software/m/makeinfo.md @@ -14,10 +14,6 @@ version | versionsuffix | toolchain ``6.7`` | | ``GCCcore/10.2.0`` ``6.7`` | ``-minimal`` | ``GCCcore/10.3.0`` ``6.7`` | | ``GCCcore/10.3.0`` -``6.7`` | ``-minimal`` | ``GCCcore/8.3.0`` -``6.7`` | | ``GCCcore/8.3.0`` -``6.7`` | ``-minimal`` | ``GCCcore/9.3.0`` -``6.7`` | | ``GCCcore/9.3.0`` ``6.8`` | | ``GCCcore/11.2.0`` ``6.8`` | | ``GCCcore/11.3.0`` ``7.0.3`` | | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/m/mandrake.md b/docs/version-specific/supported-software/m/mandrake.md index 74a653b497..745ee0c1e0 100644 --- a/docs/version-specific/supported-software/m/mandrake.md +++ b/docs/version-specific/supported-software/m/mandrake.md @@ -4,7 +4,7 @@ search: --- # mandrake -Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding. +Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding. *homepage*: diff --git a/docs/version-specific/supported-software/m/manta.md b/docs/version-specific/supported-software/m/manta.md index 54dd198255..b229a93696 100644 --- a/docs/version-specific/supported-software/m/manta.md +++ b/docs/version-specific/supported-software/m/manta.md @@ -4,16 +4,13 @@ search: --- # manta -Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads. It is optimized for analysis of germline variation in small sets of individuals and somatic variation in tumor/normal sample pairs. Manta discovers, assembles and scores large-scale SVs, medium-sized indels and large insertions within a single efficient workflow. +Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads. It is optimized for analysis of germline variation in small sets of individuals and somatic variation in tumor/normal sample pairs. Manta discovers, assembles and scores large-scale SVs, medium-sized indels and large insertions within a single efficient workflow. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.1.1`` | | ``system`` ``1.6.0`` | ``-Python-2.7.18`` | ``GCC/10.2.0`` -``1.6.0`` | ``-Python-2.7.16`` | ``gompi/2019b`` -``1.6.0`` | ``-Python-2.7.18`` | ``gompi/2020a`` ``1.6.0`` | | ``system`` diff --git a/docs/version-specific/supported-software/m/matlab-proxy.md b/docs/version-specific/supported-software/m/matlab-proxy.md index f67b3e8d4f..cb31fca08d 100644 --- a/docs/version-specific/supported-software/m/matlab-proxy.md +++ b/docs/version-specific/supported-software/m/matlab-proxy.md @@ -11,6 +11,7 @@ A Python package which enables you to launch MATLAB and access it from a web bro version | toolchain --------|---------- ``0.18.1`` | ``GCCcore/12.3.0`` +``0.23.4`` | ``GCCcore/13.2.0`` ``0.5.4`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/m/matplotlib.md b/docs/version-specific/supported-software/m/matplotlib.md index 7a268bd862..96847acb47 100644 --- a/docs/version-specific/supported-software/m/matplotlib.md +++ b/docs/version-specific/supported-software/m/matplotlib.md @@ -10,84 +10,9 @@ matplotlib is a python 2D plotting library which produces publication quality fi version | versionsuffix | toolchain --------|---------------|---------- -``1.4.3`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.5.1`` | ``-Python-2.7.11-freetype-2.6.3`` | ``foss/2016a`` -``1.5.1`` | ``-Python-2.7.11`` | ``foss/2016a`` -``1.5.1`` | ``-Python-3.5.1`` | ``foss/2016a`` -``1.5.1`` | ``-Python-2.7.11-freetype-2.6.3`` | ``intel/2016a`` -``1.5.1`` | ``-Python-2.7.11`` | ``intel/2016a`` -``1.5.1`` | ``-Python-3.5.1`` | ``intel/2016a`` -``1.5.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.5.1`` | ``-Python-3.5.2`` | ``intel/2016b`` -``1.5.2`` | ``-Python-2.7.12`` | ``foss/2016b`` -``1.5.2`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.5.2`` | ``-Python-3.5.2`` | ``intel/2016b`` -``1.5.3`` | ``-Python-2.7.12`` | ``foss/2016b`` -``1.5.3`` | ``-Python-3.5.2`` | ``foss/2016b`` -``1.5.3`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.5.3`` | ``-Python-3.5.2`` | ``intel/2016b`` -``2.0.0`` | ``-Python-2.7.12`` | ``foss/2016b`` -``2.0.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``2.0.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``2.0.1`` | ``-Python-3.6.1`` | ``intel/2017a`` -``2.0.2`` | ``-Python-2.7.13`` | ``foss/2017a`` -``2.0.2`` | ``-Python-3.6.1`` | ``foss/2017a`` -``2.0.2`` | ``-Python-2.7.13-Qt-4.8.7`` | ``intel/2017a`` -``2.0.2`` | ``-Python-2.7.13-libpng-1.6.29`` | ``intel/2017a`` -``2.0.2`` | ``-Python-2.7.13`` | ``intel/2017a`` -``2.0.2`` | ``-Python-3.6.1-libpng-1.6.29`` | ``intel/2017a`` -``2.1.0`` | ``-Python-2.7.14`` | ``foss/2017b`` -``2.1.0`` | ``-Python-3.6.2`` | ``foss/2017b`` -``2.1.0`` | ``-Python-3.6.3`` | ``foss/2017b`` -``2.1.0`` | ``-Python-2.7.14`` | ``fosscuda/2017b`` -``2.1.0`` | ``-Python-3.6.3`` | ``fosscuda/2017b`` -``2.1.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.1.0`` | ``-Python-3.6.3`` | ``intel/2017b`` -``2.1.0`` | ``-Python-2.7.14`` | ``intelcuda/2017b`` -``2.1.0`` | ``-Python-3.6.3`` | ``intelcuda/2017b`` -``2.1.1`` | ``-Python-3.6.3`` | ``foss/2017b`` -``2.1.1`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.1.1`` | ``-Python-3.6.3`` | ``intel/2017b`` -``2.1.2`` | ``-Python-2.7.14`` | ``foss/2018a`` -``2.1.2`` | ``-Python-3.6.4`` | ``foss/2018a`` -``2.1.2`` | ``-Python-2.7.14`` | ``intel/2018a`` -``2.1.2`` | ``-Python-3.6.4`` | ``intel/2018a`` -``2.1.2`` | ``-Python-3.6.4`` | ``iomkl/2018.02`` -``2.1.2`` | ``-Python-3.6.4`` | ``iomkl/2018a`` -``2.2.3`` | ``-Python-2.7.15`` | ``foss/2018b`` -``2.2.3`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` -``2.2.3`` | ``-Python-2.7.15`` | ``intel/2018b`` -``2.2.3`` | ``-Python-3.6.6`` | ``intel/2018b`` -``2.2.4`` | ``-Python-2.7.15`` | ``foss/2019a`` -``2.2.4`` | ``-Python-2.7.16`` | ``foss/2019b`` -``2.2.4`` | ``-Python-2.7.15`` | ``fosscuda/2019a`` -``2.2.4`` | ``-Python-2.7.16`` | ``fosscuda/2019b`` -``2.2.4`` | ``-Python-2.7.15`` | ``intel/2019a`` -``2.2.4`` | ``-Python-2.7.16`` | ``intel/2019b`` -``2.2.4`` | ``-Python-2.7.15`` | ``intelcuda/2019a`` -``2.2.5`` | ``-Python-2.7.16`` | ``foss/2019b`` -``2.2.5`` | ``-Python-2.7.18`` | ``foss/2020a`` ``2.2.5`` | ``-Python-2.7.18`` | ``foss/2020b`` ``2.2.5`` | ``-Python-2.7.18`` | ``foss/2021b`` -``2.2.5`` | ``-Python-2.7.18`` | ``fosscuda/2020a`` -``2.2.5`` | ``-Python-2.7.18`` | ``intel/2020a`` -``3.0.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``3.0.0`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` -``3.0.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``3.0.0`` | ``-Python-3.6.6`` | ``iomkl/2018b`` -``3.0.2`` | ``-Python-3.6.6`` | ``foss/2018b`` -``3.0.3`` | ``-Python-3.7.2`` | ``foss/2019a`` -``3.0.3`` | ``-Python-3.7.2`` | ``fosscuda/2019a`` -``3.0.3`` | ``-Python-3.7.2`` | ``intel/2019a`` -``3.0.3`` | ``-Python-3.7.2`` | ``intelcuda/2019a`` -``3.1.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``3.1.1`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``3.1.1`` | ``-Python-3.7.4`` | ``intel/2019b`` -``3.1.1`` | ``-Python-3.7.4`` | ``intelcuda/2019b`` -``3.2.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``3.2.1`` | ``-Python-3.8.2`` | ``fosscuda/2020a`` -``3.2.1`` | ``-Python-3.8.2`` | ``intel/2020a`` -``3.2.1`` | ``-Python-3.8.2`` | ``intelcuda/2020a`` +``2.2.5`` | ``-Python-2.7.18`` | ``foss/2023a`` ``3.3.3`` | | ``foss/2020b`` ``3.3.3`` | | ``fosscuda/2020b`` ``3.3.3`` | | ``intel/2020b`` diff --git a/docs/version-specific/supported-software/m/mauveAligner.md b/docs/version-specific/supported-software/m/mauveAligner.md deleted file mode 100644 index 55b1ba51f3..0000000000 --- a/docs/version-specific/supported-software/m/mauveAligner.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# mauveAligner - -Mauve is a system for constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignments provide a basis for research into comparative genomics and the study of genome-wide evolutionary dynamics. This version was built without Graphical User Interface. - -*homepage*: - -version | toolchain ---------|---------- -``4736`` | ``gompi/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/mawk.md b/docs/version-specific/supported-software/m/mawk.md deleted file mode 100644 index 6454d9c718..0000000000 --- a/docs/version-specific/supported-software/m/mawk.md +++ /dev/null @@ -1,23 +0,0 @@ ---- -search: - boost: 0.5 ---- -# mawk - -mawk is an interpreter for the AWK Programming Language. - -*homepage*: - -version | toolchain ---------|---------- -``1.3.4-20141206`` | ``GCC/4.9.2`` -``1.3.4-20171017`` | ``foss/2018a`` -``1.3.4-20171017`` | ``foss/2018b`` -``1.3.4-20171017`` | ``foss/2019a`` -``1.3.4-20171017`` | ``intel/2018a`` -``1.3.4-20171017`` | ``intel/2018b`` -``1.3.4-20171017`` | ``intel/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/mayavi.md b/docs/version-specific/supported-software/m/mayavi.md index 4bd6f17c62..c2b7bb1bc2 100644 --- a/docs/version-specific/supported-software/m/mayavi.md +++ b/docs/version-specific/supported-software/m/mayavi.md @@ -8,13 +8,9 @@ The Mayavi scientific data 3-dimensional visualizer *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.4.4`` | ``-Python-2.7.11`` | ``intel/2016a`` -``4.6.2`` | ``-Python-3.6.6`` | ``foss/2018b`` -``4.7.1`` | ``-Python-2.7.15`` | ``foss/2019a`` -``4.7.1`` | ``-Python-3.7.2`` | ``foss/2019a`` -``4.7.4`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``4.7.4`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/mbuffer.md b/docs/version-specific/supported-software/m/mbuffer.md deleted file mode 100644 index 111a5a7b78..0000000000 --- a/docs/version-specific/supported-software/m/mbuffer.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# mbuffer - -mbuffer is a tool for buffering data streams with a large set of unique features. - -*homepage*: - -version | toolchain ---------|---------- -``20191016`` | ``GCCcore/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/mc.md b/docs/version-specific/supported-software/m/mc.md deleted file mode 100644 index 9dd373b34c..0000000000 --- a/docs/version-specific/supported-software/m/mc.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# mc - -mc-4.6.1: User-friendly file manager and visual shell - -*homepage*: - -version | toolchain ---------|---------- -``4.8.13`` | ``GCC/4.9.2`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/mctc-lib.md b/docs/version-specific/supported-software/m/mctc-lib.md index 86ffd24412..9023a48bf7 100644 --- a/docs/version-specific/supported-software/m/mctc-lib.md +++ b/docs/version-specific/supported-software/m/mctc-lib.md @@ -13,6 +13,7 @@ version | toolchain ``0.3.1`` | ``GCC/11.3.0`` ``0.3.1`` | ``GCC/12.2.0`` ``0.3.1`` | ``GCC/12.3.0`` +``0.3.1`` | ``GCC/13.2.0`` ``0.3.1`` | ``intel-compilers/2022.1.0`` ``0.3.1`` | ``intel-compilers/2022.2.1`` diff --git a/docs/version-specific/supported-software/m/mdtest.md b/docs/version-specific/supported-software/m/mdtest.md deleted file mode 100644 index 38b327b7c1..0000000000 --- a/docs/version-specific/supported-software/m/mdtest.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# mdtest - -mdtest is an MPI-coordinated metadata benchmark test that performs open/stat/close operations on files and directories and then reports the performance. - -*homepage*: - -version | toolchain ---------|---------- -``1.9.3`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/meRanTK.md b/docs/version-specific/supported-software/m/meRanTK.md deleted file mode 100644 index 8f654e053f..0000000000 --- a/docs/version-specific/supported-software/m/meRanTK.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# meRanTK - -meRanTK is a versatile high performance toolkit for complete analysis of methylated RNA data. - -*homepage*: - -version | toolchain ---------|---------- -``1.1.1b`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/medImgProc.md b/docs/version-specific/supported-software/m/medImgProc.md deleted file mode 100644 index ba00e804f3..0000000000 --- a/docs/version-specific/supported-software/m/medImgProc.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# medImgProc - -Motion correction, explicit spatio-temporal regularization of motion tracking, random speckles enhancement, and segmentation. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.5.7`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/medaka.md b/docs/version-specific/supported-software/m/medaka.md index 77c7729dea..cee22d5d52 100644 --- a/docs/version-specific/supported-software/m/medaka.md +++ b/docs/version-specific/supported-software/m/medaka.md @@ -10,19 +10,12 @@ medaka is a tool to create a consensus sequence from nanopore sequencing data. version | versionsuffix | toolchain --------|---------------|---------- -``0.11.4`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.12.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.4.3`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.1.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.1.3`` | ``-Python-3.7.4`` | ``foss/2019b`` ``1.11.3`` | | ``foss/2022a`` ``1.11.3`` | | ``foss/2023a`` ``1.12.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``1.12.0`` | | ``foss/2023a`` ``1.12.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``1.12.1`` | | ``foss/2023a`` -``1.2.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.4.3`` | ``-Python-3.7.4`` | ``foss/2019b`` ``1.4.3`` | | ``foss/2020b`` ``1.5.0`` | | ``foss/2021a`` ``1.6.0`` | | ``foss/2021b`` diff --git a/docs/version-specific/supported-software/m/memkind.md b/docs/version-specific/supported-software/m/memkind.md deleted file mode 100644 index 8b0c0d5761..0000000000 --- a/docs/version-specific/supported-software/m/memkind.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# memkind - -User Extensible Heap Manager built on top of jemalloc which enables control of memory characteristics and a partitioning of the heap between kinds of memory. - -*homepage*: - -version | toolchain ---------|---------- -``1.5.0`` | ``GCCcore/5.4.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/memory-profiler.md b/docs/version-specific/supported-software/m/memory-profiler.md deleted file mode 100644 index e7824bb829..0000000000 --- a/docs/version-specific/supported-software/m/memory-profiler.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# memory-profiler - -memory-profiler is a Python module for monitoring memory consumption of a process as well as line-by-line analysis of memory consumption for python programs. - -*homepage*: - -version | toolchain ---------|---------- -``0.55.0`` | ``foss/2019a`` -``0.55.0`` | ``intel/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/meshalyzer.md b/docs/version-specific/supported-software/m/meshalyzer.md index 6e846f6706..aec57ed4d0 100644 --- a/docs/version-specific/supported-software/m/meshalyzer.md +++ b/docs/version-specific/supported-software/m/meshalyzer.md @@ -8,11 +8,9 @@ Graphical program for display time dependent data on 3D finite elment meshes *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``2.2`` | | ``foss/2020b`` -``20200308`` | ``-Python-3.8.2`` | ``foss/2020a`` +version | toolchain +--------|---------- +``2.2`` | ``foss/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/meshio.md b/docs/version-specific/supported-software/m/meshio.md index 27acaf16a5..b5b78f7f03 100644 --- a/docs/version-specific/supported-software/m/meshio.md +++ b/docs/version-specific/supported-software/m/meshio.md @@ -8,13 +8,10 @@ meshio is a tool for reading/writing various mesh formats representing unstructu *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.7.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``2.0.2`` | ``-Python-2.7.14`` | ``intel/2018a`` -``2.0.2`` | ``-Python-3.6.4`` | ``intel/2018a`` -``5.3.4`` | | ``foss/2022b`` -``5.3.5`` | | ``foss/2023b`` +version | toolchain +--------|---------- +``5.3.4`` | ``foss/2022b`` +``5.3.5`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/meshtool.md b/docs/version-specific/supported-software/m/meshtool.md index d613273120..5c70cf54f0 100644 --- a/docs/version-specific/supported-software/m/meshtool.md +++ b/docs/version-specific/supported-software/m/meshtool.md @@ -4,14 +4,13 @@ search: --- # meshtool -Meshtool is a comand-line tool written in C++. It is designed to apply various manipulations to volumetric meshes. +Meshtool is a command-line tool written in C++. It is designed to apply various manipulations to volumetric meshes. *homepage*: version | toolchain --------|---------- ``16`` | ``GCC/10.2.0`` -``16`` | ``GCC/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/metaWRAP.md b/docs/version-specific/supported-software/m/metaWRAP.md index 29c2c7beb8..b93dc2035e 100644 --- a/docs/version-specific/supported-software/m/metaWRAP.md +++ b/docs/version-specific/supported-software/m/metaWRAP.md @@ -4,14 +4,12 @@ search: --- # metaWRAP -MetaWRAP aims to be an easy-to-use metagenomic wrapper suite that accomplishes the core tasks of metagenomic analysis from start to finish: read quality control, assembly, visualization, taxonomic profiling, extracting draft genomes (binning), and functional annotation. +MetaWRAP aims to be an easy-to-use metagenomic wrapper suite that accomplishes the core tasks of metagenomic analysis from start to finish: read quality control, assembly, visualization, taxonomic profiling, extracting draft genomes (binning), and functional annotation. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.2`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.2.2`` | ``-Python-2.7.15`` | ``foss/2019a`` ``1.3`` | ``-Python-2.7.18`` | ``foss/2020b`` diff --git a/docs/version-specific/supported-software/m/metaerg.md b/docs/version-specific/supported-software/m/metaerg.md deleted file mode 100644 index e68bac2bab..0000000000 --- a/docs/version-specific/supported-software/m/metaerg.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# metaerg - -MetaErg is a stand-alone and fully automated metagenomic and metaproteomic data annotation pipeline. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.3`` | ``-Python-2.7.16`` | ``intel/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/methylpy.md b/docs/version-specific/supported-software/m/methylpy.md index ea2a3e5321..28626c6669 100644 --- a/docs/version-specific/supported-software/m/methylpy.md +++ b/docs/version-specific/supported-software/m/methylpy.md @@ -8,10 +8,9 @@ Bisulfite sequencing data processing and differential methylation analysis. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.9`` | ``-Python-2.7.13`` | ``foss/2017a`` -``1.2.9`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``1.2.9`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/mgltools.md b/docs/version-specific/supported-software/m/mgltools.md index d419e5e242..b92ad88bfa 100644 --- a/docs/version-specific/supported-software/m/mgltools.md +++ b/docs/version-specific/supported-software/m/mgltools.md @@ -4,7 +4,7 @@ search: --- # mgltools -The MGLTools software suite can be used for visualization and analysis of molecular structures and comprises the Python Molecular Viewer (PMV, a general purpose molecular viewer), AutoDockTools (ADT, a set of PMV commands specifically developed to support AutoDock users) and Vision (a visual programming environment). +The MGLTools software suite can be used for visualization and analysis of molecular structures and comprises the Python Molecular Viewer (PMV, a general purpose molecular viewer), AutoDockTools (ADT, a set of PMV commands specifically developed to support AutoDock users) and Vision (a visual programming environment). *homepage*: diff --git a/docs/version-specific/supported-software/m/mhcflurry.md b/docs/version-specific/supported-software/m/mhcflurry.md deleted file mode 100644 index 4424c641a7..0000000000 --- a/docs/version-specific/supported-software/m/mhcflurry.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# mhcflurry - -MHCflurry implements class I peptide/MHC binding affinity prediction. By default it supports 112 MHC alleles using ensembles of allele-specific models. Pan-allele predictors supporting virtually any MHC allele of known sequence are available for testing (see below). MHCflurry runs on Python 2.7 and 3.4+ using the keras neural network library. It exposes command-line and Python library interfaces. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.4`` | ``-Python-3.7.2`` | ``foss/2019a`` -``1.2.4`` | ``-Python-3.7.2`` | ``fosscuda/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/mhcnuggets.md b/docs/version-specific/supported-software/m/mhcnuggets.md index 4e555a90a6..fb43a8bc1c 100644 --- a/docs/version-specific/supported-software/m/mhcnuggets.md +++ b/docs/version-specific/supported-software/m/mhcnuggets.md @@ -8,12 +8,10 @@ MHCnuggets: Neoantigen peptide MHC binding prediction for class I and II. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.3`` | ``-Python-3.7.2`` | ``foss/2019a`` -``2.3`` | | ``foss/2020b`` -``2.3`` | ``-Python-3.7.2`` | ``fosscuda/2019a`` -``2.3`` | | ``fosscuda/2020b`` +version | toolchain +--------|---------- +``2.3`` | ``foss/2020b`` +``2.3`` | ``fosscuda/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/miRDeep2.md b/docs/version-specific/supported-software/m/miRDeep2.md deleted file mode 100644 index ef06dbde28..0000000000 --- a/docs/version-specific/supported-software/m/miRDeep2.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# miRDeep2 - -miRDeep2 is a completely overhauled tool which discovers microRNA genes by analyzing sequenced RNAs - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``2.0.0.8`` | | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/minibar.md b/docs/version-specific/supported-software/m/minibar.md deleted file mode 100644 index 4ba07246e6..0000000000 --- a/docs/version-specific/supported-software/m/minibar.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# minibar - -Dual barcode and primer demultiplexing for MinION sequenced reads - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20200326`` | ``-Python-3.7.4`` | ``iccifort/2019.5.281`` -``20200326`` | ``-Python-3.8.2`` | ``iccifort/2020.1.217`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/minieigen.md b/docs/version-specific/supported-software/m/minieigen.md deleted file mode 100644 index 31749fe6e0..0000000000 --- a/docs/version-specific/supported-software/m/minieigen.md +++ /dev/null @@ -1,22 +0,0 @@ ---- -search: - boost: 0.5 ---- -# minieigen - -A small wrapper for core parts of EIgen, c++ library for linear algebra. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.5.3`` | ``-Python-2.7.11`` | ``foss/2016a`` -``0.5.3`` | ``-Python-2.7.12`` | ``foss/2016b`` -``0.5.3`` | ``-Python-2.7.11`` | ``intel/2016a`` -``0.5.3`` | ``-Python-2.7.12-Boost-1.63.0`` | ``intel/2016b`` -``0.5.3`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.5.4`` | ``-Python-2.7.14`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/minimap2.md b/docs/version-specific/supported-software/m/minimap2.md index d2aca80c6e..b2848b4b76 100644 --- a/docs/version-specific/supported-software/m/minimap2.md +++ b/docs/version-specific/supported-software/m/minimap2.md @@ -4,20 +4,12 @@ search: --- # minimap2 -Minimap2 is a fast sequence mapping and alignment program that can find overlaps between long noisy reads, or map long reads or their assemblies to a reference genome optionally with detailed alignment (i.e. CIGAR). At present, it works efficiently with query sequences from a few kilobases to ~100 megabases in length at an error rate ~15%. Minimap2 outputs in the PAF or the SAM format. On limited test data sets, minimap2 is over 20 times faster than most other long-read aligners. It will replace BWA-MEM for long reads and contig alignment. +Minimap2 is a fast sequence mapping and alignment program that can find overlaps between long noisy reads, or map long reads or their assemblies to a reference genome optionally with detailed alignment (i.e. CIGAR). At present, it works efficiently with query sequences from a few kilobases to ~100 megabases in length at an error rate ~15%. Minimap2 outputs in the PAF or the SAM format. On limited test data sets, minimap2 is over 20 times faster than most other long-read aligners. It will replace BWA-MEM for long reads and contig alignment. *homepage*: version | toolchain --------|---------- -``2.0rc1`` | ``foss/2016b`` -``2.10`` | ``foss/2018a`` -``2.11`` | ``intel/2018a`` -``2.12`` | ``foss/2018a`` -``2.13`` | ``foss/2018b`` -``2.17`` | ``GCC/8.2.0-2.31.1`` -``2.17`` | ``GCC/8.3.0`` -``2.17`` | ``GCCcore/9.3.0`` ``2.18`` | ``GCCcore/10.2.0`` ``2.20`` | ``GCCcore/10.2.0`` ``2.20`` | ``GCCcore/10.3.0`` @@ -26,6 +18,7 @@ version | toolchain ``2.24`` | ``GCCcore/11.3.0`` ``2.26`` | ``GCCcore/12.2.0`` ``2.26`` | ``GCCcore/12.3.0`` +``2.28`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/minizip.md b/docs/version-specific/supported-software/m/minizip.md index 09bf1ef7f5..02dd1bff57 100644 --- a/docs/version-specific/supported-software/m/minizip.md +++ b/docs/version-specific/supported-software/m/minizip.md @@ -11,6 +11,7 @@ Mini zip and unzip based on zlib version | toolchain --------|---------- ``1.1`` | ``GCCcore/11.2.0`` +``1.1`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/misha.md b/docs/version-specific/supported-software/m/misha.md deleted file mode 100644 index 2ec440f073..0000000000 --- a/docs/version-specific/supported-software/m/misha.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# misha - -The misha package is intended to help users to efficiently analyze genomic data achieved from various experiments. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``4.0.10`` | ``-R-4.0.0`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/mkl-dnn.md b/docs/version-specific/supported-software/m/mkl-dnn.md deleted file mode 100644 index dcb7bd5484..0000000000 --- a/docs/version-specific/supported-software/m/mkl-dnn.md +++ /dev/null @@ -1,21 +0,0 @@ ---- -search: - boost: 0.5 ---- -# mkl-dnn - -Intel(R) Math Kernel Library for Deep Neural Networks (Intel(R) MKL-DNN) - -*homepage*: - -version | toolchain ---------|---------- -``0.11`` | ``intel/2017b`` -``0.13`` | ``intel/2018a`` -``0.16`` | ``foss/2018b`` -``0.16`` | ``intel/2018b`` -``0.17.2`` | ``foss/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/mkl-service.md b/docs/version-specific/supported-software/m/mkl-service.md index a5642a8dcc..6186a1cf13 100644 --- a/docs/version-specific/supported-software/m/mkl-service.md +++ b/docs/version-specific/supported-software/m/mkl-service.md @@ -8,12 +8,10 @@ Python hooks for Intel(R) Math Kernel Library runtime control settings. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0.2`` | | ``intel/2019a`` -``2.3.0`` | ``-Python-3.7.4`` | ``intel/2019b`` -``2.3.0`` | | ``intel/2020b`` -``2.3.0`` | | ``intel/2021b`` +version | toolchain +--------|---------- +``2.3.0`` | ``intel/2020b`` +``2.3.0`` | ``intel/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/ml_dtypes.md b/docs/version-specific/supported-software/m/ml_dtypes.md index a3cf9599ab..42ad6d05e1 100644 --- a/docs/version-specific/supported-software/m/ml_dtypes.md +++ b/docs/version-specific/supported-software/m/ml_dtypes.md @@ -11,6 +11,7 @@ ml_dtypes is a stand-alone implementation of several NumPy dtype extensions used version | toolchain --------|---------- ``0.3.2`` | ``gfbf/2023a`` +``0.5.0`` | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/cscope.md b/docs/version-specific/supported-software/m/mlst.md similarity index 83% rename from docs/version-specific/supported-software/c/cscope.md rename to docs/version-specific/supported-software/m/mlst.md index 49653f011e..a226e0014a 100644 --- a/docs/version-specific/supported-software/c/cscope.md +++ b/docs/version-specific/supported-software/m/mlst.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# cscope +# mlst -Cscope is a developer's tool for browsing source code. +Scan contig files against PubMLST typing schemes -*homepage*: +*homepage*: version | toolchain --------|---------- -``15.9`` | ``system`` +``2.23.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/mmtf-cpp.md b/docs/version-specific/supported-software/m/mmtf-cpp.md index 2d9c6e8877..c42cd56033 100644 --- a/docs/version-specific/supported-software/m/mmtf-cpp.md +++ b/docs/version-specific/supported-software/m/mmtf-cpp.md @@ -4,7 +4,7 @@ search: --- # mmtf-cpp -The Macromolecular Transmission Format (MMTF) is a new compact binary format to transmit and store biomolecular structures for fast 3D visualization and analysis. +The Macromolecular Transmission Format (MMTF) is a new compact binary format to transmit and store biomolecular structures for fast 3D visualization and analysis. *homepage*: diff --git a/docs/version-specific/supported-software/m/modin.md b/docs/version-specific/supported-software/m/modin.md new file mode 100644 index 0000000000..d7558ed88a --- /dev/null +++ b/docs/version-specific/supported-software/m/modin.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# modin + +Modin uses Ray, Dask or Unidist to provide an effortless way to speed up your pandas notebooks, scripts, and libraries. + +*homepage*: + +version | toolchain +--------|---------- +``0.32.0`` | ``foss/2024a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/m/modkit.md b/docs/version-specific/supported-software/m/modkit.md new file mode 100644 index 0000000000..e9db779f3e --- /dev/null +++ b/docs/version-specific/supported-software/m/modkit.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# modkit + +A bioinformatics tool for working with modified bases. + +*homepage*: + +version | toolchain +--------|---------- +``0.3.3`` | ``GCCcore/12.3.0`` +``0.4.1`` | ``GCCcore/13.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/m/modred.md b/docs/version-specific/supported-software/m/modred.md deleted file mode 100644 index 72482d17d6..0000000000 --- a/docs/version-specific/supported-software/m/modred.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# modred - -Compute modal decompositions and reduced-order models, easily, efficiently, and in parallel. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0.2`` | ``-Python-3.5.2`` | ``foss/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/molmod.md b/docs/version-specific/supported-software/m/molmod.md index fc3fa76a3a..9e5a8600b6 100644 --- a/docs/version-specific/supported-software/m/molmod.md +++ b/docs/version-specific/supported-software/m/molmod.md @@ -4,31 +4,18 @@ search: --- # molmod -MolMod is a Python library with many compoments that are useful to write molecular modeling programs. +MolMod is a Python library with many components that are useful to write molecular modeling programs. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1`` | ``-Python-2.7.11`` | ``intel/2016a`` -``1.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.1`` | ``-Python-2.7.13`` | ``intel/2017a`` -``1.4.3`` | ``-Python-2.7.14`` | ``intel/2017b`` -``1.4.3`` | ``-Python-3.6.3`` | ``intel/2017b`` -``1.4.4`` | ``-Python-2.7.14`` | ``foss/2018a`` -``1.4.4`` | ``-Python-2.7.14`` | ``intel/2018a`` -``1.4.4`` | ``-Python-2.7.15`` | ``intel/2018b`` -``1.4.4`` | ``-Python-3.7.2`` | ``intel/2019a`` -``1.4.5`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.4.5`` | ``-Python-3.8.2`` | ``foss/2020a`` -``1.4.5`` | ``-Python-3.7.4`` | ``intel/2019b`` -``1.4.5`` | ``-Python-3.8.2`` | ``intel/2020a`` -``1.4.8`` | | ``foss/2020b`` -``1.4.8`` | | ``foss/2021a`` -``1.4.8`` | | ``foss/2021b`` -``1.4.8`` | | ``foss/2022a`` -``1.4.8`` | | ``foss/2023a`` -``1.4.8`` | | ``gfbf/2022b`` +version | toolchain +--------|---------- +``1.4.8`` | ``foss/2020b`` +``1.4.8`` | ``foss/2021a`` +``1.4.8`` | ``foss/2021b`` +``1.4.8`` | ``foss/2022a`` +``1.4.8`` | ``foss/2023a`` +``1.4.8`` | ``gfbf/2022b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/mongolite.md b/docs/version-specific/supported-software/m/mongolite.md index f933307fd1..3977b96c6d 100644 --- a/docs/version-specific/supported-software/m/mongolite.md +++ b/docs/version-specific/supported-software/m/mongolite.md @@ -10,7 +10,6 @@ High-performance MongoDB client based on 'mongo-c-driver' and 'jsonlite'. Inclu version | versionsuffix | toolchain --------|---------------|---------- -``2.3.0`` | ``-R-4.0.0`` | ``foss/2020a`` ``2.3.0`` | ``-R-4.0.3`` | ``foss/2020b`` ``2.3.0`` | ``-R-4.0.4`` | ``foss/2020b`` diff --git a/docs/version-specific/supported-software/m/moonjit.md b/docs/version-specific/supported-software/m/moonjit.md deleted file mode 100644 index 41cd409d0f..0000000000 --- a/docs/version-specific/supported-software/m/moonjit.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# moonjit - -Moonjit is a Just-In-Time Compiler (JIT) for the Lua programming language. Lua is a powerful, dynamic and light-weight programming language. It may be embedded or used as a general-purpose, stand-alone language. - -*homepage*: - -version | toolchain ---------|---------- -``2.2.0`` | ``GCCcore/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/mordecai.md b/docs/version-specific/supported-software/m/mordecai.md deleted file mode 100644 index f317306384..0000000000 --- a/docs/version-specific/supported-software/m/mordecai.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# mordecai - -mordecai is a full text geoparsing as a Python library. Extract the place names from a piece of text, resolve them to the correct place, and return their coordinates and structured geographic information. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0.1`` | ``-Python-3.6.4`` | ``foss/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/mosdepth.md b/docs/version-specific/supported-software/m/mosdepth.md index 91f5f4aca5..f503b668f4 100644 --- a/docs/version-specific/supported-software/m/mosdepth.md +++ b/docs/version-specific/supported-software/m/mosdepth.md @@ -10,10 +10,8 @@ Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing version | toolchain --------|---------- -``0.2.2`` | ``intel/2018a`` -``0.2.3`` | ``intel/2018a`` -``0.2.4`` | ``foss/2018b`` ``0.3.3`` | ``GCC/11.2.0`` +``0.3.9`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/motif.md b/docs/version-specific/supported-software/m/motif.md index 56de1bbc0a..c2447356bc 100644 --- a/docs/version-specific/supported-software/m/motif.md +++ b/docs/version-specific/supported-software/m/motif.md @@ -4,30 +4,18 @@ search: --- # motif -Motif refers to both a graphical user interface (GUI) specification and the widget toolkit for building applications that follow that specification under the X Window System on Unix and other POSIX-compliant systems. It was the standard toolkit for the Common Desktop Environment and thus for Unix. +Motif refers to both a graphical user interface (GUI) specification and the widget toolkit for building applications that follow that specification under the X Window System on Unix and other POSIX-compliant systems. It was the standard toolkit for the Common Desktop Environment and thus for Unix. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.3.5`` | ``foss/2016a`` -``2.3.5`` | ``intel/2016a`` -``2.3.7`` | ``intel/2017a`` ``2.3.8`` | ``GCCcore/10.2.0`` ``2.3.8`` | ``GCCcore/10.3.0`` ``2.3.8`` | ``GCCcore/11.2.0`` ``2.3.8`` | ``GCCcore/11.3.0`` ``2.3.8`` | ``GCCcore/12.2.0`` ``2.3.8`` | ``GCCcore/12.3.0`` -``2.3.8`` | ``GCCcore/8.3.0`` -``2.3.8`` | ``GCCcore/9.3.0`` -``2.3.8`` | ``foss/2017b`` -``2.3.8`` | ``foss/2018a`` -``2.3.8`` | ``foss/2018b`` -``2.3.8`` | ``foss/2019a`` -``2.3.8`` | ``intel/2017b`` -``2.3.8`` | ``intel/2018a`` -``2.3.8`` | ``intel/2019a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/motionSegmentation.md b/docs/version-specific/supported-software/m/motionSegmentation.md deleted file mode 100644 index f4e708c091..0000000000 --- a/docs/version-specific/supported-software/m/motionSegmentation.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# motionSegmentation - -Motion correction, explicit spatio-temporal regularization of motion tracking, random speckles enhancement, and segmentation. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.7.9`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/mpi4py.md b/docs/version-specific/supported-software/m/mpi4py.md index d7626af170..3d2989d937 100644 --- a/docs/version-specific/supported-software/m/mpi4py.md +++ b/docs/version-specific/supported-software/m/mpi4py.md @@ -6,22 +6,14 @@ search: MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.3.1`` | ``-Python-2.7.11-timed-pingpong`` | ``intel/2016a`` -``1.3.1`` | ``-Python-2.7.12-timed-pingpong`` | ``intel/2016b`` -``2.0.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``2.0.0`` | ``-Python-2.7.13-timed-pingpong`` | ``intel/2017a`` -``3.0.0`` | ``-Python-3.6.3`` | ``intel/2017b`` -``3.0.0`` | ``-Python-2.7.14-timed-pingpong`` | ``intel/2018a`` -``3.0.1`` | ``-Python-3.6.6`` | ``intel/2018b`` -``3.0.2`` | ``-timed-pingpong`` | ``gompi/2019a`` -``3.0.2`` | ``-timed-pingpong`` | ``iimpi/2019a`` -``3.1.4`` | | ``gompi/2022b`` -``3.1.4`` | | ``gompi/2023a`` -``3.1.5`` | | ``gompi/2023b`` +version | toolchain +--------|---------- +``3.1.4`` | ``gompi/2022b`` +``3.1.4`` | ``gompi/2023a`` +``3.1.5`` | ``gompi/2023b`` +``4.0.1`` | ``gompi/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/mpiP.md b/docs/version-specific/supported-software/m/mpiP.md deleted file mode 100644 index ff01d1d58c..0000000000 --- a/docs/version-specific/supported-software/m/mpiP.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# mpiP - -mpiP is a lightweight profiling library for MPI applications. Because it only collects statistical information about MPI functions, mpiP generates considerably less overhead and much less data than tracing tools. All the information captured by mpiP is task-local. It only uses communication during report generation, typically at the end of the experiment, to merge results from all of the tasks into one output file. - -*homepage*: - -version | toolchain ---------|---------- -``3.4.1`` | ``gompi/2019a`` -``3.4.1`` | ``iimpi/2019a`` -``3.4.1`` | ``iompi/2019.01`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/mpifileutils.md b/docs/version-specific/supported-software/m/mpifileutils.md index beff320c19..1e667c0465 100644 --- a/docs/version-specific/supported-software/m/mpifileutils.md +++ b/docs/version-specific/supported-software/m/mpifileutils.md @@ -10,14 +10,9 @@ MPI-Based File Utilities For Distributed Systems version | toolchain --------|---------- -``0.10`` | ``gompi/2020a`` -``0.10`` | ``iimpi/2020a`` -``0.10.1`` | ``gompi/2020a`` ``0.11.1`` | ``gompi/2022a`` ``0.11.1`` | ``gompi/2023a`` ``0.11.1`` | ``gompi/2024a`` -``0.9.1`` | ``gompi/2019a`` -``0.9.1`` | ``iimpi/2019a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/mpl-ascii.md b/docs/version-specific/supported-software/m/mpl-ascii.md new file mode 100644 index 0000000000..ae67a4c5ab --- /dev/null +++ b/docs/version-specific/supported-software/m/mpl-ascii.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# mpl-ascii + +A matplotlib backend that produces plots using only ASCII characters + +*homepage*: + +version | toolchain +--------|---------- +``0.10.0`` | ``gfbf/2023a`` +``0.10.0`` | ``gfbf/2023b`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/m/mpmath.md b/docs/version-specific/supported-software/m/mpmath.md index 9e45bc6351..823b4cc0cb 100644 --- a/docs/version-specific/supported-software/m/mpmath.md +++ b/docs/version-specific/supported-software/m/mpmath.md @@ -4,22 +4,17 @@ search: --- # mpmath -mpmath can be used as an arbitrary-precision substitute for Python's float/complex types and math/cmath modules, but also does much more advanced mathematics. Almost any calculation can be performed just as well at 10-digit or 1000-digit precision, with either real or complex numbers, and in many cases mpmath implements efficient algorithms that scale well for extremely high precision work. +mpmath can be used as an arbitrary-precision substitute for Python's float/complex types and math/cmath modules, but also does much more advanced mathematics. Almost any calculation can be performed just as well at 10-digit or 1000-digit precision, with either real or complex numbers, and in many cases mpmath implements efficient algorithms that scale well for extremely high precision work. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.19`` | ``-Python-2.7.11`` | ``foss/2016a`` -``0.19`` | ``-Python-2.7.11`` | ``intel/2016a`` -``1.0.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.0.0`` | ``-Python-2.7.14`` | ``intel/2018a`` -``1.1.0`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` -``1.2.1`` | | ``GCCcore/10.2.0`` -``1.2.1`` | | ``GCCcore/10.3.0`` -``1.2.1`` | | ``GCCcore/11.2.0`` -``1.2.1`` | | ``GCCcore/11.3.0`` -``1.3.0`` | | ``GCCcore/12.3.0`` +version | toolchain +--------|---------- +``1.2.1`` | ``GCCcore/10.2.0`` +``1.2.1`` | ``GCCcore/10.3.0`` +``1.2.1`` | ``GCCcore/11.2.0`` +``1.2.1`` | ``GCCcore/11.3.0`` +``1.3.0`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/mrcfile.md b/docs/version-specific/supported-software/m/mrcfile.md index 01a8f25d9f..5d99f46240 100644 --- a/docs/version-specific/supported-software/m/mrcfile.md +++ b/docs/version-specific/supported-software/m/mrcfile.md @@ -4,7 +4,7 @@ search: --- # mrcfile -mrcfile is a Python implementation of the MRC2014 file format, which is used in structural biology to store image and volume data. It allows MRC files to be created and opened easily using a very simple API, which exposes the file’s header and data as numpy arrays. The code runs in Python 2 and 3 and is fully unit-tested. This library aims to allow users and developers to read and write standard- compliant MRC files in Python as easily as possible, and with no dependencies on any compiled libraries except numpy. You can use it interactively to inspect files, correct headers and so on, or in scripts and larger software packages to provide basic MRC file I/O functions. +mrcfile is a Python implementation of the MRC2014 file format, which is used in structural biology to store image and volume data. It allows MRC files to be created and opened easily using a very simple API, which exposes the file’s header and data as numpy arrays. The code runs in Python 2 and 3 and is fully unit-tested. This library aims to allow users and developers to read and write standard- compliant MRC files in Python as easily as possible, and with no dependencies on any compiled libraries except numpy. You can use it interactively to inspect files, correct headers and so on, or in scripts and larger software packages to provide basic MRC file I/O functions. *homepage*: @@ -16,6 +16,7 @@ version | toolchain ``1.4.3`` | ``foss/2022a`` ``1.4.3`` | ``gfbf/2022b`` ``1.5.0`` | ``foss/2023a`` +``1.5.4`` | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/msgpack-c.md b/docs/version-specific/supported-software/m/msgpack-c.md index c30d3beb4c..7c7fb96fcf 100644 --- a/docs/version-specific/supported-software/m/msgpack-c.md +++ b/docs/version-specific/supported-software/m/msgpack-c.md @@ -4,7 +4,7 @@ search: --- # msgpack-c -MessagePack is an efficient binary serialization format, which lets you exchange data among multiple languages like JSON, except that it's faster and smaller. Small integers are encoded into a single byte while typical short strings require only one extra byte in addition to the strings themselves. +MessagePack is an efficient binary serialization format, which lets you exchange data among multiple languages like JSON, except that it's faster and smaller. Small integers are encoded into a single byte while typical short strings require only one extra byte in addition to the strings themselves. *homepage*: diff --git a/docs/version-specific/supported-software/m/msisensor-pro.md b/docs/version-specific/supported-software/m/msisensor-pro.md new file mode 100644 index 0000000000..592c8cc100 --- /dev/null +++ b/docs/version-specific/supported-software/m/msisensor-pro.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# msisensor-pro + +MSIsensor-pro evaluates Microsatellite Instability (MSI) for cancer patients with next generation sequencing data. It accepts the whole genome sequencing, whole exome sequencing and target region (panel) sequencing data as input. + +*homepage*: + +version | toolchain +--------|---------- +``1.3.0`` | ``GCC/13.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/m/msprime.md b/docs/version-specific/supported-software/m/msprime.md index 0e5e87c8e7..ab35596234 100644 --- a/docs/version-specific/supported-software/m/msprime.md +++ b/docs/version-specific/supported-software/m/msprime.md @@ -8,11 +8,10 @@ msprime is a coalescent simulator and library for processing tree-based genetic *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.7.0`` | ``-Python-3.7.2`` | ``intel/2019a`` -``1.2.0`` | | ``foss/2021b`` -``1.2.0`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``1.2.0`` | ``foss/2021b`` +``1.2.0`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/mstore.md b/docs/version-specific/supported-software/m/mstore.md index 5bf914b1c7..04d8ffe425 100644 --- a/docs/version-specific/supported-software/m/mstore.md +++ b/docs/version-specific/supported-software/m/mstore.md @@ -16,6 +16,7 @@ version | toolchain ``0.2.0`` | ``intel-compilers/2022.1.0`` ``0.2.0`` | ``intel-compilers/2022.2.1`` ``0.3.0`` | ``GCC/12.3.0`` +``0.3.0`` | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/muParser.md b/docs/version-specific/supported-software/m/muParser.md index e8d3d88070..764181067d 100644 --- a/docs/version-specific/supported-software/m/muParser.md +++ b/docs/version-specific/supported-software/m/muParser.md @@ -6,16 +6,15 @@ search: muParser is an extensible high performance math expression parser library written in C++. It works by transforming a mathematical expression into bytecode and precalculating constant parts of the expression. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.2.5`` | ``GCCcore/6.4.0`` ``2.3.2`` | ``GCCcore/10.2.0`` -``2.3.2`` | ``GCCcore/9.3.0`` ``2.3.3`` | ``GCCcore/10.3.0`` ``2.3.4`` | ``GCCcore/11.3.0`` ``2.3.4`` | ``GCCcore/12.2.0`` +``2.3.4`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/multicharge.md b/docs/version-specific/supported-software/m/multicharge.md index 731c126e1e..a980f3f1f7 100644 --- a/docs/version-specific/supported-software/m/multicharge.md +++ b/docs/version-specific/supported-software/m/multicharge.md @@ -14,6 +14,8 @@ version | toolchain ``0.2.0`` | ``iimkl/2022a`` ``0.2.0`` | ``iimkl/2022b`` ``0.3.0`` | ``gfbf/2023a`` +``0.3.0`` | ``gfbf/2023b`` +``0.3.0`` | ``gomkl/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/multichoose.md b/docs/version-specific/supported-software/m/multichoose.md index d9bb676151..1899f79422 100644 --- a/docs/version-specific/supported-software/m/multichoose.md +++ b/docs/version-specific/supported-software/m/multichoose.md @@ -16,7 +16,6 @@ version | toolchain ``1.0.3`` | ``GCCcore/11.3.0`` ``1.0.3`` | ``GCCcore/12.2.0`` ``1.0.3`` | ``GCCcore/12.3.0`` -``1.0.3`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/multiprocess.md b/docs/version-specific/supported-software/m/multiprocess.md index aa945e943e..fe259f4768 100644 --- a/docs/version-specific/supported-software/m/multiprocess.md +++ b/docs/version-specific/supported-software/m/multiprocess.md @@ -12,6 +12,8 @@ version | toolchain --------|---------- ``0.70.15`` | ``gfbf/2022b`` ``0.70.15`` | ``gfbf/2023a`` +``0.70.16`` | ``gfbf/2023b`` +``0.70.17`` | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/mutil.md b/docs/version-specific/supported-software/m/mutil.md deleted file mode 100644 index 9b1711498c..0000000000 --- a/docs/version-specific/supported-software/m/mutil.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# mutil - -Mutil is a set of standard utilities that have been parallelized to maximize performance on modern file systems. These currently include multi-threaded drop-in replacements for cp and md5sum from GNU coreutils, which have achieved 10/30x rates on one/many nodes. - -*homepage*: - -version | toolchain ---------|---------- -``1.822.3`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/mxml.md b/docs/version-specific/supported-software/m/mxml.md deleted file mode 100644 index 97ad16fce1..0000000000 --- a/docs/version-specific/supported-software/m/mxml.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# mxml - -Mini-XML is a tiny XML library that you can use to read and write XML and XML-like data files in your application without requiring large non-standard libraries. - -*homepage*: - -version | toolchain ---------|---------- -``3.2`` | ``GCCcore/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/mxmlplus.md b/docs/version-specific/supported-software/m/mxmlplus.md deleted file mode 100644 index b0c8ccb57b..0000000000 --- a/docs/version-specific/supported-software/m/mxmlplus.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# mxmlplus - -Mxml is a pure C library (yet having an object oriented layout) that is meant to help developers implementing XML file interpretation in their projects. - -*homepage*: - -version | toolchain ---------|---------- -``0.9.2`` | ``GCC/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/mygene.md b/docs/version-specific/supported-software/m/mygene.md index 192f76d1a7..d0374de075 100644 --- a/docs/version-specific/supported-software/m/mygene.md +++ b/docs/version-specific/supported-software/m/mygene.md @@ -10,7 +10,6 @@ Python Client for MyGene.Info services. version | toolchain --------|---------- -``3.1.0`` | ``intel/2019a`` ``3.2.2`` | ``foss/2022a`` ``3.2.2`` | ``foss/2022b`` ``3.2.2`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/m/mympingpong.md b/docs/version-specific/supported-software/m/mympingpong.md deleted file mode 100644 index 1547912f21..0000000000 --- a/docs/version-specific/supported-software/m/mympingpong.md +++ /dev/null @@ -1,22 +0,0 @@ ---- -search: - boost: 0.5 ---- -# mympingpong - -A mpi4py based random pair pingpong network stress test. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.7.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``0.7.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.8.0`` | ``-Python-2.7.15`` | ``foss/2019a`` -``0.8.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``0.8.0`` | ``-Python-2.7.14`` | ``intel/2018a`` -``0.8.0`` | ``-Python-2.7.15`` | ``intel/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/mypy.md b/docs/version-specific/supported-software/m/mypy.md deleted file mode 100644 index 4c451a20cf..0000000000 --- a/docs/version-specific/supported-software/m/mypy.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# mypy - -Optional static typing for Python - -*homepage*: - -version | toolchain ---------|---------- -``0.4.5`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/mysqlclient.md b/docs/version-specific/supported-software/m/mysqlclient.md deleted file mode 100644 index 48b52e2eff..0000000000 --- a/docs/version-specific/supported-software/m/mysqlclient.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# mysqlclient - -Python interface to MySQL - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.3.7`` | ``-Python-2.7.11`` | ``foss/2016a`` -``1.3.7`` | ``-Python-2.7.11`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/NAG.md b/docs/version-specific/supported-software/n/NAG.md index 2b42b844e2..0ea5280ae4 100644 --- a/docs/version-specific/supported-software/n/NAG.md +++ b/docs/version-specific/supported-software/n/NAG.md @@ -10,9 +10,6 @@ The worlds largest collection of robust, documented, tested and maintained numer version | toolchain --------|---------- -``24`` | ``PGI/17.4-GCC-6.4.0-2.28`` -``26`` | ``GCCcore/6.4.0`` -``26`` | ``intel/2018a`` ``7.1`` | ``gompi/2022b`` diff --git a/docs/version-specific/supported-software/n/NAGfor.md b/docs/version-specific/supported-software/n/NAGfor.md index dc850b020f..741e0897ab 100644 --- a/docs/version-specific/supported-software/n/NAGfor.md +++ b/docs/version-specific/supported-software/n/NAGfor.md @@ -10,7 +10,6 @@ The checking compiler for improved code portability and detailed error reporting version | toolchain --------|---------- -``6.2.14`` | ``system`` ``7.1`` | ``system`` diff --git a/docs/version-specific/supported-software/n/NAMD.md b/docs/version-specific/supported-software/n/NAMD.md index b954e9be08..e60c8a26ed 100644 --- a/docs/version-specific/supported-software/n/NAMD.md +++ b/docs/version-specific/supported-software/n/NAMD.md @@ -6,30 +6,17 @@ search: NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2.11`` | ``-mpi`` | ``intel/2016a`` -``2.12`` | ``-CUDA-8.0.61`` | ``foss/2016b`` -``2.12`` | ``-mpi`` | ``foss/2017a`` -``2.12`` | ``-mpi`` | ``foss/2017b`` -``2.12`` | ``-mpi`` | ``intel/2017a`` -``2.12`` | ``-mpi`` | ``intel/2017b`` -``2.13`` | ``-mpi`` | ``foss/2018b`` -``2.13`` | ``-mpi`` | ``foss/2019b`` -``2.13`` | | ``fosscuda/2018b`` -``2.13`` | ``-mpi`` | ``intel/2018b`` -``2.14`` | ``-mpi`` | ``foss/2019b`` -``2.14`` | ``-mpi`` | ``foss/2020a`` ``2.14`` | ``-mpi`` | ``foss/2020b`` ``2.14`` | ``-CUDA-11.3.1`` | ``foss/2021a`` ``2.14`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``2.14`` | ``-mpi`` | ``foss/2022a`` ``2.14`` | ``-mpi`` | ``foss/2023a`` -``2.14`` | | ``fosscuda/2019b`` ``2.14`` | | ``fosscuda/2020b`` -``2.14`` | ``-mpi`` | ``intel/2020a`` +``3.0`` | ``-mpi`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NASM.md b/docs/version-specific/supported-software/n/NASM.md index d55df4fba6..2a0fc39a76 100644 --- a/docs/version-specific/supported-software/n/NASM.md +++ b/docs/version-specific/supported-software/n/NASM.md @@ -6,29 +6,10 @@ search: NASM: General-purpose x86 assembler -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.11.08`` | ``GCCcore/5.4.0`` -``2.11.08`` | ``foss/2016a`` -``2.11.08`` | ``foss/2016b`` -``2.11.08`` | ``gimkl/2.11.5`` -``2.11.08`` | ``intel/2016a`` -``2.12.01`` | ``foss/2016a`` -``2.12.01`` | ``intel/2016a`` -``2.12.02`` | ``foss/2016a`` -``2.12.02`` | ``foss/2016b`` -``2.12.02`` | ``intel/2016b`` -``2.12.02`` | ``intel/2017a`` -``2.12.02`` | ``system`` -``2.13.01`` | ``GCCcore/6.3.0`` -``2.13.01`` | ``GCCcore/6.4.0`` -``2.13.03`` | ``GCCcore/6.4.0`` -``2.13.03`` | ``GCCcore/7.3.0`` -``2.14.02`` | ``GCCcore/8.2.0`` -``2.14.02`` | ``GCCcore/8.3.0`` -``2.14.02`` | ``GCCcore/9.3.0`` ``2.15.05`` | ``GCCcore/10.2.0`` ``2.15.05`` | ``GCCcore/10.3.0`` ``2.15.05`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/n/NBO.md b/docs/version-specific/supported-software/n/NBO.md index ea1c36096b..a5d520cc09 100644 --- a/docs/version-specific/supported-software/n/NBO.md +++ b/docs/version-specific/supported-software/n/NBO.md @@ -4,18 +4,15 @@ search: --- # NBO -Generalized Natural Bond Orbital algorithm to handle systems characterized by periodic symmetry. +The Natural Bond Orbital (NBO) program is a discovery tool for chemical insights from complex wavefunctions. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.1`` | ``intel/2016a`` -``7.0`` | ``intel/2017b`` ``7.0.10`` | ``GCC/10.2.0`` ``7.0.10`` | ``GCC/10.3.0`` ``7.0.10`` | ``GCC/11.2.0`` -``7.0.10`` | ``GCC/9.3.0`` ``7.0.10`` | ``gfbf/2022a`` ``7.0.10`` | ``gfbf/2022b`` diff --git a/docs/version-specific/supported-software/n/NCBI-Toolkit.md b/docs/version-specific/supported-software/n/NCBI-Toolkit.md deleted file mode 100644 index 46fda81759..0000000000 --- a/docs/version-specific/supported-software/n/NCBI-Toolkit.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# NCBI-Toolkit - -The NCBI Toolkit is a collection of utilities developed for the production and distribution of GenBank, Entrez, BLAST, and related services by the National Center for Biotechnology Information. - -*homepage*: - -version | toolchain ---------|---------- -``18.0.0`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/NCCL-tests.md b/docs/version-specific/supported-software/n/NCCL-tests.md index e88a87d9aa..b4c8dd3141 100644 --- a/docs/version-specific/supported-software/n/NCCL-tests.md +++ b/docs/version-specific/supported-software/n/NCCL-tests.md @@ -10,7 +10,6 @@ Tests check both the performance and the correctness of NCCL operations. version | versionsuffix | toolchain --------|---------------|---------- -``2.0.0`` | | ``gompic/2019b`` ``2.13.6`` | ``-CUDA-11.7.0`` | ``gompi/2022a`` diff --git a/docs/version-specific/supported-software/n/NCCL.md b/docs/version-specific/supported-software/n/NCCL.md index 9a80024b34..143717f7d2 100644 --- a/docs/version-specific/supported-software/n/NCCL.md +++ b/docs/version-specific/supported-software/n/NCCL.md @@ -10,24 +10,18 @@ The NVIDIA Collective Communications Library (NCCL) implements multi-GPU and mul version | versionsuffix | toolchain --------|---------------|---------- -``2.1.4`` | ``-CUDA-9.0.176`` | ``system`` ``2.10.3`` | ``-CUDA-11.3.1`` | ``GCCcore/10.3.0`` ``2.10.3`` | ``-CUDA-11.4.1`` | ``GCCcore/11.2.0`` ``2.10.3`` | ``-CUDA-11.5.2`` | ``GCCcore/11.2.0`` -``2.11.4`` | | ``gcccuda/2019b`` ``2.12.12`` | ``-CUDA-11.7.0`` | ``GCCcore/11.3.0`` ``2.16.2`` | ``-CUDA-11.7.0`` | ``GCCcore/12.2.0`` ``2.16.2`` | ``-CUDA-12.0.0`` | ``GCCcore/12.2.0`` ``2.18.3`` | ``-CUDA-12.1.1`` | ``GCCcore/12.3.0`` -``2.2.13`` | ``-CUDA-9.2.148.1`` | ``system`` ``2.20.5`` | ``-CUDA-12.4.0`` | ``GCCcore/13.2.0`` -``2.3.7`` | | ``fosscuda/2018b`` -``2.4.2`` | | ``gcccuda/2019a`` -``2.4.8`` | | ``gcccuda/2019b`` +``2.22.3`` | ``-CUDA-12.6.0`` | ``GCCcore/13.3.0`` ``2.8.3`` | ``-CUDA-11.0.2`` | ``system`` ``2.8.3`` | ``-CUDA-11.1.1`` | ``system`` ``2.8.3`` | ``-CUDA-11.1.1`` | ``GCCcore/10.2.0`` -``2.8.3`` | ``-CUDA-11.0.2`` | ``GCCcore/9.3.0`` ``2.9.9`` | ``-CUDA-11.3.1`` | ``system`` diff --git a/docs/version-specific/supported-software/n/NCIPLOT.md b/docs/version-specific/supported-software/n/NCIPLOT.md index b76778f475..ad5578a51f 100644 --- a/docs/version-specific/supported-software/n/NCIPLOT.md +++ b/docs/version-specific/supported-software/n/NCIPLOT.md @@ -10,9 +10,8 @@ NCIPLOT is a program for revealing non covalent interactions based on the reduc version | toolchain --------|---------- -``4.0-20190718`` | ``iccifort/2019.5.281`` -``4.0-20200106`` | ``iccifort/2019.5.281`` ``4.0-20200624`` | ``GCC/11.2.0`` +``4.2-20221021`` | ``intel-compilers/2022.1.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NCL.md b/docs/version-specific/supported-software/n/NCL.md index db0307e20f..46cd26653b 100644 --- a/docs/version-specific/supported-software/n/NCL.md +++ b/docs/version-specific/supported-software/n/NCL.md @@ -4,23 +4,14 @@ search: --- # NCL -NCL is an interpreted language designed specifically for scientific data analysis and visualization. +NCL is an interpreted language designed specifically for scientific data analysis and visualization. -*homepage*: +*homepage*: version | toolchain --------|---------- -``6.4.0`` | ``intel/2017a`` -``6.4.0`` | ``intel/2017b`` -``6.4.0`` | ``intel/2018a`` -``6.5.0`` | ``intel/2018a`` -``6.6.2`` | ``foss/2018b`` -``6.6.2`` | ``foss/2020a`` ``6.6.2`` | ``foss/2020b`` ``6.6.2`` | ``foss/2021a`` -``6.6.2`` | ``intel/2018b`` -``6.6.2`` | ``intel/2019b`` -``6.6.2`` | ``intel/2020a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NCO.md b/docs/version-specific/supported-software/n/NCO.md index 0995143f8d..f750b2f224 100644 --- a/docs/version-specific/supported-software/n/NCO.md +++ b/docs/version-specific/supported-software/n/NCO.md @@ -6,31 +6,20 @@ search: manipulates and analyzes data stored in netCDF-accessible formats, including DAP, HDF4, and HDF5 -*homepage*: +*homepage*: version | toolchain --------|---------- -``4.6.0`` | ``foss/2016a`` -``4.6.6`` | ``intel/2017a`` -``4.7.0`` | ``intel/2017b`` -``4.7.1`` | ``intel/2017b`` -``4.7.4`` | ``foss/2017b`` -``4.7.6`` | ``intel/2018a`` -``4.7.9`` | ``foss/2018b`` -``4.7.9`` | ``intel/2018b`` -``4.8.1`` | ``foss/2019a`` -``4.9.3`` | ``foss/2019b`` -``4.9.7`` | ``foss/2020a`` ``4.9.7`` | ``foss/2020b`` ``5.0.1`` | ``foss/2021a`` ``5.0.3`` | ``foss/2021b`` ``5.0.3`` | ``intel/2021b`` -``5.0.6`` | ``intel/2019b`` ``5.1.0`` | ``foss/2022a`` ``5.1.3`` | ``foss/2021a`` ``5.1.3`` | ``foss/2022a`` ``5.1.9`` | ``foss/2023a`` ``5.1.9`` | ``intel/2022a`` +``5.2.9`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NECAT.md b/docs/version-specific/supported-software/n/NECAT.md index f180227f13..f57edc8224 100644 --- a/docs/version-specific/supported-software/n/NECAT.md +++ b/docs/version-specific/supported-software/n/NECAT.md @@ -4,12 +4,14 @@ search: --- # NECAT -NECAT is an error correction and de-novo assembly tool for Nanopore long noisy reads.). +NECAT is an error correction and de-novo assembly tool for Nanopore long noisy reads. *homepage*: version | toolchain --------|---------- +``0.0.1`` | ``GCCcore/12.3.0`` +``0.0.1`` | ``GCCcore/13.2.0`` ``0.0.1`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/n/NECI.md b/docs/version-specific/supported-software/n/NECI.md index 59498bbccb..18efecf2f5 100644 --- a/docs/version-specific/supported-software/n/NECI.md +++ b/docs/version-specific/supported-software/n/NECI.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``20220711`` | ``foss/2022a`` ``20230620`` | ``foss/2022b`` +``20230620`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NEURON.md b/docs/version-specific/supported-software/n/NEURON.md index b0dd3d562c..1a6e043b76 100644 --- a/docs/version-specific/supported-software/n/NEURON.md +++ b/docs/version-specific/supported-software/n/NEURON.md @@ -6,13 +6,12 @@ search: Empirically-based simulations of neurons and networks of neurons. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``7.4`` | | ``intel/2016b`` -``7.6.5`` | ``-Python-2.7.15`` | ``intel/2018b`` -``7.8.2`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``7.8.2`` | ``foss/2021b`` +``8.2.6`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NEdit.md b/docs/version-specific/supported-software/n/NEdit.md deleted file mode 100644 index d71d0f5a5a..0000000000 --- a/docs/version-specific/supported-software/n/NEdit.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# NEdit - -NEdit is a multi-purpose text editor for the X Window System, which combines a standard, easy to use, graphical user interface with the thorough functionality and stability required by users who edit text eight hours a day. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``5.5`` | ``-Linux-x86`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/NFFT.md b/docs/version-specific/supported-software/n/NFFT.md index 9247ba54d2..170c6c331d 100644 --- a/docs/version-specific/supported-software/n/NFFT.md +++ b/docs/version-specific/supported-software/n/NFFT.md @@ -4,7 +4,7 @@ search: --- # NFFT -The NFFT (nonequispaced fast Fourier transform or nonuniform fast Fourier transform) is a C subroutine library for computing the nonequispaced discrete Fourier transform (NDFT) and its generalisations in one or more dimensions, of arbitrary input size, and of complex data. +The NFFT (nonequispaced fast Fourier transform or nonuniform fast Fourier transform) is a C subroutine library for computing the nonequispaced discrete Fourier transform (NDFT) and its generalisations in one or more dimensions, of arbitrary input size, and of complex data. *homepage*: @@ -12,9 +12,6 @@ version | toolchain --------|---------- ``3.1.3`` | ``foss/2020b`` ``3.1.3`` | ``fosscuda/2020b`` -``3.5.1`` | ``foss/2018b`` -``3.5.1`` | ``foss/2019a`` -``3.5.2`` | ``foss/2020a`` ``3.5.2`` | ``foss/2021a`` ``3.5.2`` | ``foss/2021b`` ``3.5.3`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/n/NGS-Python.md b/docs/version-specific/supported-software/n/NGS-Python.md deleted file mode 100644 index 3e9db0e261..0000000000 --- a/docs/version-specific/supported-software/n/NGS-Python.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# NGS-Python - -NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.3`` | ``-Python-2.7.11`` | ``intel/2016a`` -``2.10.4`` | ``-Python-2.7.16`` | ``gompi/2019b`` -``2.9.3`` | ``-Python-3.6.6`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/NGS.md b/docs/version-specific/supported-software/n/NGS.md index c34a6f2a34..e742cf08e5 100644 --- a/docs/version-specific/supported-software/n/NGS.md +++ b/docs/version-specific/supported-software/n/NGS.md @@ -4,27 +4,16 @@ search: --- # NGS -NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. +NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.2.3`` | | ``foss/2016b`` -``1.2.3`` | | ``intel/2016a`` -``1.2.5`` | | ``foss/2016b`` -``1.3.0`` | | ``GCCcore/6.4.0`` -``1.3.0`` | | ``intel/2017a`` -``2.10.0`` | ``-Java-1.8`` | ``GCCcore/8.2.0`` -``2.10.0`` | ``-Java-11`` | ``GCCcore/8.2.0`` -``2.10.4`` | ``-Java-11`` | ``GCCcore/8.3.0`` -``2.10.5`` | | ``GCCcore/9.3.0`` ``2.10.9`` | | ``GCCcore/10.2.0`` ``2.10.9`` | | ``GCCcore/10.3.0`` ``2.11.2`` | | ``GCCcore/11.2.0`` -``2.9.1`` | ``-Java-1.8.0_162`` | ``foss/2018a`` -``2.9.1`` | ``-Java-1.8.0_162`` | ``intel/2018a`` -``2.9.3`` | ``-Java-1.8`` | ``foss/2018b`` +``3.0.1`` | ``-Java-11`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NGSadmix.md b/docs/version-specific/supported-software/n/NGSadmix.md deleted file mode 100644 index 3b105139dc..0000000000 --- a/docs/version-specific/supported-software/n/NGSadmix.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# NGSadmix - -NGSadmix is a tool for finding admixture proportions from NGS data, based on genotype likelihoods. - -*homepage*: - -version | toolchain ---------|---------- -``32`` | ``GCC/7.3.0-2.30`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/NGSpeciesID.md b/docs/version-specific/supported-software/n/NGSpeciesID.md index f0bd1c744a..375dc735ca 100644 --- a/docs/version-specific/supported-software/n/NGSpeciesID.md +++ b/docs/version-specific/supported-software/n/NGSpeciesID.md @@ -8,12 +8,11 @@ NGSpeciesID is a tool for clustering and consensus forming of targeted ONT reads *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1.1.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.1.2.1`` | | ``foss/2021b`` -``0.3.0`` | | ``foss/2022b`` -``0.3.0`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``0.1.2.1`` | ``foss/2021b`` +``0.3.0`` | ``foss/2022b`` +``0.3.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NIMBLE.md b/docs/version-specific/supported-software/n/NIMBLE.md deleted file mode 100644 index fc41b96708..0000000000 --- a/docs/version-specific/supported-software/n/NIMBLE.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# NIMBLE - -NIMBLE is a system for building and sharing analysis methods for statistical models, especially for hierarchical models and computationally-intensive methods. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.7.0`` | ``-R-3.5.1`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/NIfTI.md b/docs/version-specific/supported-software/n/NIfTI.md deleted file mode 100644 index 0e51c4fb02..0000000000 --- a/docs/version-specific/supported-software/n/NIfTI.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# NIfTI - -Niftilib is a set of i/o libraries for reading and writing files in the nifti-1 data format. - -*homepage*: - -version | toolchain ---------|---------- -``2.0.0`` | ``GCCcore/6.4.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/NLMpy.md b/docs/version-specific/supported-software/n/NLMpy.md deleted file mode 100644 index 121307a4a3..0000000000 --- a/docs/version-specific/supported-software/n/NLMpy.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# NLMpy - -NLMpy is a Python package for the creation of neutral landscape models that are widely used in the modelling of ecological patterns and processes across landscapes. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1.5`` | ``-Python-3.7.4`` | ``intel/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/NLTK.md b/docs/version-specific/supported-software/n/NLTK.md index 587a578e7d..f1898aadca 100644 --- a/docs/version-specific/supported-software/n/NLTK.md +++ b/docs/version-specific/supported-software/n/NLTK.md @@ -6,20 +6,15 @@ search: NLTK is a leading platform for building Python programs to work with human language data. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.2.2`` | ``-Python-2.7.13`` | ``intel/2017a`` -``3.2.4`` | ``-Python-2.7.13`` | ``intel/2017a`` -``3.5`` | ``-Python-3.7.4`` | ``foss/2019b`` -``3.5`` | ``-Python-3.8.2`` | ``foss/2020a`` -``3.5`` | ``-Python-3.8.2`` | ``fosscuda/2020a`` -``3.6.7`` | | ``foss/2021a`` -``3.7`` | | ``foss/2021b`` -``3.8.1`` | | ``foss/2022b`` -``3.8.1`` | | ``foss/2023a`` -``3.8.1`` | | ``foss/2023b`` +version | toolchain +--------|---------- +``3.6.7`` | ``foss/2021a`` +``3.7`` | ``foss/2021b`` +``3.8.1`` | ``foss/2022b`` +``3.8.1`` | ``foss/2023a`` +``3.8.1`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NLopt.md b/docs/version-specific/supported-software/n/NLopt.md index 36f7ae13af..156662850a 100644 --- a/docs/version-specific/supported-software/n/NLopt.md +++ b/docs/version-specific/supported-software/n/NLopt.md @@ -4,28 +4,12 @@ search: --- # NLopt -NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms. +NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms. *homepage*: version | toolchain --------|---------- -``2.4.2`` | ``GCC/5.4.0-2.26`` -``2.4.2`` | ``GCCcore/7.3.0`` -``2.4.2`` | ``foss/2016a`` -``2.4.2`` | ``foss/2016b`` -``2.4.2`` | ``foss/2017b`` -``2.4.2`` | ``foss/2018a`` -``2.4.2`` | ``iccifort/2016.3.210-GCC-5.4.0-2.26`` -``2.4.2`` | ``intel/2016a`` -``2.4.2`` | ``intel/2016b`` -``2.4.2`` | ``intel/2017a`` -``2.4.2`` | ``intel/2017b`` -``2.4.2`` | ``intel/2018a`` -``2.4.2`` | ``iomkl/2018a`` -``2.6.1`` | ``GCCcore/8.2.0`` -``2.6.1`` | ``GCCcore/8.3.0`` -``2.6.1`` | ``GCCcore/9.3.0`` ``2.6.2`` | ``GCCcore/10.2.0`` ``2.7.0`` | ``GCCcore/10.3.0`` ``2.7.0`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/n/NOVOPlasty.md b/docs/version-specific/supported-software/n/NOVOPlasty.md deleted file mode 100644 index 427c96d636..0000000000 --- a/docs/version-specific/supported-software/n/NOVOPlasty.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# NOVOPlasty - -NOVOPlasty is a de novo assembler and heteroplasmy/variance caller for short circular genomes. - -*homepage*: - -version | toolchain ---------|---------- -``3.7`` | ``GCCcore/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/NRGLjubljana.md b/docs/version-specific/supported-software/n/NRGLjubljana.md deleted file mode 100644 index cb3c6c43a2..0000000000 --- a/docs/version-specific/supported-software/n/NRGLjubljana.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# NRGLjubljana - -NRG Ljubljana is an efficient implementation of the numerical renormalization group (NRG) technique for solving quantum impurity problems that arise as simplified models of magnetic impurities and as effective models in the dynamical mean field theory (DMFT) approach to bulk correlated materials. - -*homepage*: - -version | toolchain ---------|---------- -``2.4.3.23`` | ``foss/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/NSPR.md b/docs/version-specific/supported-software/n/NSPR.md index d98e2c6823..e915cac5fa 100644 --- a/docs/version-specific/supported-software/n/NSPR.md +++ b/docs/version-specific/supported-software/n/NSPR.md @@ -10,11 +10,6 @@ Netscape Portable Runtime (NSPR) provides a platform-neutral API for system leve version | toolchain --------|---------- -``4.20`` | ``GCCcore/6.4.0`` -``4.20`` | ``GCCcore/7.3.0`` -``4.21`` | ``GCCcore/8.2.0`` -``4.21`` | ``GCCcore/8.3.0`` -``4.25`` | ``GCCcore/9.3.0`` ``4.29`` | ``GCCcore/10.2.0`` ``4.30`` | ``GCCcore/10.3.0`` ``4.32`` | ``GCCcore/11.2.0`` @@ -22,6 +17,7 @@ version | toolchain ``4.35`` | ``GCCcore/12.2.0`` ``4.35`` | ``GCCcore/12.3.0`` ``4.35`` | ``GCCcore/13.2.0`` +``4.35`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NSS.md b/docs/version-specific/supported-software/n/NSS.md index e0fcfff21a..61a6ff73af 100644 --- a/docs/version-specific/supported-software/n/NSS.md +++ b/docs/version-specific/supported-software/n/NSS.md @@ -10,11 +10,7 @@ Network Security Services (NSS) is a set of libraries designed to support cross- version | toolchain --------|---------- -``3.39`` | ``GCCcore/6.4.0`` -``3.39`` | ``GCCcore/7.3.0`` -``3.42.1`` | ``GCCcore/8.2.0`` -``3.45`` | ``GCCcore/8.3.0`` -``3.51`` | ``GCCcore/9.3.0`` +``3.104`` | ``GCCcore/13.3.0`` ``3.57`` | ``GCCcore/10.2.0`` ``3.65`` | ``GCCcore/10.3.0`` ``3.69`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/n/NTL.md b/docs/version-specific/supported-software/n/NTL.md index c261c2c227..f5ee1dc494 100644 --- a/docs/version-specific/supported-software/n/NTL.md +++ b/docs/version-specific/supported-software/n/NTL.md @@ -10,11 +10,11 @@ NTL is a high-performance, portable C++ library providing data structures and al version | toolchain --------|---------- -``11.3.4`` | ``GCC/8.2.0-2.31.1`` ``11.5.1`` | ``GCC/11.2.0`` ``11.5.1`` | ``GCC/11.3.0`` ``11.5.1`` | ``GCC/12.2.0`` ``11.5.1`` | ``GCC/13.2.0`` +``11.5.1`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NTPoly.md b/docs/version-specific/supported-software/n/NTPoly.md index bbafbb4ca0..1703e03746 100644 --- a/docs/version-specific/supported-software/n/NTPoly.md +++ b/docs/version-specific/supported-software/n/NTPoly.md @@ -4,7 +4,7 @@ search: --- # NTPoly -is a massively parallel library for computing the functions of sparse, symmetric matrices based on polynomial expansions. For sufficiently sparse matrices, most of the matrix functions in NTPoly can be computed in linear time. +is a massively parallel library for computing the functions of sparse, symmetric matrices based on polynomial expansions. For sufficiently sparse matrices, most of the matrix functions in NTPoly can be computed in linear time. *homepage*: diff --git a/docs/version-specific/supported-software/n/NVHPC.md b/docs/version-specific/supported-software/n/NVHPC.md index f91a4b0a93..5ba7d8b78d 100644 --- a/docs/version-specific/supported-software/n/NVHPC.md +++ b/docs/version-specific/supported-software/n/NVHPC.md @@ -10,9 +10,6 @@ C, C++ and Fortran compilers included with the NVIDIA HPC SDK (previously: PGI) version | versionsuffix | toolchain --------|---------------|---------- -``20.11`` | | ``system`` -``20.7`` | | ``system`` -``20.9`` | | ``system`` ``21.11`` | | ``system`` ``21.2`` | | ``system`` ``21.3`` | | ``system`` @@ -26,6 +23,9 @@ version | versionsuffix | toolchain ``23.7`` | ``-CUDA-12.1.1`` | ``system`` ``23.7`` | ``-CUDA-12.2.0`` | ``system`` ``24.1`` | ``-CUDA-12.3.0`` | ``system`` +``24.11`` | ``-CUDA-12.6.0`` | ``system`` +``24.9`` | ``-CUDA-12.6.0`` | ``system`` +``25.1`` | ``-CUDA-12.6.0`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NVSHMEM.md b/docs/version-specific/supported-software/n/NVSHMEM.md index cd26be3191..4edd3817d5 100644 --- a/docs/version-specific/supported-software/n/NVSHMEM.md +++ b/docs/version-specific/supported-software/n/NVSHMEM.md @@ -4,7 +4,7 @@ search: --- # NVSHMEM -NVSHMEM is a parallel programming interface based on OpenSHMEM that provides efficient and scalable communication for NVIDIA GPU clusters. NVSHMEM creates a global address space for data that spans the memory of multiple GPUs and can be accessed with fine-grained GPU-initiated operations, CPU-initiated operations, and operations on CUDA streams. +NVSHMEM is a parallel programming interface based on OpenSHMEM that provides efficient and scalable communication for NVIDIA GPU clusters. NVSHMEM creates a global address space for data that spans the memory of multiple GPUs and can be accessed with fine-grained GPU-initiated operations, CPU-initiated operations, and operations on CUDA streams. *homepage*: diff --git a/docs/version-specific/supported-software/n/NWChem.md b/docs/version-specific/supported-software/n/NWChem.md index dc27a3ebaa..24a5a8b613 100644 --- a/docs/version-specific/supported-software/n/NWChem.md +++ b/docs/version-specific/supported-software/n/NWChem.md @@ -6,19 +6,14 @@ search: NWChem aims to provide its users with computational chemistry tools that are scalable both in their ability to treat large scientific computational chemistry problems efficiently, and in their use of available parallel computing resources from high-performance parallel supercomputers to conventional workstation clusters. NWChem software can handle: biomolecules, nanostructures, and solid-state; from quantum to classical, and all combinations; Gaussian basis functions or plane-waves; scaling from one to thousands of processors; properties and relativity. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``6.6.revision27746`` | ``-2015-10-20-patches-20170814-Python-2.7.13`` | ``intel/2017a`` -``6.6.revision27746`` | ``-2015-10-20-Python-2.7.12`` | ``iomkl/2017a`` -``6.8.revision47`` | ``-2017-12-14-Python-2.7.14`` | ``intel/2017b`` -``6.8.revision47`` | ``-2017-12-14-Python-2.7.14`` | ``intel/2018a`` -``7.0.0`` | ``-Python-3.7.4`` | ``intel/2019b`` -``7.0.2`` | ``-Python-3.7.4`` | ``intel/2019b`` -``7.0.2`` | | ``intel/2021a`` -``7.0.2`` | | ``intel/2022a`` -``7.2.2`` | | ``intel/2023a`` +version | toolchain +--------|---------- +``7.0.2`` | ``intel/2021a`` +``7.0.2`` | ``intel/2022a`` +``7.2.2`` | ``intel/2023a`` +``7.2.3`` | ``intel/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NanoComp.md b/docs/version-specific/supported-software/n/NanoComp.md index a09d0c970b..01a6b495ba 100644 --- a/docs/version-specific/supported-software/n/NanoComp.md +++ b/docs/version-specific/supported-software/n/NanoComp.md @@ -8,11 +8,10 @@ Comparing runs of Oxford Nanopore sequencing data and alignments *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.10.1`` | ``-Python-3.7.4`` | ``intel/2019b`` -``1.13.1`` | | ``intel/2020b`` -``1.24.0`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``1.13.1`` | ``intel/2020b`` +``1.24.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NanoFilt.md b/docs/version-specific/supported-software/n/NanoFilt.md index 94185348ec..2f568448aa 100644 --- a/docs/version-specific/supported-software/n/NanoFilt.md +++ b/docs/version-specific/supported-software/n/NanoFilt.md @@ -8,14 +8,11 @@ Filtering and trimming of long read sequencing data. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.5.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``2.6.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``2.6.0`` | ``-Python-3.7.4`` | ``intel/2019b`` -``2.6.0`` | ``-Python-3.8.2`` | ``intel/2020a`` -``2.8.0`` | | ``foss/2021b`` -``2.8.0`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``2.8.0`` | ``foss/2021b`` +``2.8.0`` | ``foss/2023a`` +``2.8.0`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/bc.md b/docs/version-specific/supported-software/n/NanoPack.md similarity index 82% rename from docs/version-specific/supported-software/b/bc.md rename to docs/version-specific/supported-software/n/NanoPack.md index e0b87c378a..55a22a3fa6 100644 --- a/docs/version-specific/supported-software/b/bc.md +++ b/docs/version-specific/supported-software/n/NanoPack.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# bc +# NanoPack -bc is an arbitrary precision numeric processing language. +Collection of long read processing and analysis tools. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.06.95`` | ``GCC/4.8.2`` +``20230602`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NanoPlot.md b/docs/version-specific/supported-software/n/NanoPlot.md index 33dabb626e..cc3d9eee3d 100644 --- a/docs/version-specific/supported-software/n/NanoPlot.md +++ b/docs/version-specific/supported-software/n/NanoPlot.md @@ -8,13 +8,12 @@ Plotting suite for long read sequencing data and alignments *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.28.4`` | ``-Python-3.7.4`` | ``intel/2019b`` -``1.33.0`` | | ``foss/2021a`` -``1.33.0`` | | ``intel/2020b`` -``1.42.0`` | | ``foss/2022a`` -``1.43.0`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``1.33.0`` | ``foss/2021a`` +``1.33.0`` | ``intel/2020b`` +``1.42.0`` | ``foss/2022a`` +``1.43.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NanopolishComp.md b/docs/version-specific/supported-software/n/NanopolishComp.md deleted file mode 100644 index 71acbea06d..0000000000 --- a/docs/version-specific/supported-software/n/NanopolishComp.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# NanopolishComp - -NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.6.11`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/Nek5000.md b/docs/version-specific/supported-software/n/Nek5000.md deleted file mode 100644 index 0025a5f027..0000000000 --- a/docs/version-specific/supported-software/n/Nek5000.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Nek5000 - -a fast and scalable high-order solver for computational fluid dynamics - -*homepage*: - -version | toolchain ---------|---------- -``17.0`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/Net-core.md b/docs/version-specific/supported-software/n/Net-core.md deleted file mode 100644 index 2028f88059..0000000000 --- a/docs/version-specific/supported-software/n/Net-core.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Net-core - -.NET Core is a free and open-source managed computer software framework for the Windows, Linux, and macOS operating systems .NET Core fully supports C# and F# and partially supports Visual Basic - -*homepage*: - -version | toolchain ---------|---------- -``2.1.8`` | ``system`` -``2.2.5`` | ``system`` -``3.0.0`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/NetLogo.md b/docs/version-specific/supported-software/n/NetLogo.md index e93141506c..a9f855bfd2 100644 --- a/docs/version-specific/supported-software/n/NetLogo.md +++ b/docs/version-specific/supported-software/n/NetLogo.md @@ -6,12 +6,10 @@ search: NetLogo is a multi-agent programmable modeling environment. It is used by tens of thousands of students, teachers and researchers worldwide. It also powers HubNet participatory simulations. It is authored by Uri Wilensky and developed at the CCL. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``5.3.1`` | ``-64`` | ``system`` -``6.0.4`` | ``-64`` | ``system`` ``6.2.0`` | ``-64`` | ``system`` ``6.2.2`` | ``-64`` | ``system`` ``6.3.0`` | ``-64`` | ``system`` diff --git a/docs/version-specific/supported-software/n/NetPIPE.md b/docs/version-specific/supported-software/n/NetPIPE.md index 3870403a2a..c092abf142 100644 --- a/docs/version-specific/supported-software/n/NetPIPE.md +++ b/docs/version-specific/supported-software/n/NetPIPE.md @@ -6,11 +6,10 @@ search: NetPIPE is a protocol independent communication performance benchmark that visually represents the network performance under a variety of conditions. -*homepage*: +*homepage*: version | toolchain --------|---------- -``5.1`` | ``intel/2018a`` ``5.1.4`` | ``gompi/2020b`` ``5.1.4`` | ``iimpi/2020b`` diff --git a/docs/version-specific/supported-software/n/NeuroKit.md b/docs/version-specific/supported-software/n/NeuroKit.md deleted file mode 100644 index eb852498c7..0000000000 --- a/docs/version-specific/supported-software/n/NeuroKit.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# NeuroKit - -NeuroKit is a Python module that provides high-level integrative functions with good and flexible defaults, allowing users to focus on what’s important. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.2.7`` | ``-Python-3.6.4`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/NextDenovo.md b/docs/version-specific/supported-software/n/NextDenovo.md new file mode 100644 index 0000000000..f025a474c5 --- /dev/null +++ b/docs/version-specific/supported-software/n/NextDenovo.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# NextDenovo + +NextDenovo is a string graph-based de novo assembler for long reads. + +*homepage*: + +version | toolchain +--------|---------- +``2.5.2-20240510`` | ``GCCcore/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/n/NextGenMap.md b/docs/version-specific/supported-software/n/NextGenMap.md index ff929e59c7..9b1455988a 100644 --- a/docs/version-specific/supported-software/n/NextGenMap.md +++ b/docs/version-specific/supported-software/n/NextGenMap.md @@ -11,7 +11,7 @@ NextGenMap is a flexible highly sensitive short read mapping tool that handles version | toolchain --------|---------- ``0.5.5`` | ``GCC/11.2.0`` -``0.5.5`` | ``foss/2016b`` +``0.5.5`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NextPolish.md b/docs/version-specific/supported-software/n/NextPolish.md index f6546f6409..c72181882c 100644 --- a/docs/version-specific/supported-software/n/NextPolish.md +++ b/docs/version-specific/supported-software/n/NextPolish.md @@ -10,7 +10,7 @@ NextDenovo is a string graph-based de novo assembler for long reads. version | toolchain --------|---------- -``1.4.1`` | ``GCCcore/12.3.0`` +``1.4.1`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/Nextflow.md b/docs/version-specific/supported-software/n/Nextflow.md index e4329ade98..aeb165a28d 100644 --- a/docs/version-specific/supported-software/n/Nextflow.md +++ b/docs/version-specific/supported-software/n/Nextflow.md @@ -4,14 +4,12 @@ search: --- # Nextflow -Nextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data +Nextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data *homepage*: version | toolchain --------|---------- -``19.04.0`` | ``system`` -``19.07.0`` | ``system`` ``19.12.0`` | ``system`` ``20.01.0`` | ``system`` ``20.04.1`` | ``system`` @@ -27,6 +25,8 @@ version | toolchain ``23.04.2`` | ``system`` ``23.10.0`` | ``system`` ``24.04.2`` | ``system`` +``24.04.4`` | ``system`` +``24.10.2`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NiBabel.md b/docs/version-specific/supported-software/n/NiBabel.md index f66c809996..b70ee6770d 100644 --- a/docs/version-specific/supported-software/n/NiBabel.md +++ b/docs/version-specific/supported-software/n/NiBabel.md @@ -8,30 +8,16 @@ NiBabel provides read/write access to some common medical and neuroimaging file *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0.2`` | ``-Python-2.7.11-freetype-2.6.3`` | ``intel/2016a`` -``2.0.2`` | ``-Python-2.7.11`` | ``intel/2016a`` -``2.1.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``2.2.1`` | ``-Python-3.6.4`` | ``intel/2018a`` -``2.3.0`` | ``-Python-2.7.14`` | ``foss/2017b`` -``2.3.0`` | ``-Python-3.6.3`` | ``foss/2017b`` -``2.3.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``2.3.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.3.0`` | ``-Python-3.6.3`` | ``intel/2017b`` -``2.4.0`` | | ``foss/2019a`` -``2.4.0`` | | ``intel/2019a`` -``2.5.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``3.1.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``3.1.0`` | ``-Python-3.7.4`` | ``intel/2019b`` -``3.2.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``3.2.1`` | | ``foss/2020b`` -``3.2.1`` | | ``foss/2021a`` -``3.2.1`` | | ``fosscuda/2020b`` -``3.2.2`` | | ``foss/2021b`` -``4.0.2`` | | ``foss/2022a`` -``5.2.0`` | | ``gfbf/2022b`` -``5.2.0`` | | ``gfbf/2023a`` +version | toolchain +--------|---------- +``3.2.1`` | ``foss/2020b`` +``3.2.1`` | ``foss/2021a`` +``3.2.1`` | ``fosscuda/2020b`` +``3.2.2`` | ``foss/2021b`` +``4.0.2`` | ``foss/2022a`` +``5.2.0`` | ``gfbf/2022b`` +``5.2.0`` | ``gfbf/2023a`` +``5.3.2`` | ``gfbf/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/Nilearn.md b/docs/version-specific/supported-software/n/Nilearn.md index 17aa290bea..5c824c2acd 100644 --- a/docs/version-specific/supported-software/n/Nilearn.md +++ b/docs/version-specific/supported-software/n/Nilearn.md @@ -8,17 +8,10 @@ Nilearn is a Python module for fast and easy statistical learning on NeuroImagin *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.3`` | | ``gfbf/2023a`` -``0.5.2`` | ``-Python-2.7.14`` | ``foss/2017b`` -``0.5.2`` | ``-Python-3.6.3`` | ``foss/2017b`` -``0.5.2`` | | ``foss/2019a`` -``0.5.2`` | ``-Python-2.7.14`` | ``intel/2017b`` -``0.5.2`` | ``-Python-3.6.3`` | ``intel/2017b`` -``0.5.2`` | | ``intel/2019a`` -``0.7.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``0.7.1`` | | ``foss/2020b`` +version | toolchain +--------|---------- +``0.10.3`` | ``gfbf/2023a`` +``0.7.1`` | ``foss/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/Nim.md b/docs/version-specific/supported-software/n/Nim.md index c8e187e159..9446169a37 100644 --- a/docs/version-specific/supported-software/n/Nim.md +++ b/docs/version-specific/supported-software/n/Nim.md @@ -10,12 +10,10 @@ Nim is a systems and applications programming language. version | toolchain --------|---------- -``0.18.0`` | ``GCCcore/6.4.0`` -``0.19.2`` | ``GCCcore/7.3.0`` -``1.0.0`` | ``GCCcore/8.3.0`` ``1.4.6`` | ``GCCcore/10.2.0`` ``1.4.8`` | ``GCCcore/10.3.0`` ``1.6.6`` | ``GCCcore/11.2.0`` +``2.2.0`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/Ninja.md b/docs/version-specific/supported-software/n/Ninja.md index cb3ce3e70a..e7d5eb42d8 100644 --- a/docs/version-specific/supported-software/n/Ninja.md +++ b/docs/version-specific/supported-software/n/Ninja.md @@ -10,7 +10,6 @@ Ninja is a small build system with a focus on speed. version | toolchain --------|---------- -``1.10.0`` | ``GCCcore/9.3.0`` ``1.10.1`` | ``GCCcore/10.2.0`` ``1.10.2`` | ``GCCcore/10.3.0`` ``1.10.2`` | ``GCCcore/11.2.0`` @@ -19,14 +18,7 @@ version | toolchain ``1.11.1`` | ``GCCcore/12.3.0`` ``1.11.1`` | ``GCCcore/13.2.0`` ``1.12.1`` | ``GCCcore/13.3.0`` -``1.8.2`` | ``foss/2018a`` -``1.8.2`` | ``foss/2018b`` -``1.8.2`` | ``fosscuda/2018b`` -``1.8.2`` | ``intel/2017b`` -``1.8.2`` | ``intel/2018a`` -``1.9.0`` | ``GCCcore/8.2.0`` -``1.9.0`` | ``GCCcore/8.3.0`` -``1.9.0`` | ``foss/2018b`` +``1.12.1`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/Nipype.md b/docs/version-specific/supported-software/n/Nipype.md index 83298ab5a6..f13d62c9df 100644 --- a/docs/version-specific/supported-software/n/Nipype.md +++ b/docs/version-specific/supported-software/n/Nipype.md @@ -6,15 +6,12 @@ search: Nipype is a Python project that provides a uniform interface to existing neuroimaging software and facilitates interaction between these packages within a single workflow. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.2`` | ``-Python-3.6.4`` | ``intel/2018a`` -``1.1.3`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.4.2`` | ``-Python-3.7.4`` | ``intel/2019b`` -``1.6.0`` | | ``foss/2020b`` -``1.8.5`` | | ``foss/2021a`` +version | toolchain +--------|---------- +``1.6.0`` | ``foss/2020b`` +``1.8.5`` | ``foss/2021a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/Node-RED.md b/docs/version-specific/supported-software/n/Node-RED.md deleted file mode 100644 index cbf10efb6a..0000000000 --- a/docs/version-specific/supported-software/n/Node-RED.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Node-RED - -Node-RED is a programming tool for wiring together hardware devices, APIs and online services in new and interesting ways. - -*homepage*: - -version | toolchain ---------|---------- -``0.16.2`` | ``foss/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/Normaliz.md b/docs/version-specific/supported-software/n/Normaliz.md index 38900e9aa2..3ee40afcfd 100644 --- a/docs/version-specific/supported-software/n/Normaliz.md +++ b/docs/version-specific/supported-software/n/Normaliz.md @@ -12,9 +12,6 @@ version | toolchain --------|---------- ``3.10.1`` | ``gfbf/2022a`` ``3.10.3`` | ``gfbf/2023b`` -``3.6.3`` | ``intel/2018b`` -``3.7.4`` | ``gompi/2019a`` -``3.8.4`` | ``GCC/8.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NxTrim.md b/docs/version-specific/supported-software/n/NxTrim.md deleted file mode 100644 index 89d6bcd134..0000000000 --- a/docs/version-specific/supported-software/n/NxTrim.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# NxTrim - -NxTrim is a software to remove Nextera Mate Pair junction adapters and categorise reads according to the orientation implied by the adapter location. - -*homepage*: - -version | toolchain ---------|---------- -``0.4.3`` | ``foss/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/index.md b/docs/version-specific/supported-software/n/index.md index c2288c7d38..818d12f1db 100644 --- a/docs/version-specific/supported-software/n/index.md +++ b/docs/version-specific/supported-software/n/index.md @@ -16,17 +16,15 @@ search: * [nano](nano.md) * [NanoCaller](NanoCaller.md) * [NanoComp](NanoComp.md) - * [nanocompore](nanocompore.md) * [NanoFilt](NanoFilt.md) * [nanoflann](nanoflann.md) * [nanoget](nanoget.md) * [NanoLyse](NanoLyse.md) * [nanomath](nanomath.md) * [nanomax-analysis-utils](nanomax-analysis-utils.md) - * [nanonet](nanonet.md) + * [NanoPack](NanoPack.md) * [NanoPlot](NanoPlot.md) * [nanopolish](nanopolish.md) - * [NanopolishComp](NanopolishComp.md) * [nanoQC](nanoQC.md) * [NanoStat](NanoStat.md) * [napari](napari.md) @@ -35,7 +33,6 @@ search: * [nauty](nauty.md) * [nbclassic](nbclassic.md) * [NBO](NBO.md) - * [NCBI-Toolkit](NCBI-Toolkit.md) * [ncbi-vdb](ncbi-vdb.md) * [NCCL](NCCL.md) * [NCCL-tests](NCCL-tests.md) @@ -45,43 +42,30 @@ search: * [NCL](NCL.md) * [NCO](NCO.md) * [ncolor](ncolor.md) - * [ncompress](ncompress.md) * [ncurses](ncurses.md) * [ncview](ncview.md) - * [nd2reader](nd2reader.md) - * [ne](ne.md) * [NECAT](NECAT.md) * [NECI](NECI.md) - * [NEdit](NEdit.md) - * [Nek5000](Nek5000.md) * [Nektar++](Nektar++.md) * [nellie](nellie.md) - * [neon](neon.md) * [neptune-client](neptune-client.md) - * [Net-core](Net-core.md) * [netCDF](netCDF.md) - * [netCDF-C++](netCDF-C++.md) * [netCDF-C++4](netCDF-C++4.md) * [netCDF-Fortran](netCDF-Fortran.md) * [netcdf4-python](netcdf4-python.md) - * [netloc](netloc.md) + * [netket](netket.md) * [NetLogo](NetLogo.md) - * [netMHC](netMHC.md) * [netMHCII](netMHCII.md) - * [netMHCIIpan](netMHCIIpan.md) - * [netMHCpan](netMHCpan.md) * [NetPIPE](NetPIPE.md) * [NetPyNE](NetPyNE.md) * [nettle](nettle.md) - * [networkTools](networkTools.md) * [networkx](networkx.md) - * [NeuroKit](NeuroKit.md) * [NEURON](NEURON.md) * [NewHybrids](NewHybrids.md) + * [NextDenovo](NextDenovo.md) * [Nextflow](Nextflow.md) * [NextGenMap](NextGenMap.md) * [NextPolish](NextPolish.md) - * [NEXUS-CL](NEXUS-CL.md) * [nf-core](nf-core.md) * [nf-core-mag](nf-core-mag.md) * [NFFT](NFFT.md) @@ -89,46 +73,33 @@ search: * [nghttp3](nghttp3.md) * [NGLess](NGLess.md) * [nglview](nglview.md) + * [ngmlr](ngmlr.md) * [NGS](NGS.md) - * [NGS-Python](NGS-Python.md) - * [NGSadmix](NGSadmix.md) * [NGSpeciesID](NGSpeciesID.md) * [ngspice](ngspice.md) * [ngtcp2](ngtcp2.md) * [NiBabel](NiBabel.md) * [nichenetr](nichenetr.md) - * [NIfTI](NIfTI.md) - * [nifti2dicom](nifti2dicom.md) * [nifty](nifty.md) * [Nilearn](Nilearn.md) * [Nim](Nim.md) - * [NIMBLE](NIMBLE.md) * [Ninja](Ninja.md) * [Nipype](Nipype.md) - * [NLMpy](NLMpy.md) * [nlohmann_json](nlohmann_json.md) * [NLopt](NLopt.md) * [NLTK](NLTK.md) * [nnU-Net](nnU-Net.md) - * [Node-RED](Node-RED.md) * [nodejs](nodejs.md) * [noise](noise.md) * [Normaliz](Normaliz.md) - * [nose-parameterized](nose-parameterized.md) * [nose3](nose3.md) * [novaSTA](novaSTA.md) - * [novoalign](novoalign.md) - * [NOVOPlasty](NOVOPlasty.md) - * [npstat](npstat.md) - * [NRGLjubljana](NRGLjubljana.md) * [Nsight-Compute](Nsight-Compute.md) * [Nsight-Systems](Nsight-Systems.md) * [NSPR](NSPR.md) * [NSS](NSS.md) * [nsync](nsync.md) * [ntCard](ntCard.md) - * [ntEdit](ntEdit.md) - * [ntHits](ntHits.md) * [NTL](NTL.md) * [NTPoly](NTPoly.md) * [num2words](num2words.md) @@ -137,6 +108,7 @@ search: * [numdiff](numdiff.md) * [numexpr](numexpr.md) * [numpy](numpy.md) + * [numpydoc](numpydoc.md) * [NVHPC](NVHPC.md) * [nvitop](nvitop.md) * [nvofbf](nvofbf.md) @@ -144,7 +116,6 @@ search: * [NVSHMEM](NVSHMEM.md) * [nvtop](nvtop.md) * [NWChem](NWChem.md) - * [NxTrim](NxTrim.md) *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - *n* - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/n2v.md b/docs/version-specific/supported-software/n/n2v.md index b2d341bef0..55e6e68b65 100644 --- a/docs/version-specific/supported-software/n/n2v.md +++ b/docs/version-specific/supported-software/n/n2v.md @@ -4,7 +4,7 @@ search: --- # n2v -Noise2Void - Learning Denoising from Single Noisy Images The field of image denoising is currently dominated by discriminative deep learning methods that are trained on pairs of noisy input and clean target images. Recently it has been shown that such methods can also be trained without clean targets. Instead, independent pairs of noisy images can be used, in an approach known as NOISE2NOISE (N2N). Here, we introduce NOISE2VOID (N2V), a training scheme that takes this idea one step further. It does not require noisy image pairs, nor clean target images. Consequently, N2V allows us to train directly on the body of data to be denoised and can therefore be applied when other methods cannot. Especially interesting is the application to biomedical image data, where the acquisition of training targets, clean or noisy, is frequently not possible. We compare the performance of N2V to approaches that have either clean target images and/or noisy image pairs available. Intuitively, N2V cannot be expected to outperform methods that have more information available during training. Still, we observe that the denoising performance of NOISE2VOID drops in moderation and compares favorably to training-free denoising methods. +Noise2Void - Learning Denoising from Single Noisy Images The field of image denoising is currently dominated by discriminative deep learning methods that are trained on pairs of noisy input and clean target images. Recently it has been shown that such methods can also be trained without clean targets. Instead, independent pairs of noisy images can be used, in an approach known as NOISE2NOISE (N2N). Here, we introduce NOISE2VOID (N2V), a training scheme that takes this idea one step further. It does not require noisy image pairs, nor clean target images. Consequently, N2V allows us to train directly on the body of data to be denoised and can therefore be applied when other methods cannot. Especially interesting is the application to biomedical image data, where the acquisition of training targets, clean or noisy, is frequently not possible. We compare the performance of N2V to approaches that have either clean target images and/or noisy image pairs available. Intuitively, N2V cannot be expected to outperform methods that have more information available during training. Still, we observe that the denoising performance of NOISE2VOID drops in moderation and compares favorably to training-free denoising methods. *homepage*: diff --git a/docs/version-specific/supported-software/n/nanocompore.md b/docs/version-specific/supported-software/n/nanocompore.md deleted file mode 100644 index 25033684c3..0000000000 --- a/docs/version-specific/supported-software/n/nanocompore.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# nanocompore - -Nanocompore identifies differences in ONT nanopore sequencing raw signal corresponding to RNA modifications by comparing 2 samples - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.0rc3-2`` | ``-Python-3.8.2`` | ``intel/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/nanoget.md b/docs/version-specific/supported-software/n/nanoget.md index 70d51bbb5c..7278a08c59 100644 --- a/docs/version-specific/supported-software/n/nanoget.md +++ b/docs/version-specific/supported-software/n/nanoget.md @@ -8,15 +8,14 @@ Functions to extract information from Oxford Nanopore sequencing data and alignm *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.12.1`` | ``-Python-3.7.4`` | ``intel/2019b`` -``1.15.0`` | | ``intel/2020b`` -``1.18.1`` | | ``foss/2021a`` -``1.18.1`` | | ``foss/2022a`` -``1.18.1`` | | ``foss/2022b`` -``1.19.1`` | | ``foss/2022a`` -``1.19.3`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``1.15.0`` | ``intel/2020b`` +``1.18.1`` | ``foss/2021a`` +``1.18.1`` | ``foss/2022a`` +``1.18.1`` | ``foss/2022b`` +``1.19.1`` | ``foss/2022a`` +``1.19.3`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/nanomath.md b/docs/version-specific/supported-software/n/nanomath.md index bf73cceac4..4348067500 100644 --- a/docs/version-specific/supported-software/n/nanomath.md +++ b/docs/version-specific/supported-software/n/nanomath.md @@ -8,14 +8,13 @@ A few simple math function for other Oxford Nanopore processing scripts *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.23.1`` | ``-Python-3.7.4`` | ``intel/2019b`` -``1.2.0`` | | ``intel/2020b`` -``1.2.1`` | | ``foss/2021a`` -``1.3.0`` | | ``foss/2022a`` -``1.3.0`` | | ``foss/2022b`` -``1.4.0`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``1.2.0`` | ``intel/2020b`` +``1.2.1`` | ``foss/2021a`` +``1.3.0`` | ``foss/2022a`` +``1.3.0`` | ``foss/2022b`` +``1.4.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/nanomax-analysis-utils.md b/docs/version-specific/supported-software/n/nanomax-analysis-utils.md index 13c7a37241..892c383f41 100644 --- a/docs/version-specific/supported-software/n/nanomax-analysis-utils.md +++ b/docs/version-specific/supported-software/n/nanomax-analysis-utils.md @@ -8,13 +8,11 @@ A set of tools for handling and analysing data at the NanoMAX beamline. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.4`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.4`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``0.4.3`` | | ``foss/2020b`` -``0.4.3`` | | ``fosscuda/2020b`` -``0.4.4`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``0.4.3`` | ``foss/2020b`` +``0.4.3`` | ``fosscuda/2020b`` +``0.4.4`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/nanonet.md b/docs/version-specific/supported-software/n/nanonet.md deleted file mode 100644 index 0ae65e9913..0000000000 --- a/docs/version-specific/supported-software/n/nanonet.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# nanonet - -Nanonet provides recurrent neural network basecalling for Oxford Nanopore MinION data. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0.0`` | ``-Python-2.7.13`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/nanopolish.md b/docs/version-specific/supported-software/n/nanopolish.md index fac499afff..f2e56d0547 100644 --- a/docs/version-specific/supported-software/n/nanopolish.md +++ b/docs/version-specific/supported-software/n/nanopolish.md @@ -8,16 +8,11 @@ Software package for signal-level analysis of Oxford Nanopore sequencing data. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.2`` | ``-Python-2.7.15`` | ``foss/2018b`` -``0.10.2`` | ``-Python-2.7.15`` | ``intel/2018b`` -``0.13.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.13.2`` | ``-Python-3.8.2`` | ``foss/2020a`` -``0.13.3`` | | ``foss/2020b`` -``0.14.0`` | | ``foss/2022a`` -``0.14.0`` | | ``foss/2023a`` -``0.9.2`` | | ``intel/2018a`` +version | toolchain +--------|---------- +``0.13.3`` | ``foss/2020b`` +``0.14.0`` | ``foss/2022a`` +``0.14.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/napari.md b/docs/version-specific/supported-software/n/napari.md index 9c1392d09d..9ed86821ca 100644 --- a/docs/version-specific/supported-software/n/napari.md +++ b/docs/version-specific/supported-software/n/napari.md @@ -4,7 +4,7 @@ search: --- # napari -napari is a fast, interactive, multi-dimensional image viewer for Python. It's designed for browsing, annotating, and analyzing large multi-dimensional images. It's built on top of Qt (for the GUI), vispy (for performant GPU-based rendering), and the scientific Python stack (numpy, scipy). +napari is a fast, interactive, multi-dimensional image viewer for Python. It's designed for browsing, annotating, and analyzing large multi-dimensional images. It's built on top of Qt (for the GUI), vispy (for performant GPU-based rendering), and the scientific Python stack (numpy, scipy). *homepage*: diff --git a/docs/version-specific/supported-software/n/nauty.md b/docs/version-specific/supported-software/n/nauty.md index ab776e3c47..ce1100dc58 100644 --- a/docs/version-specific/supported-software/n/nauty.md +++ b/docs/version-specific/supported-software/n/nauty.md @@ -6,13 +6,10 @@ search: nauty and Traces are programs for computing automorphism groups of graphs and digraphs. They can also produce a canonical label. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.6r12`` | ``GCC/8.2.0-2.31.1`` -``2.7rc2`` | ``GCC/8.2.0-2.31.1`` -``2.7rc5`` | ``GCC/8.3.0`` ``2.8.6`` | ``GCC/11.3.0`` ``2.8.8`` | ``GCC/13.2.0`` diff --git a/docs/version-specific/supported-software/n/ncbi-vdb.md b/docs/version-specific/supported-software/n/ncbi-vdb.md index ba78058081..62f771c5fb 100644 --- a/docs/version-specific/supported-software/n/ncbi-vdb.md +++ b/docs/version-specific/supported-software/n/ncbi-vdb.md @@ -10,20 +10,9 @@ The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for us version | toolchain --------|---------- -``2.10.4`` | ``gompi/2019b`` -``2.10.7`` | ``gompi/2020a`` ``2.10.9`` | ``gompi/2020b`` ``2.10.9`` | ``gompi/2021a`` ``2.11.2`` | ``gompi/2021b`` -``2.5.8-1`` | ``foss/2016b`` -``2.5.8-1`` | ``intel/2016a`` -``2.7.0`` | ``foss/2016b`` -``2.8.2`` | ``foss/2017b`` -``2.8.2`` | ``intel/2017a`` -``2.8.2`` | ``intel/2017b`` -``2.9.1-1`` | ``foss/2018a`` -``2.9.1-1`` | ``intel/2018a`` -``2.9.3`` | ``foss/2018b`` ``3.0.0`` | ``gompi/2021b`` ``3.0.0`` | ``gompi/2022a`` ``3.0.10`` | ``gompi/2023a`` @@ -31,6 +20,7 @@ version | toolchain ``3.0.5`` | ``gompi/2021a`` ``3.0.5`` | ``gompi/2022b`` ``3.1.1`` | ``gompi/2023b`` +``3.2.0`` | ``gompi/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/ncdf4.md b/docs/version-specific/supported-software/n/ncdf4.md index 7e86185590..5ad1179049 100644 --- a/docs/version-specific/supported-software/n/ncdf4.md +++ b/docs/version-specific/supported-software/n/ncdf4.md @@ -10,14 +10,6 @@ ncdf4: Interface to Unidata netCDF (version 4 or earlier) format data files version | versionsuffix | toolchain --------|---------------|---------- -``1.16`` | ``-R-3.4.0`` | ``intel/2017a`` -``1.16`` | ``-R-3.4.3`` | ``intel/2017b`` -``1.16`` | ``-R-3.4.4`` | ``intel/2018a`` -``1.16.1`` | ``-R-3.5.1`` | ``foss/2018b`` -``1.16.1`` | ``-R-3.6.0`` | ``foss/2019a`` -``1.16.1`` | ``-R-3.5.1`` | ``intel/2018b`` -``1.17`` | | ``foss/2019b`` -``1.17`` | ``-R-4.0.0`` | ``foss/2020a`` ``1.17`` | ``-R-4.0.3`` | ``foss/2020b`` ``1.17`` | ``-R-4.1.0`` | ``foss/2021a`` diff --git a/docs/version-specific/supported-software/n/ncdu.md b/docs/version-specific/supported-software/n/ncdu.md index cfa38ff82b..fe58434363 100644 --- a/docs/version-specific/supported-software/n/ncdu.md +++ b/docs/version-specific/supported-software/n/ncdu.md @@ -10,13 +10,11 @@ Ncdu is a disk usage analyzer with an ncurses interface. It is designed to find version | toolchain --------|---------- -``1.13`` | ``GCCcore/7.3.0`` -``1.14`` | ``GCCcore/7.3.0`` -``1.15.1`` | ``GCCcore/9.3.0`` ``1.16`` | ``GCC/10.3.0`` ``1.16`` | ``GCC/11.2.0`` ``1.17`` | ``GCC/11.3.0`` ``1.18`` | ``GCC/12.3.0`` +``1.20`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/ncompress.md b/docs/version-specific/supported-software/n/ncompress.md deleted file mode 100644 index 961658fab6..0000000000 --- a/docs/version-specific/supported-software/n/ncompress.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ncompress - -Compress is a fast, simple LZW file compressor. Compress does not have the highest compression rate, but it is one of the fastest programs to compress data. Compress is the defacto standard in the UNIX community for compressing files. - -*homepage*: - -version | toolchain ---------|---------- -``4.2.4.4`` | ``GCCcore/6.4.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/ncurses.md b/docs/version-specific/supported-software/n/ncurses.md index a25e1b8c66..8a47497ab2 100644 --- a/docs/version-specific/supported-software/n/ncurses.md +++ b/docs/version-specific/supported-software/n/ncurses.md @@ -4,49 +4,16 @@ search: --- # ncurses -The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses. +The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses. -*homepage*: +*homepage*: version | toolchain --------|---------- -``5.9`` | ``GCC/4.8.1`` -``5.9`` | ``GCC/4.8.2`` -``5.9`` | ``GCC/4.8.3`` -``5.9`` | ``GCC/4.8.4`` -``5.9`` | ``GCC/4.9.2`` -``5.9`` | ``GNU/4.9.3-2.25`` -``5.9`` | ``gimkl/2.11.5`` ``5.9`` | ``system`` -``6.0`` | ``GCC/4.9.3-2.25`` -``6.0`` | ``GCC/5.4.0-2.26`` -``6.0`` | ``GCCcore/4.9.3`` -``6.0`` | ``GCCcore/5.3.0`` -``6.0`` | ``GCCcore/5.4.0`` -``6.0`` | ``GCCcore/6.2.0`` -``6.0`` | ``GCCcore/6.3.0`` -``6.0`` | ``GCCcore/6.4.0`` -``6.0`` | ``GNU/4.9.3-2.25`` -``6.0`` | ``foss/2016.04`` -``6.0`` | ``foss/2016a`` -``6.0`` | ``foss/2016b`` -``6.0`` | ``gimkl/2017a`` -``6.0`` | ``intel/2016.02-GCC-4.9`` -``6.0`` | ``intel/2016a`` -``6.0`` | ``intel/2016b`` -``6.0`` | ``iomkl/2016.07`` -``6.0`` | ``iomkl/2016.09-GCC-4.9.3-2.25`` -``6.0`` | ``system`` -``6.1`` | ``GCCcore/6.4.0`` -``6.1`` | ``GCCcore/7.2.0`` -``6.1`` | ``GCCcore/7.3.0`` -``6.1`` | ``GCCcore/8.2.0`` -``6.1`` | ``GCCcore/8.3.0`` -``6.1`` | ``system`` ``6.2`` | ``GCCcore/10.2.0`` ``6.2`` | ``GCCcore/10.3.0`` ``6.2`` | ``GCCcore/11.2.0`` -``6.2`` | ``GCCcore/9.3.0`` ``6.2`` | ``system`` ``6.3`` | ``GCCcore/11.3.0`` ``6.3`` | ``GCCcore/12.1.0`` @@ -57,6 +24,7 @@ version | toolchain ``6.4`` | ``GCCcore/13.2.0`` ``6.4`` | ``system`` ``6.5`` | ``GCCcore/13.3.0`` +``6.5`` | ``GCCcore/14.2.0`` ``6.5`` | ``system`` diff --git a/docs/version-specific/supported-software/n/ncview.md b/docs/version-specific/supported-software/n/ncview.md index d3890e7a9d..9f48f38aa3 100644 --- a/docs/version-specific/supported-software/n/ncview.md +++ b/docs/version-specific/supported-software/n/ncview.md @@ -4,24 +4,13 @@ search: --- # ncview -Ncview is a visual browser for netCDF format files. Typically you would use ncview to get a quick and easy, push-button look at your netCDF files. You can view simple movies of the data, view along various dimensions, take a look at the actual data values, change color maps, invert the data, etc. +Ncview is a visual browser for netCDF format files. Typically you would use ncview to get a quick and easy, push-button look at your netCDF files. You can view simple movies of the data, view along various dimensions, take a look at the actual data values, change color maps, invert the data, etc. *homepage*: version | toolchain --------|---------- -``2.1.7`` | ``foss/2017b`` -``2.1.7`` | ``foss/2018b`` -``2.1.7`` | ``foss/2019b`` -``2.1.7`` | ``gompi/2019a`` -``2.1.7`` | ``intel/2016b`` -``2.1.7`` | ``intel/2017a`` -``2.1.7`` | ``intel/2017b`` -``2.1.7`` | ``intel/2018a`` -``2.1.7`` | ``intel/2018b`` -``2.1.7`` | ``intel/2019b`` -``2.1.7`` | ``iomkl/2018b`` -``2.1.8`` | ``gompi/2020a`` +``2.1.11`` | ``gompi/2024a`` ``2.1.8`` | ``gompi/2021a`` ``2.1.8`` | ``gompi/2021b`` ``2.1.8`` | ``gompi/2022a`` diff --git a/docs/version-specific/supported-software/n/nd2reader.md b/docs/version-specific/supported-software/n/nd2reader.md deleted file mode 100644 index 1095df8b52..0000000000 --- a/docs/version-specific/supported-software/n/nd2reader.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# nd2reader - -nd2reader is a pure-Python package that reads images produced by NIS Elements 4.0+. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0.6`` | ``-Python-2.7.14`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/ne.md b/docs/version-specific/supported-software/n/ne.md deleted file mode 100644 index d77ffe6387..0000000000 --- a/docs/version-specific/supported-software/n/ne.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ne - -ne is a free (GPL'd) text editor based on the POSIX standard that runs (we hope) on almost any UN*X machine. ne is easy to use for the beginner, but powerful and fully configurable for the wizard, and most sparing in its resource usage. - -*homepage*: - -version | toolchain ---------|---------- -``3.0.1`` | ``gimkl/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/nellie.md b/docs/version-specific/supported-software/n/nellie.md index 4af5df9dad..16698b1f69 100644 --- a/docs/version-specific/supported-software/n/nellie.md +++ b/docs/version-specific/supported-software/n/nellie.md @@ -4,7 +4,7 @@ search: --- # nellie -Napari plugin for automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy. +Napari plugin for automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy. *homepage*: diff --git a/docs/version-specific/supported-software/n/neon.md b/docs/version-specific/supported-software/n/neon.md deleted file mode 100644 index f323b7c062..0000000000 --- a/docs/version-specific/supported-software/n/neon.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# neon - -neon is an HTTP/1.1 and WebDAV client library, with a C interface. - -*homepage*: - -version | toolchain ---------|---------- -``0.31.2`` | ``GCCcore/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/neptune-client.md b/docs/version-specific/supported-software/n/neptune-client.md index 55d905b8b5..7e70b33809 100644 --- a/docs/version-specific/supported-software/n/neptune-client.md +++ b/docs/version-specific/supported-software/n/neptune-client.md @@ -8,12 +8,11 @@ Neptune is an experiment tracking hub that brings organization and collaboration *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.5`` | | ``foss/2020b`` -``0.16.2`` | | ``foss/2021a`` -``0.16.2`` | | ``foss/2022a`` -``0.4.129`` | ``-Python-3.8.2`` | ``foss/2020a`` +version | toolchain +--------|---------- +``0.10.5`` | ``foss/2020b`` +``0.16.2`` | ``foss/2021a`` +``0.16.2`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/netCDF-C++.md b/docs/version-specific/supported-software/n/netCDF-C++.md deleted file mode 100644 index 3aaf70ba4c..0000000000 --- a/docs/version-specific/supported-software/n/netCDF-C++.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# netCDF-C++ - -NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. - -*homepage*: - -version | toolchain ---------|---------- -``4.2`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/netCDF-C++4.md b/docs/version-specific/supported-software/n/netCDF-C++4.md index 6e09a73f4e..84999d4a32 100644 --- a/docs/version-specific/supported-software/n/netCDF-C++4.md +++ b/docs/version-specific/supported-software/n/netCDF-C++4.md @@ -4,38 +4,24 @@ search: --- # netCDF-C++4 -NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. +NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.3.0`` | | ``foss/2018b`` -``4.3.0`` | | ``gompi/2019a`` -``4.3.0`` | | ``iimpi/2019a`` -``4.3.0`` | | ``intel/2016a`` -``4.3.0`` | | ``intel/2016b`` -``4.3.0`` | ``-HDF5-1.8.18`` | ``intel/2017a`` -``4.3.0`` | | ``intel/2017a`` -``4.3.0`` | ``-HDF5-1.8.19`` | ``intel/2017b`` -``4.3.0`` | | ``intel/2018a`` -``4.3.0`` | | ``intel/2018b`` -``4.3.0`` | | ``iomkl/2018b`` -``4.3.1`` | | ``gompi/2019b`` -``4.3.1`` | | ``gompi/2020a`` -``4.3.1`` | | ``gompi/2020b`` -``4.3.1`` | | ``gompi/2021a`` -``4.3.1`` | | ``gompi/2021b`` -``4.3.1`` | | ``gompi/2022a`` -``4.3.1`` | | ``gompi/2023a`` -``4.3.1`` | | ``gompi/2023b`` -``4.3.1`` | | ``iimpi/2019b`` -``4.3.1`` | | ``iimpi/2020a`` -``4.3.1`` | | ``iimpi/2020b`` -``4.3.1`` | | ``iimpi/2021a`` -``4.3.1`` | | ``iimpi/2021b`` -``4.3.1`` | | ``iimpi/2022a`` -``4.3.1`` | | ``iimpi/2023b`` +version | toolchain +--------|---------- +``4.3.1`` | ``gompi/2020b`` +``4.3.1`` | ``gompi/2021a`` +``4.3.1`` | ``gompi/2021b`` +``4.3.1`` | ``gompi/2022a`` +``4.3.1`` | ``gompi/2023a`` +``4.3.1`` | ``gompi/2023b`` +``4.3.1`` | ``gompi/2024a`` +``4.3.1`` | ``iimpi/2020b`` +``4.3.1`` | ``iimpi/2021a`` +``4.3.1`` | ``iimpi/2021b`` +``4.3.1`` | ``iimpi/2022a`` +``4.3.1`` | ``iimpi/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/netCDF-Fortran.md b/docs/version-specific/supported-software/n/netCDF-Fortran.md index e20b10e7d4..98b2fdbb26 100644 --- a/docs/version-specific/supported-software/n/netCDF-Fortran.md +++ b/docs/version-specific/supported-software/n/netCDF-Fortran.md @@ -4,60 +4,27 @@ search: --- # netCDF-Fortran -NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. +NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.4.1`` | | ``foss/2016b`` -``4.4.1`` | | ``intel/2016b`` -``4.4.2`` | | ``intel/2016.02-GCC-4.9`` -``4.4.3`` | | ``foss/2016a`` -``4.4.3`` | | ``intel/2016a`` -``4.4.4`` | | ``PGI/18.4-GCC-6.4.0-2.28`` -``4.4.4`` | | ``foss/2016b`` -``4.4.4`` | ``-HDF5-1.8.19`` | ``foss/2017b`` -``4.4.4`` | | ``foss/2017b`` -``4.4.4`` | | ``foss/2018a`` -``4.4.4`` | | ``foss/2018b`` -``4.4.4`` | | ``fosscuda/2017b`` -``4.4.4`` | | ``fosscuda/2018b`` -``4.4.4`` | | ``intel/2016a`` -``4.4.4`` | | ``intel/2016b`` -``4.4.4`` | ``-HDF5-1.8.18`` | ``intel/2017a`` -``4.4.4`` | | ``intel/2017a`` -``4.4.4`` | ``-HDF5-1.8.19`` | ``intel/2017b`` -``4.4.4`` | | ``intel/2017b`` -``4.4.4`` | | ``intel/2018a`` -``4.4.4`` | | ``intel/2018b`` -``4.4.4`` | | ``intelcuda/2017b`` -``4.4.4`` | | ``iomkl/2016.07`` -``4.4.4`` | | ``iomkl/2016.09-GCC-4.9.3-2.25`` -``4.4.4`` | | ``iomkl/2018b`` -``4.4.5`` | | ``gompi/2019a`` -``4.4.5`` | | ``iimpi/2019a`` -``4.5.2`` | | ``gompi/2019b`` -``4.5.2`` | | ``gompi/2020a`` -``4.5.2`` | | ``gompic/2019b`` -``4.5.2`` | | ``gompic/2020a`` -``4.5.2`` | | ``iimpi/2019b`` -``4.5.2`` | | ``iimpi/2020a`` -``4.5.2`` | | ``iimpic/2019b`` -``4.5.3`` | | ``gompi/2020b`` -``4.5.3`` | | ``gompi/2021a`` -``4.5.3`` | | ``gompi/2021b`` -``4.5.3`` | | ``gompic/2020b`` -``4.5.3`` | | ``iimpi/2020b`` -``4.5.3`` | | ``iimpi/2021a`` -``4.5.3`` | | ``iimpi/2021b`` -``4.6.0`` | | ``gompi/2022a`` -``4.6.0`` | | ``gompi/2022b`` -``4.6.0`` | | ``iimpi/2022a`` -``4.6.1`` | | ``gompi/2023a`` -``4.6.1`` | | ``gompi/2023b`` -``4.6.1`` | | ``iimpi/2023a`` -``4.6.1`` | | ``iimpi/2023b`` +version | toolchain +--------|---------- +``4.5.3`` | ``gompi/2020b`` +``4.5.3`` | ``gompi/2021a`` +``4.5.3`` | ``gompi/2021b`` +``4.5.3`` | ``gompic/2020b`` +``4.5.3`` | ``iimpi/2020b`` +``4.5.3`` | ``iimpi/2021a`` +``4.5.3`` | ``iimpi/2021b`` +``4.6.0`` | ``gompi/2022a`` +``4.6.0`` | ``gompi/2022b`` +``4.6.0`` | ``iimpi/2022a`` +``4.6.1`` | ``gompi/2023a`` +``4.6.1`` | ``gompi/2023b`` +``4.6.1`` | ``gompi/2024a`` +``4.6.1`` | ``iimpi/2023a`` +``4.6.1`` | ``iimpi/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/netCDF.md b/docs/version-specific/supported-software/n/netCDF.md index de35516ff4..5c99e009d5 100644 --- a/docs/version-specific/supported-software/n/netCDF.md +++ b/docs/version-specific/supported-software/n/netCDF.md @@ -4,74 +4,29 @@ search: --- # netCDF -NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. +NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.3.3.1`` | | ``foss/2016a`` -``4.3.3.1`` | | ``intel/2016.02-GCC-4.9`` -``4.3.3.1`` | | ``intel/2016a`` -``4.4.0`` | | ``foss/2016a`` -``4.4.0`` | | ``intel/2016a`` -``4.4.0`` | | ``iomkl/2016.07`` -``4.4.0`` | | ``iomkl/2016.09-GCC-4.9.3-2.25`` -``4.4.1`` | | ``foss/2016a`` -``4.4.1`` | | ``foss/2016b`` -``4.4.1`` | | ``intel/2016a`` -``4.4.1`` | | ``intel/2016b`` -``4.4.1.1`` | | ``foss/2016b`` -``4.4.1.1`` | ``-HDF5-1.10.1`` | ``foss/2017a`` -``4.4.1.1`` | ``-HDF5-1.8.19`` | ``foss/2017a`` -``4.4.1.1`` | ``-HDF5-1.8.19`` | ``foss/2017b`` -``4.4.1.1`` | | ``foss/2017b`` -``4.4.1.1`` | | ``fosscuda/2017b`` -``4.4.1.1`` | | ``intel/2016b`` -``4.4.1.1`` | ``-HDF5-1.10.1`` | ``intel/2017a`` -``4.4.1.1`` | ``-HDF5-1.8.18`` | ``intel/2017a`` -``4.4.1.1`` | | ``intel/2017a`` -``4.4.1.1`` | ``-HDF5-1.8.19`` | ``intel/2017b`` -``4.4.1.1`` | | ``intel/2017b`` -``4.4.1.1`` | | ``intelcuda/2017b`` -``4.5.0`` | | ``foss/2017b`` -``4.5.0`` | | ``intel/2017b`` -``4.5.0`` | | ``intel/2018.00`` -``4.5.0`` | | ``intel/2018.01`` -``4.6.0`` | | ``foss/2018a`` -``4.6.0`` | | ``intel/2018a`` -``4.6.0`` | | ``iomkl/2018a`` -``4.6.1`` | | ``PGI/18.4-GCC-6.4.0-2.28`` -``4.6.1`` | | ``foss/2018b`` -``4.6.1`` | | ``fosscuda/2018b`` -``4.6.1`` | | ``intel/2018b`` -``4.6.1`` | | ``iomkl/2018b`` -``4.6.2`` | | ``gompi/2019a`` -``4.6.2`` | | ``iimpi/2019a`` -``4.7.1`` | | ``gompi/2019b`` -``4.7.1`` | | ``gompic/2019b`` -``4.7.1`` | | ``iimpi/2019b`` -``4.7.1`` | | ``iimpic/2019b`` -``4.7.4`` | | ``gompi/2020a`` -``4.7.4`` | | ``gompi/2020b`` -``4.7.4`` | | ``gompic/2020a`` -``4.7.4`` | | ``gompic/2020b`` -``4.7.4`` | | ``iimpi/2020a`` -``4.7.4`` | | ``iimpi/2020b`` -``4.7.4`` | | ``iimpic/2020b`` -``4.7.4`` | | ``iompi/2020a`` -``4.8.0`` | | ``gompi/2021a`` -``4.8.0`` | | ``iimpi/2021a`` -``4.8.1`` | | ``gompi/2021b`` -``4.8.1`` | | ``iimpi/2021b`` -``4.9.0`` | | ``gompi/2022a`` -``4.9.0`` | | ``gompi/2022b`` -``4.9.0`` | | ``iimpi/2022a`` -``4.9.0`` | | ``iimpi/2022b`` -``4.9.2`` | | ``gompi/2023a`` -``4.9.2`` | | ``gompi/2023b`` -``4.9.2`` | | ``iimpi/2023a`` -``4.9.2`` | | ``iimpi/2023b`` +version | toolchain +--------|---------- +``4.7.4`` | ``gompi/2020b`` +``4.7.4`` | ``gompic/2020b`` +``4.7.4`` | ``iimpi/2020b`` +``4.7.4`` | ``iimpic/2020b`` +``4.8.0`` | ``gompi/2021a`` +``4.8.0`` | ``iimpi/2021a`` +``4.8.1`` | ``gompi/2021b`` +``4.8.1`` | ``iimpi/2021b`` +``4.9.0`` | ``gompi/2022a`` +``4.9.0`` | ``gompi/2022b`` +``4.9.0`` | ``iimpi/2022a`` +``4.9.0`` | ``iimpi/2022b`` +``4.9.2`` | ``gompi/2023a`` +``4.9.2`` | ``gompi/2023b`` +``4.9.2`` | ``gompi/2024a`` +``4.9.2`` | ``iimpi/2023a`` +``4.9.2`` | ``iimpi/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/netMHC.md b/docs/version-specific/supported-software/n/netMHC.md deleted file mode 100644 index 0bea7f3b6e..0000000000 --- a/docs/version-specific/supported-software/n/netMHC.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# netMHC - -NetMHC 4.0 predicts binding of peptides to a number of different HLA alleles using artificial neural networks (ANN). - -*homepage*: - -version | toolchain ---------|---------- -``4.0a`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/netMHCII.md b/docs/version-specific/supported-software/n/netMHCII.md index 85f61578f6..c231ac1166 100644 --- a/docs/version-specific/supported-software/n/netMHCII.md +++ b/docs/version-specific/supported-software/n/netMHCII.md @@ -6,7 +6,7 @@ search: NetMHCII 2.3 server predicts binding of peptides to HLA-DR, HLA-DQ, HLA-DP and mouse MHC class II alleles using articial neuron networks. Predictions can be obtained for 25 HLA-DR alleles, 20 HLA-DQ, 9 HLA-DP, and 7 mouse H2 class II alleles. -*homepage*: +*homepage*: version | toolchain --------|---------- diff --git a/docs/version-specific/supported-software/n/netMHCIIpan.md b/docs/version-specific/supported-software/n/netMHCIIpan.md deleted file mode 100644 index 329d608528..0000000000 --- a/docs/version-specific/supported-software/n/netMHCIIpan.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# netMHCIIpan - -The NetMHCIIpan software predicts binding of peptides to MHC class II molecules. The predictions are available for the three human MHC class II isotypes HLA-DR, HLA-DP and HLA-DQ, as well as mouse molecules (H-2). - -*homepage*: - -version | toolchain ---------|---------- -``3.2`` | ``GCCcore/7.3.0`` -``3.2`` | ``GCCcore/8.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/netMHCpan.md b/docs/version-specific/supported-software/n/netMHCpan.md deleted file mode 100644 index f6eeefbd2a..0000000000 --- a/docs/version-specific/supported-software/n/netMHCpan.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# netMHCpan - -The NetMHCpan software predicts binding of peptides to any known MHC molecule using artificial neural networks (ANNs). - -*homepage*: - -version | toolchain ---------|---------- -``4.0a`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/netcdf4-python.md b/docs/version-specific/supported-software/n/netcdf4-python.md index a27443e743..2be2525640 100644 --- a/docs/version-specific/supported-software/n/netcdf4-python.md +++ b/docs/version-specific/supported-software/n/netcdf4-python.md @@ -8,35 +8,20 @@ Python/numpy interface to netCDF. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.9`` | ``-Python-2.7.13`` | ``intel/2017a`` -``1.3.1`` | ``-Python-3.6.3-HDF5-1.8.19`` | ``intel/2017b`` -``1.3.1`` | ``-Python-3.6.3`` | ``intel/2017b`` -``1.4.0`` | ``-Python-3.6.2-HDF5-1.8.19`` | ``foss/2017b`` -``1.4.0`` | ``-Python-3.6.4`` | ``intel/2018a`` -``1.4.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.4.1`` | ``-Python-2.7.15`` | ``intel/2018b`` -``1.4.1`` | ``-Python-3.6.6`` | ``intel/2018b`` -``1.4.2`` | ``-Python-3.6.4`` | ``foss/2018a`` -``1.4.3`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.5.2`` | | ``intel/2019a`` -``1.5.3`` | ``-Python-2.7.16`` | ``foss/2019b`` -``1.5.3`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.5.3`` | ``-Python-3.8.2`` | ``foss/2020a`` -``1.5.3`` | ``-Python-3.7.4`` | ``intel/2019b`` -``1.5.3`` | ``-Python-3.8.2`` | ``intel/2020a`` -``1.5.5.1`` | | ``foss/2020b`` -``1.5.5.1`` | | ``fosscuda/2020b`` -``1.5.5.1`` | | ``intel/2020b`` -``1.5.7`` | | ``foss/2021a`` -``1.5.7`` | | ``foss/2021b`` -``1.5.7`` | | ``intel/2021b`` -``1.6.1`` | | ``foss/2022a`` -``1.6.1`` | | ``intel/2022a`` -``1.6.3`` | | ``foss/2022b`` -``1.6.4`` | | ``foss/2023a`` -``1.6.5`` | | ``foss/2023b`` +version | toolchain +--------|---------- +``1.5.5.1`` | ``foss/2020b`` +``1.5.5.1`` | ``fosscuda/2020b`` +``1.5.5.1`` | ``intel/2020b`` +``1.5.7`` | ``foss/2021a`` +``1.5.7`` | ``foss/2021b`` +``1.5.7`` | ``intel/2021b`` +``1.6.1`` | ``foss/2022a`` +``1.6.1`` | ``intel/2022a`` +``1.6.3`` | ``foss/2022b`` +``1.6.4`` | ``foss/2023a`` +``1.6.5`` | ``foss/2023b`` +``1.7.1.post2`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/netket.md b/docs/version-specific/supported-software/n/netket.md new file mode 100644 index 0000000000..31bd661675 --- /dev/null +++ b/docs/version-specific/supported-software/n/netket.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# netket + +NetKet is a Python machine learning library for many-body quantum systems. + +*homepage*: + +version | toolchain +--------|---------- +``3.14.3`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/n/netloc.md b/docs/version-specific/supported-software/n/netloc.md deleted file mode 100644 index 4cec1cb0f5..0000000000 --- a/docs/version-specific/supported-software/n/netloc.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# netloc - -The Portable Network Locality (netloc) software package provides network topology discovery tools, and an abstract representation of those networks topologies for a range of network types and configurations. It is provided as a companion to the Portable Hardware Locality (hwloc) package. - -*homepage*: - -version | toolchain ---------|---------- -``0.5`` | ``GCC/4.8.3`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/nettle.md b/docs/version-specific/supported-software/n/nettle.md index 3b8e185c50..1120d27af1 100644 --- a/docs/version-specific/supported-software/n/nettle.md +++ b/docs/version-specific/supported-software/n/nettle.md @@ -6,32 +6,12 @@ search: Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space. -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.1.1`` | ``GNU/4.9.3-2.25`` -``3.1.1`` | ``foss/2016a`` -``3.1.1`` | ``intel/2016a`` ``3.10`` | ``GCCcore/13.3.0`` -``3.2`` | ``GCCcore/5.4.0`` -``3.2`` | ``foss/2016b`` -``3.2`` | ``intel/2016b`` -``3.3`` | ``GCCcore/6.3.0`` -``3.3`` | ``GCCcore/6.4.0`` -``3.3`` | ``intel/2017a`` -``3.4`` | ``GCCcore/6.4.0`` -``3.4`` | ``GCCcore/7.3.0`` -``3.4`` | ``foss/2018a`` -``3.4`` | ``foss/2018b`` -``3.4`` | ``fosscuda/2018b`` -``3.4`` | ``intel/2018a`` -``3.4`` | ``intel/2018b`` -``3.4`` | ``iomkl/2018a`` -``3.4.1`` | ``GCCcore/8.2.0`` -``3.5.1`` | ``GCCcore/8.3.0`` ``3.6`` | ``GCCcore/10.2.0`` -``3.6`` | ``GCCcore/9.3.0`` ``3.7.2`` | ``GCCcore/10.3.0`` ``3.7.3`` | ``GCCcore/11.2.0`` ``3.8`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/n/networkTools.md b/docs/version-specific/supported-software/n/networkTools.md deleted file mode 100644 index 18dcce3b37..0000000000 --- a/docs/version-specific/supported-software/n/networkTools.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# networkTools - -Dynamical Network Analysis is a method of characterizing allosteric signalling through biomolecular complexes. - -*homepage*: - -version | toolchain ---------|---------- -``2`` | ``GCC/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/networkx.md b/docs/version-specific/supported-software/n/networkx.md index c1b5a26b2f..b68c9c9170 100644 --- a/docs/version-specific/supported-software/n/networkx.md +++ b/docs/version-specific/supported-software/n/networkx.md @@ -4,50 +4,28 @@ search: --- # networkx -NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks. +NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.11`` | ``-Python-2.7.11`` | ``foss/2016a`` -``1.11`` | ``-Python-3.5.1`` | ``foss/2016a`` -``1.11`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.1`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.2`` | ``-Python-2.7.15`` | ``foss/2018b`` -``2.2`` | ``-Python-3.6.6`` | ``foss/2018b`` -``2.2`` | ``-Python-2.7.15`` | ``foss/2019a`` -``2.2`` | ``-Python-2.7.16`` | ``foss/2019b`` -``2.2`` | ``-Python-2.7.15`` | ``intel/2018b`` -``2.2`` | ``-Python-3.6.6`` | ``intel/2018b`` -``2.3`` | ``-Python-3.7.2`` | ``foss/2019a`` -``2.3`` | ``-Python-3.7.2`` | ``intel/2019a`` -``2.4`` | ``-Python-3.7.2`` | ``foss/2019a`` -``2.4`` | ``-Python-3.7.4`` | ``foss/2019b`` -``2.4`` | ``-Python-3.8.2`` | ``foss/2020a`` -``2.4`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``2.4`` | ``-Python-3.8.2`` | ``fosscuda/2020a`` -``2.4`` | ``-Python-3.7.2`` | ``intel/2019a`` -``2.4`` | ``-Python-3.7.4`` | ``intel/2019b`` -``2.4`` | ``-Python-3.8.2`` | ``intel/2020a`` -``2.4`` | ``-Python-3.7.4`` | ``intelcuda/2019b`` -``2.5`` | | ``foss/2020b`` -``2.5`` | | ``fosscuda/2020b`` -``2.5`` | | ``intel/2020b`` -``2.5`` | | ``intelcuda/2020b`` -``2.5.1`` | | ``foss/2021a`` -``2.6.2`` | | ``foss/2020b`` -``2.6.3`` | | ``foss/2021a`` -``2.6.3`` | | ``foss/2021b`` -``2.6.3`` | | ``intel/2021b`` -``2.8.4`` | | ``foss/2022a`` -``2.8.4`` | | ``intel/2022a`` -``2.8.8`` | | ``gfbf/2022b`` -``3.0`` | | ``gfbf/2022b`` -``3.1`` | | ``gfbf/2023a`` -``3.2.1`` | | ``gfbf/2023b`` +version | toolchain +--------|---------- +``2.5`` | ``foss/2020b`` +``2.5`` | ``fosscuda/2020b`` +``2.5`` | ``intel/2020b`` +``2.5`` | ``intelcuda/2020b`` +``2.5.1`` | ``foss/2021a`` +``2.6.2`` | ``foss/2020b`` +``2.6.3`` | ``foss/2021a`` +``2.6.3`` | ``foss/2021b`` +``2.6.3`` | ``intel/2021b`` +``2.8.4`` | ``foss/2022a`` +``2.8.4`` | ``intel/2022a`` +``2.8.8`` | ``gfbf/2022b`` +``3.0`` | ``gfbf/2022b`` +``3.1`` | ``gfbf/2023a`` +``3.2.1`` | ``gfbf/2023b`` +``3.4.2`` | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/nf-core.md b/docs/version-specific/supported-software/n/nf-core.md index 051ba35d6b..2632787955 100644 --- a/docs/version-specific/supported-software/n/nf-core.md +++ b/docs/version-specific/supported-software/n/nf-core.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``2.10`` | ``foss/2022b`` ``2.13.1`` | ``foss/2023b`` +``2.14.1`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/nghttp2.md b/docs/version-specific/supported-software/n/nghttp2.md index 1d11ffd9f6..55f214ee69 100644 --- a/docs/version-specific/supported-software/n/nghttp2.md +++ b/docs/version-specific/supported-software/n/nghttp2.md @@ -4,7 +4,7 @@ search: --- # nghttp2 -This is an implementation of the Hypertext Transfer Protocol version 2 in C. The framing layer of HTTP/2 is implemented as a reusable C library. On top of that, we have implemented an HTTP/2 client, server and proxy. We have also developed load test and benchmarking tools for HTTP/2. An HPACK encoder and decoder are available as a public API. +This is an implementation of the Hypertext Transfer Protocol version 2 in C. The framing layer of HTTP/2 is implemented as a reusable C library. On top of that, we have implemented an HTTP/2 client, server and proxy. We have also developed load test and benchmarking tools for HTTP/2. An HPACK encoder and decoder are available as a public API. *homepage*: diff --git a/docs/version-specific/supported-software/n/nghttp3.md b/docs/version-specific/supported-software/n/nghttp3.md index a78bae8041..ef48bb1c69 100644 --- a/docs/version-specific/supported-software/n/nghttp3.md +++ b/docs/version-specific/supported-software/n/nghttp3.md @@ -4,7 +4,7 @@ search: --- # nghttp3 -nghttp3 is an implementation of RFC 9114 HTTP/3 mapping over QUIC and RFC 9204 QPACK in C. It does not depend on any particular QUIC transport implementation. +nghttp3 is an implementation of RFC 9114 HTTP/3 mapping over QUIC and RFC 9204 QPACK in C. It does not depend on any particular QUIC transport implementation. *homepage*: diff --git a/docs/version-specific/supported-software/n/nglview.md b/docs/version-specific/supported-software/n/nglview.md index 38f8c340bd..2d7c6c2c02 100644 --- a/docs/version-specific/supported-software/n/nglview.md +++ b/docs/version-specific/supported-software/n/nglview.md @@ -8,13 +8,11 @@ IPython widget to interactively view molecular structures and trajectories. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.7.0`` | ``-Python-3.7.2`` | ``intel/2019a`` -``2.7.7`` | ``-Python-3.8.2`` | ``intel/2020a`` -``3.0.3`` | | ``foss/2021a`` -``3.0.3`` | | ``foss/2022a`` -``3.1.2`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``3.0.3`` | ``foss/2021a`` +``3.0.3`` | ``foss/2022a`` +``3.1.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/ngmlr.md b/docs/version-specific/supported-software/n/ngmlr.md new file mode 100644 index 0000000000..04a0ba3b8b --- /dev/null +++ b/docs/version-specific/supported-software/n/ngmlr.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# ngmlr + +Ngmlr is a long-read mapper designed to align PacBilo or Oxford Nanopore to a reference genome with a focus on reads that span structural variations. + +*homepage*: + +version | toolchain +--------|---------- +``0.2.7`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/n/ngspice.md b/docs/version-specific/supported-software/n/ngspice.md index 900576deb9..6d3209df4e 100644 --- a/docs/version-specific/supported-software/n/ngspice.md +++ b/docs/version-specific/supported-software/n/ngspice.md @@ -4,13 +4,12 @@ search: --- # ngspice -Ngspice is a mixed-level/mixed-signal circuit simulator. Its code is based on three open source software packages: Spice3f5, Cider1b1 and Xspice. +Ngspice is a mixed-level/mixed-signal circuit simulator. Its code is based on three open source software packages: Spice3f5, Cider1b1 and Xspice. *homepage*: version | toolchain --------|---------- -``31`` | ``foss/2019b`` ``39`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/n/nichenetr.md b/docs/version-specific/supported-software/n/nichenetr.md index 23c0a6e0b4..c314ca49a8 100644 --- a/docs/version-specific/supported-software/n/nichenetr.md +++ b/docs/version-specific/supported-software/n/nichenetr.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``1.1.1-20230223`` | ``-R-4.2.1`` | ``foss/2022a`` ``2.0.4`` | ``-R-4.2.2`` | ``foss/2022b`` +``2.2.0`` | ``-R-4.4.2`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/nifti2dicom.md b/docs/version-specific/supported-software/n/nifti2dicom.md deleted file mode 100644 index fb5bd71ee9..0000000000 --- a/docs/version-specific/supported-software/n/nifti2dicom.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# nifti2dicom - -Nifti2Dicom is a conversion tool that converts 3D NIfTI files (and other formats supported by ITK, including Analyze, MetaImage Nrrd and VTK) to DICOM. Unlike other conversion tools, it can import a DICOM file that is used to import the patient and study DICOM tags, and allows you to edit the accession number and other DICOM tags, in order to create a valid DICOM that can be imported in a PACS. - -*homepage*: - -version | toolchain ---------|---------- -``0.4.11`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/nifty.md b/docs/version-specific/supported-software/n/nifty.md index 0dcdab6228..91f71d2831 100644 --- a/docs/version-specific/supported-software/n/nifty.md +++ b/docs/version-specific/supported-software/n/nifty.md @@ -4,7 +4,7 @@ search: --- # nifty -A nifty library for 2D and 3D image segmentation, graph based segmentation an opt. This library provided building blocks for segmentation algorithms and complex segmentation pipelines. +A nifty library for 2D and 3D image segmentation, graph based segmentation an opt. This library provided building blocks for segmentation algorithms and complex segmentation pipelines. *homepage*: diff --git a/docs/version-specific/supported-software/n/nodejs.md b/docs/version-specific/supported-software/n/nodejs.md index 3bb5c28621..51dd6a0bdb 100644 --- a/docs/version-specific/supported-software/n/nodejs.md +++ b/docs/version-specific/supported-software/n/nodejs.md @@ -6,15 +6,10 @@ search: Node.js is a platform built on Chrome's JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices. -*homepage*: +*homepage*: version | toolchain --------|---------- -``10.15.1`` | ``foss/2018b`` -``10.15.3`` | ``GCCcore/8.2.0`` -``12.16.1`` | ``GCCcore/7.3.0`` -``12.16.1`` | ``GCCcore/8.3.0`` -``12.16.1`` | ``GCCcore/9.3.0`` ``12.19.0`` | ``GCCcore/10.2.0`` ``14.17.0`` | ``GCCcore/10.3.0`` ``14.17.2`` | ``GCCcore/10.3.0`` @@ -24,9 +19,6 @@ version | toolchain ``18.17.1`` | ``GCCcore/12.3.0`` ``20.13.1`` | ``GCCcore/13.3.0`` ``20.9.0`` | ``GCCcore/13.2.0`` -``4.4.7`` | ``foss/2016a`` -``6.10.3`` | ``foss/2017a`` -``8.9.4`` | ``foss/2017a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/nose-parameterized.md b/docs/version-specific/supported-software/n/nose-parameterized.md deleted file mode 100644 index 04e770f6bb..0000000000 --- a/docs/version-specific/supported-software/n/nose-parameterized.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# nose-parameterized - -Parameterized testing with any Python test framework. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.5.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``0.5.0`` | ``-Python-3.5.1`` | ``foss/2016a`` -``0.5.0`` | ``-Python-3.5.2`` | ``intel/2016b`` -``0.6.0`` | ``-Python-3.6.1`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/novaSTA.md b/docs/version-specific/supported-software/n/novaSTA.md index 36b620cc36..b6f8965279 100644 --- a/docs/version-specific/supported-software/n/novaSTA.md +++ b/docs/version-specific/supported-software/n/novaSTA.md @@ -4,7 +4,7 @@ search: --- # novaSTA -C++ version of subtomogram averaging (SA) scripts from TOM/AV3 package https://doi.org/10.1073/pnas.0409178102. Both CPU and GPU parallelization is supported although the latter performs significantly worse in terms of processing time (the code is not well optimized) and is thus not recommended for larger datasets. +C++ version of subtomogram averaging (SA) scripts from TOM/AV3 package https://doi.org/10.1073/pnas.0409178102. Both CPU and GPU parallelization is supported although the latter performs significantly worse in terms of processing time (the code is not well optimized) and is thus not recommended for larger datasets. *homepage*: diff --git a/docs/version-specific/supported-software/n/novoalign.md b/docs/version-specific/supported-software/n/novoalign.md deleted file mode 100644 index ea2f6caff6..0000000000 --- a/docs/version-specific/supported-software/n/novoalign.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# novoalign - -Map short reads onto a reference genome from Illumina, Ion Torrent, and 454 next generation sequencing platforms - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.09.00`` | | ``system`` -``3.09.01`` | ``-R-3.5.1`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/npstat.md b/docs/version-specific/supported-software/n/npstat.md deleted file mode 100644 index 285db7a733..0000000000 --- a/docs/version-specific/supported-software/n/npstat.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# npstat - -npstat implements some population genetics tests and estimators that can be applied to pooled sequences from Next Generation Sequencing experiments. - -*homepage*: - -version | toolchain ---------|---------- -``0.99`` | ``foss/2016a`` -``0.99`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/nsync.md b/docs/version-specific/supported-software/n/nsync.md index 2c01a8d9d9..9614261ca2 100644 --- a/docs/version-specific/supported-software/n/nsync.md +++ b/docs/version-specific/supported-software/n/nsync.md @@ -13,8 +13,6 @@ version | toolchain ``1.24.0`` | ``GCCcore/10.2.0`` ``1.24.0`` | ``GCCcore/10.3.0`` ``1.24.0`` | ``GCCcore/11.2.0`` -``1.24.0`` | ``GCCcore/8.3.0`` -``1.24.0`` | ``GCCcore/9.3.0`` ``1.25.0`` | ``GCCcore/11.3.0`` ``1.26.0`` | ``GCCcore/12.2.0`` ``1.26.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/n/ntCard.md b/docs/version-specific/supported-software/n/ntCard.md index 057bf3014c..38536dd976 100644 --- a/docs/version-specific/supported-software/n/ntCard.md +++ b/docs/version-specific/supported-software/n/ntCard.md @@ -11,7 +11,6 @@ ntCard is a streaming algorithm for estimating the frequencies of k-mers in geno version | toolchain --------|---------- ``1.2.1`` | ``GCC/11.2.0`` -``1.2.1`` | ``GCC/8.3.0`` ``1.2.2`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/n/ntEdit.md b/docs/version-specific/supported-software/n/ntEdit.md deleted file mode 100644 index 54a791412e..0000000000 --- a/docs/version-specific/supported-software/n/ntEdit.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ntEdit - -ntEdit is a fast and scalable genomics application for polishing genome assembly drafts. - -*homepage*: - -version | toolchain ---------|---------- -``1.3.1`` | ``iccifort/2018.3.222-GCC-7.3.0-2.30`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/ntHits.md b/docs/version-specific/supported-software/n/ntHits.md deleted file mode 100644 index cc241acc6f..0000000000 --- a/docs/version-specific/supported-software/n/ntHits.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ntHits - -ntHits is a method for identifying repeats in high-throughput DNA sequencing data. - -*homepage*: - -version | toolchain ---------|---------- -``0.0.1`` | ``iccifort/2018.3.222-GCC-7.3.0-2.30`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/numactl.md b/docs/version-specific/supported-software/n/numactl.md index f4ad2a8551..dd0e191383 100644 --- a/docs/version-specific/supported-software/n/numactl.md +++ b/docs/version-specific/supported-software/n/numactl.md @@ -4,42 +4,13 @@ search: --- # numactl -The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program. +The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.0.10`` | ``GCC/4.8.4`` -``2.0.10`` | ``GCC/4.9.2`` -``2.0.10`` | ``GNU/4.9.2-2.25`` -``2.0.10`` | ``GNU/4.9.3-2.25`` -``2.0.11`` | ``GCC/4.9.3-2.25`` -``2.0.11`` | ``GCC/4.9.3`` -``2.0.11`` | ``GCC/5.2.0`` -``2.0.11`` | ``GCC/5.3.0-2.26`` -``2.0.11`` | ``GCC/5.4.0-2.26`` -``2.0.11`` | ``GCC/6.1.0-2.27`` -``2.0.11`` | ``GCC/6.2.0-2.27`` -``2.0.11`` | ``GCC/6.3.0-2.27`` -``2.0.11`` | ``GCCcore/4.9.2`` -``2.0.11`` | ``GCCcore/4.9.3`` -``2.0.11`` | ``GCCcore/5.3.0`` -``2.0.11`` | ``GCCcore/5.4.0`` -``2.0.11`` | ``GCCcore/6.3.0`` -``2.0.11`` | ``GCCcore/6.4.0`` -``2.0.11`` | ``GCCcore/7.2.0`` -``2.0.11`` | ``GCCcore/7.3.0`` -``2.0.11`` | ``foss/2016a`` -``2.0.11`` | ``iccifort/2016.3.210-GCC-4.9.3-2.25`` -``2.0.11`` | ``iccifort/2016.3.210-GCC-5.4.0-2.26`` -``2.0.11`` | ``intel/2016a`` -``2.0.11`` | ``intel/2016b`` -``2.0.12`` | ``GCCcore/8.2.0`` -``2.0.12`` | ``GCCcore/8.3.0`` ``2.0.13`` | ``GCCcore/10.2.0`` -``2.0.13`` | ``GCCcore/9.2.0`` -``2.0.13`` | ``GCCcore/9.3.0`` ``2.0.14`` | ``GCCcore/10.3.0`` ``2.0.14`` | ``GCCcore/11.2.0`` ``2.0.14`` | ``GCCcore/11.3.0`` @@ -47,7 +18,7 @@ version | toolchain ``2.0.16`` | ``GCCcore/12.3.0`` ``2.0.16`` | ``GCCcore/13.2.0`` ``2.0.18`` | ``GCCcore/13.3.0`` -``2.0.9`` | ``GCC/4.8.3`` +``2.0.19`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/numba.md b/docs/version-specific/supported-software/n/numba.md index 27e79ff885..de51c42870 100644 --- a/docs/version-specific/supported-software/n/numba.md +++ b/docs/version-specific/supported-software/n/numba.md @@ -4,29 +4,12 @@ search: --- # numba -Numba is an Open Source NumPy-aware optimizing compiler for Python sponsored by Continuum Analytics, Inc. It uses the remarkable LLVM compiler infrastructure to compile Python syntax to machine code. +Numba is an Open Source NumPy-aware optimizing compiler for Python sponsored by Continuum Analytics, Inc. It uses the remarkable LLVM compiler infrastructure to compile Python syntax to machine code. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``0.24.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``0.24.0`` | ``-Python-3.5.1`` | ``intel/2016a`` -``0.26.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``0.32.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``0.37.0`` | ``-Python-2.7.14`` | ``foss/2018a`` -``0.37.0`` | ``-Python-3.6.4`` | ``foss/2018a`` -``0.37.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``0.37.0`` | ``-Python-3.6.4`` | ``intel/2018a`` -``0.39.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.43.1`` | | ``intel/2019a`` -``0.46.0`` | | ``foss/2019a`` -``0.47.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.47.0`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``0.50.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``0.50.0`` | ``-Python-3.8.2`` | ``intel/2020a`` -``0.50.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``0.52.0`` | ``-Python-3.8.2`` | ``foss/2020a`` ``0.52.0`` | | ``foss/2020b`` ``0.52.0`` | | ``fosscuda/2020b`` ``0.52.0`` | | ``intel/2020b`` @@ -40,6 +23,7 @@ version | versionsuffix | toolchain ``0.56.4`` | | ``foss/2022a`` ``0.58.1`` | | ``foss/2022b`` ``0.58.1`` | | ``foss/2023a`` +``0.60.0`` | | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/numexpr.md b/docs/version-specific/supported-software/n/numexpr.md index 17cd2aecad..a06c6e01d6 100644 --- a/docs/version-specific/supported-software/n/numexpr.md +++ b/docs/version-specific/supported-software/n/numexpr.md @@ -6,36 +6,14 @@ search: The numexpr package evaluates multiple-operator array expressions many times faster than NumPy can. It accepts the expression as a string, analyzes it, rewrites it more efficiently, and compiles it on the fly into code for its internal virtual machine (VM). Due to its integrated just-in-time (JIT) compiler, it does not require a compiler at runtime. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.5.2`` | ``-Python-2.7.11`` | ``intel/2016a`` -``2.6.1`` | ``-Python-2.7.12`` | ``foss/2016b`` -``2.6.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``2.6.1`` | ``-Python-3.5.2`` | ``intel/2016b`` -``2.6.4`` | ``-Python-3.5.1`` | ``foss/2016a`` -``2.6.4`` | ``-Python-2.7.13`` | ``foss/2017a`` -``2.6.4`` | ``-Python-3.6.4`` | ``foss/2018a`` -``2.6.4`` | ``-Python-3.6.1`` | ``intel/2017a`` -``2.6.4`` | ``-Python-3.6.3`` | ``intel/2017b`` -``2.6.4`` | ``-Python-2.7.14`` | ``intel/2018a`` -``2.6.4`` | ``-Python-3.6.4`` | ``intel/2018a`` -``2.6.5`` | ``-Python-2.7.15`` | ``foss/2018b`` -``2.6.5`` | ``-Python-3.6.6`` | ``foss/2018b`` -``2.6.5`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` -``2.6.5`` | ``-Python-2.7.15`` | ``intel/2018b`` -``2.6.5`` | ``-Python-3.6.6`` | ``intel/2018b`` -``2.7.0`` | | ``intel/2019a`` -``2.7.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``2.7.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``2.7.1`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``2.7.1`` | ``-Python-2.7.16`` | ``intel/2019b`` -``2.7.1`` | ``-Python-3.8.2`` | ``intel/2020a`` -``2.8.1`` | | ``foss/2021a`` -``2.8.1`` | | ``intel/2021a`` -``2.8.4`` | | ``foss/2022a`` -``2.9.0`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``2.8.1`` | ``foss/2021a`` +``2.8.1`` | ``intel/2021a`` +``2.8.4`` | ``foss/2022a`` +``2.9.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/numpy.md b/docs/version-specific/supported-software/n/numpy.md index aa79534de7..d3ee2ff1c3 100644 --- a/docs/version-specific/supported-software/n/numpy.md +++ b/docs/version-specific/supported-software/n/numpy.md @@ -4,20 +4,13 @@ search: --- # numpy -NumPy is the fundamental package for scientific computing with Python. It contains among other things: a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases. +NumPy is the fundamental package for scientific computing with Python. It contains among other things: a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.10.4`` | ``-Python-2.7.11`` | ``intel/2016a`` -``1.11.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``1.12.1`` | ``-Python-3.5.2`` | ``intel/2016b`` -``1.13.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``1.13.1`` | ``-Python-3.6.1`` | ``intel/2017a`` -``1.8.2`` | ``-Python-2.7.11`` | ``foss/2016a`` -``1.8.2`` | ``-Python-2.7.11`` | ``intel/2016a`` -``1.9.2`` | ``-Python-2.7.12`` | ``intel/2016b`` +``1.16.6`` | ``-Python-2.7.18`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ADMIXTURE.md b/docs/version-specific/supported-software/n/numpydoc.md similarity index 65% rename from docs/version-specific/supported-software/a/ADMIXTURE.md rename to docs/version-specific/supported-software/n/numpydoc.md index b56f1c7ba7..0210404edc 100644 --- a/docs/version-specific/supported-software/a/ADMIXTURE.md +++ b/docs/version-specific/supported-software/n/numpydoc.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# ADMIXTURE +# numpydoc -ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets. It uses the same statistical model as STRUCTURE but calculates estimates much more rapidly using a fast numerical optimization algorithm. +Sphinx extension to support docstrings in Numpy format This package provides the numpydoc Sphinx extension for handling docstrings formatted according to the NumPy documentation format. The extension also adds the code description directives np:function, np-c:function, etc. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.3.0`` | ``system`` +``1.8.0`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/nvitop.md b/docs/version-specific/supported-software/n/nvitop.md index 0542984145..e1c9f1797e 100644 --- a/docs/version-specific/supported-software/n/nvitop.md +++ b/docs/version-specific/supported-software/n/nvitop.md @@ -4,7 +4,7 @@ search: --- # nvitop -An interactive NVIDIA-GPU process viewer and beyond, the one-stop solution for GPU process management. +An interactive NVIDIA-GPU process viewer and beyond, the one-stop solution for GPU process management. *homepage*: diff --git a/docs/version-specific/supported-software/n/nvtop.md b/docs/version-specific/supported-software/n/nvtop.md index 5fb4158b41..2da0436021 100644 --- a/docs/version-specific/supported-software/n/nvtop.md +++ b/docs/version-specific/supported-software/n/nvtop.md @@ -10,8 +10,6 @@ htop-like GPU usage monitor version | toolchain --------|---------- -``1.0.0`` | ``fosscuda/2018b`` -``1.1.0`` | ``fosscuda/2019b`` ``1.2.1`` | ``GCCcore/10.2.0`` ``1.2.1`` | ``GCCcore/10.3.0`` ``1.2.2`` | ``GCCcore/10.2.0`` diff --git a/docs/version-specific/supported-software/o/OBITools.md b/docs/version-specific/supported-software/o/OBITools.md deleted file mode 100644 index b1e9a75d6b..0000000000 --- a/docs/version-specific/supported-software/o/OBITools.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# OBITools - -OBITools is a set of python programs developed to simplify the manipulation of sequence files. They were mainly designed to for analyzing Next Generation Sequencer outputs (454 or Illumina) in the context of DNA Metabarcoding. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.13`` | ``-Python-2.7.15`` | ``foss/2019a`` -``1.2.9`` | ``-Python-2.7.11`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/o/OCNet.md b/docs/version-specific/supported-software/o/OCNet.md deleted file mode 100644 index 6774577479..0000000000 --- a/docs/version-specific/supported-software/o/OCNet.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# OCNet - -Generate and analyze Optimal Channel Networks (OCNs): oriented spanning trees reproducing all scaling features characteristic of real, natural river networks. As such, they can be used in a variety of numerical experiments in the fields of hydrology, ecology and epidemiology. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.2.0`` | ``-R-3.6.0`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/o/OCaml.md b/docs/version-specific/supported-software/o/OCaml.md index cd624f159c..1703933f86 100644 --- a/docs/version-specific/supported-software/o/OCaml.md +++ b/docs/version-specific/supported-software/o/OCaml.md @@ -10,8 +10,6 @@ OCaml is a general purpose industrial-strength programming language with an emp version | toolchain --------|---------- -``4.02.3`` | ``foss/2016a`` -``4.07.1`` | ``foss/2018b`` ``4.14.0`` | ``GCC/11.3.0`` ``5.1.1`` | ``GCC/13.2.0`` diff --git a/docs/version-specific/supported-software/o/OMA.md b/docs/version-specific/supported-software/o/OMA.md deleted file mode 100644 index 4e8f4e7ded..0000000000 --- a/docs/version-specific/supported-software/o/OMA.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# OMA - -The OMA ('Orthologous MAtrix') project is a method and database for the inference of orthologs among complete genomes - -*homepage*: - -version | toolchain ---------|---------- -``2.1.1`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/o/ONNX-Runtime.md b/docs/version-specific/supported-software/o/ONNX-Runtime.md index e517b57063..eb5862934b 100644 --- a/docs/version-specific/supported-software/o/ONNX-Runtime.md +++ b/docs/version-specific/supported-software/o/ONNX-Runtime.md @@ -13,6 +13,9 @@ version | versionsuffix | toolchain ``1.10.0`` | ``-CUDA-11.3.1`` | ``foss/2021a`` ``1.10.0`` | | ``foss/2021a`` ``1.16.3`` | | ``foss/2022b`` +``1.19.2`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``1.19.2`` | ``-CUDA-12.6.0`` | ``foss/2023a`` +``1.19.2`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/ONNX.md b/docs/version-specific/supported-software/o/ONNX.md index a954915e01..fb54a460d0 100644 --- a/docs/version-specific/supported-software/o/ONNX.md +++ b/docs/version-specific/supported-software/o/ONNX.md @@ -13,6 +13,7 @@ version | toolchain ``1.11.0`` | ``foss/2021a`` ``1.15.0`` | ``foss/2022b`` ``1.15.0`` | ``gfbf/2023a`` +``1.17.0`` | ``gfbf/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OOMPA.md b/docs/version-specific/supported-software/o/OOMPA.md deleted file mode 100644 index 6ea9abd025..0000000000 --- a/docs/version-specific/supported-software/o/OOMPA.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# OOMPA - -OOMPA is a suite of R packages for the analysis of gene expression (RNA), proteomics profiling, and other high throughput molecular biology data. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.1.2`` | ``-R-3.3.1`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/o/OPARI2.md b/docs/version-specific/supported-software/o/OPARI2.md index 70afc18530..79a9c0ae8f 100644 --- a/docs/version-specific/supported-software/o/OPARI2.md +++ b/docs/version-specific/supported-software/o/OPARI2.md @@ -4,16 +4,12 @@ search: --- # OPARI2 -OPARI2, the successor of Forschungszentrum Juelich's OPARI, is a source-to-source instrumentation tool for OpenMP and hybrid codes. It surrounds OpenMP directives and runtime library calls with calls to the POMP2 measurement interface. +OPARI2, the successor of Forschungszentrum Juelich's OPARI, is a source-to-source instrumentation tool for OpenMP and hybrid codes. It surrounds OpenMP directives and runtime library calls with calls to the POMP2 measurement interface. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.0`` | ``foss/2016a`` -``2.0.5`` | ``GCCcore/8.2.0`` -``2.0.5`` | ``GCCcore/8.3.0`` -``2.0.5`` | ``GCCcore/9.3.0`` ``2.0.6`` | ``GCCcore/10.2.0`` ``2.0.6`` | ``GCCcore/10.3.0`` ``2.0.7`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/o/OPEN-SURFEX.md b/docs/version-specific/supported-software/o/OPEN-SURFEX.md new file mode 100644 index 0000000000..6611d926a5 --- /dev/null +++ b/docs/version-specific/supported-software/o/OPEN-SURFEX.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# OPEN-SURFEX + +SURFEX (SURFace EXternalisée) is a modelling platform that parametrizes land and water surfaces. SURFEX is being developed by Météo-France and Open-SURFEX is a freely available SURFEX version released under terms of CECILL-C Licence. + +*homepage*: + +version | toolchain +--------|---------- +``8.1.0`` | ``GCCcore/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/o/OPERA-MS.md b/docs/version-specific/supported-software/o/OPERA-MS.md index 493bdc5068..cda7963927 100644 --- a/docs/version-specific/supported-software/o/OPERA-MS.md +++ b/docs/version-specific/supported-software/o/OPERA-MS.md @@ -8,9 +8,9 @@ OPERA-MS is a hybrid metagenomic assembler which combines the advantages of sho *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.9.0-20200802`` | ``-Python-3.8.2`` | ``foss/2020a`` +version | toolchain +--------|---------- +``0.9.0-20240703`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OPERA.md b/docs/version-specific/supported-software/o/OPERA.md deleted file mode 100644 index 76745209e2..0000000000 --- a/docs/version-specific/supported-software/o/OPERA.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# OPERA - -An optimal genome scaffolding program - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0.6`` | ``-Perl-5.28.0`` | ``foss/2018b`` -``2.0.6`` | ``-Perl-5.28.0`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/o/OR-Tools.md b/docs/version-specific/supported-software/o/OR-Tools.md deleted file mode 100644 index 30325ef8c7..0000000000 --- a/docs/version-specific/supported-software/o/OR-Tools.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# OR-Tools - -Google Optimization Tools (a.k.a., OR-Tools) is an open-source, fast and portable software suite for solving combinatorial optimization problems. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``7.1`` | ``-Python-3.7.2`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/o/ORCA.md b/docs/version-specific/supported-software/o/ORCA.md index 4e4ba2b490..894506389e 100644 --- a/docs/version-specific/supported-software/o/ORCA.md +++ b/docs/version-specific/supported-software/o/ORCA.md @@ -4,18 +4,12 @@ search: --- # ORCA -ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single- and multireference correlated ab initio methods. It can also treat environmental and relativistic effects. +ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single- and multireference correlated ab initio methods. It can also treat environmental and relativistic effects. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``3_0_2-linux_x86-64`` | ``-OpenMPI-1.8.1`` | ``system`` -``4.0.0.2`` | ``-OpenMPI-2.0.2`` | ``system`` -``4.0.1`` | ``-OpenMPI-2.0.2`` | ``system`` -``4.1.0`` | ``-OpenMPI-3.1.3`` | ``system`` -``4.2.0`` | | ``gompi/2019b`` -``4.2.1`` | | ``gompi/2019b`` ``5.0.0`` | ``-static`` | ``gompi/2021a`` ``5.0.0`` | | ``gompi/2021a`` ``5.0.1`` | ``-static`` | ``gompi/2021a`` @@ -31,6 +25,8 @@ version | versionsuffix | toolchain ``6.0.0`` | | ``foss/2023b`` ``6.0.0`` | ``-avx2`` | ``gompi/2023a`` ``6.0.0`` | | ``gompi/2023a`` +``6.0.1`` | ``-avx2`` | ``gompi/2023a`` +``6.0.1`` | ``-avx2`` | ``gompi/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/ORFfinder.md b/docs/version-specific/supported-software/o/ORFfinder.md deleted file mode 100644 index 4d0e60e515..0000000000 --- a/docs/version-specific/supported-software/o/ORFfinder.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ORFfinder - -ORF finder searches for open reading frames (ORFs) in the DNA sequence you enter. The program returns the range of each ORF, along with its protein translation. Use ORF finder to search newly sequenced DNA for potential protein encoding segments, verify predicted protein using newly developed SMART BLAST or regular BLASTP. - -*homepage*: - -version | toolchain ---------|---------- -``0.4.3`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/o/OSU-Micro-Benchmarks.md b/docs/version-specific/supported-software/o/OSU-Micro-Benchmarks.md index 86ddab2fcf..86801a0cac 100644 --- a/docs/version-specific/supported-software/o/OSU-Micro-Benchmarks.md +++ b/docs/version-specific/supported-software/o/OSU-Micro-Benchmarks.md @@ -6,24 +6,12 @@ search: OSU Micro-Benchmarks -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``5.3.2`` | | ``foss/2016a`` -``5.3.2`` | | ``foss/2017a`` -``5.6.2`` | | ``gompi/2019a`` -``5.6.3`` | | ``gompi/2019b`` -``5.6.3`` | | ``gompi/2020a`` ``5.6.3`` | | ``gompi/2020b`` -``5.6.3`` | | ``gompic/2019b`` -``5.6.3`` | | ``gompic/2020a`` -``5.6.3`` | | ``iimpi/2019a`` -``5.6.3`` | | ``iimpi/2019b`` -``5.6.3`` | | ``iimpi/2020a`` ``5.6.3`` | | ``iimpi/2020b`` -``5.6.3`` | | ``iimpic/2019b`` -``5.6.3`` | | ``iimpic/2020a`` ``5.7`` | | ``gompi/2020b`` ``5.7`` | | ``gompic/2020b`` ``5.7`` | | ``iimpi/2020b`` @@ -52,6 +40,8 @@ version | versionsuffix | toolchain ``7.4`` | | ``gompi/2024.05`` ``7.4`` | | ``gompi/2024a`` ``7.4`` | | ``iimpi/2024a`` +``7.5`` | ``-CUDA-12.4.0`` | ``gompi/2023b`` +``7.5`` | ``-CUDA-12.6.0`` | ``gompi/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OTF2.md b/docs/version-specific/supported-software/o/OTF2.md index f7df0abd4a..c657a35fe7 100644 --- a/docs/version-specific/supported-software/o/OTF2.md +++ b/docs/version-specific/supported-software/o/OTF2.md @@ -4,17 +4,12 @@ search: --- # OTF2 -The Open Trace Format 2 is a highly scalable, memory efficient event trace data format plus support library. It is the new standard trace format for Scalasca, Vampir, and TAU and is open for other tools. +The Open Trace Format 2 is a highly scalable, memory efficient event trace data format plus support library. It is the new standard trace format for Scalasca, Vampir, and TAU and is open for other tools. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.0`` | ``foss/2016a`` -``2.0`` | ``foss/2017a`` -``2.2`` | ``GCCcore/8.2.0`` -``2.2`` | ``GCCcore/8.3.0`` -``2.2`` | ``GCCcore/9.3.0`` ``2.3`` | ``GCCcore/10.2.0`` ``2.3`` | ``GCCcore/10.3.0`` ``3.0`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/o/Oases.md b/docs/version-specific/supported-software/o/Oases.md index 96844bd851..5e3406a99b 100644 --- a/docs/version-specific/supported-software/o/Oases.md +++ b/docs/version-specific/supported-software/o/Oases.md @@ -8,11 +8,9 @@ Oases is a de novo transcriptome assembler designed to produce transcripts from *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.2.08`` | | ``foss/2016b`` -``0.2.08`` | ``-kmer_101`` | ``intel/2017b`` -``20180312`` | | ``GCC/12.3.0`` +version | toolchain +--------|---------- +``20180312`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/Octave.md b/docs/version-specific/supported-software/o/Octave.md index dc4531a528..3921464630 100644 --- a/docs/version-specific/supported-software/o/Octave.md +++ b/docs/version-specific/supported-software/o/Octave.md @@ -6,22 +6,12 @@ search: GNU Octave is a high-level interpreted language, primarily intended for numerical computations. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.0.0`` | | ``foss/2016a`` -``4.0.3`` | | ``intel/2016b`` -``4.2.1`` | | ``foss/2018a`` -``4.2.1`` | | ``intel/2016b`` -``4.2.1`` | ``-mt`` | ``intel/2017a`` -``4.2.1`` | | ``intel/2017a`` -``4.2.2`` | | ``foss/2018a`` -``4.4.1`` | | ``foss/2018b`` -``5.1.0`` | | ``foss/2019a`` -``5.1.0`` | | ``foss/2019b`` -``6.2.0`` | | ``foss/2020b`` -``7.1.0`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``6.2.0`` | ``foss/2020b`` +``7.1.0`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/Open-Data-Cube-Core.md b/docs/version-specific/supported-software/o/Open-Data-Cube-Core.md deleted file mode 100644 index dca053952f..0000000000 --- a/docs/version-specific/supported-software/o/Open-Data-Cube-Core.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Open-Data-Cube-Core - -The Open Data Cube Core provides an integrated gridded data analysis environment for decades of analysis ready earth observation satellite and related data from multiple satellite and other acquisition systems. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.8.3`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/o/OpenAI-Gym.md b/docs/version-specific/supported-software/o/OpenAI-Gym.md index 5fb1fafbf8..4df8f99159 100644 --- a/docs/version-specific/supported-software/o/OpenAI-Gym.md +++ b/docs/version-specific/supported-software/o/OpenAI-Gym.md @@ -8,12 +8,11 @@ A toolkit for developing and comparing reinforcement learning algorithms. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.17.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.21.0`` | | ``foss/2021b`` -``0.26.2`` | | ``foss/2022a`` -``0.26.2`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``0.21.0`` | ``foss/2021b`` +``0.26.2`` | ``foss/2022a`` +``0.26.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OpenBLAS.md b/docs/version-specific/supported-software/o/OpenBLAS.md index ed15986ac2..b58b97428b 100644 --- a/docs/version-specific/supported-software/o/OpenBLAS.md +++ b/docs/version-specific/supported-software/o/OpenBLAS.md @@ -6,31 +6,10 @@ search: OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``0.2.12`` | ``-LAPACK-3.5.0`` | ``GCC/4.9.2`` -``0.2.13`` | ``-LAPACK-3.5.0`` | ``GCC/4.8.4`` -``0.2.13`` | ``-LAPACK-3.5.0`` | ``GCC/4.9.2`` -``0.2.14`` | ``-LAPACK-3.5.0`` | ``GNU/4.9.2-2.25`` -``0.2.14`` | ``-LAPACK-3.5.0`` | ``GNU/4.9.3-2.25`` -``0.2.15`` | ``-LAPACK-3.6.0`` | ``GCC/4.9.3-2.25`` -``0.2.18`` | ``-LAPACK-3.6.0`` | ``GCC/4.9.4-2.25`` -``0.2.18`` | ``-LAPACK-3.6.0`` | ``GCC/5.3.0-2.26`` -``0.2.18`` | ``-LAPACK-3.6.0`` | ``GCC/5.4.0-2.26`` -``0.2.18`` | ``-LAPACK-3.6.1`` | ``GCC/5.4.0-2.26`` -``0.2.18`` | ``-LAPACK-3.6.1`` | ``gompi/2016.07`` -``0.2.19`` | ``-LAPACK-3.7.0`` | ``GCC/5.4.0-2.26`` -``0.2.19`` | ``-LAPACK-3.7.0`` | ``GCC/6.3.0-2.27`` -``0.2.19`` | ``-LAPACK-3.6.1`` | ``gompi/2016.09`` -``0.2.20`` | | ``GCC/5.4.0-2.26`` -``0.2.20`` | | ``GCC/6.4.0-2.28`` -``0.2.20`` | | ``GCC/7.2.0-2.29`` -``0.2.9`` | ``-LAPACK-3.5.0`` | ``GCC/4.8.3`` -``0.3.0`` | | ``GCC/6.4.0-2.28`` -``0.3.0`` | | ``GCC/7.3.0-2.30`` -``0.3.1`` | | ``GCC/7.3.0-2.30`` ``0.3.12`` | | ``GCC/10.2.0`` ``0.3.15`` | | ``GCC/10.3.0`` ``0.3.17`` | | ``GCC/10.3.0`` @@ -43,14 +22,9 @@ version | versionsuffix | toolchain ``0.3.21`` | | ``GCC/12.2.0`` ``0.3.23`` | | ``GCC/12.3.0`` ``0.3.24`` | | ``GCC/13.2.0`` +``0.3.27`` | ``-seq-iface64`` | ``GCC/13.2.0`` +``0.3.27`` | ``-seq-iface64`` | ``GCC/13.3.0`` ``0.3.27`` | | ``GCC/13.3.0`` -``0.3.3`` | | ``GCC/8.2.0-2.31.1`` -``0.3.4`` | | ``GCC/8.2.0-2.31.1`` -``0.3.5`` | | ``GCC/8.2.0-2.31.1`` -``0.3.6`` | | ``GCC/8.3.0-2.32`` -``0.3.7`` | | ``GCC/8.3.0`` -``0.3.8`` | | ``GCC/9.2.0`` -``0.3.9`` | | ``GCC/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OpenBabel.md b/docs/version-specific/supported-software/o/OpenBabel.md index 75484e452c..eda9d8bfbd 100644 --- a/docs/version-specific/supported-software/o/OpenBabel.md +++ b/docs/version-specific/supported-software/o/OpenBabel.md @@ -6,21 +6,13 @@ search: Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.3.2`` | ``-Python-2.7.11`` | ``foss/2016a`` -``2.4.1`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.4.1`` | ``-Python-2.7.15`` | ``intel/2018b`` -``2.4.1`` | ``-Python-3.6.6`` | ``intel/2018b`` -``2.4.1`` | ``-Python-3.7.2`` | ``intel/2019a`` -``3.0.0`` | ``-Python-3.7.4`` | ``gompi/2019b`` -``3.1.1`` | ``-Python-3.7.4`` | ``gompi/2019b`` -``3.1.1`` | | ``gompi/2021a`` -``3.1.1`` | | ``gompi/2022a`` -``3.1.1`` | | ``gompi/2023a`` -``3.1.1`` | ``-Python-3.8.2`` | ``iimpi/2020a`` +version | toolchain +--------|---------- +``3.1.1`` | ``gompi/2021a`` +``3.1.1`` | ``gompi/2022a`` +``3.1.1`` | ``gompi/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OpenCV.md b/docs/version-specific/supported-software/o/OpenCV.md index 128957fd8d..bda4d7d34b 100644 --- a/docs/version-specific/supported-software/o/OpenCV.md +++ b/docs/version-specific/supported-software/o/OpenCV.md @@ -4,39 +4,12 @@ search: --- # OpenCV -OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library. OpenCV was built to provide a common infrastructure for computer vision applications and to accelerate the use of machine perception in the commercial products. +OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library. OpenCV was built to provide a common infrastructure for computer vision applications and to accelerate the use of machine perception in the commercial products. Includes extra modules for OpenCV from the contrib repository. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2.4.12`` | | ``intel/2016a`` -``3.1.0`` | | ``foss/2016a`` -``3.1.0`` | | ``foss/2016b`` -``3.1.0`` | | ``intel/2016a`` -``3.1.0`` | | ``intel/2016b`` -``3.3.0`` | ``-Python-2.7.14`` | ``foss/2017b`` -``3.3.0`` | ``-Python-3.6.3`` | ``foss/2017b`` -``3.3.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``3.3.0`` | ``-Python-3.6.1`` | ``intel/2017a`` -``3.3.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``3.3.0`` | ``-Python-3.6.3`` | ``intel/2017b`` -``3.4.1`` | ``-Python-2.7.14`` | ``foss/2018a`` -``3.4.1`` | ``-Python-3.6.4-contrib`` | ``foss/2018a`` -``3.4.1`` | ``-Python-3.6.4`` | ``foss/2018a`` -``3.4.1`` | ``-Python-2.7.14`` | ``intel/2018a`` -``3.4.1`` | ``-Python-3.6.4`` | ``intel/2018a`` -``3.4.5`` | ``-Python-2.7.15`` | ``foss/2018b`` -``3.4.7`` | ``-Python-2.7.15`` | ``foss/2019a`` -``3.4.7`` | ``-Python-3.7.2`` | ``foss/2019a`` -``3.4.7`` | ``-Python-2.7.15`` | ``fosscuda/2019a`` -``3.4.7`` | ``-Python-3.7.2`` | ``fosscuda/2019a`` -``4.0.1`` | ``-Python-2.7.15`` | ``foss/2018b`` -``4.0.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``4.2.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``4.2.0`` | ``-Python-3.8.2-contrib`` | ``foss/2020a`` -``4.2.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``4.2.0`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` ``4.5.1`` | ``-contrib`` | ``foss/2020b`` ``4.5.1`` | ``-contrib`` | ``fosscuda/2020b`` ``4.5.3`` | ``-CUDA-11.3.1-contrib`` | ``foss/2021a`` diff --git a/docs/version-specific/supported-software/o/OpenCoarrays.md b/docs/version-specific/supported-software/o/OpenCoarrays.md deleted file mode 100644 index 2b3976a115..0000000000 --- a/docs/version-specific/supported-software/o/OpenCoarrays.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# OpenCoarrays - -OpenCoarrays is an open-source software project that supports the coarray Fortran (CAF) parallel programming features of the Fortran 2008 standard and several features proposed for Fortran 2015 in the draft Technical Specification TS 18508 Additional Parallel Features in Fortran. - -*homepage*: - -version | toolchain ---------|---------- -``1.9.0`` | ``gompi/2017a`` -``2.2.0`` | ``gompi/2018b`` -``2.8.0`` | ``gompi/2019b`` -``2.9.2`` | ``gompi/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/o/OpenColorIO.md b/docs/version-specific/supported-software/o/OpenColorIO.md deleted file mode 100644 index 810ae73a7c..0000000000 --- a/docs/version-specific/supported-software/o/OpenColorIO.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# OpenColorIO - -OpenColorIO (OCIO) is a complete color management solution geared towards motion picture production with an emphasis on visual effects and computer animation. - -*homepage*: - -version | toolchain ---------|---------- -``1.1.0`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/o/OpenEXR.md b/docs/version-specific/supported-software/o/OpenEXR.md index 6a65a9c985..a336855806 100644 --- a/docs/version-specific/supported-software/o/OpenEXR.md +++ b/docs/version-specific/supported-software/o/OpenEXR.md @@ -6,16 +6,10 @@ search: OpenEXR is a high dynamic-range (HDR) image file format developed by Industrial Light & Magic for use in computer imaging applications -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.2.0`` | ``intel/2016b`` -``2.2.0`` | ``intel/2017a`` -``2.3.0`` | ``foss/2018b`` -``2.3.0`` | ``intel/2018b`` -``2.4.0`` | ``GCCcore/8.3.0`` -``2.4.1`` | ``GCCcore/9.3.0`` ``2.5.5`` | ``GCCcore/10.2.0`` ``3.0.1`` | ``GCCcore/10.3.0`` ``3.1.1`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/o/OpenFOAM-Extend.md b/docs/version-specific/supported-software/o/OpenFOAM-Extend.md index c2ff81ca56..9d51486d4c 100644 --- a/docs/version-specific/supported-software/o/OpenFOAM-Extend.md +++ b/docs/version-specific/supported-software/o/OpenFOAM-Extend.md @@ -4,19 +4,13 @@ search: --- # OpenFOAM-Extend -OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics. +OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``3.1`` | | ``gimkl/2.11.5`` -``3.2`` | | ``gimkl/2.11.5`` -``3.2`` | | ``intel/2016a`` -``4.0`` | | ``intel/2017a`` -``4.0`` | ``-Python-2.7.16`` | ``intel/2019b`` -``4.1-20191120`` | ``-Python-2.7.16`` | ``intel/2019b`` -``4.1-20200408`` | ``-Python-2.7.16`` | ``foss/2019b`` +``4.1-20210705`` | ``-Python-2.7.18`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OpenFOAM.md b/docs/version-specific/supported-software/o/OpenFOAM.md index fce5634dfc..c45a7f43d8 100644 --- a/docs/version-specific/supported-software/o/OpenFOAM.md +++ b/docs/version-specific/supported-software/o/OpenFOAM.md @@ -17,57 +17,21 @@ version | versionsuffix | toolchain ``11`` | | ``foss/2022a`` ``11`` | | ``foss/2023a`` ``12`` | | ``foss/2023a`` -``2.2.2`` | | ``intel/2016a`` -``2.2.2`` | | ``intel/2017a`` -``2.2.2`` | | ``intel/2018a`` -``2.2.x`` | | ``intel/2019a`` -``2.3.1`` | | ``intel/2017a`` -``2.3.1`` | | ``intel/2019b`` -``2.4.0`` | | ``intel/2017a`` -``2.4.0`` | | ``intel/2019a`` -``3.0.0`` | | ``foss/2016a`` -``3.0.1`` | | ``intel/2016b`` -``3.0.1`` | | ``intel/2018a`` -``4.0`` | | ``foss/2016b`` -``4.0`` | | ``intel/2016b`` -``4.1`` | | ``foss/2016b`` -``4.1`` | | ``intel/2017a`` -``4.x-20170904`` | | ``intel/2016b`` -``5.0-20180108`` | | ``foss/2018a`` -``5.0-20180108`` | | ``intel/2017b`` -``5.0-20180108`` | | ``intel/2018a`` -``5.0-20180606`` | | ``foss/2019b`` -``5.0`` | | ``foss/2017b`` -``5.0`` | | ``intel/2017a`` -``5.0`` | | ``intel/2017b`` -``6`` | | ``foss/2018b`` -``6`` | | ``foss/2019b`` -``6`` | | ``intel/2018a`` -``7`` | ``-20200508`` | ``foss/2019b`` -``7`` | | ``foss/2019b`` +``5.0-20180606`` | | ``foss/2023a`` +``6`` | | ``foss/2023a`` ``7`` | ``-20200508-int64`` | ``foss/2022a`` ``7`` | ``-20200508`` | ``foss/2022a`` -``8`` | | ``foss/2020a`` ``8`` | ``-20210316`` | ``foss/2020b`` ``8`` | | ``foss/2020b`` +``8`` | | ``foss/2023a`` ``9`` | | ``foss/2021a`` +``9`` | | ``foss/2023a`` ``9`` | | ``intel/2021a`` -``v1606+`` | | ``foss/2018b`` -``v1612+`` | | ``foss/2018b`` -``v1712`` | | ``foss/2017b`` -``v1712`` | | ``intel/2017b`` -``v1806`` | | ``foss/2018b`` -``v1812`` | | ``foss/2018b`` -``v1906`` | | ``foss/2019b`` -``v1912`` | | ``foss/2019b`` -``v1912`` | | ``intel/2019b`` -``v2006`` | | ``foss/2020a`` -``v2006`` | | ``intel/2020a`` -``v2012`` | | ``foss/2020a`` ``v2106`` | | ``foss/2021a`` ``v2112`` | | ``foss/2020b`` ``v2112`` | | ``foss/2021b`` ``v2112`` | | ``foss/2022a`` +``v2112`` | | ``foss/2023a`` ``v2206`` | ``-int64`` | ``foss/2022a`` ``v2206`` | | ``foss/2022a`` ``v2306`` | | ``foss/2022b`` diff --git a/docs/version-specific/supported-software/o/OpenForceField-Toolkit.md b/docs/version-specific/supported-software/o/OpenForceField-Toolkit.md index ce918926d7..f194605c43 100644 --- a/docs/version-specific/supported-software/o/OpenForceField-Toolkit.md +++ b/docs/version-specific/supported-software/o/OpenForceField-Toolkit.md @@ -4,7 +4,7 @@ search: --- # OpenForceField-Toolkit -The Open Force Field Toolkit provides implementations of the SMIRNOFF format, parameterization engine, and other tools. +The Open Force Field Toolkit provides implementations of the SMIRNOFF format, parameterization engine, and other tools. *homepage*: diff --git a/docs/version-specific/supported-software/o/OpenForceField.md b/docs/version-specific/supported-software/o/OpenForceField.md deleted file mode 100644 index e74613a96f..0000000000 --- a/docs/version-specific/supported-software/o/OpenForceField.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# OpenForceField - -Simulation and Parameter Estimation in Geophysics - A python package for simulation and gradient based parameter estimation in the context of geophysical applications. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.7.0`` | ``-Python-3.8.2`` | ``intel/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/o/OpenImageIO.md b/docs/version-specific/supported-software/o/OpenImageIO.md index c3ba287869..81b6a91ed9 100644 --- a/docs/version-specific/supported-software/o/OpenImageIO.md +++ b/docs/version-specific/supported-software/o/OpenImageIO.md @@ -6,20 +6,13 @@ search: OpenImageIO is a library for reading and writing images, and a bunch of related classes, utilities, and applications. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.6.17`` | ``intel/2016b`` -``1.7.17`` | ``intel/2017a`` -``1.8.16`` | ``foss/2018b`` -``1.8.16`` | ``intel/2018b`` -``2.0.12`` | ``gompi/2019b`` -``2.0.12`` | ``iimpi/2019b`` -``2.1.12.0`` | ``gompi/2020a`` -``2.1.12.0`` | ``iimpi/2020a`` ``2.3.17.0`` | ``GCC/11.3.0`` ``2.4.14.0`` | ``GCC/12.3.0`` +``2.5.15.0`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OpenJPEG.md b/docs/version-specific/supported-software/o/OpenJPEG.md index 5a6c66a527..aa1ab55018 100644 --- a/docs/version-specific/supported-software/o/OpenJPEG.md +++ b/docs/version-specific/supported-software/o/OpenJPEG.md @@ -6,19 +6,13 @@ search: OpenJPEG is an open-source JPEG 2000 codec written in C language. It has been developed in order to promote the use of JPEG 2000, a still-image compression standard from the Joint Photographic Experts Group (JPEG). Since may 2015, it is officially recognized by ISO/IEC and ITU-T as a JPEG 2000 Reference Software. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.1`` | ``GCCcore/6.4.0`` -``2.3.0`` | ``GCCcore/6.4.0`` -``2.3.0`` | ``GCCcore/7.3.0`` -``2.3.1`` | ``GCCcore/8.2.0`` -``2.3.1`` | ``GCCcore/8.3.0`` ``2.4.0`` | ``GCCcore/10.2.0`` ``2.4.0`` | ``GCCcore/10.3.0`` ``2.4.0`` | ``GCCcore/11.2.0`` -``2.4.0`` | ``GCCcore/9.3.0`` ``2.5.0`` | ``GCCcore/11.3.0`` ``2.5.0`` | ``GCCcore/12.2.0`` ``2.5.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/o/OpenKIM-API.md b/docs/version-specific/supported-software/o/OpenKIM-API.md deleted file mode 100644 index d63e2c9839..0000000000 --- a/docs/version-specific/supported-software/o/OpenKIM-API.md +++ /dev/null @@ -1,21 +0,0 @@ ---- -search: - boost: 0.5 ---- -# OpenKIM-API - -Open Knowledgebase of Interatomic Models. OpenKIM is an API and a collection of interatomic models (potentials) for atomistic simulations. It is a library that can be used by simulation programs to get access to the models in the OpenKIM database. This EasyBuild only installs the API, the models have to be installed by the user by running kim-api-collections-management install user MODELNAME or kim-api-collections-management install user OpenKIM to install them all. - -*homepage*: - -version | toolchain ---------|---------- -``1.9.2`` | ``foss/2016b`` -``1.9.2`` | ``foss/2017b`` -``1.9.7`` | ``foss/2018b`` -``1.9.7`` | ``intel/2018b`` -``1.9.7`` | ``iomkl/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/o/OpenMM-PLUMED.md b/docs/version-specific/supported-software/o/OpenMM-PLUMED.md deleted file mode 100644 index 3fabcdba6a..0000000000 --- a/docs/version-specific/supported-software/o/OpenMM-PLUMED.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# OpenMM-PLUMED - -This project provides a connection between OpenMM and PLUMED. It allows you to bias or analyze an OpenMM simulation based on collective variables. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0`` | ``-Python-3.8.2`` | ``intel/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/ADDA.md b/docs/version-specific/supported-software/o/OpenMM-Torch.md similarity index 69% rename from docs/version-specific/supported-software/a/ADDA.md rename to docs/version-specific/supported-software/o/OpenMM-Torch.md index c507d745e7..671c5739e3 100644 --- a/docs/version-specific/supported-software/a/ADDA.md +++ b/docs/version-specific/supported-software/o/OpenMM-Torch.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# ADDA +# OpenMM-Torch -ADDA is an open-source parallel implementation of the discrete dipole approximation, capable to simulate light scattering by particles of arbitrary shape and composition in a wide range of particle sizes. +OpenMM-Torch is an OpenMM plugin to define forces with neural networks. The OpenMM-Torch package provides an interface to the PyTorch machine learning framework. It lets you define new types of forces through PyTorch code. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.3b4`` | ``foss/2019a`` +``20240816`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OpenMM.md b/docs/version-specific/supported-software/o/OpenMM.md index 4160311c61..0d0592e97a 100644 --- a/docs/version-specific/supported-software/o/OpenMM.md +++ b/docs/version-specific/supported-software/o/OpenMM.md @@ -6,19 +6,12 @@ search: OpenMM is a toolkit for molecular simulation. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``7.1.1`` | ``-Python-3.6.3`` | ``intel/2017b`` -``7.4.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``7.4.1`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``7.4.1`` | ``-Python-3.7.4`` | ``intel/2019b`` -``7.4.2`` | ``-Python-3.8.2`` | ``intel/2020a`` ``7.5.0`` | | ``foss/2020b`` -``7.5.0`` | ``-Python-3.8.2`` | ``fosscuda/2020a`` ``7.5.0`` | | ``fosscuda/2020b`` -``7.5.0`` | ``-Python-3.8.2`` | ``intel/2020a`` ``7.5.0`` | | ``intel/2020b`` ``7.5.1`` | | ``foss/2020b`` ``7.5.1`` | ``-CUDA-11.3.1-DeepMind-patch`` | ``foss/2021a`` @@ -34,6 +27,7 @@ version | versionsuffix | toolchain ``8.0.0`` | | ``foss/2022a`` ``8.0.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``8.0.0`` | | ``foss/2023a`` +``8.1.2`` | | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OpenMMTools.md b/docs/version-specific/supported-software/o/OpenMMTools.md index 5c127753b8..edbe364fe0 100644 --- a/docs/version-specific/supported-software/o/OpenMMTools.md +++ b/docs/version-specific/supported-software/o/OpenMMTools.md @@ -4,13 +4,13 @@ search: --- # OpenMMTools -A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine. openmmtools is a Python library layer that sits on top of OpenMM to provide access to a variety of useful tools for building full-featured molecular simulation packages. +A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine. openmmtools is a Python library layer that sits on top of OpenMM to provide access to a variety of useful tools for building full-featured molecular simulation packages. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.20.0`` | ``-Python-3.8.2`` | ``intel/2020a`` +version | toolchain +--------|---------- +``0.23.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OpenMPI.md b/docs/version-specific/supported-software/o/OpenMPI.md index f2650e12d5..21b02cc76a 100644 --- a/docs/version-specific/supported-software/o/OpenMPI.md +++ b/docs/version-specific/supported-software/o/OpenMPI.md @@ -4,73 +4,13 @@ search: --- # OpenMPI -The Open MPI Project is an open source MPI-2 implementation. +The Open MPI Project is an open source MPI-3 implementation. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.10.1`` | | ``GCC/4.9.3-2.25`` -``1.10.2`` | | ``GCC/4.9.3-2.25`` -``1.10.2`` | | ``GCC/5.3.0-2.26`` -``1.10.2`` | | ``GCC/6.1.0-2.27`` -``1.10.2`` | | ``PGI/16.3-GCC-4.9.3-2.25`` -``1.10.2`` | | ``PGI/16.4-GCC-5.3.0-2.26`` -``1.10.3`` | | ``GCC/5.4.0-2.26`` -``1.10.3`` | | ``GCC/6.1.0-2.27`` -``1.10.3`` | | ``iccifort/2016.3.210-GCC-5.4.0-2.26`` -``1.10.4`` | | ``PGI/16.7-GCC-5.4.0-2.26`` -``1.10.4`` | | ``iccifort/2016.3.210-GCC-4.9.3-2.25`` -``1.6.5`` | ``-no-OFED`` | ``GCC/4.8.1`` -``1.6.5`` | | ``GCC/4.8.1`` -``1.6.5`` | ``-no-OFED`` | ``GCC/4.8.2`` -``1.6.5`` | | ``GCC/4.8.2`` -``1.6.5`` | | ``GCC/4.8.3`` -``1.7.3`` | | ``GCC/4.8.2`` -``1.8.1`` | | ``GCC/4.8.3`` -``1.8.3`` | | ``GCC/4.9.2`` -``1.8.4`` | | ``GCC/4.8.4`` -``1.8.4`` | | ``GCC/4.9.2`` -``1.8.5`` | | ``GNU/4.9.2-2.25`` -``1.8.6`` | | ``GNU/4.9.3-2.25`` -``1.8.8`` | | ``GNU/4.9.3-2.25`` -``2.0.0`` | | ``GCC/5.2.0`` -``2.0.1`` | | ``GCC/6.2.0-2.27`` -``2.0.1`` | | ``iccifort/2017.1.132-GCC-5.4.0-2.26`` -``2.0.2`` | ``-opa`` | ``GCC/6.3.0-2.27`` -``2.0.2`` | | ``GCC/6.3.0-2.27`` -``2.0.2`` | | ``iccifort/2017.1.132-GCC-6.3.0-2.27`` -``2.1.0`` | | ``GCC/6.3.0-2.28`` -``2.1.1`` | | ``GCC/6.4.0-2.28`` -``2.1.1`` | | ``gcccuda/2017b`` -``2.1.1`` | | ``iccifort/2017.4.196-GCC-6.4.0-2.28`` -``2.1.2`` | | ``GCC/6.4.0-2.28`` -``2.1.2`` | | ``gcccuda/2018a`` -``2.1.2`` | | ``iccifort/2018.1.163-GCC-6.4.0-2.28`` -``2.1.3`` | | ``iccifort/2018.2.199-GCC-6.4.0-2.28`` -``3.0.0`` | | ``GCC/7.2.0-2.29`` -``3.1.0`` | | ``GCC/7.3.0-2.30`` -``3.1.1`` | | ``GCC/7.3.0-2.30`` -``3.1.1`` | | ``gcccuda/2018b`` -``3.1.1`` | | ``iccifort/2018.3.222-GCC-7.3.0-2.30`` -``3.1.2`` | | ``GCC/8.2.0-2.31.1`` -``3.1.3`` | | ``GCC/8.2.0-2.31.1`` -``3.1.3`` | | ``gcccuda/2019a`` -``3.1.3`` | | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``3.1.4`` | | ``GCC/8.3.0-2.32`` -``3.1.4`` | | ``GCC/8.3.0`` -``3.1.4`` | | ``gcccuda/2019b`` -``3.1.4`` | | ``iccifort/2019.5.281`` -``4.0.0`` | ``-hpcx`` | ``GCC/8.2.0-2.31.1`` -``4.0.0`` | | ``GCC/8.2.0-2.31.1`` -``4.0.1`` | | ``GCC/8.3.0-2.32`` -``4.0.2`` | | ``GCC/9.2.0-2.32`` -``4.0.3`` | | ``GCC/9.3.0`` -``4.0.3`` | | ``gcccuda/2020a`` -``4.0.3`` | | ``iccifort/2020.1.217`` -``4.0.3`` | | ``iccifortcuda/2020a`` ``4.0.5`` | | ``GCC/10.2.0`` -``4.0.5`` | | ``GCC/9.3.0`` ``4.0.5`` | ``-CUDA-11.2.1`` | ``NVHPC/21.2`` ``4.0.5`` | | ``gcccuda/2020b`` ``4.0.5`` | | ``iccifort/2020.4.304`` @@ -86,12 +26,14 @@ version | versionsuffix | toolchain ``4.1.4`` | | ``GCC/11.3.0`` ``4.1.4`` | | ``GCC/12.2.0`` ``4.1.4`` | | ``NVHPC/22.7-CUDA-11.7.0`` +``4.1.4`` | | ``intel-compilers/2022.2.1`` ``4.1.5`` | | ``GCC/12.2.0`` ``4.1.5`` | | ``GCC/12.3.0`` ``4.1.5`` | | ``intel-compilers/2023.1.0`` ``4.1.6`` | | ``GCC/13.2.0`` ``5.0.3`` | | ``GCC/13.3.0`` -``system`` | | ``GCC/system-2.29`` +``5.0.3`` | | ``NVHPC/24.9-CUDA-12.6.0`` +``5.0.7`` | | ``GCC/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OpenMS.md b/docs/version-specific/supported-software/o/OpenMS.md deleted file mode 100644 index 3e6c3ed0ca..0000000000 --- a/docs/version-specific/supported-software/o/OpenMS.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# OpenMS - -As part of the deNBI Center for integrative Bioinformatics, OpenMS offers an open-source software C++ library (+ python bindings) for LC/MS data management and analyses. It provides an infrastructure for the rapid development of mass spectrometry related software as well as a rich toolset built on top of it. - -*homepage*: - -version | toolchain ---------|---------- -``2.4.0`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/o/OpenMolcas.md b/docs/version-specific/supported-software/o/OpenMolcas.md index ba905c8464..c796a844e6 100644 --- a/docs/version-specific/supported-software/o/OpenMolcas.md +++ b/docs/version-specific/supported-software/o/OpenMolcas.md @@ -10,9 +10,6 @@ OpenMolcas is a quantum chemistry software package version | versionsuffix | toolchain --------|---------------|---------- -``18.09`` | ``-Python-3.6.6`` | ``intel/2018b`` -``20.10`` | ``-Python-3.8.2-noGA`` | ``intel/2020a`` -``20.10`` | ``-Python-3.8.2`` | ``intel/2020a`` ``21.06`` | | ``intel/2021a`` ``21.06`` | | ``iomkl/2021a`` ``22.06`` | | ``intel/2022a`` diff --git a/docs/version-specific/supported-software/o/OpenNLP.md b/docs/version-specific/supported-software/o/OpenNLP.md deleted file mode 100644 index 71a4aac92f..0000000000 --- a/docs/version-specific/supported-software/o/OpenNLP.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# OpenNLP - -The Apache OpenNLP library is a machine learning based toolkit for the processing of natural language text. - -*homepage*: - -version | toolchain ---------|---------- -``1.8.1`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/o/OpenNMT-py.md b/docs/version-specific/supported-software/o/OpenNMT-py.md new file mode 100644 index 0000000000..524b0f3c86 --- /dev/null +++ b/docs/version-specific/supported-software/o/OpenNMT-py.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# OpenNMT-py + +OpenNMT is an open source ecosystem for neural machine translation and neural sequence learning + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``3.5.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/o/OpenPGM.md b/docs/version-specific/supported-software/o/OpenPGM.md index aa7353fbcb..5af18e6acb 100644 --- a/docs/version-specific/supported-software/o/OpenPGM.md +++ b/docs/version-specific/supported-software/o/OpenPGM.md @@ -18,17 +18,6 @@ version | toolchain ``5.2.122`` | ``GCCcore/12.3.0`` ``5.2.122`` | ``GCCcore/13.2.0`` ``5.2.122`` | ``GCCcore/13.3.0`` -``5.2.122`` | ``GCCcore/6.4.0`` -``5.2.122`` | ``GCCcore/7.3.0`` -``5.2.122`` | ``GCCcore/8.2.0`` -``5.2.122`` | ``GCCcore/8.3.0`` -``5.2.122`` | ``GCCcore/9.3.0`` -``5.2.122`` | ``foss/2016a`` -``5.2.122`` | ``foss/2016b`` -``5.2.122`` | ``foss/2017a`` -``5.2.122`` | ``intel/2016a`` -``5.2.122`` | ``intel/2016b`` -``5.2.122`` | ``intel/2017a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OpenPIV.md b/docs/version-specific/supported-software/o/OpenPIV.md deleted file mode 100644 index 33ed5bc9cb..0000000000 --- a/docs/version-specific/supported-software/o/OpenPIV.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# OpenPIV - -OpenPIV is an open source Particle Image Velocimetry analysis software - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.21.8`` | ``-Python-3.7.4`` | ``intel/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/o/OpenRefine.md b/docs/version-specific/supported-software/o/OpenRefine.md index 4b8710d19d..a4ed132a18 100644 --- a/docs/version-specific/supported-software/o/OpenRefine.md +++ b/docs/version-specific/supported-software/o/OpenRefine.md @@ -10,7 +10,6 @@ OpenRefine is a power tool that allows you to load data, understand it, clean it version | versionsuffix | toolchain --------|---------------|---------- -``2.7`` | ``-Java-1.8.0_144`` | ``system`` ``3.4.1`` | ``-Java-11`` | ``system`` diff --git a/docs/version-specific/supported-software/o/OpenSSL.md b/docs/version-specific/supported-software/o/OpenSSL.md index 6f1ee1d618..ec60ea6cde 100644 --- a/docs/version-specific/supported-software/o/OpenSSL.md +++ b/docs/version-specific/supported-software/o/OpenSSL.md @@ -4,27 +4,13 @@ search: --- # OpenSSL -The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library. +The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.0.1f`` | ``GCC/4.8.2`` -``1.0.1k`` | ``GCC/4.9.2`` -``1.0.1s`` | ``foss/2016a`` -``1.0.1s`` | ``intel/2016a`` -``1.0.2g`` | ``GCCcore/4.9.3`` -``1.0.2h`` | ``foss/2016.04`` -``1.0.2h`` | ``iomkl/2016.07`` -``1.0.2h`` | ``iomkl/2016.09-GCC-4.9.3-2.25`` ``1.0`` | ``system`` -``1.1.0c`` | ``GCC/5.4.0-2.26`` -``1.1.0e`` | ``intel/2016b`` -``1.1.0h`` | ``GCCcore/7.3.0`` -``1.1.1b`` | ``GCCcore/8.2.0`` -``1.1.1d`` | ``GCCcore/8.3.0`` -``1.1.1e`` | ``GCCcore/9.3.0`` ``1.1.1h`` | ``GCCcore/10.2.0`` ``1.1.1k`` | ``GCCcore/10.3.0`` ``1.1.1k`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/o/OpenSceneGraph.md b/docs/version-specific/supported-software/o/OpenSceneGraph.md index 4ae4bb7256..8996d89257 100644 --- a/docs/version-specific/supported-software/o/OpenSceneGraph.md +++ b/docs/version-specific/supported-software/o/OpenSceneGraph.md @@ -4,7 +4,7 @@ search: --- # OpenSceneGraph -The OpenSceneGraph is an open source high performance 3D graphics toolkit, used by application developers in fields such as visual simulation, games, virtual reality, scientific visualization and modelling. Written entirely in Standard C++ and OpenGL it runs on all Windows platforms, OSX, GNU/Linux, IRIX, Solaris, HP-Ux, AIX and FreeBSD operating systems. The OpenSceneGraph is now well established as the world leading scene graph technology, used widely in the vis-sim, space, scientific, oil-gas, games and virtual reality industries. +The OpenSceneGraph is an open source high performance 3D graphics toolkit, used by application developers in fields such as visual simulation, games, virtual reality, scientific visualization and modelling. Written entirely in Standard C++ and OpenGL it runs on all Windows platforms, OSX, GNU/Linux, IRIX, Solaris, HP-Ux, AIX and FreeBSD operating systems. The OpenSceneGraph is now well established as the world leading scene graph technology, used widely in the vis-sim, space, scientific, oil-gas, games and virtual reality industries. *homepage*: diff --git a/docs/version-specific/supported-software/o/OpenSees.md b/docs/version-specific/supported-software/o/OpenSees.md deleted file mode 100644 index 301a049980..0000000000 --- a/docs/version-specific/supported-software/o/OpenSees.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# OpenSees - -Open System for Earthquake Engineering Simulation - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.2.0`` | ``-Python-3.8.2-parallel`` | ``intel/2020a`` -``3.2.0`` | ``-Python-3.8.2`` | ``intel/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/o/OpenSlide.md b/docs/version-specific/supported-software/o/OpenSlide.md index b00c86e80a..d8755425c2 100644 --- a/docs/version-specific/supported-software/o/OpenSlide.md +++ b/docs/version-specific/supported-software/o/OpenSlide.md @@ -15,8 +15,7 @@ version | versionsuffix | toolchain ``3.4.1`` | ``-largefiles`` | ``GCCcore/11.3.0`` ``3.4.1`` | ``-largefiles`` | ``GCCcore/12.2.0`` ``3.4.1`` | ``-largefiles`` | ``GCCcore/12.3.0`` -``3.4.1`` | ``-largefiles`` | ``GCCcore/8.2.0`` -``3.4.1`` | | ``GCCcore/8.2.0`` +``4.0.0`` | | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OpenStackClient.md b/docs/version-specific/supported-software/o/OpenStackClient.md index 4a446ca056..1325fd7621 100644 --- a/docs/version-specific/supported-software/o/OpenStackClient.md +++ b/docs/version-specific/supported-software/o/OpenStackClient.md @@ -4,7 +4,7 @@ search: --- # OpenStackClient -OpenStackClient (aka OSC) is a command-line client for OpenStack that brings the command set for Compute, Identity, Image, Network, Object Store and Block Storage APIs together in a single shell with a uniform command structure. +OpenStackClient (aka OSC) is a command-line client for OpenStack that brings the command set for Compute, Identity, Image, Network, Object Store and Block Storage APIs together in a single shell with a uniform command structure. *homepage*: diff --git a/docs/version-specific/supported-software/o/OptiType.md b/docs/version-specific/supported-software/o/OptiType.md deleted file mode 100644 index 9dc02d080c..0000000000 --- a/docs/version-specific/supported-software/o/OptiType.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# OptiType - -OptiType is a novel HLA genotyping algorithm based on integer linear programming, capable of producing accurate 4-digit HLA genotyping predictions from NGS data by simultaneously selecting all major and minor HLA Class I alleles. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.3.2`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.3.2`` | ``-Python-3.6.6`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/o/OptiX.md b/docs/version-specific/supported-software/o/OptiX.md index f64ec1e24a..de401a6d7c 100644 --- a/docs/version-specific/supported-software/o/OptiX.md +++ b/docs/version-specific/supported-software/o/OptiX.md @@ -10,8 +10,6 @@ OptiX is NVIDIA SDK for easy ray tracing performance. It provides a simple fram version | toolchain --------|---------- -``3.8.0`` | ``GNU/4.9.3-2.25`` -``3.9.0`` | ``GNU/4.9.3-2.25`` ``6.5.0`` | ``system`` ``7.2.0`` | ``system`` diff --git a/docs/version-specific/supported-software/o/Optuna.md b/docs/version-specific/supported-software/o/Optuna.md index 18c851a7e9..8255a41731 100644 --- a/docs/version-specific/supported-software/o/Optuna.md +++ b/docs/version-specific/supported-software/o/Optuna.md @@ -13,8 +13,10 @@ version | toolchain ``2.10.0`` | ``foss/2021b`` ``2.9.1`` | ``foss/2021a`` ``3.1.0`` | ``foss/2022a`` +``3.5.0`` | ``foss/2022b`` ``3.5.0`` | ``foss/2023a`` ``3.6.1`` | ``foss/2023b`` +``4.1.0`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OrfM.md b/docs/version-specific/supported-software/o/OrfM.md index b17258b447..9c4e9f91f3 100644 --- a/docs/version-specific/supported-software/o/OrfM.md +++ b/docs/version-specific/supported-software/o/OrfM.md @@ -4,15 +4,13 @@ search: --- # OrfM -A simple and not slow open reading frame (ORF) caller. No bells or whistles like frameshift detection, just a straightforward goal of returning a FASTA file of open reading frames over a certain length from a FASTA/Q file of nucleotide sequences. +A simple and not slow open reading frame (ORF) caller. *homepage*: version | toolchain --------|---------- -``0.6.1`` | ``foss/2016b`` ``0.7.1`` | ``GCC/12.3.0`` -``0.7.1`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OrthoFinder.md b/docs/version-specific/supported-software/o/OrthoFinder.md index 5f3c2142b8..a2aa512652 100644 --- a/docs/version-specific/supported-software/o/OrthoFinder.md +++ b/docs/version-specific/supported-software/o/OrthoFinder.md @@ -8,15 +8,11 @@ OrthoFinder is a fast, accurate and comprehensive platform for comparative genom *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.2.7`` | ``-Python-2.7.14`` | ``intel/2018a`` -``2.3.11`` | ``-Python-3.7.4`` | ``intel/2019b`` -``2.3.3`` | ``-Python-2.7.15`` | ``intel/2018b`` -``2.3.8`` | ``-Python-2.7.16`` | ``foss/2019b`` -``2.5.2`` | | ``foss/2020b`` -``2.5.4`` | | ``foss/2020b`` -``2.5.5`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``2.5.2`` | ``foss/2020b`` +``2.5.4`` | ``foss/2020b`` +``2.5.5`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OrthoMCL.md b/docs/version-specific/supported-software/o/OrthoMCL.md deleted file mode 100644 index edad604c77..0000000000 --- a/docs/version-specific/supported-software/o/OrthoMCL.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# OrthoMCL - -OrthoMCL is a genome-scale algorithm for grouping orthologous protein sequences. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.4`` | ``-Perl-5.24.0`` | ``intel/2016b`` -``2.0.9`` | ``-Perl-5.24.0`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/o/Osi.md b/docs/version-specific/supported-software/o/Osi.md index a76bdfe8f9..2d7929ce48 100644 --- a/docs/version-specific/supported-software/o/Osi.md +++ b/docs/version-specific/supported-software/o/Osi.md @@ -10,13 +10,13 @@ Osi (Open Solver Interface) provides an abstract base class to a generic linear version | toolchain --------|---------- -``0.108.5`` | ``GCCcore/7.3.0`` -``0.108.5`` | ``foss/2018b`` +``0.108.11`` | ``GCC/13.3.0`` ``0.108.6`` | ``GCC/10.3.0`` ``0.108.6`` | ``GCCcore/10.2.0`` ``0.108.7`` | ``GCC/11.2.0`` ``0.108.8`` | ``GCC/12.2.0`` ``0.108.9`` | ``GCC/12.3.0`` +``0.108.9`` | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/index.md b/docs/version-specific/supported-software/o/index.md index 24293b8cab..93339ce3a5 100644 --- a/docs/version-specific/supported-software/o/index.md +++ b/docs/version-specific/supported-software/o/index.md @@ -9,41 +9,37 @@ search: * [Oases](Oases.md) - * [OBITools](OBITools.md) * [OBITools3](OBITools3.md) * [OCaml](OCaml.md) * [ocamlbuild](ocamlbuild.md) * [occt](occt.md) * [oceanspy](oceanspy.md) - * [OCNet](OCNet.md) * [Octave](Octave.md) * [Octopus-vcf](Octopus-vcf.md) * [OGDF](OGDF.md) * [olaFlow](olaFlow.md) * [olego](olego.md) - * [OMA](OMA.md) + * [ollama](ollama.md) * [ome-types](ome-types.md) * [OmegaFold](OmegaFold.md) * [OMERO.insight](OMERO.insight.md) * [OMERO.py](OMERO.py.md) * [Omnipose](Omnipose.md) + * [omp](omp.md) * [onedrive](onedrive.md) * [ONNX](ONNX.md) * [ONNX-Runtime](ONNX-Runtime.md) * [ont-fast5-api](ont-fast5-api.md) * [ont-guppy](ont-guppy.md) * [ont-remora](ont-remora.md) - * [OOMPA](OOMPA.md) * [OPARI2](OPARI2.md) - * [Open-Data-Cube-Core](Open-Data-Cube-Core.md) + * [OPEN-SURFEX](OPEN-SURFEX.md) * [OpenAI-Gym](OpenAI-Gym.md) * [openai-python](openai-python.md) * [OpenBabel](OpenBabel.md) * [OpenBLAS](OpenBLAS.md) * [openCARP](openCARP.md) * [OpenCensus-python](OpenCensus-python.md) - * [OpenCoarrays](OpenCoarrays.md) - * [OpenColorIO](OpenColorIO.md) * [OpenCV](OpenCV.md) * [OpenEXR](OpenEXR.md) * [OpenFace](OpenFace.md) @@ -51,55 +47,44 @@ search: * [OpenFOAM](OpenFOAM.md) * [OpenFOAM-Extend](OpenFOAM-Extend.md) * [OpenFold](OpenFold.md) - * [OpenForceField](OpenForceField.md) * [OpenForceField-Toolkit](OpenForceField-Toolkit.md) * [OpenImageIO](OpenImageIO.md) * [OpenJPEG](OpenJPEG.md) - * [OpenKIM-API](OpenKIM-API.md) * [openkim-models](openkim-models.md) * [OpenMEEG](OpenMEEG.md) * [OpenMM](OpenMM.md) - * [OpenMM-PLUMED](OpenMM-PLUMED.md) + * [OpenMM-Torch](OpenMM-Torch.md) * [OpenMMTools](OpenMMTools.md) * [OpenMolcas](OpenMolcas.md) * [OpenMPI](OpenMPI.md) - * [OpenMS](OpenMS.md) - * [OpenNLP](OpenNLP.md) + * [OpenNMT-py](OpenNMT-py.md) * [OpenPGM](OpenPGM.md) - * [OpenPIV](OpenPIV.md) * [openpyxl](openpyxl.md) * [OpenRefine](OpenRefine.md) * [OpenSceneGraph](OpenSceneGraph.md) - * [OpenSees](OpenSees.md) * [OpenSlide](OpenSlide.md) * [OpenSlide-Java](OpenSlide-Java.md) * [openslide-python](openslide-python.md) * [OpenSSL](OpenSSL.md) * [OpenStackClient](OpenStackClient.md) - * [OPERA](OPERA.md) * [OPERA-MS](OPERA-MS.md) * [OptaDOS](OptaDOS.md) * [Optax](Optax.md) * [optiSLang](optiSLang.md) - * [OptiType](OptiType.md) * [OptiX](OptiX.md) + * [optree](optree.md) * [Optuna](Optuna.md) - * [OR-Tools](OR-Tools.md) * [ORCA](ORCA.md) - * [ORFfinder](ORFfinder.md) * [OrfM](OrfM.md) * [orjson](orjson.md) * [orthAgogue](orthAgogue.md) * [OrthoFinder](OrthoFinder.md) - * [OrthoMCL](OrthoMCL.md) * [Osi](Osi.md) * [OSPRay](OSPRay.md) * [OSU-Micro-Benchmarks](OSU-Micro-Benchmarks.md) * [OTF2](OTF2.md) * [OVITO](OVITO.md) - * [ownCloud](ownCloud.md) * [oxDNA](oxDNA.md) - * [oxford_asl](oxford_asl.md) *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - *o* - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/occt.md b/docs/version-specific/supported-software/o/occt.md index 1d7ea73aac..91e86d5ab3 100644 --- a/docs/version-specific/supported-software/o/occt.md +++ b/docs/version-specific/supported-software/o/occt.md @@ -10,7 +10,6 @@ Open CASCADE Technology (OCCT) is an object-oriented C++ class library designed version | toolchain --------|---------- -``7.3.0p4`` | ``foss/2019b`` ``7.5.0p1`` | ``foss/2021a`` ``7.5.0p1`` | ``foss/2022a`` ``7.8.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/o/oceanspy.md b/docs/version-specific/supported-software/o/oceanspy.md index 9558528434..589a585320 100644 --- a/docs/version-specific/supported-software/o/oceanspy.md +++ b/docs/version-specific/supported-software/o/oceanspy.md @@ -4,7 +4,7 @@ search: --- # oceanspy -OceanSpy - A Python package to facilitate ocean model data analysis and visualization. +OceanSpy - A Python package to facilitate ocean model data analysis and visualization. *homepage*: diff --git a/docs/version-specific/supported-software/o/ollama.md b/docs/version-specific/supported-software/o/ollama.md new file mode 100644 index 0000000000..7b614264d3 --- /dev/null +++ b/docs/version-specific/supported-software/o/ollama.md @@ -0,0 +1,20 @@ +--- +search: + boost: 0.5 +--- +# ollama + +Get up and running with large language models. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``0.5.12`` | ``-CUDA-12.6.0`` | ``GCCcore/13.3.0`` +``0.5.12`` | | ``GCCcore/13.3.0`` +``0.6.0`` | ``-CUDA-12.6.0`` | ``GCCcore/13.3.0`` +``0.6.0`` | | ``GCCcore/13.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/o/ome-types.md b/docs/version-specific/supported-software/o/ome-types.md index 0705c84157..05ab12af5a 100644 --- a/docs/version-specific/supported-software/o/ome-types.md +++ b/docs/version-specific/supported-software/o/ome-types.md @@ -4,7 +4,7 @@ search: --- # ome-types -ome_types provides a set of python dataclasses and utility functions for parsing the OME-XML format into fully-typed python objects for interactive or programmatic access in python. +ome_types provides a set of python dataclasses and utility functions for parsing the OME-XML format into fully-typed python objects for interactive or programmatic access in python. *homepage*: diff --git a/docs/version-specific/supported-software/c/Cargo.md b/docs/version-specific/supported-software/o/omp.md similarity index 85% rename from docs/version-specific/supported-software/c/Cargo.md rename to docs/version-specific/supported-software/o/omp.md index 39a663f553..3df59d1b5a 100644 --- a/docs/version-specific/supported-software/c/Cargo.md +++ b/docs/version-specific/supported-software/o/omp.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# Cargo +# omp -The Rust package manager +A parallel programming library. -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.13.0`` | ``foss/2016b`` +``1.0.0`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/ont-fast5-api.md b/docs/version-specific/supported-software/o/ont-fast5-api.md index ceff8516c3..cacb62d0f2 100644 --- a/docs/version-specific/supported-software/o/ont-fast5-api.md +++ b/docs/version-specific/supported-software/o/ont-fast5-api.md @@ -8,17 +8,16 @@ ont_fast5_api is a simple interface to HDF5 files of the Oxford Nanopore .fast5 *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.3.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``3.3.0`` | | ``foss/2020b`` -``3.3.0`` | | ``fosscuda/2020b`` -``4.0.0`` | | ``foss/2021a`` -``4.0.2`` | | ``foss/2021a`` -``4.0.2`` | | ``foss/2021b`` -``4.1.1`` | | ``foss/2022a`` -``4.1.1`` | | ``foss/2022b`` -``4.1.2`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``3.3.0`` | ``foss/2020b`` +``3.3.0`` | ``fosscuda/2020b`` +``4.0.0`` | ``foss/2021a`` +``4.0.2`` | ``foss/2021a`` +``4.0.2`` | ``foss/2021b`` +``4.1.1`` | ``foss/2022a`` +``4.1.1`` | ``foss/2022b`` +``4.1.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/ont-remora.md b/docs/version-specific/supported-software/o/ont-remora.md index dbb884a571..4e2a5d8759 100644 --- a/docs/version-specific/supported-software/o/ont-remora.md +++ b/docs/version-specific/supported-software/o/ont-remora.md @@ -14,6 +14,8 @@ version | versionsuffix | toolchain ``0.1.2`` | | ``foss/2021a`` ``1.0.0`` | ``-CUDA-11.3.1`` | ``foss/2021a`` ``1.0.0`` | | ``foss/2021a`` +``3.3.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``3.3.0`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/openCARP.md b/docs/version-specific/supported-software/o/openCARP.md index 2bc954f1c8..4aef4728d8 100644 --- a/docs/version-specific/supported-software/o/openCARP.md +++ b/docs/version-specific/supported-software/o/openCARP.md @@ -8,11 +8,10 @@ openCARP is an open cardiac electrophysiology simulator for in-silico experiment *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.2`` | ``-Python-3.8.2`` | ``foss/2020a`` -``6.0`` | | ``foss/2020b`` -``8.2`` | | ``foss/2021a`` +version | toolchain +--------|---------- +``6.0`` | ``foss/2020b`` +``8.2`` | ``foss/2021a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/openai-python.md b/docs/version-specific/supported-software/o/openai-python.md index a894e5b960..c2caf36901 100644 --- a/docs/version-specific/supported-software/o/openai-python.md +++ b/docs/version-specific/supported-software/o/openai-python.md @@ -11,6 +11,7 @@ The OpenAI Python library provides convenient access to the OpenAI REST API from version | toolchain --------|---------- ``1.30.5`` | ``foss/2023a`` +``1.39.0`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/openkim-models.md b/docs/version-specific/supported-software/o/openkim-models.md index fd393411e1..d58109bc27 100644 --- a/docs/version-specific/supported-software/o/openkim-models.md +++ b/docs/version-specific/supported-software/o/openkim-models.md @@ -11,10 +11,6 @@ Open Knowledgebase of Interatomic Models. OpenKIM is an API and a collection of version | toolchain --------|---------- ``20190725`` | ``GCC/10.2.0`` -``20190725`` | ``foss/2019a`` -``20190725`` | ``foss/2019b`` -``20190725`` | ``intel/2019a`` -``20190725`` | ``intel/2019b`` ``20210128`` | ``GCC/10.2.0`` ``20210811`` | ``GCC/12.3.0`` ``20210811`` | ``intel-compilers/2023.1.0`` diff --git a/docs/version-specific/supported-software/o/openpyxl.md b/docs/version-specific/supported-software/o/openpyxl.md index 4ba1ba8cf3..688d1cf855 100644 --- a/docs/version-specific/supported-software/o/openpyxl.md +++ b/docs/version-specific/supported-software/o/openpyxl.md @@ -8,18 +8,16 @@ A Python library to read/write Excel 2010 xlsx/xlsm files *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.6.2`` | | ``GCCcore/8.2.0`` -``2.6.4`` | ``-Python-2.7.16`` | ``GCCcore/8.3.0`` -``3.0.10`` | | ``GCCcore/11.3.0`` -``3.0.3`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``3.0.7`` | | ``GCCcore/10.2.0`` -``3.0.7`` | | ``GCCcore/10.3.0`` -``3.0.9`` | | ``GCCcore/11.2.0`` -``3.1.2`` | | ``GCCcore/12.2.0`` -``3.1.2`` | | ``GCCcore/12.3.0`` -``3.1.2`` | | ``GCCcore/13.2.0`` +version | toolchain +--------|---------- +``3.0.10`` | ``GCCcore/11.3.0`` +``3.0.7`` | ``GCCcore/10.2.0`` +``3.0.7`` | ``GCCcore/10.3.0`` +``3.0.9`` | ``GCCcore/11.2.0`` +``3.1.2`` | ``GCCcore/12.2.0`` +``3.1.2`` | ``GCCcore/12.3.0`` +``3.1.2`` | ``GCCcore/13.2.0`` +``3.1.5`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/openslide-python.md b/docs/version-specific/supported-software/o/openslide-python.md index 7c69333cd3..87d6591990 100644 --- a/docs/version-specific/supported-software/o/openslide-python.md +++ b/docs/version-specific/supported-software/o/openslide-python.md @@ -10,12 +10,12 @@ OpenSlide Python is a Python interface to the OpenSlide library. version | toolchain --------|---------- -``1.1.1`` | ``GCCcore/8.2.0`` ``1.1.2`` | ``GCCcore/10.3.0`` ``1.1.2`` | ``GCCcore/11.2.0`` ``1.2.0`` | ``GCCcore/11.3.0`` ``1.3.1`` | ``GCCcore/12.2.0`` ``1.3.1`` | ``GCCcore/12.3.0`` +``1.4.1`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/optiSLang.md b/docs/version-specific/supported-software/o/optiSLang.md index 23ddb34d7b..e633b3787d 100644 --- a/docs/version-specific/supported-software/o/optiSLang.md +++ b/docs/version-specific/supported-software/o/optiSLang.md @@ -4,7 +4,7 @@ search: --- # optiSLang -Ansys optiSLang is a constantly evolving, leading-edge answer to the challenges posed by CAE-based Robust Design Optimization (RDO). Its state-of-the-art algorithms efficiently and automatically search for the most robust design configuration, eliminating the slow, manual process that used to define RDO. +Ansys optiSLang is a constantly evolving, leading-edge answer to the challenges posed by CAE-based Robust Design Optimization (RDO). Its state-of-the-art algorithms efficiently and automatically search for the most robust design configuration, eliminating the slow, manual process that used to define RDO. *homepage*: diff --git a/docs/version-specific/supported-software/o/optree.md b/docs/version-specific/supported-software/o/optree.md new file mode 100644 index 0000000000..3d580ab0ce --- /dev/null +++ b/docs/version-specific/supported-software/o/optree.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# optree + +Optimized PyTree Utilities + +*homepage*: + +version | toolchain +--------|---------- +``0.11.0`` | ``GCCcore/12.3.0`` +``0.13.0`` | ``GCCcore/13.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/o/orjson.md b/docs/version-specific/supported-software/o/orjson.md index 2fdac0a73e..a9775adb57 100644 --- a/docs/version-specific/supported-software/o/orjson.md +++ b/docs/version-specific/supported-software/o/orjson.md @@ -10,6 +10,7 @@ Fast, correct Python JSON library supporting dataclasses, datetimes, and numpy. version | toolchain --------|---------- +``3.10.10`` | ``GCCcore/13.2.0`` ``3.9.15`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/o/ownCloud.md b/docs/version-specific/supported-software/o/ownCloud.md deleted file mode 100644 index 3c97d732f0..0000000000 --- a/docs/version-specific/supported-software/o/ownCloud.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ownCloud - -The ownCloud Desktop Client is a tool to synchronize files from ownCloud Server with your computer. - -*homepage*: - -version | toolchain ---------|---------- -``2.4.3`` | ``foss/2018b`` -``2.5.4`` | ``GCCcore/8.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/o/oxford_asl.md b/docs/version-specific/supported-software/o/oxford_asl.md deleted file mode 100644 index 7e2184b44c..0000000000 --- a/docs/version-specific/supported-software/o/oxford_asl.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# oxford_asl - -A command line tool for quantification of perfusion from ASL data - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.9.6`` | ``-centos7-Python-2.7.13`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PALM.md b/docs/version-specific/supported-software/p/PALM.md new file mode 100644 index 0000000000..f6510ebcf9 --- /dev/null +++ b/docs/version-specific/supported-software/p/PALM.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# PALM + +PALM is an advanced and state-of-the-art meteorological modeling system for atmospheric and oceanic boundary layer flows. + +*homepage*: + +version | toolchain +--------|---------- +``23.10`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/PAML.md b/docs/version-specific/supported-software/p/PAML.md index 2e889efc87..fab8bb3b74 100644 --- a/docs/version-specific/supported-software/p/PAML.md +++ b/docs/version-specific/supported-software/p/PAML.md @@ -11,12 +11,9 @@ PAML is a package of programs for phylogenetic analyses of DNA or protein seque version | toolchain --------|---------- ``4.10.5`` | ``GCCcore/11.3.0`` -``4.9i`` | ``GCC/6.4.0-2.28`` -``4.9i`` | ``iccifort/2017.4.196-GCC-6.4.0-2.28`` ``4.9j`` | ``GCCcore/10.2.0`` ``4.9j`` | ``GCCcore/10.3.0`` ``4.9j`` | ``GCCcore/11.2.0`` -``4.9j`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PANDAseq.md b/docs/version-specific/supported-software/p/PANDAseq.md deleted file mode 100644 index 088b8affe8..0000000000 --- a/docs/version-specific/supported-software/p/PANDAseq.md +++ /dev/null @@ -1,21 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PANDAseq - -PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. - -*homepage*: - -version | toolchain ---------|---------- -``2.10`` | ``GCC/5.4.0-2.26`` -``2.10`` | ``iccifort/2016.3.210-GCC-5.4.0-2.26`` -``2.11`` | ``foss/2017b`` -``2.11`` | ``intel/2017b`` -``2.11`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PAPI.md b/docs/version-specific/supported-software/p/PAPI.md index 57d0c43333..67d7749ee0 100644 --- a/docs/version-specific/supported-software/p/PAPI.md +++ b/docs/version-specific/supported-software/p/PAPI.md @@ -4,21 +4,13 @@ search: --- # PAPI -PAPI provides the tool designer and application engineer with a consistent interface and methodology for use of the performance counter hardware found in most major microprocessors. PAPI enables software engineers to see, in near real time, the relation between software performance and processor events. In addition Component PAPI provides access to a collection of components that expose performance measurement opportunites across the hardware and software stack. +PAPI provides the tool designer and application engineer with a consistent interface and methodology for use of the performance counter hardware found in most major microprocessors. PAPI enables software engineers to see, in near real time, the relation between software performance and processor events. In addition Component PAPI provides access to a collection of components that expose performance measurement opportunites across the hardware and software stack. -*homepage*: +*homepage*: version | toolchain --------|---------- -``5.4.3`` | ``foss/2016a`` -``5.5.1`` | ``GCCcore/6.3.0`` -``5.5.1`` | ``GCCcore/6.4.0`` -``5.6.0`` | ``GCCcore/6.4.0`` -``5.7.0`` | ``GCCcore/7.3.0`` -``5.7.0`` | ``GCCcore/8.2.0`` ``6.0.0`` | ``GCCcore/10.2.0`` -``6.0.0`` | ``GCCcore/8.3.0`` -``6.0.0`` | ``GCCcore/9.3.0`` ``6.0.0.1`` | ``GCCcore/10.3.0`` ``6.0.0.1`` | ``GCCcore/11.2.0`` ``7.0.0`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/p/PARI-GP.md b/docs/version-specific/supported-software/p/PARI-GP.md index 03b0b4cc3e..b997a11c48 100644 --- a/docs/version-specific/supported-software/p/PARI-GP.md +++ b/docs/version-specific/supported-software/p/PARI-GP.md @@ -12,7 +12,6 @@ version | toolchain --------|---------- ``2.15.4`` | ``GCCcore/11.3.0`` ``2.15.5`` | ``GCCcore/13.2.0`` -``2.7.6`` | ``foss/2016a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PASA.md b/docs/version-specific/supported-software/p/PASA.md index 4034ca2123..ca347ec326 100644 --- a/docs/version-specific/supported-software/p/PASA.md +++ b/docs/version-specific/supported-software/p/PASA.md @@ -11,6 +11,7 @@ PASA, acronym for Program to Assemble Spliced Alignments (and pronounced 'pass-u version | toolchain --------|---------- ``2.5.3`` | ``foss/2022b`` +``2.5.3`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PBSuite.md b/docs/version-specific/supported-software/p/PBSuite.md deleted file mode 100644 index 7afe20bb26..0000000000 --- a/docs/version-specific/supported-software/p/PBSuite.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PBSuite - -PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``15.8.24`` | ``-Python-2.7.12`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PBZIP2.md b/docs/version-specific/supported-software/p/PBZIP2.md index 17c9a23a69..93c127c4a7 100644 --- a/docs/version-specific/supported-software/p/PBZIP2.md +++ b/docs/version-specific/supported-software/p/PBZIP2.md @@ -4,7 +4,7 @@ search: --- # PBZIP2 -PBZIP2 is a parallel implementation of the bzip2 block-sorting file compressor that uses pthreads and achieves near-linear speedup on SMP machines. The output of this version is fully compatible with bzip2 v1.0.2 or newer (ie: anything compressed with pbzip2 can be decompressed with bzip2). PBZIP2 should work on any system that has a pthreads compatible C++ compiler (such as gcc). It has been tested on: Linux, Windows (cygwin & MinGW), Solaris, Tru64/OSF1, HP-UX, OS/2, OSX, and Irix. +PBZIP2 is a parallel implementation of the bzip2 block-sorting file compressor that uses pthreads and achieves near-linear speedup on SMP machines. The output of this version is fully compatible with bzip2 v1.0.2 or newer (ie: anything compressed with pbzip2 can be decompressed with bzip2). PBZIP2 should work on any system that has a pthreads compatible C++ compiler (such as gcc). It has been tested on: Linux, Windows (cygwin & MinGW), Solaris, Tru64/OSF1, HP-UX, OS/2, OSX, and Irix. *homepage*: diff --git a/docs/version-specific/supported-software/p/PCAngsd.md b/docs/version-specific/supported-software/p/PCAngsd.md index a79714c9a7..030dc580be 100644 --- a/docs/version-specific/supported-software/p/PCAngsd.md +++ b/docs/version-specific/supported-software/p/PCAngsd.md @@ -4,14 +4,13 @@ search: --- # PCAngsd -PCAngsd, which estimates the covariance matrix for low depth NGS data in an iterative procedure based on genotype likelihoods and is able to perform multiple population genetic analyses in heterogeneous populations. +Framework for analyzing low depth NGS data in heterogeneous populations using PCA. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.97`` | ``-Python-2.7.14`` | ``foss/2018a`` -``1.2`` | | ``gfbf/2023a`` +version | toolchain +--------|---------- +``1.2`` | ``gfbf/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PCC.md b/docs/version-specific/supported-software/p/PCC.md deleted file mode 100644 index f89711aaf2..0000000000 --- a/docs/version-specific/supported-software/p/PCC.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PCC - -The compiler is based on the original Portable C Compiler by S. C. Johnson, written in the late 70's. About 50% of the frontend code and 80% of the backend code has been modified. - -*homepage*: - -version | toolchain ---------|---------- -``20131024`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PCL.md b/docs/version-specific/supported-software/p/PCL.md index 72fa3e0478..0cbcd26a7b 100644 --- a/docs/version-specific/supported-software/p/PCL.md +++ b/docs/version-specific/supported-software/p/PCL.md @@ -6,12 +6,11 @@ search: The Point Cloud Library (PCL) is a standalone, large scale, open project for 2D/3D image and point cloud processing. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.7.2`` | ``-Python-2.7.11`` | ``intel/2016a`` -``1.8.1`` | ``-Python-2.7.14`` | ``intel/2017b`` +version | toolchain +--------|---------- +``1.14.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PCMSolver.md b/docs/version-specific/supported-software/p/PCMSolver.md index 74ba078a99..7ae01bff09 100644 --- a/docs/version-specific/supported-software/p/PCMSolver.md +++ b/docs/version-specific/supported-software/p/PCMSolver.md @@ -8,14 +8,9 @@ An API for the Polarizable Continuum Model. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.4`` | ``-Python-2.7.11`` | ``intel/2016a`` -``1.2.3`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.2.3`` | ``-Python-3.7.2`` | ``gompi/2019a`` -``1.2.3`` | ``-Python-3.7.4`` | ``iimpi/2019b`` -``1.2.3`` | | ``iimpi/2020b`` -``20160205`` | ``-Python-2.7.11`` | ``intel/2016a`` +version | toolchain +--------|---------- +``1.2.3`` | ``iimpi/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PCRE.md b/docs/version-specific/supported-software/p/PCRE.md index acfb6077b6..ef5e2e60cd 100644 --- a/docs/version-specific/supported-software/p/PCRE.md +++ b/docs/version-specific/supported-software/p/PCRE.md @@ -4,38 +4,20 @@ search: --- # PCRE -The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5. +The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5. -*homepage*: +*homepage*: version | toolchain --------|---------- -``8.38`` | ``foss/2016a`` -``8.38`` | ``foss/2016b`` -``8.38`` | ``gimkl/2.11.5`` -``8.38`` | ``intel/2016a`` -``8.38`` | ``intel/2016b`` -``8.39`` | ``GCCcore/5.4.0`` -``8.39`` | ``foss/2016b`` -``8.39`` | ``intel/2016b`` -``8.40`` | ``GCCcore/6.3.0`` -``8.40`` | ``gimkl/2017a`` -``8.40`` | ``intel/2016b`` -``8.40`` | ``intel/2017a`` -``8.41`` | ``GCCcore/6.3.0`` -``8.41`` | ``GCCcore/6.4.0`` -``8.41`` | ``GCCcore/7.3.0`` -``8.42`` | ``GCCcore/6.4.0`` -``8.43`` | ``GCCcore/8.2.0`` -``8.43`` | ``GCCcore/8.3.0`` ``8.44`` | ``GCCcore/10.2.0`` ``8.44`` | ``GCCcore/10.3.0`` -``8.44`` | ``GCCcore/9.3.0`` ``8.45`` | ``GCCcore/11.2.0`` ``8.45`` | ``GCCcore/11.3.0`` ``8.45`` | ``GCCcore/12.2.0`` ``8.45`` | ``GCCcore/12.3.0`` ``8.45`` | ``GCCcore/13.2.0`` +``8.45`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PCRE2.md b/docs/version-specific/supported-software/p/PCRE2.md index 4ec1e38f64..90c6b9d713 100644 --- a/docs/version-specific/supported-software/p/PCRE2.md +++ b/docs/version-specific/supported-software/p/PCRE2.md @@ -6,15 +6,10 @@ search: The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5. -*homepage*: +*homepage*: version | toolchain --------|---------- -``10.21`` | ``foss/2016a`` -``10.31`` | ``foss/2018b`` -``10.33`` | ``GCCcore/8.2.0`` -``10.33`` | ``GCCcore/8.3.0`` -``10.34`` | ``GCCcore/9.3.0`` ``10.35`` | ``GCCcore/10.2.0`` ``10.36`` | ``GCCcore/10.3.0`` ``10.37`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/p/PCRaster.md b/docs/version-specific/supported-software/p/PCRaster.md deleted file mode 100644 index 270c3b5f40..0000000000 --- a/docs/version-specific/supported-software/p/PCRaster.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PCRaster - -PCRaster Is a collection of software targeted at the development and deployment of spatio-temporal environmental models. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``4.1.0`` | ``-Python-2.7.14`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PDAL.md b/docs/version-specific/supported-software/p/PDAL.md new file mode 100644 index 0000000000..f39bd382cc --- /dev/null +++ b/docs/version-specific/supported-software/p/PDAL.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# PDAL + +PDAL is Point Data Abstraction Library. It is a C/C++ open source library and applications for translating and processing point cloud data. It is not limited to LiDAR data, although the focus and impetus for many of the tools in the library have their origins in LiDAR. + +*homepage*: + +version | toolchain +--------|---------- +``2.8.2`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/PDM.md b/docs/version-specific/supported-software/p/PDM.md index 390a4da054..9bd5c46bec 100644 --- a/docs/version-specific/supported-software/p/PDM.md +++ b/docs/version-specific/supported-software/p/PDM.md @@ -11,6 +11,8 @@ A modern Python package and dependency manager supporting the latest PEP standar version | toolchain --------|---------- ``2.12.4`` | ``GCCcore/12.3.0`` +``2.18.2`` | ``GCCcore/13.2.0`` +``2.18.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PDT.md b/docs/version-specific/supported-software/p/PDT.md index 5025d3431e..ba4e738a34 100644 --- a/docs/version-specific/supported-software/p/PDT.md +++ b/docs/version-specific/supported-software/p/PDT.md @@ -4,22 +4,18 @@ search: --- # PDT -Program Database Toolkit (PDT) is a framework for analyzing source code written in several programming languages and for making rich program knowledge accessible to developers of static and dynamic analysis tools. PDT implements a standard program representation, the program database (PDB), that can be accessed in a uniform way through a class library supporting common PDB operations. +Program Database Toolkit (PDT) is a framework for analyzing source code written in several programming languages and for making rich program knowledge accessible to developers of static and dynamic analysis tools. PDT implements a standard program representation, the program database (PDB), that can be accessed in a uniform way through a class library supporting common PDB operations. -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.22`` | ``foss/2016a`` ``3.25`` | ``GCCcore/10.2.0`` -``3.25`` | ``GCCcore/8.2.0`` -``3.25`` | ``GCCcore/8.3.0`` ``3.25.1`` | ``GCCcore/10.3.0`` ``3.25.1`` | ``GCCcore/11.2.0`` ``3.25.1`` | ``GCCcore/11.3.0`` ``3.25.1`` | ``GCCcore/12.2.0`` ``3.25.1`` | ``GCCcore/12.3.0`` -``3.25.1`` | ``GCCcore/9.3.0`` ``3.25.2`` | ``GCCcore/13.2.0`` ``3.25.2`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/p/PEAR.md b/docs/version-specific/supported-software/p/PEAR.md index 280610e2c0..edaeb6ff0f 100644 --- a/docs/version-specific/supported-software/p/PEAR.md +++ b/docs/version-specific/supported-software/p/PEAR.md @@ -4,22 +4,15 @@ search: --- # PEAR -PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory. +PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory. -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.9.10`` | ``GCC/6.4.0-2.28`` -``0.9.10`` | ``iccifort/2017.4.196-GCC-6.4.0-2.28`` ``0.9.11`` | ``GCC/10.3.0`` ``0.9.11`` | ``GCC/11.2.0`` ``0.9.11`` | ``GCC/11.3.0`` -``0.9.11`` | ``GCCcore/7.3.0`` -``0.9.11`` | ``GCCcore/9.3.0`` -``0.9.11`` | ``foss/2018a`` -``0.9.8`` | ``foss/2016b`` -``0.9.8`` | ``intel/2016b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PEST++.md b/docs/version-specific/supported-software/p/PEST++.md deleted file mode 100644 index f0d8ea82a7..0000000000 --- a/docs/version-specific/supported-software/p/PEST++.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PEST++ - -PEST++ is a software suite aimed at supporting complex numerical models in the decision-support context. Much focus has been devoted to supporting environmental models (groundwater, surface water, etc) but these tools are readily applicable to any computer model. - -*homepage*: - -version | toolchain ---------|---------- -``5.0.5`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PETSc.md b/docs/version-specific/supported-software/p/PETSc.md index ae363a8abe..c0db9f11c7 100644 --- a/docs/version-specific/supported-software/p/PETSc.md +++ b/docs/version-specific/supported-software/p/PETSc.md @@ -8,31 +8,16 @@ PETSc, pronounced PET-see (the S is silent), is a suite of data structures and r *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.11.0`` | ``-downloaded-deps`` | ``foss/2018b`` -``3.11.1`` | ``-Python-3.7.2`` | ``foss/2019a`` -``3.11.1`` | ``-Python-3.7.2`` | ``intel/2019a`` -``3.12.4`` | ``-Python-3.7.4`` | ``foss/2019b`` -``3.12.4`` | ``-Python-3.8.2`` | ``foss/2020a`` -``3.12.4`` | ``-Python-2.7.16`` | ``intel/2019b`` -``3.12.4`` | ``-Python-3.7.4`` | ``intel/2019b`` -``3.12.4`` | ``-Python-3.8.2`` | ``intel/2020a`` -``3.14.4`` | | ``foss/2020b`` -``3.14.4`` | | ``intel/2020b`` -``3.15.1`` | | ``foss/2021a`` -``3.15.1`` | | ``intel/2021a`` -``3.17.4`` | | ``foss/2022a`` -``3.18.4`` | | ``intel/2021b`` -``3.19.2`` | | ``foss/2022b`` -``3.20.3`` | | ``foss/2023a`` -``3.7.2`` | ``-Python-2.7.11`` | ``intel/2016a`` -``3.7.3`` | ``-Python-2.7.11`` | ``foss/2016a`` -``3.7.5`` | ``-downloaded-deps`` | ``intel/2016b`` -``3.8.3`` | ``-downloaded-deps`` | ``foss/2017b`` -``3.9.1`` | ``-downloaded-deps`` | ``foss/2018a`` -``3.9.3`` | | ``foss/2018a`` -``3.9.3`` | | ``intel/2018a`` +version | toolchain +--------|---------- +``3.14.4`` | ``foss/2020b`` +``3.14.4`` | ``intel/2020b`` +``3.15.1`` | ``foss/2021a`` +``3.15.1`` | ``intel/2021a`` +``3.17.4`` | ``foss/2022a`` +``3.18.4`` | ``intel/2021b`` +``3.19.2`` | ``foss/2022b`` +``3.20.3`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PGDSpider.md b/docs/version-specific/supported-software/p/PGDSpider.md deleted file mode 100644 index 6ca7f89595..0000000000 --- a/docs/version-specific/supported-software/p/PGDSpider.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PGDSpider - -An automated data conversion tool for connecting population genetics and genomics programs - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1.0.3`` | ``-Java-1.7.0_80`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PGI.md b/docs/version-specific/supported-software/p/PGI.md deleted file mode 100644 index 3a598c62cb..0000000000 --- a/docs/version-specific/supported-software/p/PGI.md +++ /dev/null @@ -1,36 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PGI - -C, C++ and Fortran compilers from The Portland Group - PGI - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``15.10`` | ``-GCC-4.9.3-2.25`` | ``system`` -``15.7`` | ``-GNU-4.9.2-2.25`` | ``system`` -``15.7`` | ``-GNU-4.9.3-2.25`` | ``system`` -``16.1`` | ``-CDK-GCC-4.9.2-2.25`` | ``system`` -``16.10`` | ``-GCC-5.4.0-2.26`` | ``system`` -``16.3`` | ``-GCC-4.9.3-2.25`` | ``system`` -``16.4`` | ``-GCC-5.3.0-2.26`` | ``system`` -``16.7`` | ``-GCC-5.4.0-2.26`` | ``system`` -``17.1`` | ``-GCC-6.3.0-2.27`` | ``system`` -``17.10`` | ``-GCC-6.4.0-2.28`` | ``system`` -``17.3`` | ``-GCC-6.3.0-2.28`` | ``system`` -``17.4`` | ``-GCC-6.4.0-2.28`` | ``system`` -``18.1`` | ``-GCC-7.2.0-2.29`` | ``system`` -``18.10`` | ``-GCC-6.4.0-2.28`` | ``system`` -``18.4`` | ``-GCC-6.4.0-2.28`` | ``system`` -``18.7`` | ``-GCC-7.3.0-2.30`` | ``system`` -``19.1`` | ``-GCC-8.2.0-2.31.1`` | ``system`` -``19.10`` | ``-GCC-8.3.0-2.32`` | ``system`` -``19.4`` | ``-GCC-8.2.0-2.31.1`` | ``system`` -``19.7`` | ``-GCC-8.3.0-2.32`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PGPLOT.md b/docs/version-specific/supported-software/p/PGPLOT.md index ab5007dbd7..0346ffef8e 100644 --- a/docs/version-specific/supported-software/p/PGPLOT.md +++ b/docs/version-specific/supported-software/p/PGPLOT.md @@ -4,7 +4,7 @@ search: --- # PGPLOT -The PGPLOT Graphics Subroutine Library is a Fortran- or C-callable, device-independent graphics package for making simple scientific graphs. It is intended for making graphical images of publication quality with minimum effort on the part of the user. For most applications, the program can be device-independent, and the output can be directed to the appropriate device at run time. +The PGPLOT Graphics Subroutine Library is a Fortran- or C-callable, device-independent graphics package for making simple scientific graphs. It is intended for making graphical images of publication quality with minimum effort on the part of the user. For most applications, the program can be device-independent, and the output can be directed to the appropriate device at run time. *homepage*: diff --git a/docs/version-specific/supported-software/p/PHANOTATE.md b/docs/version-specific/supported-software/p/PHANOTATE.md deleted file mode 100644 index a872d70a40..0000000000 --- a/docs/version-specific/supported-software/p/PHANOTATE.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PHANOTATE - -PHANOTATE: a tool to annotate phage genomes - -*homepage*: - -version | toolchain ---------|---------- -``20190724`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PHASE.md b/docs/version-specific/supported-software/p/PHASE.md deleted file mode 100644 index 3235252505..0000000000 --- a/docs/version-specific/supported-software/p/PHASE.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PHASE - -The program PHASE implements a Bayesian statistical method for reconstructing haplotypes from population genotype data. Documentation: http://stephenslab.uchicago.edu/assets/software/phase/instruct2.1.pdf - -*homepage*: - -version | toolchain ---------|---------- -``2.1.1`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PHAST.md b/docs/version-specific/supported-software/p/PHAST.md deleted file mode 100644 index d62468a94e..0000000000 --- a/docs/version-specific/supported-software/p/PHAST.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PHAST - -PHAST is a freely available software package for comparative and evolutionary genomics. - -*homepage*: - -version | toolchain ---------|---------- -``1.4`` | ``intel/2017a`` -``1.5`` | ``GCC/6.4.0-2.28`` -``1.5`` | ``iccifort/2017.4.196-GCC-6.4.0-2.28`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PHLAT.md b/docs/version-specific/supported-software/p/PHLAT.md deleted file mode 100644 index 2e07a23049..0000000000 --- a/docs/version-specific/supported-software/p/PHLAT.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PHLAT - -PHLAT is a bioinformatics algorithm that offers HLA typing at four-digit resolution (or higher) using genome-wide transcriptome and exome sequencing data over a wide range of read lengths and sequencing depths. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1`` | ``-Python-2.7.15`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PHYLIP.md b/docs/version-specific/supported-software/p/PHYLIP.md index f4039ba4b0..59f62dac5e 100644 --- a/docs/version-specific/supported-software/p/PHYLIP.md +++ b/docs/version-specific/supported-software/p/PHYLIP.md @@ -6,16 +6,11 @@ search: PHYLIP is a free package of programs for inferring phylogenies. -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.696`` | ``foss/2016a`` -``3.696`` | ``intel/2016a`` ``3.697`` | ``GCC/12.3.0`` -``3.697`` | ``GCC/6.4.0-2.28`` -``3.697`` | ``GCC/9.3.0`` -``3.697`` | ``iccifort/2017.4.196-GCC-6.4.0-2.28`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PIL.md b/docs/version-specific/supported-software/p/PIL.md deleted file mode 100644 index 1ac49dc743..0000000000 --- a/docs/version-specific/supported-software/p/PIL.md +++ /dev/null @@ -1,22 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PIL - -The Python Imaging Library (PIL) adds image processing capabilities to your Python interpreter. This library supports many file formats, and provides powerful image processing and graphics capabilities. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.7`` | ``-Python-2.7.12`` | ``foss/2016b`` -``1.1.7`` | ``-Python-2.7.15`` | ``foss/2019a`` -``1.1.7`` | ``-Python-2.7.11-freetype-2.6.3`` | ``intel/2016a`` -``1.1.7`` | ``-Python-2.7.11`` | ``intel/2016a`` -``1.1.7`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.1.7`` | ``-Python-2.7.13`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PIMS.md b/docs/version-specific/supported-software/p/PIMS.md deleted file mode 100644 index 92420f8a9c..0000000000 --- a/docs/version-specific/supported-software/p/PIMS.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PIMS - -PIMS is a lazy-loading interface to sequential data with numpy-like slicing. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.4.1`` | ``-Python-2.7.14`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PIPITS.md b/docs/version-specific/supported-software/p/PIPITS.md index eb9d7a4761..6b785804da 100644 --- a/docs/version-specific/supported-software/p/PIPITS.md +++ b/docs/version-specific/supported-software/p/PIPITS.md @@ -4,16 +4,15 @@ search: --- # PIPITS -An automated pipeline for analyses of fungal internal transcribed spacer (ITS) sequences from the Illumina sequencing platform. +An automated pipeline for analyses of fungal internal transcribed spacer (ITS) sequences from the Illumina sequencing platform. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.7`` | ``-Python-3.8.2`` | ``foss/2020a`` -``2.8`` | | ``foss/2021a`` -``3.0`` | | ``foss/2021a`` -``3.0`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``2.8`` | ``foss/2021a`` +``3.0`` | ``foss/2021a`` +``3.0`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PLAST.md b/docs/version-specific/supported-software/p/PLAST.md deleted file mode 100644 index 8a908b7809..0000000000 --- a/docs/version-specific/supported-software/p/PLAST.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PLAST - -PLAST is a parallel alignment search tool for comparing large protein banks - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.3.1`` | ``-Java-1.8.0_92`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PLINK.md b/docs/version-specific/supported-software/p/PLINK.md index 4b3a36ee32..108f2993e6 100644 --- a/docs/version-specific/supported-software/p/PLINK.md +++ b/docs/version-specific/supported-software/p/PLINK.md @@ -4,23 +4,15 @@ search: --- # PLINK -PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. The focus of PLINK is purely on analysis of genotype/phenotype data, so there is no support for steps prior to this (e.g. study design and planning, generating genotype or CNV calls from raw data). Through integration with gPLINK and Haploview, there is some support for the subsequent visualization, annotation and storage of results. +plink-1.9-x86_64: Whole-genome association analysis toolset -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.07`` | ``foss/2016a`` -``1.07`` | ``foss/2016b`` -``1.07-x86_64`` | ``system`` ``1.90-beta-7.4-x86_64`` | ``system`` -``1.9b5`` | ``golf/2020a`` -``1.9b_4.1-x86_64`` | ``system`` ``1.9b_6.17-x86_64`` | ``system`` ``1.9b_6.21-x86_64`` | ``system`` -``2.00-alpha1-x86_64`` | ``system`` -``2.00-alpha2-x86_64`` | ``system`` -``2.00-alpha2-x86_64_avx2`` | ``system`` ``2.00a2.3`` | ``GCC/10.3.0`` ``2.00a2.3`` | ``GCC/11.2.0`` ``2.00a2.3_x86_64`` | ``system`` diff --git a/docs/version-specific/supported-software/p/PLINKSEQ.md b/docs/version-specific/supported-software/p/PLINKSEQ.md deleted file mode 100644 index 2b204164b6..0000000000 --- a/docs/version-specific/supported-software/p/PLINKSEQ.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PLINKSEQ - -PLINK/SEQ is an open-source C/C++ library for working with human genetic variation data. The specific focus is to provide a platform for analytic tool development for variation data from large-scale resequencing and genotyping projects, particularly whole-exome and whole-genome studies. It is independent of (but designed to be complementary to) the existing PLINK package. - -*homepage*: - -version | toolchain ---------|---------- -``0.10`` | ``GCC/6.4.0-2.28`` -``0.10`` | ``iccifort/2017.4.196-GCC-6.4.0-2.28`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PLUMED.md b/docs/version-specific/supported-software/p/PLUMED.md index 002603b943..c6718ebe07 100644 --- a/docs/version-specific/supported-software/p/PLUMED.md +++ b/docs/version-specific/supported-software/p/PLUMED.md @@ -4,50 +4,23 @@ search: --- # PLUMED -PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes. +PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.2.2`` | | ``intel/2016a`` -``2.2.3`` | | ``foss/2016b`` -``2.2.3`` | | ``intel/2016b`` -``2.3.0`` | | ``foss/2016b`` -``2.3.0`` | | ``foss/2017a`` -``2.3.0`` | | ``intel/2016b`` -``2.3.4`` | | ``intel/2017b`` -``2.4.0`` | | ``foss/2018a`` -``2.4.0`` | | ``intel/2017b`` -``2.4.0`` | ``-PathCV`` | ``intel/2018a`` -``2.4.0`` | | ``intel/2018a`` -``2.4.1`` | | ``iomkl/2018a`` -``2.4.2`` | | ``foss/2018b`` -``2.4.2`` | | ``intel/2018b`` -``2.5.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``2.5.0`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` -``2.5.0`` | | ``intel/2018b`` -``2.5.1`` | | ``foss/2019a`` -``2.5.1`` | ``-PathCV`` | ``intel/2018b`` -``2.5.1`` | | ``intel/2018b`` -``2.5.2`` | ``-Python-3.7.2`` | ``intel/2019a`` -``2.5.3`` | ``-Python-3.7.4`` | ``foss/2019b`` -``2.5.3`` | ``-Python-3.7.4`` | ``intel/2019b`` -``2.5.4`` | ``-Python-3.7.4`` | ``foss/2019b`` -``2.5.4`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``2.5b`` | ``-Python-2.7.14`` | ``intel/2018a`` -``2.6.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``2.6.0`` | ``-Python-3.8.2`` | ``intel/2020a`` -``2.6.2`` | | ``foss/2020b`` -``2.6.2`` | | ``intel/2020b`` -``2.7.0`` | | ``foss/2020b`` -``2.7.2`` | | ``foss/2021a`` -``2.7.2`` | | ``intel/2021a`` -``2.7.3`` | | ``foss/2021b`` -``2.8.0`` | | ``foss/2021b`` -``2.8.1`` | | ``foss/2022a`` -``2.9.0`` | | ``foss/2022b`` -``2.9.0`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``2.6.2`` | ``foss/2020b`` +``2.6.2`` | ``intel/2020b`` +``2.7.0`` | ``foss/2020b`` +``2.7.2`` | ``foss/2021a`` +``2.7.2`` | ``intel/2021a`` +``2.7.3`` | ``foss/2021b`` +``2.8.0`` | ``foss/2021b`` +``2.8.1`` | ``foss/2022a`` +``2.9.0`` | ``foss/2022b`` +``2.9.0`` | ``foss/2023a`` +``2.9.2`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PLY.md b/docs/version-specific/supported-software/p/PLY.md index 454936921d..840ffbd77b 100644 --- a/docs/version-specific/supported-software/p/PLY.md +++ b/docs/version-specific/supported-software/p/PLY.md @@ -8,14 +8,12 @@ PLY is yet another implementation of lex and yacc for Python. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.11`` | | ``GCCcore/12.2.0`` -``3.11`` | | ``GCCcore/12.3.0`` -``3.11`` | | ``GCCcore/13.2.0`` -``3.11`` | | ``GCCcore/13.3.0`` -``3.11`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``3.11`` | ``-Python-3.6.4`` | ``foss/2018a`` +version | toolchain +--------|---------- +``3.11`` | ``GCCcore/12.2.0`` +``3.11`` | ``GCCcore/12.3.0`` +``3.11`` | ``GCCcore/13.2.0`` +``3.11`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PLplot.md b/docs/version-specific/supported-software/p/PLplot.md deleted file mode 100644 index 836cbc2b73..0000000000 --- a/docs/version-specific/supported-software/p/PLplot.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PLplot - -PLplot is a cross-platform software package for creating scientific plots whose (UTF-8) plot symbols and text are limited in practice only by what Unicode-aware system fonts are installed on a user's computer. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``5.11.1`` | ``-Java-1.7.0_80-Python-2.7.11`` | ``foss/2016a`` -``5.11.1`` | ``-Java-1.7.0_80-Python-2.7.12`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PMIx.md b/docs/version-specific/supported-software/p/PMIx.md index bdc2470218..69e923630c 100644 --- a/docs/version-specific/supported-software/p/PMIx.md +++ b/docs/version-specific/supported-software/p/PMIx.md @@ -4,30 +4,13 @@ search: --- # PMIx -Process Management for Exascale Environments PMI Exascale (PMIx) represents an attempt to resolve these questions by providing an extended version of the PMI standard specifically designed to support clusters up to and including exascale sizes. The overall objective of the project is not to branch the existing pseudo-standard definitions - in fact, PMIx fully supports both of the existing PMI-1 and PMI-2 APIs - but rather to (a) augment and extend those APIs to eliminate some current restrictions that impact scalability, and (b) provide a reference implementation of the PMI-server that demonstrates the desired level of scalability. +Process Management for Exascale Environments PMI Exascale (PMIx) represents an attempt to provide an extended version of the PMI standard specifically designed to support clusters up to and including exascale sizes. The overall objective of the project is not to branch the existing pseudo-standard definitions - in fact, PMIx fully supports both of the existing PMI-1 and PMI-2 APIs - but rather to (a) augment and extend those APIs to eliminate some current restrictions that impact scalability, and (b) provide a reference implementation of the PMI-server that demonstrates the desired level of scalability. *homepage*: version | toolchain --------|---------- -``1.2.5`` | ``GCCcore/6.4.0`` -``2.1.3`` | ``GCCcore/7.2.0`` -``2.1.3`` | ``GCCcore/7.3.0`` -``2.2.1`` | ``GCCcore/7.2.0`` -``2.2.1`` | ``GCCcore/7.3.0`` -``2.2.1`` | ``GCCcore/8.2.0`` -``2.2.3`` | ``GCCcore/7.2.0`` -``2.2.3`` | ``GCCcore/7.3.0`` -``3.0.1`` | ``GCCcore/6.4.0`` -``3.0.1`` | ``GCCcore/7.3.0`` -``3.0.2`` | ``GCCcore/8.2.0`` -``3.0.2`` | ``GCCcore/8.3.0`` -``3.1.1`` | ``GCCcore/6.4.0`` -``3.1.1`` | ``GCCcore/7.3.0`` -``3.1.1`` | ``GCCcore/8.2.0`` -``3.1.4`` | ``GCCcore/8.3.0`` ``3.1.5`` | ``GCCcore/10.2.0`` -``3.1.5`` | ``GCCcore/9.3.0`` ``3.2.3`` | ``GCCcore/10.3.0`` ``4.1.0`` | ``GCCcore/11.2.0`` ``4.1.2`` | ``GCCcore/11.3.0`` @@ -35,6 +18,7 @@ version | toolchain ``4.2.4`` | ``GCCcore/12.3.0`` ``4.2.6`` | ``GCCcore/13.2.0`` ``5.0.2`` | ``GCCcore/13.3.0`` +``5.0.6`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/POT.md b/docs/version-specific/supported-software/p/POT.md index 1866a2ddc9..9d6a58e197 100644 --- a/docs/version-specific/supported-software/p/POT.md +++ b/docs/version-specific/supported-software/p/POT.md @@ -10,8 +10,8 @@ POT (Python Optimal Transport) is a Python library provide several solvers for o version | versionsuffix | toolchain --------|---------------|---------- -``0.5.1`` | ``-Python-3.6.6`` | ``intel/2018b`` ``0.9.0`` | | ``foss/2022a`` +``0.9.3`` | ``-CUDA-12.1.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/POV-Ray.md b/docs/version-specific/supported-software/p/POV-Ray.md index 3d23e7c03e..8a40d342eb 100644 --- a/docs/version-specific/supported-software/p/POV-Ray.md +++ b/docs/version-specific/supported-software/p/POV-Ray.md @@ -6,18 +6,12 @@ search: The Persistence of Vision Raytracer, or POV-Ray, is a ray tracing program which generates images from a text-based scene description, and is available for a variety of computer platforms. POV-Ray is a high-quality, Free Software tool for creating stunning three-dimensional graphics. The source code is available for those wanting to do their own ports. -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.7.0.0`` | ``intel/2016b`` ``3.7.0.10`` | ``GCC/11.3.0`` ``3.7.0.10`` | ``GCC/12.3.0`` -``3.7.0.7`` | ``foss/2017b`` -``3.7.0.7`` | ``foss/2018b`` -``3.7.0.7`` | ``intel/2017b`` -``3.7.0.7`` | ``intel/2018a`` -``3.7.0.7`` | ``intel/2018b`` ``3.7.0.8`` | ``GCC/10.2.0`` ``3.7.0.8`` | ``iccifort/2020.4.304`` diff --git a/docs/version-specific/supported-software/p/PPfold.md b/docs/version-specific/supported-software/p/PPfold.md deleted file mode 100644 index 52fd9bf65a..0000000000 --- a/docs/version-specific/supported-software/p/PPfold.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PPfold - -PPfold is a new implementation of pfold, written in Java 6.0. It can predict the consensus secondary structure of RNA alignments through a stochastic context-free grammar coupled to an evolutionary model. It can also use data from chemical probing experiments to predict RNA secondary structure. PPfold is multithreaded, and can solve the structure of much longer alignments than pfold. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.1.1`` | ``-Java-1.8.0_66`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PRANK.md b/docs/version-specific/supported-software/p/PRANK.md index df317855fb..0a8b8df775 100644 --- a/docs/version-specific/supported-software/p/PRANK.md +++ b/docs/version-specific/supported-software/p/PRANK.md @@ -4,7 +4,7 @@ search: --- # PRANK -PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. PRANK is based on a novel algorithm that treats insertions correctly and avoids over-estimation of the number of deletion events. +PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. PRANK is based on a novel algorithm that treats insertions correctly and avoids over-estimation of the number of deletion events. *homepage*: @@ -15,8 +15,6 @@ version | toolchain ``170427`` | ``GCC/11.2.0`` ``170427`` | ``GCC/11.3.0`` ``170427`` | ``GCC/12.3.0`` -``170427`` | ``GCC/9.3.0`` -``170427`` | ``intel/2018a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PRC.md b/docs/version-specific/supported-software/p/PRC.md deleted file mode 100644 index f79377efda..0000000000 --- a/docs/version-specific/supported-software/p/PRC.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PRC - -PRC is a stand-alone program for aligning and scoring two profile hidden Markov models. This can be used to detect remote relationships between profiles more effectively than by doing simple profile-sequence comparisons. PRC takes into account all transition and emission probabilities in both hidden Markov models. - -*homepage*: - -version | toolchain ---------|---------- -``1.5.6`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PRINSEQ.md b/docs/version-specific/supported-software/p/PRINSEQ.md index 2c814d2c30..642b95d740 100644 --- a/docs/version-specific/supported-software/p/PRINSEQ.md +++ b/docs/version-specific/supported-software/p/PRINSEQ.md @@ -10,7 +10,6 @@ A bioinformatics tool to PRe-process and show INformation of SEQuence data. version | versionsuffix | toolchain --------|---------------|---------- -``0.20.4`` | ``-Perl-5.28.0`` | ``foss/2018b`` ``0.20.4`` | ``-Perl-5.32.0`` | ``foss/2020b`` ``0.20.4`` | ``-Perl-5.34.0`` | ``foss/2021b`` diff --git a/docs/version-specific/supported-software/p/PRISMS-PF.md b/docs/version-specific/supported-software/p/PRISMS-PF.md index ffbb290be7..e190f997fc 100644 --- a/docs/version-specific/supported-software/p/PRISMS-PF.md +++ b/docs/version-specific/supported-software/p/PRISMS-PF.md @@ -10,8 +10,6 @@ PRISMS-PF is a powerful, massively parallel finite element code for conducting p version | toolchain --------|---------- -``2.1.1`` | ``foss/2019a`` -``2.1.1`` | ``intel/2019a`` ``2.2`` | ``foss/2021a`` diff --git a/docs/version-specific/supported-software/p/PROJ.md b/docs/version-specific/supported-software/p/PROJ.md index 14899fdb07..4fbe5a2063 100644 --- a/docs/version-specific/supported-software/p/PROJ.md +++ b/docs/version-specific/supported-software/p/PROJ.md @@ -4,30 +4,13 @@ search: --- # PROJ -Program proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates +Program proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates -*homepage*: +*homepage*: version | toolchain --------|---------- -``4.9.2`` | ``foss/2016a`` -``4.9.2`` | ``foss/2016b`` -``4.9.2`` | ``intel/2016a`` -``4.9.2`` | ``intel/2016b`` -``4.9.3`` | ``foss/2016b`` -``4.9.3`` | ``foss/2017b`` -``4.9.3`` | ``intel/2016b`` -``4.9.3`` | ``intel/2017a`` -``4.9.3`` | ``intel/2017b`` -``5.0.0`` | ``foss/2018a`` -``5.0.0`` | ``foss/2018b`` -``5.0.0`` | ``intel/2018a`` -``5.0.0`` | ``intel/2018b`` -``5.0.0`` | ``iomkl/2018a`` -``6.0.0`` | ``GCCcore/8.2.0`` -``6.2.1`` | ``GCCcore/8.3.0`` ``6.3.1`` | ``GCCcore/10.3.0`` -``7.0.0`` | ``GCCcore/9.3.0`` ``7.2.1`` | ``GCCcore/10.2.0`` ``8.0.1`` | ``GCCcore/10.3.0`` ``8.1.0`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/p/PRRTE.md b/docs/version-specific/supported-software/p/PRRTE.md index 7a8569cfe3..1f0974395a 100644 --- a/docs/version-specific/supported-software/p/PRRTE.md +++ b/docs/version-specific/supported-software/p/PRRTE.md @@ -11,6 +11,7 @@ PRRTE is the PMIx Reference RunTime Environment version | toolchain --------|---------- ``3.0.5`` | ``GCCcore/13.3.0`` +``3.0.8`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PRSice.md b/docs/version-specific/supported-software/p/PRSice.md index c19c2aecb0..06288daffa 100644 --- a/docs/version-specific/supported-software/p/PRSice.md +++ b/docs/version-specific/supported-software/p/PRSice.md @@ -4,18 +4,16 @@ search: --- # PRSice -PRSice (pronounced 'precise') is a Polygenic Risk Score software for calculating, applying, evaluating and plotting the results of polygenic risk scores (PRS) analyses. +PRSice (pronounced 'precise') is a Polygenic Risk Score software for calculating, applying, evaluating and plotting the results of polygenic risk scores (PRS) analyses. *homepage*: version | toolchain --------|---------- -``2.2.12`` | ``GCCcore/8.3.0`` -``2.3.1`` | ``GCCcore/9.3.0`` ``2.3.3`` | ``GCCcore/10.3.0`` -``2.3.3`` | ``GCCcore/9.3.0`` ``2.3.5`` | ``GCCcore/11.3.0`` ``2.3.5`` | ``GCCcore/12.3.0`` +``2.3.5`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PSI.md b/docs/version-specific/supported-software/p/PSI.md deleted file mode 100644 index ec54ee4d7c..0000000000 --- a/docs/version-specific/supported-software/p/PSI.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PSI - -PSI4 is an open-source suite of ab initio quantum chemistry programs designed for efficient, high-accuracy simulations of a variety of molecular properties. We can routinely perform computations with more than 2500 basis functions running serially or in parallel. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``4.0b6-20160201`` | ``-mt-Python-2.7.11`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PSI4.md b/docs/version-specific/supported-software/p/PSI4.md index 95de497bd3..0d40cf63e4 100644 --- a/docs/version-specific/supported-software/p/PSI4.md +++ b/docs/version-specific/supported-software/p/PSI4.md @@ -4,19 +4,14 @@ search: --- # PSI4 -PSI4 is an open-source suite of ab initio quantum chemistry programs designed for efficient, high-accuracy simulations of a variety of molecular properties. We can routinely perform computations with more than 2500 basis functions running serially or in parallel. +PSI4 is an open-source suite of ab initio quantum chemistry programs designed for efficient, high-accuracy simulations of a variety of molecular properties. We can routinely perform computations with more than 2500 basis functions running serially or in parallel. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``1.0`` | ``-mt-Python-2.7.11`` | ``intel/2016a`` -``1.2.1`` | ``-Python-2.7.15-maxam8`` | ``intel/2018b`` -``1.2.1`` | ``-Python-2.7.15`` | ``intel/2018b`` -``1.3.1`` | ``-Python-3.7.2`` | ``foss/2019a`` -``1.3.2`` | ``-Python-3.7.4`` | ``intel/2019b`` -``1.7`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``1.7`` | ``foss/2021b`` +``1.9.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PSIPRED.md b/docs/version-specific/supported-software/p/PSIPRED.md index 045a6d73aa..e9ae47a47b 100644 --- a/docs/version-specific/supported-software/p/PSIPRED.md +++ b/docs/version-specific/supported-software/p/PSIPRED.md @@ -11,7 +11,6 @@ Accurate protein secondary structure prediction version | toolchain --------|---------- ``4.02`` | ``GCC/12.3.0`` -``4.02`` | ``GCC/8.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PSORTb.md b/docs/version-specific/supported-software/p/PSORTb.md deleted file mode 100644 index 1ef0772c56..0000000000 --- a/docs/version-specific/supported-software/p/PSORTb.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PSORTb - -PSORTb v3.0.4 is the most precise bacterial localization prediction tool available. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0.4`` | ``-Perl-5.22.1`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PSolver.md b/docs/version-specific/supported-software/p/PSolver.md index e53804ef67..c8c932d166 100644 --- a/docs/version-specific/supported-software/p/PSolver.md +++ b/docs/version-specific/supported-software/p/PSolver.md @@ -4,18 +4,12 @@ search: --- # PSolver -Poisson Solver from the BigDFT code compiled as a standalone library. +Interpolating scaling function Poisson Solver Library -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.7.6`` | ``foss/2017b`` -``1.7.6`` | ``foss/2018a`` -``1.7.6`` | ``foss/2018b`` -``1.7.6`` | ``intel/2017b`` -``1.7.6`` | ``intel/2018a`` -``1.7.6`` | ``intel/2018b`` ``1.8.3`` | ``foss/2020b`` ``1.8.3`` | ``foss/2021a`` ``1.8.3`` | ``foss/2021b`` diff --git a/docs/version-specific/supported-software/p/PTESFinder.md b/docs/version-specific/supported-software/p/PTESFinder.md deleted file mode 100644 index e8875aba55..0000000000 --- a/docs/version-specific/supported-software/p/PTESFinder.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PTESFinder - -Post-Transcriptional Exon Shuffling (PTES) Identification Pipeline - -*homepage*: - -version | toolchain ---------|---------- -``1`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PYTHIA.md b/docs/version-specific/supported-software/p/PYTHIA.md index 4f22c40951..8e7235ac9f 100644 --- a/docs/version-specific/supported-software/p/PYTHIA.md +++ b/docs/version-specific/supported-software/p/PYTHIA.md @@ -4,14 +4,13 @@ search: --- # PYTHIA -PYTHIA is a standard tool for the generation of events in high-energy collisions, comprising a coherent set of physics models for the evolution from a few-body hard process to a complex multiparticle final state. +PYTHIA is a program for the generation of high-energy physics collision events, i.e. for the description of collisions at high energies between electrons, protons, photons and heavy nuclei. It contains theory and models for a number of physics aspects, including hard and soft interactions, parton distributions, initial- and final-state parton showers, multiparton interactions, fragmentation and decay. It is largely based on original research, but also borrows many formulae and other knowledge from the literature. As such it is categorized as a general purpose Monte Carlo event generator. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``8.226`` | ``-Python-2.7.13`` | ``intel/2017a`` -``8.309`` | | ``foss/2022b`` +version | toolchain +--------|---------- +``8.309`` | ``foss/2022b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PaStiX.md b/docs/version-specific/supported-software/p/PaStiX.md index baa957edcd..10c3fa99a4 100644 --- a/docs/version-specific/supported-software/p/PaStiX.md +++ b/docs/version-specific/supported-software/p/PaStiX.md @@ -10,7 +10,6 @@ PaStiX (Parallel Sparse matriX package) is a scientific library that provides a version | toolchain --------|---------- -``5.2.3`` | ``foss/2017b`` ``6.3.2`` | ``foss/2023b`` ``6.3.2`` | ``intel/2023b`` diff --git a/docs/version-specific/supported-software/p/Pandoc.md b/docs/version-specific/supported-software/p/Pandoc.md index d361e6e51e..5f75f51f6f 100644 --- a/docs/version-specific/supported-software/p/Pandoc.md +++ b/docs/version-specific/supported-software/p/Pandoc.md @@ -6,15 +6,14 @@ search: If you need to convert files from one markup format into another, pandoc is your swiss-army knife -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.1.3`` | ``system`` ``2.10`` | ``system`` ``2.13`` | ``system`` -``2.5`` | ``system`` ``3.1.2`` | ``system`` +``3.6.2`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Pango.md b/docs/version-specific/supported-software/p/Pango.md index 88b27b2cd9..deefd6296e 100644 --- a/docs/version-specific/supported-software/p/Pango.md +++ b/docs/version-specific/supported-software/p/Pango.md @@ -10,25 +10,6 @@ Pango is a library for laying out and rendering of text, with an emphasis on int version | toolchain --------|---------- -``1.39.0`` | ``foss/2016a`` -``1.39.0`` | ``intel/2016a`` -``1.40.1`` | ``foss/2016a`` -``1.40.1`` | ``intel/2016a`` -``1.40.12`` | ``intel/2017a`` -``1.40.14`` | ``foss/2017b`` -``1.40.14`` | ``intel/2017b`` -``1.40.3`` | ``foss/2016b`` -``1.40.3`` | ``intel/2016b`` -``1.40.5`` | ``intel/2017a`` -``1.41.0`` | ``foss/2017b`` -``1.41.0`` | ``intel/2017b`` -``1.41.1`` | ``foss/2018a`` -``1.41.1`` | ``intel/2018a`` -``1.42.4`` | ``foss/2018b`` -``1.42.4`` | ``fosscuda/2018b`` -``1.43.0`` | ``GCCcore/8.2.0`` -``1.44.7`` | ``GCCcore/8.3.0`` -``1.44.7`` | ``GCCcore/9.3.0`` ``1.47.0`` | ``GCCcore/10.2.0`` ``1.48.5`` | ``GCCcore/10.3.0`` ``1.48.8`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/p/Panoply.md b/docs/version-specific/supported-software/p/Panoply.md new file mode 100644 index 0000000000..f58c987a1b --- /dev/null +++ b/docs/version-specific/supported-software/p/Panoply.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Panoply + +Panoply plots geo-referenced and other arrays from netCDF, HDF, GRIB, and other datasets. + +*homepage*: + +version | toolchain +--------|---------- +``5.5.1`` | ``system`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/ParMETIS.md b/docs/version-specific/supported-software/p/ParMETIS.md index d514e73a99..d9e1bb6c4e 100644 --- a/docs/version-specific/supported-software/p/ParMETIS.md +++ b/docs/version-specific/supported-software/p/ParMETIS.md @@ -6,20 +6,10 @@ search: ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes. -*homepage*: +*homepage*: version | toolchain --------|---------- -``4.0.3`` | ``foss/2016a`` -``4.0.3`` | ``foss/2016b`` -``4.0.3`` | ``foss/2017a`` -``4.0.3`` | ``foss/2017b`` -``4.0.3`` | ``foss/2018a`` -``4.0.3`` | ``foss/2018b`` -``4.0.3`` | ``gimkl/2.11.5`` -``4.0.3`` | ``gompi/2019a`` -``4.0.3`` | ``gompi/2019b`` -``4.0.3`` | ``gompi/2020a`` ``4.0.3`` | ``gompi/2020b`` ``4.0.3`` | ``gompi/2021a`` ``4.0.3`` | ``gompi/2021b`` @@ -27,19 +17,10 @@ version | toolchain ``4.0.3`` | ``gompi/2022b`` ``4.0.3`` | ``gompi/2023a`` ``4.0.3`` | ``gompi/2023b`` -``4.0.3`` | ``iimpi/2019a`` -``4.0.3`` | ``iimpi/2019b`` -``4.0.3`` | ``iimpi/2020a`` ``4.0.3`` | ``iimpi/2020b`` ``4.0.3`` | ``iimpi/2021a`` ``4.0.3`` | ``iimpi/2021b`` ``4.0.3`` | ``iimpi/2023b`` -``4.0.3`` | ``intel/2016a`` -``4.0.3`` | ``intel/2016b`` -``4.0.3`` | ``intel/2017a`` -``4.0.3`` | ``intel/2017b`` -``4.0.3`` | ``intel/2018a`` -``4.0.3`` | ``intel/2018b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/ParMGridGen.md b/docs/version-specific/supported-software/p/ParMGridGen.md index 1b64bc3e59..404be92132 100644 --- a/docs/version-specific/supported-software/p/ParMGridGen.md +++ b/docs/version-specific/supported-software/p/ParMGridGen.md @@ -10,13 +10,7 @@ ParMGridGen is an MPI-based parallel library that is based on the serial package version | toolchain --------|---------- -``1.0`` | ``gimkl/2.11.5`` -``1.0`` | ``gompi/2019b`` -``1.0`` | ``gompi/2020a`` -``1.0`` | ``iimpi/2019b`` -``1.0`` | ``iimpi/2020a`` -``1.0`` | ``intel/2016a`` -``1.0`` | ``intel/2017a`` +``1.0`` | ``gompi/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/ParaView.md b/docs/version-specific/supported-software/p/ParaView.md index a53c11db3c..c3064f9782 100644 --- a/docs/version-specific/supported-software/p/ParaView.md +++ b/docs/version-specific/supported-software/p/ParaView.md @@ -6,15 +6,10 @@ search: ParaView is a scientific parallel visualizer. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``4.4.0`` | | ``foss/2016a`` -``4.4.0`` | ``-mpi`` | ``gimkl/2.11.5`` -``4.4.0`` | | ``intel/2016a`` -``5.1.2`` | ``-mpi`` | ``foss/2016b`` -``5.1.2`` | ``-mpi`` | ``intel/2016b`` ``5.10.1`` | ``-mpi`` | ``foss/2022a`` ``5.11.0`` | ``-mpi`` | ``foss/2022b`` ``5.11.1`` | ``-mpi`` | ``foss/2022a`` @@ -23,21 +18,8 @@ version | versionsuffix | toolchain ``5.11.2`` | | ``foss/2023a`` ``5.12.0`` | ``-Qt5`` | ``foss/2023b`` ``5.12.0`` | | ``foss/2023b`` -``5.2.0`` | ``-mpi`` | ``foss/2016b`` -``5.2.0`` | ``-mpi`` | ``intel/2017a`` -``5.3.0`` | ``-mpi`` | ``foss/2016b`` -``5.4.1`` | ``-mpi`` | ``foss/2017b`` -``5.4.1`` | ``-mpi`` | ``foss/2018a`` -``5.4.1`` | ``-mpi`` | ``foss/2018b`` -``5.4.1`` | ``-Python-2.7.16-mpi`` | ``foss/2019b`` -``5.4.1`` | ``-mpi`` | ``intel/2017a`` -``5.4.1`` | ``-mpi`` | ``intel/2017b`` -``5.4.1`` | ``-mpi`` | ``intel/2018a`` -``5.5.2`` | ``-Python-2.7.15-mpi`` | ``foss/2018b`` -``5.6.2`` | ``-Python-3.7.4-mpi`` | ``foss/2019b`` -``5.6.2`` | ``-Python-3.7.4-mpi`` | ``intel/2019b`` -``5.8.0`` | ``-Python-3.8.2-mpi`` | ``foss/2020a`` -``5.8.0`` | ``-Python-3.8.2-mpi`` | ``intel/2020a`` +``5.13.2`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``5.13.2`` | | ``foss/2023a`` ``5.8.1`` | ``-mpi`` | ``foss/2020b`` ``5.9.1`` | ``-mpi`` | ``foss/2021a`` ``5.9.1`` | ``-mpi`` | ``foss/2021b`` diff --git a/docs/version-specific/supported-software/p/ParallelIO.md b/docs/version-specific/supported-software/p/ParallelIO.md index 54b1852610..453c1ecbc7 100644 --- a/docs/version-specific/supported-software/p/ParallelIO.md +++ b/docs/version-specific/supported-software/p/ParallelIO.md @@ -10,7 +10,6 @@ A high-level Parallel I/O Library for structured grid applications version | toolchain --------|---------- -``2.2.2a`` | ``intel/2017a`` ``2.5.10`` | ``gompi/2022a`` ``2.5.10`` | ``iimpi/2022a`` diff --git a/docs/version-specific/supported-software/p/Paraver.md b/docs/version-specific/supported-software/p/Paraver.md index fce55147dd..ffeb9b8222 100644 --- a/docs/version-specific/supported-software/p/Paraver.md +++ b/docs/version-specific/supported-software/p/Paraver.md @@ -4,14 +4,16 @@ search: --- # Paraver -A very powerful performance visualization and analysis tool based on traces that can be used to analyse any information that is expressed on its input trace format. Traces for parallel MPI, OpenMP and other programs can be genereated with Extrae. +A very powerful performance visualization and analysis tool based on traces that can be used to analyse any information that is expressed on its input trace format. Traces for parallel MPI, OpenMP and other programs can be generated with Extrae. *homepage*: version | toolchain --------|---------- ``4.11.1`` | ``foss/2022a`` -``4.8.1`` | ``foss/2019a`` +``4.11.4`` | ``GCC/12.3.0`` +``4.11.4`` | ``GCC/13.2.0`` +``4.12.0`` | ``GCC/13.3.0`` ``4.9.2`` | ``foss/2021a`` diff --git a/docs/version-specific/supported-software/p/ParmEd.md b/docs/version-specific/supported-software/p/ParmEd.md deleted file mode 100644 index 923ffa28de..0000000000 --- a/docs/version-specific/supported-software/p/ParmEd.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ParmEd - -ParmEd is a general tool for aiding in investigations of biomolecular systems using popular molecular simulation packages, like Amber, CHARMM, and OpenMM written in Python. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.7.3`` | ``-Python-3.6.3`` | ``intel/2017b`` -``3.2.0`` | ``-Python-3.7.4`` | ``intel/2019b`` -``3.2.0`` | ``-Python-3.8.2`` | ``intel/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/Parsl.md b/docs/version-specific/supported-software/p/Parsl.md index 292555d3db..d929cabc21 100644 --- a/docs/version-specific/supported-software/p/Parsl.md +++ b/docs/version-specific/supported-software/p/Parsl.md @@ -11,6 +11,7 @@ Parsl extends parallelism in Python beyond a single computer. You can use Parsl version | toolchain --------|---------- ``2023.7.17`` | ``GCCcore/11.3.0`` +``2024.4.22`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ALADIN.md b/docs/version-specific/supported-software/p/Parsnp.md similarity index 53% rename from docs/version-specific/supported-software/a/ALADIN.md rename to docs/version-specific/supported-software/p/Parsnp.md index 2023b8759f..f165979558 100644 --- a/docs/version-specific/supported-software/a/ALADIN.md +++ b/docs/version-specific/supported-software/p/Parsnp.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# ALADIN +# Parsnp -ALADIN was entirely built on the notion of compatibility with its mother system, IFS/ARPEG. The latter, a joint development between the European Centre for Medium-Range Weather Forecasts (ECMWF) and Meteo-France, was only meant to consider global Numerical Weather Prediction applications; hence the idea, for ALADIN, to complement the IFS/ARPEGE project with a limited area model (LAM) version, while keeping the differences between the two softwares as small as possible. +Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction. -*homepage*: +*homepage*: version | toolchain --------|---------- -``36t1_op2bf1`` | ``intel/2016a`` +``2.1.1`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PartitionFinder.md b/docs/version-specific/supported-software/p/PartitionFinder.md index 7be13b738f..00317b43fa 100644 --- a/docs/version-specific/supported-software/p/PartitionFinder.md +++ b/docs/version-specific/supported-software/p/PartitionFinder.md @@ -11,7 +11,6 @@ PartitionFinder 2 is a Python program for simultaneously choosing partitioning s version | versionsuffix | toolchain --------|---------------|---------- ``2.1.1`` | ``-Python-2.7.18`` | ``foss/2020b`` -``2.1.1`` | ``-Python-2.7.16`` | ``intel/2019b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PennCNV.md b/docs/version-specific/supported-software/p/PennCNV.md deleted file mode 100644 index 945f658557..0000000000 --- a/docs/version-specific/supported-software/p/PennCNV.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PennCNV - -A free software tool for Copy Number Variation (CNV) detection from SNP genotyping arrays. Currently it can handle signal intensity data from Illumina and Affymetrix arrays. With appropriate preparation of file format, it can also handle other types of SNP arrays and oligonucleotide arrays. - -*homepage*: - -version | toolchain ---------|---------- -``1.0.5`` | ``GCCcore/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/ARCH.md b/docs/version-specific/supported-software/p/PennyLane.md similarity index 72% rename from docs/version-specific/supported-software/a/ARCH.md rename to docs/version-specific/supported-software/p/PennyLane.md index 8eed7f5440..02d2b5bafd 100644 --- a/docs/version-specific/supported-software/a/ARCH.md +++ b/docs/version-specific/supported-software/p/PennyLane.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# ARCH +# PennyLane -Autoregressive Conditional Heteroskedasticity (ARCH) and other tools for financial econometrics, written in Python (with Cython and/or Numba used to improve performance). +PennyLane is a cross-platform Python library for quantum computing, quantum machine learning, and quantum chemistry. Train a quantum computer the same way as a neural network. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``4.5.0`` | ``-Python-3.6.4`` | ``intel/2018a`` +``0.37.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Percolator.md b/docs/version-specific/supported-software/p/Percolator.md deleted file mode 100644 index 9a04736999..0000000000 --- a/docs/version-specific/supported-software/p/Percolator.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Percolator - -Semi-supervised learning for peptide identification from shotgun proteomics datasets - -*homepage*: - -version | toolchain ---------|---------- -``3.4`` | ``gompi/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/Perl-bundle-CPAN.md b/docs/version-specific/supported-software/p/Perl-bundle-CPAN.md index 9885e764d3..b75d4a02da 100644 --- a/docs/version-specific/supported-software/p/Perl-bundle-CPAN.md +++ b/docs/version-specific/supported-software/p/Perl-bundle-CPAN.md @@ -13,6 +13,7 @@ version | toolchain ``5.36.1`` | ``GCCcore/12.3.0`` ``5.38.0`` | ``GCCcore/13.2.0`` ``5.38.2`` | ``GCCcore/13.3.0`` +``5.40.0`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Perl.md b/docs/version-specific/supported-software/p/Perl.md index d2d4205436..65e0f970c1 100644 --- a/docs/version-specific/supported-software/p/Perl.md +++ b/docs/version-specific/supported-software/p/Perl.md @@ -4,47 +4,12 @@ search: --- # Perl -Larry Wall's Practical Extraction and Report Language +Larry Wall's Practical Extraction and Report Language This is a minimal build without any modules. Should only be used for build dependencies. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``5.20.1`` | ``-bare`` | ``GCC/4.8.2`` -``5.20.1`` | ``-bare`` | ``GCC/4.9.2`` -``5.20.2`` | ``-bare`` | ``GCC/4.9.2`` -``5.20.3`` | | ``foss/2016a`` -``5.20.3`` | | ``intel/2016a`` -``5.22.0`` | ``-bare`` | ``GCC/4.9.2`` -``5.22.1`` | ``-bare`` | ``foss/2016a`` -``5.22.1`` | | ``foss/2016a`` -``5.22.1`` | | ``foss/2016b`` -``5.22.1`` | ``-bare`` | ``intel/2016a`` -``5.22.1`` | | ``intel/2016a`` -``5.22.2`` | | ``intel/2016a`` -``5.24.0`` | | ``GCC/5.4.0-2.26`` -``5.24.0`` | | ``GCCcore/4.9.3`` -``5.24.0`` | | ``GCCcore/5.4.0`` -``5.24.0`` | ``-bare`` | ``foss/2016b`` -``5.24.0`` | | ``foss/2016b`` -``5.24.0`` | | ``intel/2016b`` -``5.24.1`` | | ``GCCcore/6.3.0`` -``5.24.1`` | | ``foss/2017a`` -``5.24.1`` | | ``intel/2017a`` -``5.26.0`` | | ``GCCcore/6.4.0`` -``5.26.0`` | | ``foss/2017b`` -``5.26.0`` | | ``intel/2017b`` -``5.26.0`` | | ``intel/2018.00`` -``5.26.0`` | | ``intel/2018.01`` -``5.26.1`` | | ``GCCcore/6.4.0`` -``5.26.1`` | ``-bare`` | ``foss/2018a`` -``5.26.1`` | | ``foss/2018a`` -``5.28.0`` | | ``GCCcore/7.3.0`` -``5.28.1`` | | ``GCCcore/8.2.0`` -``5.30.0`` | ``-minimal`` | ``GCCcore/8.3.0`` -``5.30.0`` | | ``GCCcore/8.3.0`` -``5.30.2`` | ``-minimal`` | ``GCCcore/9.3.0`` -``5.30.2`` | | ``GCCcore/9.3.0`` ``5.32.0`` | ``-minimal`` | ``GCCcore/10.2.0`` ``5.32.0`` | | ``GCCcore/10.2.0`` ``5.32.1`` | ``-minimal`` | ``GCCcore/10.3.0`` @@ -61,6 +26,7 @@ version | versionsuffix | toolchain ``5.38.0`` | | ``GCCcore/13.2.0`` ``5.38.0`` | | ``system`` ``5.38.2`` | | ``GCCcore/13.3.0`` +``5.40.0`` | | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Perl4-CoreLibs.md b/docs/version-specific/supported-software/p/Perl4-CoreLibs.md deleted file mode 100644 index 820c40ce7a..0000000000 --- a/docs/version-specific/supported-software/p/Perl4-CoreLibs.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Perl4-CoreLibs - -Libraries historically supplied with Perl 4 - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.003`` | ``-Perl-5.24.1`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PheWAS.md b/docs/version-specific/supported-software/p/PheWAS.md deleted file mode 100644 index 8b5bd38b04..0000000000 --- a/docs/version-specific/supported-software/p/PheWAS.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PheWAS - -Provides an accessible R interface to the phenome wide association study. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.12`` | ``-R-3.3.3`` | ``foss/2016b`` -``0.12`` | ``-R-3.3.3`` | ``intel/2016b`` -``0.99.5-2`` | ``-R-3.6.0`` | ``foss/2019a`` -``0.99.5-2`` | ``-R-3.6.0`` | ``intel/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PheWeb.md b/docs/version-specific/supported-software/p/PheWeb.md deleted file mode 100644 index d6e21ce6e0..0000000000 --- a/docs/version-specific/supported-software/p/PheWeb.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PheWeb - -A tool for building PheWAS websites from association files - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.20`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PhiPack.md b/docs/version-specific/supported-software/p/PhiPack.md index d80558b4e6..4d60945aaa 100644 --- a/docs/version-specific/supported-software/p/PhiPack.md +++ b/docs/version-specific/supported-software/p/PhiPack.md @@ -10,7 +10,7 @@ The PhiPack software package implements (in C) a few tests for recombination and version | toolchain --------|---------- -``2016.06.14`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` +``2016.06.14`` | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Phonopy-Spectroscopy.md b/docs/version-specific/supported-software/p/Phonopy-Spectroscopy.md new file mode 100644 index 0000000000..82d96365e8 --- /dev/null +++ b/docs/version-specific/supported-software/p/Phonopy-Spectroscopy.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Phonopy-Spectroscopy + +Phonopy-Spectroscopy is a project to add the capability to simulate vibrational spectra to the Phonopy code. + +*homepage*: + +version | toolchain +--------|---------- +``20240308`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/PhyML.md b/docs/version-specific/supported-software/p/PhyML.md index 670145efc2..ed3bbb2113 100644 --- a/docs/version-specific/supported-software/p/PhyML.md +++ b/docs/version-specific/supported-software/p/PhyML.md @@ -10,7 +10,6 @@ Phylogenetic estimation using (Maximum) Likelihood version | toolchain --------|---------- -``3.3.20190321`` | ``foss/2018b`` ``3.3.20200621`` | ``foss/2020b`` ``3.3.20220408`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/p/PhyloBayes-MPI.md b/docs/version-specific/supported-software/p/PhyloBayes-MPI.md deleted file mode 100644 index 3c51d1f9db..0000000000 --- a/docs/version-specific/supported-software/p/PhyloBayes-MPI.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PhyloBayes-MPI - -A Bayesian software for phylogenetic reconstruction using mixture models - -*homepage*: - -version | toolchain ---------|---------- -``20161021`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PhyloPhlAn.md b/docs/version-specific/supported-software/p/PhyloPhlAn.md index 48d5d565c4..cf7bd71121 100644 --- a/docs/version-specific/supported-software/p/PhyloPhlAn.md +++ b/docs/version-specific/supported-software/p/PhyloPhlAn.md @@ -8,11 +8,10 @@ PhyloPhlAn is an integrated pipeline for large-scale phylogenetic profiling of g *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``3.0.2`` | | ``foss/2021a`` -``3.0.3`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``3.0.2`` | ``foss/2021a`` +``3.0.3`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PileOMeth.md b/docs/version-specific/supported-software/p/PileOMeth.md deleted file mode 100644 index 3ab253abb0..0000000000 --- a/docs/version-specific/supported-software/p/PileOMeth.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PileOMeth - -PileOMeth processes a coordinate-sorted and indexed BAM or CRAM file containing some form of BS-seq alignments. PileOMeth extracts per-base methylation metrics from them. PileOMeth requires an indexed fasta file containing the reference genome as well. - -*homepage*: - -version | toolchain ---------|---------- -``0.1.11`` | ``foss/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/Pillow-SIMD.md b/docs/version-specific/supported-software/p/Pillow-SIMD.md index e6b64963af..af675a6401 100644 --- a/docs/version-specific/supported-software/p/Pillow-SIMD.md +++ b/docs/version-specific/supported-software/p/Pillow-SIMD.md @@ -8,24 +8,17 @@ Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Py *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``10.4.0`` | | ``GCCcore/13.3.0`` -``5.0.0`` | ``-Python-3.6.4`` | ``foss/2018a`` -``5.0.0`` | ``-Python-3.6.4`` | ``intel/2018a`` -``5.3.0.post0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``5.3.0.post0`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` -``5.3.0.post0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``6.0.x.post0`` | | ``GCCcore/8.2.0`` -``6.0.x.post0`` | | ``GCCcore/8.3.0`` -``7.1.2`` | | ``GCCcore/10.2.0`` -``7.1.2`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` -``8.2.0`` | | ``GCCcore/10.3.0`` -``8.3.1`` | | ``GCCcore/11.2.0`` -``8.3.2`` | | ``GCCcore/11.2.0`` -``9.2.0`` | | ``GCCcore/11.3.0`` -``9.5.0`` | | ``GCCcore/12.2.0`` -``9.5.0`` | | ``GCCcore/12.3.0`` +version | toolchain +--------|---------- +``10.4.0`` | ``GCCcore/13.2.0`` +``10.4.0`` | ``GCCcore/13.3.0`` +``7.1.2`` | ``GCCcore/10.2.0`` +``8.2.0`` | ``GCCcore/10.3.0`` +``8.3.1`` | ``GCCcore/11.2.0`` +``8.3.2`` | ``GCCcore/11.2.0`` +``9.2.0`` | ``GCCcore/11.3.0`` +``9.5.0`` | ``GCCcore/12.2.0`` +``9.5.0`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Pillow.md b/docs/version-specific/supported-software/p/Pillow.md index 2b1779354f..058c5cc2bd 100644 --- a/docs/version-specific/supported-software/p/Pillow.md +++ b/docs/version-specific/supported-software/p/Pillow.md @@ -13,34 +13,7 @@ version | versionsuffix | toolchain ``10.0.0`` | | ``GCCcore/12.3.0`` ``10.2.0`` | | ``GCCcore/13.2.0`` ``10.4.0`` | | ``GCCcore/13.3.0`` -``3.2.0`` | ``-Python-2.7.11-freetype-2.6.3`` | ``foss/2016a`` -``3.2.0`` | ``-Python-2.7.11-freetype-2.6.3`` | ``intel/2016a`` -``3.2.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``3.4.2`` | ``-Python-3.5.2`` | ``foss/2016b`` -``3.4.2`` | ``-Python-2.7.12`` | ``intel/2016b`` -``3.4.2`` | ``-Python-3.5.2-freetype-2.6.5`` | ``intel/2016b`` -``3.4.2`` | ``-Python-3.5.2`` | ``intel/2016b`` -``4.1.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``4.1.1`` | ``-Python-3.6.1`` | ``intel/2017a`` -``4.2.1`` | ``-Python-3.6.1`` | ``intel/2017a`` -``4.3.0`` | ``-Python-3.6.3`` | ``foss/2017b`` -``4.3.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``4.3.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``5.0.0`` | ``-Python-2.7.14`` | ``foss/2017b`` -``5.0.0`` | ``-Python-3.6.3`` | ``foss/2017b`` -``5.0.0`` | ``-Python-3.6.4`` | ``foss/2018a`` -``5.0.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``5.0.0`` | ``-Python-3.6.3`` | ``intel/2017b`` -``5.0.0`` | ``-Python-2.7.14`` | ``intel/2018a`` -``5.0.0`` | ``-Python-3.6.4`` | ``intel/2018a`` -``5.3.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``5.3.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``5.3.0`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` -``5.3.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``6.0.0`` | | ``GCCcore/8.2.0`` -``6.2.1`` | | ``GCCcore/8.3.0`` ``6.2.2`` | ``-Python-2.7.18`` | ``foss/2020b`` -``7.0.0`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` ``8.0.1`` | | ``GCCcore/10.2.0`` ``8.2.0`` | | ``GCCcore/10.3.0`` ``8.3.1`` | | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/p/Pilon.md b/docs/version-specific/supported-software/p/Pilon.md index 98ccadc07f..ca010e941a 100644 --- a/docs/version-specific/supported-software/p/Pilon.md +++ b/docs/version-specific/supported-software/p/Pilon.md @@ -10,9 +10,6 @@ Pilon is an automated genome assembly improvement and variant detection tool version | versionsuffix | toolchain --------|---------------|---------- -``1.22`` | ``-Java-1.8.0_162`` | ``system`` -``1.22`` | ``-Java-1.8`` | ``system`` -``1.23`` | ``-Java-1.8`` | ``system`` ``1.23`` | ``-Java-11`` | ``system`` diff --git a/docs/version-specific/supported-software/p/Pindel.md b/docs/version-specific/supported-software/p/Pindel.md index 8f3fa17862..a27e184838 100644 --- a/docs/version-specific/supported-software/p/Pindel.md +++ b/docs/version-specific/supported-software/p/Pindel.md @@ -4,16 +4,14 @@ search: --- # Pindel -Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads. +Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads. *homepage*: version | toolchain --------|---------- -``0.2.5b8`` | ``foss/2016b`` ``0.2.5b9-20170508`` | ``GCC/11.2.0`` ``0.2.5b9-20170508`` | ``GCC/11.3.0`` -``0.2.5b9-20170508`` | ``GCC/6.4.0-2.28`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Pingouin.md b/docs/version-specific/supported-software/p/Pingouin.md deleted file mode 100644 index 27b8c968bd..0000000000 --- a/docs/version-specific/supported-software/p/Pingouin.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Pingouin - -Pingouin is an open-source statistical package written in Python 3 and based mostly on Pandas and NumPy. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.3.8`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/Pint.md b/docs/version-specific/supported-software/p/Pint.md index 0e798e38f8..f99288d03b 100644 --- a/docs/version-specific/supported-software/p/Pint.md +++ b/docs/version-specific/supported-software/p/Pint.md @@ -8,14 +8,13 @@ Pint is a Python package to define, operate and manipulate physical quantities: *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.14`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``0.19.2`` | | ``GCCcore/11.2.0`` -``0.20.1`` | | ``GCCcore/10.3.0`` -``0.22`` | | ``GCCcore/11.3.0`` -``0.23`` | | ``GCCcore/12.3.0`` -``0.24`` | | ``GCCcore/13.2.0`` +version | toolchain +--------|---------- +``0.19.2`` | ``GCCcore/11.2.0`` +``0.20.1`` | ``GCCcore/10.3.0`` +``0.22`` | ``GCCcore/11.3.0`` +``0.23`` | ``GCCcore/12.3.0`` +``0.24`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Pisces.md b/docs/version-specific/supported-software/p/Pisces.md deleted file mode 100644 index af07958af2..0000000000 --- a/docs/version-specific/supported-software/p/Pisces.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Pisces - -Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows. - -*homepage*: - -version | toolchain ---------|---------- -``5.2.7.47`` | ``GCCcore/6.4.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PlaScope.md b/docs/version-specific/supported-software/p/PlaScope.md deleted file mode 100644 index c54746444c..0000000000 --- a/docs/version-specific/supported-software/p/PlaScope.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PlaScope - -Plasmid exploration of bacterial genomes - -*homepage*: - -version | toolchain ---------|---------- -``1.3.1`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PlasmaPy.md b/docs/version-specific/supported-software/p/PlasmaPy.md deleted file mode 100644 index cd7b784a1e..0000000000 --- a/docs/version-specific/supported-software/p/PlasmaPy.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PlasmaPy - -Open source Python ecosystem for plasma research and education - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.3.1`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/Platanus.md b/docs/version-specific/supported-software/p/Platanus.md deleted file mode 100644 index 4497b8b34f..0000000000 --- a/docs/version-specific/supported-software/p/Platanus.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Platanus - -PLATform for Assembling NUcleotide Sequences - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.1`` | ``-linux-x86_64`` | ``system`` -``1.2.4`` | | ``foss/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/Platypus.md b/docs/version-specific/supported-software/p/Platypus.md deleted file mode 100644 index 0672589e5f..0000000000 --- a/docs/version-specific/supported-software/p/Platypus.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Platypus - -Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.8.1`` | ``-Python-2.7.11`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/Ploticus.md b/docs/version-specific/supported-software/p/Ploticus.md deleted file mode 100644 index 3cd622ce40..0000000000 --- a/docs/version-specific/supported-software/p/Ploticus.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Ploticus - -Ploticus is a free GPL software utility that can produce various types of plots and graphs - -*homepage*: - -version | toolchain ---------|---------- -``2.42`` | ``GCCcore/7.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PnetCDF.md b/docs/version-specific/supported-software/p/PnetCDF.md index e9423d22d7..c03a836f5e 100644 --- a/docs/version-specific/supported-software/p/PnetCDF.md +++ b/docs/version-specific/supported-software/p/PnetCDF.md @@ -6,17 +6,10 @@ search: Parallel netCDF: A Parallel I/O Library for NetCDF File Access -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.10.0`` | ``foss/2018b`` -``1.10.0`` | ``intel/2018b`` -``1.12.1`` | ``gompi/2019b`` -``1.12.1`` | ``gompi/2020a`` -``1.12.1`` | ``gompic/2019b`` -``1.12.1`` | ``gompic/2020a`` -``1.12.1`` | ``iimpi/2020a`` ``1.12.2`` | ``gompi/2020b`` ``1.12.2`` | ``gompi/2021a`` ``1.12.2`` | ``gompic/2020b`` @@ -25,9 +18,9 @@ version | toolchain ``1.12.3`` | ``gompi/2022a`` ``1.12.3`` | ``gompi/2023a`` ``1.12.3`` | ``iimpi/2022a`` +``1.13.0`` | ``gompi/2024a`` ``1.13.0`` | ``iimpi/2023a`` -``1.8.1`` | ``intel/2017a`` -``1.9.0`` | ``intel/2018a`` +``1.14.0`` | ``gompi/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/v/VV.md b/docs/version-specific/supported-software/p/PoPoolation-TE2.md similarity index 59% rename from docs/version-specific/supported-software/v/VV.md rename to docs/version-specific/supported-software/p/PoPoolation-TE2.md index 4ab7382a03..5227fb51d9 100644 --- a/docs/version-specific/supported-software/v/VV.md +++ b/docs/version-specific/supported-software/p/PoPoolation-TE2.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# VV +# PoPoolation-TE2 -VV is an open-source and cross platform image viewer, designed for fast and simple visualization of spatio-temporal images: 2D, 2D+t, 3D and 3D+t (or 4D) images. Only the command-line (clitk) tools are build. +PoPoolationTE2: enables comparative population genomics of transposable elements (TE). As a major innovation PoPoolation TE2 introduces the physical pileup file which allows to homogenize the power to identify TEs and thus enables an unbiased comparison of TE abundance between samples, where samples could be pooled populations, tissues or sequenced individuals. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2018.09.19`` | ``-Python-3.6.6`` | ``foss/2018b`` +version | toolchain +--------|---------- +``1.10.03`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Porechop.md b/docs/version-specific/supported-software/p/Porechop.md index fa9ecc7bbe..f22d7da3cb 100644 --- a/docs/version-specific/supported-software/p/Porechop.md +++ b/docs/version-specific/supported-software/p/Porechop.md @@ -4,17 +4,15 @@ search: --- # Porechop -Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop performs thorough alignments to effectively find adapters, even at low sequence identity +Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop performs thorough alignments to effectively find adapters, even at low sequence identity. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.2.3`` | ``-Python-3.5.2`` | ``foss/2016b`` -``0.2.4`` | | ``GCCcore/10.3.0`` -``0.2.4`` | | ``GCCcore/11.2.0`` -``0.2.4`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.2.4`` | ``-Python-3.7.4`` | ``intel/2019b`` +version | toolchain +--------|---------- +``0.2.4-20240119`` | ``GCCcore/12.3.0`` +``0.2.4`` | ``GCCcore/10.3.0`` +``0.2.4`` | ``GCCcore/11.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PortAudio.md b/docs/version-specific/supported-software/p/PortAudio.md index 6ba789a4ea..48e6abf4eb 100644 --- a/docs/version-specific/supported-software/p/PortAudio.md +++ b/docs/version-specific/supported-software/p/PortAudio.md @@ -11,6 +11,7 @@ PortAudio is a free, cross-platform, open-source, audio I/O library. It lets yo version | toolchain --------|---------- ``19.7.0`` | ``foss/2022a`` +``19.7.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Portcullis.md b/docs/version-specific/supported-software/p/Portcullis.md deleted file mode 100644 index 1d21c9ad6c..0000000000 --- a/docs/version-specific/supported-software/p/Portcullis.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Portcullis - -Portcullis stands for PORTable CULLing of Invalid Splice junctions from pre-aligned RNA-seq data. It is known that RNAseq mapping tools generate many invalid junction predictions, particularly in deep datasets with high coverage over splice sites. In order to address this, instead for creating a new RNAseq mapper, with a focus on SJ accuracy we created a tool that takes in a BAM file generated by an RNAseq mapper of the user's own choice (e.g. Tophat2, Gsnap, STAR2 or HISAT2) as input (i.e. it's portable). It then, analyses and quantifies all splice junctions in the file before, filtering (culling) those which are unlikely to be genuine. Portcullis output's junctions in a variety of formats making it suitable for downstream analysis (such as differential splicing analysis and gene modelling) without additional work. Portcullis can also filter the original BAM file removing alignments associated with bad junctions. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.2`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PostgreSQL.md b/docs/version-specific/supported-software/p/PostgreSQL.md index 2671803e49..66b6ef9568 100644 --- a/docs/version-specific/supported-software/p/PostgreSQL.md +++ b/docs/version-specific/supported-software/p/PostgreSQL.md @@ -8,30 +8,16 @@ PostgreSQL is a powerful, open source object-relational database system. It is *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``10.2`` | ``-Python-2.7.14`` | ``intel/2018a`` -``10.3`` | ``-Python-2.7.14`` | ``foss/2017b`` -``10.3`` | ``-Python-2.7.14`` | ``foss/2018a`` -``10.3`` | | ``foss/2018b`` -``10.3`` | ``-Python-2.7.14`` | ``intel/2017b`` -``10.3`` | ``-Python-2.7.14`` | ``intel/2018a`` -``11.3`` | ``-Python-2.7.15`` | ``GCCcore/8.2.0`` -``11.3`` | ``-Python-3.7.2`` | ``GCCcore/8.2.0`` -``12.4`` | | ``GCCcore/9.3.0`` -``13.2`` | | ``GCCcore/10.2.0`` -``13.3`` | | ``GCCcore/10.3.0`` -``13.4`` | | ``GCCcore/11.2.0`` -``14.4`` | | ``GCCcore/11.3.0`` -``15.2`` | | ``GCCcore/12.2.0`` -``16.1`` | | ``GCCcore/12.3.0`` -``16.1`` | | ``GCCcore/13.2.0`` -``16.4`` | | ``GCCcore/13.3.0`` -``9.4.7`` | ``-Python-2.7.11`` | ``intel/2016a`` -``9.5.2`` | ``-Python-2.7.11`` | ``intel/2016a`` -``9.6.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``9.6.2`` | ``-Python-2.7.12`` | ``foss/2016b`` -``9.6.2`` | ``-Python-2.7.12`` | ``intel/2016b`` +version | toolchain +--------|---------- +``13.2`` | ``GCCcore/10.2.0`` +``13.3`` | ``GCCcore/10.3.0`` +``13.4`` | ``GCCcore/11.2.0`` +``14.4`` | ``GCCcore/11.3.0`` +``15.2`` | ``GCCcore/12.2.0`` +``16.1`` | ``GCCcore/12.3.0`` +``16.1`` | ``GCCcore/13.2.0`` +``16.4`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Postgres-XL.md b/docs/version-specific/supported-software/p/Postgres-XL.md deleted file mode 100644 index d42fd6551f..0000000000 --- a/docs/version-specific/supported-software/p/Postgres-XL.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Postgres-XL - -Postgres-XL is a horizontally scalable open source SQL database cluster, flexible enough to handle varying database workloads: - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``9.5r1`` | ``-Python-2.7.11`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/Primer3.md b/docs/version-specific/supported-software/p/Primer3.md deleted file mode 100644 index 9e465246f5..0000000000 --- a/docs/version-specific/supported-software/p/Primer3.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Primer3 - -Primer3 is a widely used program for designing PCR primers (PCR = 'Polymerase Chain Reaction'). PCR is an essential and ubiquitous tool in genetics and molecular biology. Primer3 can also design hybridization probes and sequencing primers. - -*homepage*: - -version | toolchain ---------|---------- -``2.3.7`` | ``intel/2017b`` -``2.4.0`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``2.4.0`` | ``intel/2018b`` -``2.5.0`` | ``GCC/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/ProbABEL.md b/docs/version-specific/supported-software/p/ProbABEL.md deleted file mode 100644 index bf8d8156d4..0000000000 --- a/docs/version-specific/supported-software/p/ProbABEL.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ProbABEL - -Tool for genome-wide association analysis of imputed genetic data. - -*homepage*: - -version | toolchain ---------|---------- -``0.5.0`` | ``GCCcore/9.3.0`` -``0.5.0`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/ProjectQ.md b/docs/version-specific/supported-software/p/ProjectQ.md deleted file mode 100644 index f47a8ca3e6..0000000000 --- a/docs/version-specific/supported-software/p/ProjectQ.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ProjectQ - -An open source software framework for quantum computing - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.4.2`` | ``-Python-3.6.6`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/ProtHint.md b/docs/version-specific/supported-software/p/ProtHint.md deleted file mode 100644 index 11508eadbf..0000000000 --- a/docs/version-specific/supported-software/p/ProtHint.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ProtHint - -ProtHint is a pipeline for predicting and scoring hints (in the form of introns, start and stop codons) in the genome of interest by mapping and spliced aligning predicted genes to a database of reference protein sequences. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.4.0`` | ``-Python-3.7.2`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``2.4.0`` | ``-Python-3.7.4`` | ``iccifort/2019.5.281`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/ProteinMPNN.md b/docs/version-specific/supported-software/p/ProteinMPNN.md index 9595f51cb1..d283cd30b5 100644 --- a/docs/version-specific/supported-software/p/ProteinMPNN.md +++ b/docs/version-specific/supported-software/p/ProteinMPNN.md @@ -4,7 +4,7 @@ search: --- # ProteinMPNN -A deep learning based protein sequence design method is described that is widely applicable to current design challenges and shows outstanding performance in both in silico and experimental tests. +A deep learning based protein sequence design method is described that is widely applicable to current design challenges and shows outstanding performance in both in silico and experimental tests. *homepage*: diff --git a/docs/version-specific/supported-software/p/Proteinortho.md b/docs/version-specific/supported-software/p/Proteinortho.md index a058197677..3b3db5c5d5 100644 --- a/docs/version-specific/supported-software/p/Proteinortho.md +++ b/docs/version-specific/supported-software/p/Proteinortho.md @@ -6,12 +6,12 @@ search: Proteinortho is a tool to detect orthologous genes within different species. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``5.16b`` | ``-Python-3.6.4-Perl-5.26.1`` | ``foss/2018a`` -``6.2.3`` | | ``gompi/2021b`` +version | toolchain +--------|---------- +``6.2.3`` | ``gompi/2021b`` +``6.3.2`` | ``gompi/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PuLP.md b/docs/version-specific/supported-software/p/PuLP.md index 1dbd431371..6be6e6e983 100644 --- a/docs/version-specific/supported-software/p/PuLP.md +++ b/docs/version-specific/supported-software/p/PuLP.md @@ -13,6 +13,7 @@ version | toolchain ``2.5.1`` | ``foss/2021a`` ``2.7.0`` | ``foss/2022b`` ``2.8.0`` | ``foss/2023a`` +``2.8.0`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyAMG.md b/docs/version-specific/supported-software/p/PyAMG.md index 0bbb75794c..61afbebfd1 100644 --- a/docs/version-specific/supported-software/p/PyAMG.md +++ b/docs/version-specific/supported-software/p/PyAMG.md @@ -6,15 +6,15 @@ search: PyAMG is a library of Algebraic Multigrid (AMG) solvers with a convenient Python interface. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0.1`` | ``-Python-2.7.11`` | ``intel/2016a`` -``4.0.0`` | | ``foss/2020b`` -``4.0.0`` | | ``intel/2020b`` -``4.2.3`` | | ``foss/2021a`` -``5.1.0`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``4.0.0`` | ``foss/2020b`` +``4.0.0`` | ``intel/2020b`` +``4.2.3`` | ``foss/2021a`` +``5.1.0`` | ``foss/2023a`` +``5.2.1`` | ``gfbf/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyAPS3.md b/docs/version-specific/supported-software/p/PyAPS3.md deleted file mode 100644 index cc5795abf3..0000000000 --- a/docs/version-specific/supported-software/p/PyAPS3.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PyAPS3 - -Python 3 Atmospheric Phase Screen - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20190407`` | ``-Python-3.7.2`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PyAV.md b/docs/version-specific/supported-software/p/PyAV.md index 8c6a9e3569..bb05d079c1 100644 --- a/docs/version-specific/supported-software/p/PyAV.md +++ b/docs/version-specific/supported-software/p/PyAV.md @@ -11,6 +11,7 @@ PyAV is a Pythonic binding for FFmpeg. We aim to provide all of the power and co version | toolchain --------|---------- ``10.0.0`` | ``GCCcore/11.3.0`` +``11.0.0`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyBerny.md b/docs/version-specific/supported-software/p/PyBerny.md index 6a5db2509c..dbd9ea8541 100644 --- a/docs/version-specific/supported-software/p/PyBerny.md +++ b/docs/version-specific/supported-software/p/PyBerny.md @@ -8,11 +8,11 @@ PyBerny is an optimizer of molecular geometries with respect to the total energy *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.6.2`` | ``-Python-3.8.2`` | ``intel/2020a`` -``0.6.3`` | | ``foss/2022a`` -``0.6.3`` | | ``foss/2022b`` +version | toolchain +--------|---------- +``0.6.3`` | ``foss/2022a`` +``0.6.3`` | ``foss/2022b`` +``0.6.3`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyBioLib.md b/docs/version-specific/supported-software/p/PyBioLib.md index 2afdb6ada1..5e2ebe018e 100644 --- a/docs/version-specific/supported-software/p/PyBioLib.md +++ b/docs/version-specific/supported-software/p/PyBioLib.md @@ -10,7 +10,9 @@ PyBioLib is a Python package for running BioLib applications from Python scripts version | toolchain --------|---------- +``1.1.2250`` | ``GCCcore/12.3.0`` ``1.1.988`` | ``GCCcore/11.3.0`` +``1.2.205`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyCUDA.md b/docs/version-specific/supported-software/p/PyCUDA.md index 385a4fafce..bd6001ea78 100644 --- a/docs/version-specific/supported-software/p/PyCUDA.md +++ b/docs/version-specific/supported-software/p/PyCUDA.md @@ -6,17 +6,13 @@ search: PyCUDA lets you access Nvidia’s CUDA parallel computation API from Python. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2016.1.2`` | ``-Python-2.7.12`` | ``intel/2016b`` -``2017.1.1`` | ``-CUDA-9.0.176-Python-2.7.14`` | ``foss/2017b`` -``2017.1.1`` | ``-Python-2.7.14`` | ``intel/2018a`` -``2018.1`` | ``-Python-3.6.4-CUDA-9.1.85`` | ``intel/2018a`` -``2019.1.2`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``2019.1.2`` | ``-Python-3.7.4`` | ``intelcuda/2019b`` ``2020.1`` | | ``fosscuda/2020b`` +``2024.1`` | ``-CUDA-11.7.0`` | ``foss/2022a`` +``2024.1`` | ``-CUDA-12.1.1`` | ``gfbf/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyCairo.md b/docs/version-specific/supported-software/p/PyCairo.md index 7cdc207025..7804f1b4e1 100644 --- a/docs/version-specific/supported-software/p/PyCairo.md +++ b/docs/version-specific/supported-software/p/PyCairo.md @@ -6,26 +6,17 @@ search: Python bindings for the cairo library -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.10.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``1.16.1`` | ``-Python-3.6.3`` | ``foss/2017b`` -``1.16.2`` | ``-Python-2.7.14`` | ``intel/2017b`` -``1.18.0`` | ``-Python-3.7.2`` | ``GCCcore/8.2.0`` -``1.18.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.18.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.18.0`` | ``-Python-2.7.14`` | ``intel/2018a`` -``1.18.2`` | | ``GCCcore/8.3.0`` -``1.18.2`` | | ``GCCcore/9.3.0`` -``1.20.0`` | | ``GCCcore/10.2.0`` -``1.20.1`` | | ``GCCcore/10.3.0`` -``1.20.1`` | | ``GCCcore/11.2.0`` -``1.21.0`` | | ``GCCcore/11.3.0`` -``1.24.0`` | | ``GCCcore/12.2.0`` -``1.25.0`` | | ``GCCcore/12.3.0`` -``1.25.1`` | | ``GCCcore/13.2.0`` +version | toolchain +--------|---------- +``1.20.0`` | ``GCCcore/10.2.0`` +``1.20.1`` | ``GCCcore/10.3.0`` +``1.20.1`` | ``GCCcore/11.2.0`` +``1.21.0`` | ``GCCcore/11.3.0`` +``1.24.0`` | ``GCCcore/12.2.0`` +``1.25.0`` | ``GCCcore/12.3.0`` +``1.25.1`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyCharm.md b/docs/version-specific/supported-software/p/PyCharm.md index 318c59c87d..2f44d2a5d5 100644 --- a/docs/version-specific/supported-software/p/PyCharm.md +++ b/docs/version-specific/supported-software/p/PyCharm.md @@ -10,7 +10,6 @@ PyCharm Community Edition: Python IDE for Professional Developers version | toolchain --------|---------- -``2017.2.3`` | ``system`` ``2019.3.1`` | ``system`` ``2021.1.1`` | ``system`` ``2022.2.2`` | ``system`` diff --git a/docs/version-specific/supported-software/p/PyCheMPS2.md b/docs/version-specific/supported-software/p/PyCheMPS2.md index e7b90cf3fc..2586e82e67 100644 --- a/docs/version-specific/supported-software/p/PyCheMPS2.md +++ b/docs/version-specific/supported-software/p/PyCheMPS2.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``1.8.12`` | ``foss/2022a`` ``1.8.12`` | ``foss/2022b`` +``1.8.12`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyCifRW.md b/docs/version-specific/supported-software/p/PyCifRW.md deleted file mode 100644 index e24e7aaf49..0000000000 --- a/docs/version-specific/supported-software/p/PyCifRW.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PyCifRW - -PyCIFRW provides support for reading and writing CIF (Crystallographic Information Format) files using Python. - -*homepage*: - -version | toolchain ---------|---------- -``4.4.2`` | ``GCCcore/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PyCogent.md b/docs/version-specific/supported-software/p/PyCogent.md deleted file mode 100644 index 2fb2e707a0..0000000000 --- a/docs/version-specific/supported-software/p/PyCogent.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PyCogent - -PyCogent is a software library for genomic biology. It is a fully integrated and thoroughly tested framework for: controlling third-party applications; devising workflows; querying databases; conducting novel probabilistic analyses of biological sequence evolution; and generating publication quality graphics. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.5.3`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.9`` | ``-Python-2.7.12`` | ``foss/2016b`` -``1.9`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.9`` | ``-Python-2.7.12`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PyDatastream.md b/docs/version-specific/supported-software/p/PyDatastream.md deleted file mode 100644 index 25f458bb84..0000000000 --- a/docs/version-specific/supported-software/p/PyDatastream.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PyDatastream - -Lightweight SOAP client - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.5.1`` | ``-Python-3.6.4`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PyFFmpeg.md b/docs/version-specific/supported-software/p/PyFFmpeg.md deleted file mode 100644 index c256f4c497..0000000000 --- a/docs/version-specific/supported-software/p/PyFFmpeg.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PyFFmpeg - -Python FFmpeg wrapper - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1beta`` | ``-Python-2.7.10`` | ``gimkl/2.11.5`` -``2.1beta`` | ``-Python-2.7.11`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PyFMI.md b/docs/version-specific/supported-software/p/PyFMI.md deleted file mode 100644 index 940a4100fe..0000000000 --- a/docs/version-specific/supported-software/p/PyFMI.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PyFMI - -PyFMI is a package for loading and interacting with Functional Mock-Up Units (FMUs), which are compiled dynamic models compliant with the Functional Mock-Up Interface (FMI) - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.4.0`` | ``-Python-2.7.15`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PyFR.md b/docs/version-specific/supported-software/p/PyFR.md deleted file mode 100644 index 86f353f811..0000000000 --- a/docs/version-specific/supported-software/p/PyFR.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PyFR - -PyFR is an open-source Python based framework for solving advection-diffusion type problems on streaming architectures using the Flux Reconstruction approach of Huynh. The framework is designed to solve a range of governing systems on mixed unstructured grids containing various element types. It is also designed to target a range of hardware platforms via use of an in-built domain specific language derived from the Mako templating engine. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.7.6`` | ``-Python-3.6.4-CUDA-9.1.85`` | ``intel/2018a`` -``1.9.0`` | ``-Python-3.7.4`` | ``intelcuda/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PyGEOS.md b/docs/version-specific/supported-software/p/PyGEOS.md index ed9abf832e..14e0bf52d6 100644 --- a/docs/version-specific/supported-software/p/PyGEOS.md +++ b/docs/version-specific/supported-software/p/PyGEOS.md @@ -8,13 +8,11 @@ PyGEOS is a C/Python library with vectorized geometry functions. The geometry op *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.2`` | | ``intel/2020b`` -``0.14`` | | ``gfbf/2022b`` -``0.14`` | | ``gfbf/2023a`` -``0.7.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.8`` | ``-Python-3.8.2`` | ``foss/2020a`` +version | toolchain +--------|---------- +``0.10.2`` | ``intel/2020b`` +``0.14`` | ``gfbf/2022b`` +``0.14`` | ``gfbf/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyGObject.md b/docs/version-specific/supported-software/p/PyGObject.md index 98be185b00..233b2d375b 100644 --- a/docs/version-specific/supported-software/p/PyGObject.md +++ b/docs/version-specific/supported-software/p/PyGObject.md @@ -4,23 +4,16 @@ search: --- # PyGObject -Python Bindings for GLib/GObject/GIO/GTK+ +PyGObject is a Python package which provides bindings for GObject based libraries such as GTK, GStreamer, WebKitGTK, GLib, GIO and many more. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.28.6`` | ``-Python-2.7.11`` | ``intel/2016a`` -``2.28.6`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.28.7`` | ``-Python-2.7.15`` | ``foss/2018b`` -``2.28.7`` | ``-Python-2.7.14`` | ``intel/2018a`` -``3.34.0`` | ``-Python-3.7.2`` | ``GCCcore/8.2.0`` -``3.34.0`` | ``-Python-2.7.16`` | ``GCCcore/8.3.0`` -``3.34.0`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``3.42.1`` | | ``GCCcore/11.3.0`` -``3.44.1`` | | ``GCCcore/12.2.0`` -``3.46.0`` | | ``GCCcore/12.3.0`` -``3.46.0`` | | ``GCCcore/13.2.0`` +version | toolchain +--------|---------- +``3.42.1`` | ``GCCcore/11.3.0`` +``3.44.1`` | ``GCCcore/12.2.0`` +``3.46.0`` | ``GCCcore/12.3.0`` +``3.46.0`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyGTK.md b/docs/version-specific/supported-software/p/PyGTK.md deleted file mode 100644 index 9b91e64d6f..0000000000 --- a/docs/version-specific/supported-software/p/PyGTK.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PyGTK - -PyGTK lets you to easily create programs with a graphical user interface using the Python programming language. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.24.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``2.24.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``2.24.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.24.0`` | ``-Python-2.7.14`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PyGTS.md b/docs/version-specific/supported-software/p/PyGTS.md deleted file mode 100644 index dff7942eea..0000000000 --- a/docs/version-specific/supported-software/p/PyGTS.md +++ /dev/null @@ -1,21 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PyGTS - -PyGTS is a python package used to construct, manipulate, and perform computations on triangulated surfaces. It is a hand-crafted and pythonic binding for the GNU Triangulated Surface (GTS) Library. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.3.1`` | ``-Python-2.7.11`` | ``foss/2016a`` -``0.3.1`` | ``-Python-2.7.12`` | ``foss/2016b`` -``0.3.1`` | ``-Python-2.7.11`` | ``intel/2016a`` -``0.3.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.3.1`` | ``-Python-2.7.14`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PyGWAS.md b/docs/version-specific/supported-software/p/PyGWAS.md deleted file mode 100644 index 24adb418ba..0000000000 --- a/docs/version-specific/supported-software/p/PyGWAS.md +++ /dev/null @@ -1,23 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PyGWAS - -PyGWAS is a library for running Genome Wide Association studies. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``1.3.1`` | ``-Python-2.7.11`` | ``foss/2016a`` -``1.4.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``1.5.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``1.6.1`` | ``-Python-2.7.11`` | ``foss/2016a`` -``1.6.1`` | ``-Python-2.7.11`` | ``intel/2016a`` -``1.7.1`` | ``-Python-2.7.13`` | ``foss/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PyHMMER.md b/docs/version-specific/supported-software/p/PyHMMER.md index d12b0f1139..679ee79c0a 100644 --- a/docs/version-specific/supported-software/p/PyHMMER.md +++ b/docs/version-specific/supported-software/p/PyHMMER.md @@ -4,12 +4,13 @@ search: --- # PyHMMER -HMMER is a biological sequence analysis tool that uses profile hidden Markov models to search for sequence homologs. HMMER3 is developed and maintained by the Eddy/Rivas Laboratory at Harvard University. pyhmmer is a Python package, implemented using the Cython language, that provides bindings to HMMER3. It directly interacts with the HMMER internals, which has the following advantages over CLI wrappers (like hmmer-py) +HMMER is a biological sequence analysis tool that uses profile hidden Markov models to search for sequence homologs. HMMER3 is developed and maintained by the Eddy/Rivas Laboratory at Harvard University. pyhmmer is a Python package, implemented using the Cython language, that provides bindings to HMMER3. It directly interacts with the HMMER internals, which has the following advantages over CLI wrappers (like hmmer-py) *homepage*: version | toolchain --------|---------- +``0.10.15`` | ``gompi/2023b`` ``0.10.6`` | ``gompi/2023a`` diff --git a/docs/version-specific/supported-software/p/PyMC3.md b/docs/version-specific/supported-software/p/PyMC3.md index 6ad06b3ab8..9ab4232e37 100644 --- a/docs/version-specific/supported-software/p/PyMC3.md +++ b/docs/version-specific/supported-software/p/PyMC3.md @@ -4,18 +4,16 @@ search: --- # PyMC3 -Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano +Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.11.1`` | | ``foss/2021b`` -``3.11.1`` | | ``fosscuda/2020b`` -``3.11.1`` | | ``intel/2020b`` -``3.11.1`` | | ``intel/2021b`` -``3.8`` | ``-Python-3.7.4`` | ``foss/2019b`` -``3.8`` | ``-Python-3.7.4`` | ``intel/2019b`` +version | toolchain +--------|---------- +``3.11.1`` | ``foss/2021b`` +``3.11.1`` | ``fosscuda/2020b`` +``3.11.1`` | ``intel/2020b`` +``3.11.1`` | ``intel/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyMOL.md b/docs/version-specific/supported-software/p/PyMOL.md index 0ef8a28ae9..b92f2b5641 100644 --- a/docs/version-specific/supported-software/p/PyMOL.md +++ b/docs/version-specific/supported-software/p/PyMOL.md @@ -4,7 +4,7 @@ search: --- # PyMOL -PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source PyMOL is free to everyone! +PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source PyMOL is free to everyone! *homepage*: diff --git a/docs/version-specific/supported-software/p/PyNAST.md b/docs/version-specific/supported-software/p/PyNAST.md deleted file mode 100644 index 119803952d..0000000000 --- a/docs/version-specific/supported-software/p/PyNAST.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PyNAST - -PyNAST is a reimplementation of the NAST sequence aligner, which has become a popular tool for adding new 16s rRNA sequences to existing 16s rRNA alignments. This reimplementation is more flexible, faster, and easier to install and maintain than the original NAST implementation. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.2`` | ``-Python-2.7.12`` | ``foss/2016b`` -``1.2.2`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.2.2`` | ``-Python-2.7.12`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PyOpenCL.md b/docs/version-specific/supported-software/p/PyOpenCL.md index 33c2692533..c63b8a0d86 100644 --- a/docs/version-specific/supported-software/p/PyOpenCL.md +++ b/docs/version-specific/supported-software/p/PyOpenCL.md @@ -10,7 +10,6 @@ PyOpenCL lets you access GPUs and other massively parallel compute devices from version | versionsuffix | toolchain --------|---------------|---------- -``2020.2.2`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` ``2021.1.2`` | | ``foss/2020b`` ``2021.1.2`` | | ``fosscuda/2020b`` ``2021.1.2`` | | ``intel/2020b`` diff --git a/docs/version-specific/supported-software/p/PyOpenGL.md b/docs/version-specific/supported-software/p/PyOpenGL.md index 772446ffdd..70e822f5e3 100644 --- a/docs/version-specific/supported-software/p/PyOpenGL.md +++ b/docs/version-specific/supported-software/p/PyOpenGL.md @@ -8,21 +8,13 @@ PyOpenGL is the most common cross platform Python binding to OpenGL and related *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.1.1a1`` | | ``GCCcore/8.2.0`` -``3.1.1a1`` | ``-Python-2.7.12`` | ``foss/2016b`` -``3.1.1a1`` | ``-Python-2.7.14`` | ``foss/2018a`` -``3.1.1a1`` | ``-Python-2.7.11`` | ``intel/2016a`` -``3.1.1a1`` | ``-Python-2.7.14`` | ``intel/2017b`` -``3.1.3b2`` | ``-Python-2.7.15`` | ``foss/2018b`` -``3.1.3b2`` | ``-Python-2.7.14`` | ``intel/2018a`` -``3.1.5`` | | ``GCCcore/10.2.0`` -``3.1.5`` | | ``GCCcore/10.3.0`` -``3.1.5`` | | ``GCCcore/8.3.0`` -``3.1.6`` | | ``GCCcore/11.2.0`` -``3.1.6`` | | ``GCCcore/11.3.0`` -``3.1.7`` | | ``GCCcore/12.3.0`` +version | toolchain +--------|---------- +``3.1.5`` | ``GCCcore/10.2.0`` +``3.1.5`` | ``GCCcore/10.3.0`` +``3.1.6`` | ``GCCcore/11.2.0`` +``3.1.6`` | ``GCCcore/11.3.0`` +``3.1.7`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyQt-builder.md b/docs/version-specific/supported-software/p/PyQt-builder.md index 8c0d56b888..be60b10cb0 100644 --- a/docs/version-specific/supported-software/p/PyQt-builder.md +++ b/docs/version-specific/supported-software/p/PyQt-builder.md @@ -4,13 +4,14 @@ search: --- # PyQt-builder -PyQt-builder is the PEP 517 compliant build system for PyQt and projects that extend PyQt. It extends the SIP build system and uses Qt’s qmake to perform the actual compilation and installation of extension modules. +PyQt-builder is the PEP 517 compliant build system for PyQt and projects that extend PyQt. It extends the SIP build system and uses Qt’s qmake to perform the actual compilation and installation of extension modules. *homepage*: version | toolchain --------|---------- ``1.15.4`` | ``GCCcore/12.3.0`` +``1.16.4`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyQt.md b/docs/version-specific/supported-software/p/PyQt.md deleted file mode 100644 index 9ec781725a..0000000000 --- a/docs/version-specific/supported-software/p/PyQt.md +++ /dev/null @@ -1,23 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PyQt - -PyQt is a set of Python v2 and v3 bindings for Digia's Qt application framework. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``4.11.4`` | ``-Python-2.7.11`` | ``intel/2016a`` -``4.11.4`` | ``-Python-2.7.12`` | ``intel/2016b`` -``4.12`` | ``-Python-2.7.12`` | ``foss/2016b`` -``4.12`` | ``-Python-2.7.12`` | ``intel/2016b`` -``4.12`` | ``-Python-2.7.13`` | ``intel/2017a`` -``4.12.1`` | ``-Python-2.7.14`` | ``foss/2018a`` -``4.12.3`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PyQt5.md b/docs/version-specific/supported-software/p/PyQt5.md index cbc16d5a45..6ba0df71b1 100644 --- a/docs/version-specific/supported-software/p/PyQt5.md +++ b/docs/version-specific/supported-software/p/PyQt5.md @@ -4,33 +4,20 @@ search: --- # PyQt5 -PyQt5 is a set of Python bindings for v5 of the Qt application framework from The Qt Company. +PyQt5 is a set of Python bindings for v5 of the Qt application framework from The Qt Company. This bundle includes PyQtWebEngine, a set of Python bindings for The Qt Company’s Qt WebEngine framework. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``5.11.3`` | ``-Python-3.6.6`` | ``foss/2018b`` -``5.11.3`` | ``-Python-3.6.6`` | ``intel/2018b`` -``5.12.1`` | ``-Python-2.7.15`` | ``GCCcore/8.2.0`` -``5.12.1`` | ``-Python-3.7.2`` | ``GCCcore/8.2.0`` -``5.13.2`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``5.15.1`` | | ``GCCcore/10.2.0`` -``5.15.1`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` -``5.15.10`` | | ``GCCcore/12.3.0`` -``5.15.4`` | | ``GCCcore/10.2.0`` -``5.15.4`` | | ``GCCcore/10.3.0`` -``5.15.4`` | | ``GCCcore/11.2.0`` -``5.15.5`` | | ``GCCcore/11.3.0`` -``5.15.7`` | | ``GCCcore/12.2.0`` -``5.7`` | ``-Python-2.7.11`` | ``foss/2016a`` -``5.7.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``5.8.2`` | ``-Python-2.7.13`` | ``intel/2017a`` -``5.9.2`` | ``-Python-2.7.14`` | ``foss/2017b`` -``5.9.2`` | ``-Python-3.6.4`` | ``foss/2018a`` -``5.9.2`` | ``-Python-2.7.14`` | ``intel/2017b`` -``5.9.2`` | ``-Python-2.7.14`` | ``intel/2018a`` -``5.9.2`` | ``-Python-3.6.4`` | ``intel/2018a`` +version | toolchain +--------|---------- +``5.15.1`` | ``GCCcore/10.2.0`` +``5.15.10`` | ``GCCcore/12.3.0`` +``5.15.10`` | ``GCCcore/13.2.0`` +``5.15.4`` | ``GCCcore/10.2.0`` +``5.15.4`` | ``GCCcore/10.3.0`` +``5.15.4`` | ``GCCcore/11.2.0`` +``5.15.5`` | ``GCCcore/11.3.0`` +``5.15.7`` | ``GCCcore/12.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyQtGraph.md b/docs/version-specific/supported-software/p/PyQtGraph.md index 04b3e14e7f..480d08b528 100644 --- a/docs/version-specific/supported-software/p/PyQtGraph.md +++ b/docs/version-specific/supported-software/p/PyQtGraph.md @@ -4,22 +4,17 @@ search: --- # PyQtGraph -PyQtGraph is a pure-python graphics and GUI library built on PyQt4/PySide and numpy. +PyQtGraph is a pure-python graphics and GUI library built on PyQt5/PySide2 and numpy. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.10.0`` | ``-Python-3.6.4`` | ``intel/2018a`` -``0.10.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``0.10.0`` | ``-Python-3.7.2`` | ``intel/2019a`` -``0.11.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.11.1`` | | ``foss/2020b`` -``0.11.1`` | | ``fosscuda/2020b`` -``0.12.3`` | | ``foss/2021a`` -``0.13.3`` | | ``foss/2022a`` -``0.13.7`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``0.11.1`` | ``foss/2020b`` +``0.11.1`` | ``fosscuda/2020b`` +``0.12.3`` | ``foss/2021a`` +``0.13.3`` | ``foss/2022a`` +``0.13.7`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyRETIS.md b/docs/version-specific/supported-software/p/PyRETIS.md index ddc00316cd..eaaef8489a 100644 --- a/docs/version-specific/supported-software/p/PyRETIS.md +++ b/docs/version-specific/supported-software/p/PyRETIS.md @@ -8,13 +8,10 @@ PyRETIS is a Python library for rare event molecular simulations with emphasis o *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``2.5.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``2.5.0`` | | ``foss/2020b`` -``2.5.0`` | ``-Python-3.8.2`` | ``intel/2020a`` -``2.5.0`` | | ``intel/2020b`` +version | toolchain +--------|---------- +``2.5.0`` | ``foss/2020b`` +``2.5.0`` | ``intel/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyRe.md b/docs/version-specific/supported-software/p/PyRe.md deleted file mode 100644 index 1aaa54d44f..0000000000 --- a/docs/version-specific/supported-software/p/PyRe.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PyRe - -PyRe (Python Reliability) is a Python module for structural reliability analysis. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``5.0.3-20190221`` | ``-Python-3.7.4`` | ``foss/2019b`` -``5.0.3-20190221`` | ``-Python-3.7.4`` | ``intel/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PyRosetta.md b/docs/version-specific/supported-software/p/PyRosetta.md index 4f8d541ef2..2fc128857b 100644 --- a/docs/version-specific/supported-software/p/PyRosetta.md +++ b/docs/version-specific/supported-software/p/PyRosetta.md @@ -8,10 +8,10 @@ PyRosetta is an interactive Python-based interface to the powerful Rosetta molec *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.release-292`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``4.release-384`` | | ``gompi/2022a`` +version | toolchain +--------|---------- +``4.release-384`` | ``gompi/2022a`` +``4.release-387`` | ``gompi/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PySAT.md b/docs/version-specific/supported-software/p/PySAT.md index 1d85020673..04bccf156b 100644 --- a/docs/version-specific/supported-software/p/PySAT.md +++ b/docs/version-specific/supported-software/p/PySAT.md @@ -6,12 +6,11 @@ search: PySAT is a Python toolkit, which aims at providing a simple and unified interface to a number of state-of-art Boolean satisfiability (SAT) solvers as well as to a variety of cardinality and pseudo-Boolean encodings. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1.6.dev11`` | ``-Python-3.8.2`` | ``GCC/9.3.0`` -``0.1.7.dev1`` | | ``GCC/10.2.0`` +version | toolchain +--------|---------- +``0.1.7.dev1`` | ``GCC/10.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PySCF.md b/docs/version-specific/supported-software/p/PySCF.md index e02f4068d6..d2db46c4fe 100644 --- a/docs/version-specific/supported-software/p/PySCF.md +++ b/docs/version-specific/supported-software/p/PySCF.md @@ -8,14 +8,14 @@ PySCF is an open-source collection of electronic structure modules powered by Py *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.6.3`` | ``-Python-3.7.2`` | ``foss/2019a`` -``1.7.6`` | | ``foss/2020b`` -``1.7.6`` | | ``foss/2021a`` -``1.7.6`` | | ``gomkl/2021a`` -``2.1.1`` | | ``foss/2022a`` -``2.4.0`` | | ``foss/2022b`` +version | toolchain +--------|---------- +``1.7.6`` | ``foss/2020b`` +``1.7.6`` | ``foss/2021a`` +``1.7.6`` | ``gomkl/2021a`` +``2.1.1`` | ``foss/2022a`` +``2.4.0`` | ``foss/2022b`` +``2.7.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyStan.md b/docs/version-specific/supported-software/p/PyStan.md index aa3697638c..c3bdc1d67b 100644 --- a/docs/version-specific/supported-software/p/PyStan.md +++ b/docs/version-specific/supported-software/p/PyStan.md @@ -8,12 +8,11 @@ Python interface to Stan, a package for Bayesian inference using the No-U-Turn *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.19.0.0`` | ``-Python-3.6.4`` | ``intel/2018a`` -``2.19.1.1`` | | ``foss/2020b`` -``2.19.1.1`` | | ``intel/2020b`` -``3.5.0`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``2.19.1.1`` | ``foss/2020b`` +``2.19.1.1`` | ``intel/2020b`` +``3.5.0`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyTables.md b/docs/version-specific/supported-software/p/PyTables.md index 8103660b8c..ed620d81b6 100644 --- a/docs/version-specific/supported-software/p/PyTables.md +++ b/docs/version-specific/supported-software/p/PyTables.md @@ -6,37 +6,15 @@ search: PyTables is a package for managing hierarchical datasets and designed to efficiently and easily cope with extremely large amounts of data. PyTables is built on top of the HDF5 library, using the Python language and the NumPy package. It features an object-oriented interface that, combined with C extensions for the performance-critical parts of the code (generated using Cython), makes it a fast, yet extremely easy to use tool for interactively browse, process and search very large amounts of data. One important feature of PyTables is that it optimizes memory and disk resources so that data takes much less space (specially if on-flight compression is used) than other solutions such as relational or object oriented databases. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``3.2.2`` | ``-Python-2.7.12`` | ``foss/2016b`` -``3.2.3.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``3.3.0`` | ``-Python-2.7.12`` | ``foss/2016b`` -``3.3.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``3.3.0`` | ``-Python-3.5.2`` | ``intel/2016b`` -``3.4.2`` | ``-Python-2.7.13`` | ``foss/2017a`` -``3.4.2`` | ``-Python-3.6.4`` | ``foss/2018a`` -``3.4.2`` | ``-Python-3.6.1`` | ``intel/2017a`` -``3.4.2`` | ``-Python-3.6.3`` | ``intel/2017b`` -``3.4.2`` | ``-Python-3.6.4`` | ``intel/2018a`` -``3.4.4`` | ``-Python-3.5.1`` | ``foss/2016a`` -``3.4.4`` | ``-Python-2.7.15`` | ``foss/2018b`` -``3.4.4`` | ``-Python-3.6.6`` | ``foss/2018b`` -``3.4.4`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` -``3.4.4`` | ``-Python-3.6.6`` | ``intel/2018b`` ``3.5.2`` | ``-Python-2.7.18`` | ``foss/2020b`` -``3.5.2`` | ``-Python-2.7.14`` | ``intel/2018a`` -``3.5.2`` | | ``intel/2019a`` -``3.5.2`` | ``-Python-2.7.16`` | ``intel/2019b`` -``3.6.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``3.6.1`` | ``-Python-3.8.2`` | ``foss/2020a`` ``3.6.1`` | | ``foss/2020b`` ``3.6.1`` | | ``foss/2021a`` ``3.6.1`` | | ``foss/2021b`` -``3.6.1`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` ``3.6.1`` | | ``fosscuda/2020b`` -``3.6.1`` | ``-Python-3.8.2`` | ``intel/2020a`` ``3.6.1`` | | ``intel/2020b`` ``3.8.0`` | | ``foss/2022a`` ``3.8.0`` | | ``foss/2022b`` diff --git a/docs/version-specific/supported-software/p/PyTorch-Geometric.md b/docs/version-specific/supported-software/p/PyTorch-Geometric.md index b229cda3b4..ee63e56b1e 100644 --- a/docs/version-specific/supported-software/p/PyTorch-Geometric.md +++ b/docs/version-specific/supported-software/p/PyTorch-Geometric.md @@ -10,10 +10,7 @@ PyTorch Geometric (PyG) is a geometric deep learning extension library for PyTor version | versionsuffix | toolchain --------|---------------|---------- -``1.3.2`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.4.2`` | ``-Python-3.7.4-PyTorch-1.4.0`` | ``foss/2019b`` ``1.6.3`` | | ``foss/2020b`` -``1.6.3`` | ``-Python-3.7.4-PyTorch-1.8.1`` | ``fosscuda/2019b`` ``1.6.3`` | | ``fosscuda/2020b`` ``2.0.1`` | ``-PyTorch-1.9.0`` | ``fosscuda/2020b`` ``2.1.0`` | ``-PyTorch-1.12.1-CUDA-11.3.1`` | ``foss/2021a`` diff --git a/docs/version-specific/supported-software/p/PyTorch-Lightning.md b/docs/version-specific/supported-software/p/PyTorch-Lightning.md index 8a12604c98..b277a12d02 100644 --- a/docs/version-specific/supported-software/p/PyTorch-Lightning.md +++ b/docs/version-specific/supported-software/p/PyTorch-Lightning.md @@ -16,6 +16,8 @@ version | versionsuffix | toolchain ``1.7.7`` | | ``foss/2022a`` ``1.8.4`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``1.8.4`` | | ``foss/2022a`` +``1.8.4`` | | ``foss/2022b`` +``1.9.5`` | | ``foss/2023b`` ``2.1.2`` | | ``foss/2022b`` ``2.2.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``2.2.1`` | | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/p/PyTorch.md b/docs/version-specific/supported-software/p/PyTorch.md index af8cf090ee..e6def51caa 100644 --- a/docs/version-specific/supported-software/p/PyTorch.md +++ b/docs/version-specific/supported-software/p/PyTorch.md @@ -6,18 +6,10 @@ search: Tensors and Dynamic neural networks in Python with strong GPU acceleration. PyTorch is a deep learning framework that puts Python first. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``0.3.1`` | ``-Python-3.6.4-CUDA-9.1.85`` | ``foss/2018a`` -``0.3.1`` | ``-Python-2.7.14`` | ``fosscuda/2017b`` -``0.3.1`` | ``-Python-3.6.3`` | ``fosscuda/2017b`` -``0.3.1`` | ``-Python-3.6.4`` | ``intel/2018a`` -``0.4.1`` | ``-Python-3.6.4`` | ``intel/2018a`` -``1.0.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.0.1`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` -``1.1.0`` | ``-Python-3.7.2`` | ``foss/2019a`` ``1.10.0`` | ``-CUDA-11.3.1`` | ``foss/2021a`` ``1.10.0`` | | ``foss/2021a`` ``1.10.0`` | | ``fosscuda/2020b`` @@ -34,22 +26,10 @@ version | versionsuffix | toolchain ``1.13.1`` | | ``foss/2022a`` ``1.13.1`` | ``-CUDA-11.7.0`` | ``foss/2022b`` ``1.13.1`` | | ``foss/2022b`` -``1.2.0`` | ``-Python-3.7.2`` | ``foss/2019a`` -``1.2.0`` | ``-Python-3.7.2`` | ``fosscuda/2019a`` -``1.3.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.3.1`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` ``1.3.1`` | | ``fosscuda/2020b`` -``1.4.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.4.0`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``1.6.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.6.0`` | ``-Python-3.7.4-imkl`` | ``fosscuda/2019b`` -``1.6.0`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` ``1.7.1`` | | ``foss/2020b`` -``1.7.1`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``1.7.1`` | ``-Python-3.8.2`` | ``fosscuda/2020a`` ``1.7.1`` | | ``fosscuda/2020b`` ``1.8.1`` | | ``foss/2020b`` -``1.8.1`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` ``1.8.1`` | | ``fosscuda/2020b`` ``1.9.0`` | | ``foss/2020b`` ``1.9.0`` | ``-imkl`` | ``fosscuda/2020b`` diff --git a/docs/version-specific/supported-software/p/PyVCF.md b/docs/version-specific/supported-software/p/PyVCF.md deleted file mode 100644 index 6ed7bf8fda..0000000000 --- a/docs/version-specific/supported-software/p/PyVCF.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PyVCF - -A Variant Call Format reader for Python. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.6.8`` | ``-Python-2.7.16`` | ``GCC/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PyVista.md b/docs/version-specific/supported-software/p/PyVista.md index 2c50d429ce..19ccf2d2bf 100644 --- a/docs/version-specific/supported-software/p/PyVista.md +++ b/docs/version-specific/supported-software/p/PyVista.md @@ -10,6 +10,7 @@ search: version | toolchain --------|---------- +``0.43.8`` | ``foss/2022a`` ``0.43.8`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/p/PyWavelets.md b/docs/version-specific/supported-software/p/PyWavelets.md index f55ef4dede..f38d192079 100644 --- a/docs/version-specific/supported-software/p/PyWavelets.md +++ b/docs/version-specific/supported-software/p/PyWavelets.md @@ -8,11 +8,11 @@ PyWavelets is open source wavelet transform software for Python. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.1`` | ``-Python-3.7.4`` | ``intel/2019b`` -``1.1.1`` | | ``intelcuda/2020b`` -``1.7.0`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``1.1.1`` | ``intelcuda/2020b`` +``1.7.0`` | ``foss/2023a`` +``1.8.0`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyYAML.md b/docs/version-specific/supported-software/p/PyYAML.md index 8e6c0792b8..1266c18adc 100644 --- a/docs/version-specific/supported-software/p/PyYAML.md +++ b/docs/version-specific/supported-software/p/PyYAML.md @@ -6,36 +6,10 @@ search: PyYAML is a YAML parser and emitter for the Python programming language. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``3.11`` | ``-Python-2.7.11`` | ``intel/2016a`` -``3.12`` | ``-Python-2.7.12`` | ``foss/2016b`` -``3.12`` | ``-Python-2.7.14`` | ``foss/2017b`` -``3.12`` | ``-Python-3.6.3`` | ``foss/2017b`` -``3.12`` | ``-Python-2.7.14`` | ``foss/2018a`` -``3.12`` | ``-Python-3.6.4`` | ``foss/2018a`` -``3.12`` | ``-Python-2.7.14`` | ``fosscuda/2017b`` -``3.12`` | ``-Python-3.6.3`` | ``fosscuda/2017b`` -``3.12`` | ``-Python-2.7.12`` | ``intel/2016b`` -``3.12`` | ``-Python-3.5.2`` | ``intel/2016b`` -``3.12`` | ``-Python-2.7.13`` | ``intel/2017a`` -``3.12`` | ``-Python-3.6.1`` | ``intel/2017a`` -``3.12`` | ``-Python-2.7.14`` | ``intel/2017b`` -``3.12`` | ``-Python-3.6.3`` | ``intel/2017b`` -``3.12`` | ``-Python-2.7.14`` | ``intel/2018a`` -``3.12`` | ``-Python-3.6.4`` | ``intel/2018a`` -``3.12`` | | ``system`` -``3.13`` | ``-Python-3.6.6`` | ``foss/2018b`` -``3.13`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` -``3.13`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` -``3.13`` | ``-Python-2.7.15`` | ``intel/2018b`` -``3.13`` | ``-Python-3.6.6`` | ``intel/2018b`` -``3.13`` | | ``system`` -``5.1`` | | ``GCCcore/8.2.0`` -``5.1.2`` | | ``GCCcore/8.3.0`` -``5.3`` | | ``GCCcore/9.3.0`` ``5.3.1`` | | ``GCCcore/10.2.0`` ``5.4.1`` | | ``GCCcore/10.3.0`` ``5.4.1`` | ``-Python-2.7.18`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/p/PyZMQ.md b/docs/version-specific/supported-software/p/PyZMQ.md index e19ea7f1a6..f6572805b8 100644 --- a/docs/version-specific/supported-software/p/PyZMQ.md +++ b/docs/version-specific/supported-software/p/PyZMQ.md @@ -6,32 +6,16 @@ search: Python bindings for ZeroMQ -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``15.2.0`` | ``-Python-2.7.11-zmq4`` | ``foss/2016a`` -``15.2.0`` | ``-Python-2.7.11-zmq4`` | ``intel/2016a`` -``15.2.0`` | ``-Python-3.5.1-zmq4`` | ``intel/2016a`` -``15.3.0`` | ``-Python-2.7.11-zmq4`` | ``foss/2016a`` -``15.3.0`` | ``-Python-3.5.1-zmq4`` | ``foss/2016a`` -``15.4.0`` | ``-Python-2.7.12-zmq4`` | ``intel/2016b`` -``15.4.0`` | ``-Python-3.5.2-zmq4`` | ``intel/2016b`` -``16.0.2`` | ``-Python-2.7.12-zmq4`` | ``foss/2016b`` -``16.0.2`` | ``-Python-3.5.2-zmq4`` | ``foss/2016b`` -``16.0.2`` | ``-Python-2.7.13-zmq4`` | ``foss/2017a`` -``16.0.2`` | ``-Python-2.7.12-zmq4`` | ``intel/2016b`` -``16.0.2`` | ``-Python-3.5.2-zmq4`` | ``intel/2016b`` -``16.0.2`` | ``-Python-2.7.13-zmq4`` | ``intel/2017a`` -``16.0.3`` | ``-Python-2.7.14-zmq4`` | ``intel/2017b`` -``17.0.0`` | ``-Python-2.7.14-zmq4`` | ``foss/2018a`` -``17.0.0`` | ``-Python-3.6.4-zmq4`` | ``foss/2018a`` -``18.1.1`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``22.3.0`` | | ``GCCcore/10.3.0`` -``24.0.1`` | | ``GCCcore/11.3.0`` -``25.1.0`` | | ``GCCcore/12.2.0`` -``25.1.1`` | | ``GCCcore/12.3.0`` -``25.1.2`` | | ``GCCcore/13.2.0`` +version | toolchain +--------|---------- +``22.3.0`` | ``GCCcore/10.3.0`` +``24.0.1`` | ``GCCcore/11.3.0`` +``25.1.0`` | ``GCCcore/12.2.0`` +``25.1.1`` | ``GCCcore/12.3.0`` +``25.1.2`` | ``GCCcore/13.2.0`` +``26.2.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PycURL.md b/docs/version-specific/supported-software/p/PycURL.md index c6c8c33860..7d20a6adee 100644 --- a/docs/version-specific/supported-software/p/PycURL.md +++ b/docs/version-specific/supported-software/p/PycURL.md @@ -8,13 +8,12 @@ PycURL is a Python interface to libcurl. PycURL can be used to fetch objects ide *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``7.43.0.5`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``7.45.2`` | | ``GCCcore/11.3.0`` -``7.45.2`` | | ``GCCcore/12.2.0`` -``7.45.2`` | | ``GCCcore/12.3.0`` -``7.45.3`` | | ``GCCcore/13.2.0`` +version | toolchain +--------|---------- +``7.45.2`` | ``GCCcore/11.3.0`` +``7.45.2`` | ``GCCcore/12.2.0`` +``7.45.2`` | ``GCCcore/12.3.0`` +``7.45.3`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Pychopper.md b/docs/version-specific/supported-software/p/Pychopper.md deleted file mode 100644 index 64b4ac6bc6..0000000000 --- a/docs/version-specific/supported-software/p/Pychopper.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Pychopper - -A tool to identify, orient, trim and rescue full length cDNA reads. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.3.1`` | ``-Python-3.7.4`` | ``intel/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/Pygments.md b/docs/version-specific/supported-software/p/Pygments.md index 9a81f4e21b..d1b9d7fb02 100644 --- a/docs/version-specific/supported-software/p/Pygments.md +++ b/docs/version-specific/supported-software/p/Pygments.md @@ -8,11 +8,9 @@ Generic syntax highlighter suitable for use in code hosting, forums, wikis or ot *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1.3`` | ``-Python-2.7.11`` | ``foss/2016a`` -``2.1.3`` | ``-Python-3.5.1`` | ``foss/2016a`` -``2.18.0`` | | ``GCCcore/12.3.0`` +version | toolchain +--------|---------- +``2.18.0`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Pyke3.md b/docs/version-specific/supported-software/p/Pyke3.md deleted file mode 100644 index a414a34501..0000000000 --- a/docs/version-specific/supported-software/p/Pyke3.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Pyke3 - -Pyke introduces a form of Logic Programming (inspired by Prolog) to the Python community by providing a knowledge-based inference engine (expert system) written in 100% Python. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.1`` | ``-Python-3.6.6`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/Pylint.md b/docs/version-specific/supported-software/p/Pylint.md index 5c4a2104d3..4c9a30886f 100644 --- a/docs/version-specific/supported-software/p/Pylint.md +++ b/docs/version-specific/supported-software/p/Pylint.md @@ -8,16 +8,11 @@ Pylint is a tool that checks for errors in Python code, tries to enforce a codi *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.9.3`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.9.3`` | ``-Python-2.7.15`` | ``intel/2018b`` -``1.9.3`` | ``-Python-2.7.15`` | ``iomkl/2018b`` -``1.9.5`` | ``-Python-2.7.15`` | ``GCCcore/8.2.0`` -``1.9.5`` | ``-Python-2.7.16`` | ``GCCcore/8.3.0`` -``2.17.4`` | | ``GCCcore/12.2.0`` -``2.7.4`` | | ``GCCcore/10.2.0`` -``3.2.5`` | | ``GCCcore/13.2.0`` +version | toolchain +--------|---------- +``2.17.4`` | ``GCCcore/12.2.0`` +``2.7.4`` | ``GCCcore/10.2.0`` +``3.2.5`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Pyomo.md b/docs/version-specific/supported-software/p/Pyomo.md index f4fd3c842f..5cf6c4143e 100644 --- a/docs/version-specific/supported-software/p/Pyomo.md +++ b/docs/version-specific/supported-software/p/Pyomo.md @@ -8,15 +8,13 @@ Pyomo is a Python-based open-source software package that supports a diverse set *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``5.5.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``5.5.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``6.0.1`` | | ``foss/2020b`` -``6.0.1`` | | ``foss/2021a`` -``6.4.2`` | | ``foss/2022a`` -``6.5.0`` | | ``foss/2022b`` -``6.7.3`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``6.0.1`` | ``foss/2020b`` +``6.0.1`` | ``foss/2021a`` +``6.4.2`` | ``foss/2022a`` +``6.5.0`` | ``foss/2022b`` +``6.7.3`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Pyro4.md b/docs/version-specific/supported-software/p/Pyro4.md deleted file mode 100644 index d9f966470d..0000000000 --- a/docs/version-specific/supported-software/p/Pyro4.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Pyro4 - -Pyro means PYthon Remote Objects. It is a library that enables you to build applications in which objects can talk to eachother over the network, with minimal programming effort. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``4.47`` | ``-Python-2.7.11`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/Pysam.md b/docs/version-specific/supported-software/p/Pysam.md index b324cdc3b1..c71a0bbf1f 100644 --- a/docs/version-specific/supported-software/p/Pysam.md +++ b/docs/version-specific/supported-software/p/Pysam.md @@ -4,53 +4,26 @@ search: --- # Pysam -Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix. +Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``0.10.0`` | ``-Python-2.7.12`` | ``foss/2016b`` -``0.10.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.12.0.1`` | ``-Python-2.7.13`` | ``intel/2017a`` -``0.12.0.1`` | ``-Python-2.7.14`` | ``intel/2017b`` -``0.12.0.1`` | ``-Python-3.6.3`` | ``intel/2017b`` -``0.13`` | ``-Python-2.7.14`` | ``intel/2017b`` -``0.13.0`` | ``-Python-3.6.3`` | ``intel/2017b`` -``0.14`` | ``-Python-2.7.14`` | ``foss/2017b`` -``0.14`` | ``-Python-3.6.3`` | ``foss/2017b`` -``0.14`` | ``-Python-2.7.14`` | ``intel/2017b`` -``0.14`` | ``-Python-3.6.3`` | ``intel/2017b`` -``0.14`` | ``-Python-3.6.4`` | ``intel/2018a`` -``0.14.1`` | ``-Python-2.7.14`` | ``foss/2018a`` -``0.14.1`` | ``-Python-3.6.4`` | ``foss/2018a`` -``0.14.1`` | ``-Python-2.7.14`` | ``intel/2018a`` -``0.14.1`` | ``-Python-3.6.4`` | ``intel/2018a`` -``0.15.1`` | ``-Python-2.7.15`` | ``foss/2018b`` -``0.15.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.15.1`` | ``-Python-2.7.15`` | ``intel/2018b`` -``0.15.1`` | ``-Python-3.6.6`` | ``intel/2018b`` -``0.15.2`` | | ``GCC/8.2.0-2.31.1`` -``0.15.2`` | | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``0.15.3`` | | ``GCC/8.3.0`` -``0.15.3`` | | ``iccifort/2019.5.281`` ``0.16.0.1`` | ``-Python-2.7.18`` | ``GCC/10.2.0`` ``0.16.0.1`` | | ``GCC/10.2.0`` ``0.16.0.1`` | | ``GCC/10.3.0`` -``0.16.0.1`` | | ``GCC/8.3.0`` -``0.16.0.1`` | | ``GCC/9.3.0`` -``0.16.0.1`` | | ``iccifort/2020.1.217`` ``0.16.0.1`` | | ``iccifort/2020.4.304`` ``0.17.0`` | ``-Python-2.7.18`` | ``GCC/11.2.0`` ``0.17.0`` | | ``GCC/11.2.0`` ``0.18.0`` | | ``GCC/11.2.0`` ``0.19.1`` | | ``GCC/11.3.0`` ``0.20.0`` | | ``GCC/11.3.0`` +``0.20.0`` | ``-Python-2.7.18`` | ``GCC/12.3.0`` ``0.21.0`` | | ``GCC/12.2.0`` ``0.22.0`` | | ``GCC/12.3.0`` ``0.22.0`` | | ``GCC/13.2.0`` -``0.8.4`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.9.1.4`` | ``-Python-2.7.12`` | ``foss/2016b`` +``0.22.1`` | | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Pysolar.md b/docs/version-specific/supported-software/p/Pysolar.md deleted file mode 100644 index 681c1be212..0000000000 --- a/docs/version-specific/supported-software/p/Pysolar.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Pysolar - -Pysolar is a collection of Python libraries for simulating the irradiation of any point on earth by the sun. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.7`` | ``-Python-3.6.3`` | ``intel/2017b`` -``0.7`` | ``-Python-3.6.4`` | ``intel/2018a`` -``0.8`` | ``-Python-3.7.2`` | ``GCCcore/8.2.0`` -``0.8`` | ``-Python-3.6.6`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/Python-bundle.md b/docs/version-specific/supported-software/p/Python-bundle.md index 5491146c56..084ae68773 100644 --- a/docs/version-specific/supported-software/p/Python-bundle.md +++ b/docs/version-specific/supported-software/p/Python-bundle.md @@ -4,7 +4,7 @@ search: --- # Python-bundle -Python distribution with a number of widely used extensions incl. NumPy, SciPy, Matplotlib, JupyterLab, MPI4PY, ... +Python distribution with a number of widely used extensions incl. NumPy, SciPy, Matplotlib, JupyterLab, MPI4PY, ... *homepage*: diff --git a/docs/version-specific/supported-software/p/Python.md b/docs/version-specific/supported-software/p/Python.md index 508b391276..e8cb2968ad 100644 --- a/docs/version-specific/supported-software/p/Python.md +++ b/docs/version-specific/supported-software/p/Python.md @@ -6,50 +6,10 @@ search: Python is a programming language that lets you work more quickly and integrate your systems more effectively. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2.7.10`` | ``-bare`` | ``GCC/4.9.3-2.25`` -``2.7.10`` | ``-bare`` | ``GNU/4.9.3-2.25`` -``2.7.10`` | | ``gimkl/2.11.5`` -``2.7.11`` | ``-bare`` | ``GCC/4.9.3-2.25`` -``2.7.11`` | | ``foss/2016a`` -``2.7.11`` | | ``gimkl/2.11.5`` -``2.7.11`` | | ``intel/2016.02-GCC-4.9`` -``2.7.11`` | ``-libX11-1.6.3`` | ``intel/2016a`` -``2.7.11`` | | ``intel/2016a`` -``2.7.11`` | | ``iomkl/2016.07`` -``2.7.11`` | | ``iomkl/2016.09-GCC-4.9.3-2.25`` -``2.7.12`` | ``-bare`` | ``GCC/5.4.0-2.26`` -``2.7.12`` | ``-bare`` | ``GCCcore/4.9.3`` -``2.7.12`` | | ``foss/2016b`` -``2.7.12`` | ``-bare`` | ``iccifort/2016.3.210-GCC-5.4.0-2.26`` -``2.7.12`` | | ``intel/2016b`` -``2.7.12`` | | ``iomkl/2017a`` -``2.7.13`` | ``-bare`` | ``GCCcore/6.3.0`` -``2.7.13`` | | ``foss/2017a`` -``2.7.13`` | | ``intel/2017a`` -``2.7.14`` | ``-bare`` | ``GCCcore/6.4.0`` -``2.7.14`` | | ``foss/2017b`` -``2.7.14`` | | ``foss/2018a`` -``2.7.14`` | | ``fosscuda/2017b`` -``2.7.14`` | | ``fosscuda/2018a`` -``2.7.14`` | | ``intel/2017b`` -``2.7.14`` | | ``intel/2018.01`` -``2.7.14`` | | ``intel/2018a`` -``2.7.14`` | | ``intelcuda/2017b`` -``2.7.14`` | | ``iomkl/2018a`` -``2.7.15`` | ``-bare`` | ``GCCcore/7.2.0`` -``2.7.15`` | ``-bare`` | ``GCCcore/7.3.0`` -``2.7.15`` | ``-bare`` | ``GCCcore/8.2.0`` -``2.7.15`` | | ``GCCcore/8.2.0`` -``2.7.15`` | | ``foss/2018b`` -``2.7.15`` | | ``fosscuda/2018b`` -``2.7.15`` | | ``intel/2018b`` -``2.7.15`` | | ``iomkl/2018b`` -``2.7.16`` | ``-bare`` | ``GCCcore/8.3.0`` -``2.7.16`` | | ``GCCcore/8.3.0`` ``2.7.18`` | | ``GCCcore/10.2.0`` ``2.7.18`` | ``-bare`` | ``GCCcore/10.3.0`` ``2.7.18`` | ``-bare`` | ``GCCcore/11.2.0`` @@ -57,10 +17,6 @@ version | versionsuffix | toolchain ``2.7.18`` | ``-bare`` | ``GCCcore/11.3.0`` ``2.7.18`` | ``-bare`` | ``GCCcore/12.2.0`` ``2.7.18`` | | ``GCCcore/12.3.0`` -``2.7.18`` | ``-bare`` | ``GCCcore/9.3.0`` -``2.7.18`` | | ``GCCcore/9.3.0`` -``2.7.9`` | ``-bare`` | ``GCC/4.8.4`` -``2.7.9`` | ``-bare`` | ``GCC/4.9.2`` ``3.10.4`` | ``-bare`` | ``GCCcore/11.3.0`` ``3.10.4`` | | ``GCCcore/11.3.0`` ``3.10.8`` | ``-bare`` | ``GCCcore/12.2.0`` @@ -69,41 +25,7 @@ version | versionsuffix | toolchain ``3.11.3`` | | ``GCCcore/12.3.0`` ``3.11.5`` | | ``GCCcore/13.2.0`` ``3.12.3`` | | ``GCCcore/13.3.0`` -``3.5.1`` | | ``foss/2016a`` -``3.5.1`` | | ``intel/2016a`` -``3.5.2`` | ``-bare`` | ``GCC/5.4.0-2.26`` -``3.5.2`` | | ``foss/2016.04`` -``3.5.2`` | | ``foss/2016b`` -``3.5.2`` | ``-bare`` | ``iccifort/2016.3.210-GCC-5.4.0-2.26`` -``3.5.2`` | | ``intel/2016b`` -``3.6.1`` | | ``foss/2017a`` -``3.6.1`` | | ``intel/2017a`` -``3.6.2`` | | ``foss/2017b`` -``3.6.2`` | | ``intel/2017b`` -``3.6.2`` | | ``intel/2018.00`` -``3.6.3`` | | ``foss/2017b`` -``3.6.3`` | | ``fosscuda/2017b`` -``3.6.3`` | | ``intel/2017b`` -``3.6.3`` | | ``intel/2018.01`` -``3.6.3`` | | ``intelcuda/2017b`` -``3.6.4`` | | ``foss/2017a`` -``3.6.4`` | | ``foss/2018a`` -``3.6.4`` | | ``fosscuda/2018a`` -``3.6.4`` | | ``golf/2018a`` -``3.6.4`` | | ``iimkl/2018a`` -``3.6.4`` | | ``intel/2018a`` -``3.6.4`` | | ``iomkl/2018.02`` -``3.6.4`` | | ``iomkl/2018a`` -``3.6.6`` | | ``foss/2018b`` -``3.6.6`` | | ``fosscuda/2018b`` -``3.6.6`` | | ``intel/2018b`` -``3.6.6`` | | ``iomkl/2018b`` -``3.7.0`` | | ``foss/2018b`` -``3.7.0`` | | ``intel/2018b`` -``3.7.0`` | | ``iomkl/2018b`` -``3.7.2`` | | ``GCCcore/8.2.0`` -``3.7.4`` | | ``GCCcore/8.3.0`` -``3.8.2`` | | ``GCCcore/9.3.0`` +``3.13.1`` | | ``GCCcore/14.2.0`` ``3.8.6`` | | ``GCCcore/10.2.0`` ``3.9.5`` | ``-bare`` | ``GCCcore/10.3.0`` ``3.9.5`` | | ``GCCcore/10.3.0`` diff --git a/docs/version-specific/supported-software/p/index.md b/docs/version-specific/supported-software/p/index.md index 61a00137f9..355c13ca0f 100644 --- a/docs/version-specific/supported-software/p/index.md +++ b/docs/version-specific/supported-software/p/index.md @@ -9,28 +9,26 @@ search: * [p11-kit](p11-kit.md) - * [p4-phylogenetics](p4-phylogenetics.md) * [p4est](p4est.md) - * [p4vasp](p4vasp.md) * [p7zip](p7zip.md) * [packmol](packmol.md) * [PAGAN2](PAGAN2.md) * [pagmo](pagmo.md) * [pairsnp](pairsnp.md) + * [pairtools](pairtools.md) * [PAL2NAL](PAL2NAL.md) * [paladin](paladin.md) * [PALEOMIX](PALEOMIX.md) + * [PALM](PALM.md) * [PAML](PAML.md) * [panaroo](panaroo.md) * [pandapower](pandapower.md) - * [pandas](pandas.md) - * [pandas-datareader](pandas-datareader.md) - * [PANDAseq](PANDAseq.md) * [Pandoc](Pandoc.md) * [Panedr](Panedr.md) * [Pango](Pango.md) * [pangolin](pangolin.md) * [panito](panito.md) + * [Panoply](Panoply.md) * [PAPI](PAPI.md) * [parallel](parallel.md) * [parallel-fastq-dump](parallel-fastq-dump.md) @@ -43,36 +41,28 @@ search: * [ParaView](ParaView.md) * [Parcels](Parcels.md) * [PARI-GP](PARI-GP.md) - * [ParmEd](ParmEd.md) * [ParMETIS](ParMETIS.md) * [ParMGridGen](ParMGridGen.md) * [Parsl](Parsl.md) + * [Parsnp](Parsnp.md) * [PartitionFinder](PartitionFinder.md) * [PASA](PASA.md) - * [pasta](pasta.md) * [PaStiX](PaStiX.md) * [pastml](pastml.md) * [patch](patch.md) * [patchelf](patchelf.md) - * [path.py](path.py.md) + * [pathos](pathos.md) * [PAUP](PAUP.md) * [pauvre](pauvre.md) - * [pbbam](pbbam.md) - * [pbcopper](pbcopper.md) - * [pbdagcon](pbdagcon.md) * [pbipa](pbipa.md) * [pblat](pblat.md) - * [pbmm2](pbmm2.md) - * [pbs_python](pbs_python.md) - * [PBSuite](PBSuite.md) * [PBZIP2](PBZIP2.md) * [PCAngsd](PCAngsd.md) - * [PCC](PCC.md) * [PCL](PCL.md) * [PCMSolver](PCMSolver.md) - * [PCRaster](PCRaster.md) * [PCRE](PCRE.md) * [PCRE2](PCRE2.md) + * [PDAL](PDAL.md) * [pdf2docx](pdf2docx.md) * [PDM](PDM.md) * [pdsh](pdsh.md) @@ -80,15 +70,11 @@ search: * [peakdetect](peakdetect.md) * [PEAR](PEAR.md) * [PEcAn](PEcAn.md) - * [PennCNV](PennCNV.md) + * [PennyLane](PennyLane.md) * [PEPT](PEPT.md) - * [Percolator](Percolator.md) * [Perl](Perl.md) - * [perl-app-cpanminus](perl-app-cpanminus.md) * [Perl-bundle-CPAN](Perl-bundle-CPAN.md) - * [Perl4-CoreLibs](Perl4-CoreLibs.md) * [Perseus](Perseus.md) - * [PEST++](PEST++.md) * [PETSc](PETSc.md) * [petsc4py](petsc4py.md) * [PfamScan](PfamScan.md) @@ -96,29 +82,20 @@ search: * [pfind](pfind.md) * [pftoolsV3](pftoolsV3.md) * [pFUnit](pFUnit.md) - * [PGDSpider](PGDSpider.md) - * [PGI](PGI.md) * [PGPLOT](PGPLOT.md) - * [PHANOTATE](PHANOTATE.md) * [Phantompeakqualtools](Phantompeakqualtools.md) - * [PHASE](PHASE.md) * [phasius](phasius.md) - * [PHAST](PHAST.md) * [Phenoflow](Phenoflow.md) - * [PheWAS](PheWAS.md) - * [PheWeb](PheWeb.md) * [Philosopher](Philosopher.md) * [PhiPack](PhiPack.md) - * [PHLAT](PHLAT.md) * [phonemizer](phonemizer.md) * [phono3py](phono3py.md) * [phonopy](phonopy.md) + * [Phonopy-Spectroscopy](Phonopy-Spectroscopy.md) * [photontorch](photontorch.md) * [phototonic](phototonic.md) * [PHYLIP](PHYLIP.md) - * [PhyloBayes-MPI](PhyloBayes-MPI.md) - * [phylokit](phylokit.md) - * [phylonaut](phylonaut.md) + * [phylo-treetime](phylo-treetime.md) * [PhyloPhlAn](PhyloPhlAn.md) * [phyluce](phyluce.md) * [PhyML](PhyML.md) @@ -127,50 +104,29 @@ search: * [PICI-LIGGGHTS](PICI-LIGGGHTS.md) * [PICRUSt2](PICRUSt2.md) * [pigz](pigz.md) - * [PIL](PIL.md) - * [PileOMeth](PileOMeth.md) * [Pillow](Pillow.md) * [Pillow-SIMD](Pillow-SIMD.md) * [Pilon](Pilon.md) - * [PIMS](PIMS.md) * [Pindel](Pindel.md) - * [Pingouin](Pingouin.md) * [Pint](Pint.md) - * [pip](pip.md) * [PIPITS](PIPITS.md) * [PIRATE](PIRATE.md) - * [pIRS](pIRS.md) - * [Pisces](Pisces.md) - * [piSvM](piSvM.md) - * [piSvM-JSC](piSvM-JSC.md) * [pixman](pixman.md) - * [pizzly](pizzly.md) * [pkg-config](pkg-config.md) * [pkgconf](pkgconf.md) * [pkgconfig](pkgconfig.md) * [PLAMS](PLAMS.md) * [planarity](planarity.md) - * [plantcv](plantcv.md) * [plantri](plantri.md) - * [PlaScope](PlaScope.md) - * [PlasmaPy](PlasmaPy.md) - * [PLAST](PLAST.md) - * [Platanus](Platanus.md) - * [Platypus](Platypus.md) * [Platypus-Opt](Platypus-Opt.md) * [plc](plc.md) * [PLINK](PLINK.md) * [plinkliftover](plinkliftover.md) - * [plinkQC](plinkQC.md) - * [PLINKSEQ](PLINKSEQ.md) * [plmc](plmc.md) * [plot1cell](plot1cell.md) - * [Ploticus](Ploticus.md) - * [plotly](plotly.md) * [plotly-orca](plotly-orca.md) * [plotly.py](plotly.py.md) * [plotutils](plotutils.md) - * [PLplot](PLplot.md) * [PLUMED](PLUMED.md) * [PLY](PLY.md) * [PMIx](PMIx.md) @@ -182,31 +138,25 @@ search: * [poetry](poetry.md) * [polars](polars.md) * [polymake](polymake.md) - * [pomkl](pomkl.md) - * [pompi](pompi.md) + * [PoPoolation-TE2](PoPoolation-TE2.md) * [poppler](poppler.md) * [poppunk](poppunk.md) * [popscle](popscle.md) * [popt](popt.md) * [Porechop](Porechop.md) - * [porefoam](porefoam.md) - * [poretools](poretools.md) * [PortAudio](PortAudio.md) - * [Portcullis](Portcullis.md) * [PortMidi](PortMidi.md) - * [Postgres-XL](Postgres-XL.md) * [PostgreSQL](PostgreSQL.md) * [POT](POT.md) * [POV-Ray](POV-Ray.md) * [powerlaw](powerlaw.md) * [pp-sketchlib](pp-sketchlib.md) * [PPanGGOLiN](PPanGGOLiN.md) - * [PPfold](PPfold.md) * [ppl](ppl.md) * [pplacer](pplacer.md) * [pplpy](pplpy.md) * [PRANK](PRANK.md) - * [PRC](PRC.md) + * [pre-commit](pre-commit.md) * [preCICE](preCICE.md) * [premailer](premailer.md) * [PREQUAL](PREQUAL.md) @@ -216,63 +166,43 @@ search: * [pretty-yaml](pretty-yaml.md) * [primecount](primecount.md) * [primecountpy](primecountpy.md) - * [Primer3](Primer3.md) * [PRINSEQ](PRINSEQ.md) - * [printproto](printproto.md) * [PRISMS-PF](PRISMS-PF.md) - * [ProbABEL](ProbABEL.md) * [ProBiS](ProBiS.md) * [prodigal](prodigal.md) * [ProFit](ProFit.md) * [PROJ](PROJ.md) - * [ProjectQ](ProjectQ.md) * [prokka](prokka.md) * [prompt-toolkit](prompt-toolkit.md) - * [proovread](proovread.md) - * [propy](propy.md) * [ProteinMPNN](ProteinMPNN.md) * [Proteinortho](Proteinortho.md) - * [ProtHint](ProtHint.md) * [protobuf](protobuf.md) * [protobuf-python](protobuf-python.md) - * [protozero](protozero.md) * [PRRTE](PRRTE.md) * [PRSice](PRSice.md) * [PSASS](PSASS.md) - * [pscom](pscom.md) - * [PSI](PSI.md) * [PSI4](PSI4.md) * [PsiCLASS](PsiCLASS.md) * [PSIPRED](PSIPRED.md) * [PSM2](PSM2.md) * [psmc](psmc.md) - * [psmpi](psmpi.md) - * [psmpi2](psmpi2.md) * [PSolver](PSolver.md) - * [PSORTb](PSORTb.md) - * [psrecord](psrecord.md) * [pstoedit](pstoedit.md) * [psutil](psutil.md) * [psycopg](psycopg.md) * [psycopg2](psycopg2.md) - * [ptemcee](ptemcee.md) - * [PTESFinder](PTESFinder.md) - * [pubtcrs](pubtcrs.md) * [pugixml](pugixml.md) * [pullseq](pullseq.md) * [PuLP](PuLP.md) * [purge_dups](purge_dups.md) * [pv](pv.md) - * [py](py.md) * [py-aiger](py-aiger.md) - * [py-aiger-bdd](py-aiger-bdd.md) * [py-c3d](py-c3d.md) * [py-cpuinfo](py-cpuinfo.md) * [py3Dmol](py3Dmol.md) - * [pyABC](pyABC.md) * [PyAEDT](PyAEDT.md) * [PyAMG](PyAMG.md) - * [PyAPS3](PyAPS3.md) + * [pyannote.audio](pyannote.audio.md) * [PyAV](PyAV.md) * [pybedtools](pybedtools.md) * [PyBEL](PyBEL.md) @@ -280,6 +210,7 @@ search: * [pyBigWig](pyBigWig.md) * [pybind11](pybind11.md) * [pybind11-stubgen](pybind11-stubgen.md) + * [pybind11_abseil](pybind11_abseil.md) * [pybinding](pybinding.md) * [PyBioLib](PyBioLib.md) * [PyBullet](PyBullet.md) @@ -288,72 +219,48 @@ search: * [pyccel](pyccel.md) * [PyCharm](PyCharm.md) * [PyCheMPS2](PyCheMPS2.md) - * [Pychopper](Pychopper.md) - * [PyCifRW](PyCifRW.md) * [PyClone](PyClone.md) - * [pycma](pycma.md) * [pycocotools](pycocotools.md) * [pycodestyle](pycodestyle.md) - * [PyCogent](PyCogent.md) * [pycoQC](pycoQC.md) * [pycubescd](pycubescd.md) * [PyCUDA](PyCUDA.md) * [PycURL](PycURL.md) * [PyDamage](PyDamage.md) * [pydantic](pydantic.md) - * [PyDatastream](PyDatastream.md) * [pydicom](pydicom.md) * [pydicom-seg](pydicom-seg.md) - * [pydlpoly](pydlpoly.md) * [pydot](pydot.md) * [pyEGA3](pyEGA3.md) - * [pyenchant](pyenchant.md) * [PyEVTK](PyEVTK.md) * [PyEXR](PyEXR.md) * [pyFAI](pyFAI.md) * [pyfaidx](pyfaidx.md) * [pyfasta](pyfasta.md) - * [PyFFmpeg](PyFFmpeg.md) * [pyFFTW](pyFFTW.md) - * [pyfits](pyfits.md) - * [PyFMI](PyFMI.md) * [PyFoam](PyFoam.md) - * [PyFR](PyFR.md) * [PyFrag](PyFrag.md) * [pyGAM](pyGAM.md) * [pygame](pygame.md) - * [pygccxml](pygccxml.md) * [pyGenomeTracks](pyGenomeTracks.md) * [PyGEOS](PyGEOS.md) - * [pyGIMLi](pyGIMLi.md) * [Pygments](Pygments.md) * [pygmo](pygmo.md) * [PyGObject](PyGObject.md) * [pygraphviz](pygraphviz.md) - * [pygrib](pygrib.md) - * [PyGTK](PyGTK.md) - * [PyGTS](PyGTS.md) - * [PyGWAS](PyGWAS.md) - * [pyhdf](pyhdf.md) * [PyHMMER](PyHMMER.md) * [PyImageJ](PyImageJ.md) * [PyInstaller](PyInstaller.md) * [pyiron](pyiron.md) - * [Pyke3](Pyke3.md) - * [pylift](pylift.md) * [Pylint](Pylint.md) * [pylipid](pylipid.md) * [pyMannKendall](pyMannKendall.md) * [pymatgen](pymatgen.md) - * [pymatgen-db](pymatgen-db.md) - * [pymbar](pymbar.md) * [pyMBE](pyMBE.md) * [PyMC](PyMC.md) * [PyMC3](PyMC3.md) * [pymca](pymca.md) - * [pymemcache](pymemcache.md) * [PyMOL](PyMOL.md) - * [PyNAST](PyNAST.md) * [pyobjcryst](pyobjcryst.md) * [PyOD](PyOD.md) * [pyodbc](pyodbc.md) @@ -362,29 +269,23 @@ search: * [PyOpenGL](PyOpenGL.md) * [pyparsing](pyparsing.md) * [pyperf](pyperf.md) - * [pyplusplus](pyplusplus.md) * [pypmt](pypmt.md) * [PYPOWER](PYPOWER.md) * [pyproj](pyproj.md) * [PyPSA](PyPSA.md) * [PyPy](PyPy.md) * [pyqstem](pyqstem.md) - * [PyQt](PyQt.md) * [PyQt-builder](PyQt-builder.md) * [PyQt5](PyQt5.md) * [PyQtGraph](PyQtGraph.md) * [pyradiomics](pyradiomics.md) - * [PyRe](PyRe.md) * [PyRETIS](PyRETIS.md) - * [pyringe](pyringe.md) * [pyro-api](pyro-api.md) * [pyro-ppl](pyro-ppl.md) - * [Pyro4](Pyro4.md) * [PyRosetta](PyRosetta.md) * [Pysam](Pysam.md) * [pysamstats](pysamstats.md) * [PySAT](PySAT.md) - * [pyScaf](pyScaf.md) * [pySCENIC](pySCENIC.md) * [PySCF](PySCF.md) * [pyseer](pyseer.md) @@ -393,14 +294,10 @@ search: * [PySide2](PySide2.md) * [PySINDy](PySINDy.md) * [pyslim](pyslim.md) - * [pysndfx](pysndfx.md) - * [Pysolar](Pysolar.md) * [pyspoa](pyspoa.md) - * [pysqlite](pysqlite.md) * [PyStan](PyStan.md) * [pystencils](pystencils.md) * [pysteps](pysteps.md) - * [pystran](pystran.md) * [PyTables](PyTables.md) * [PyTensor](PyTensor.md) * [pytesseract](pytesseract.md) @@ -421,19 +318,19 @@ search: * [python-casacore](python-casacore.md) * [python-docx](python-docx.md) * [python-elf](python-elf.md) - * [python-hl7](python-hl7.md) * [python-igraph](python-igraph.md) * [python-irodsclient](python-irodsclient.md) * [python-isal](python-isal.md) * [python-Levenshtein](python-Levenshtein.md) * [python-libsbml](python-libsbml.md) * [python-louvain](python-louvain.md) + * [python-lsp-server](python-lsp-server.md) * [python-mujoco](python-mujoco.md) * [python-parasail](python-parasail.md) + * [python-slugify](python-slugify.md) * [python-telegram-bot](python-telegram-bot.md) - * [python-weka-wrapper3](python-weka-wrapper3.md) * [python-xxhash](python-xxhash.md) - * [pythran](pythran.md) + * [python-zlib-ng](python-zlib-ng.md) * [PyTorch](PyTorch.md) * [pytorch-3dunet](pytorch-3dunet.md) * [PyTorch-bundle](PyTorch-bundle.md) @@ -444,8 +341,8 @@ search: * [PyTorch-Lightning](PyTorch-Lightning.md) * [PyTorch3D](PyTorch3D.md) * [PyTorchVideo](PyTorchVideo.md) - * [PyVCF](PyVCF.md) * [PyVCF3](PyVCF3.md) + * [pyvips](pyvips.md) * [PyVista](PyVista.md) * [pyWannier90](pyWannier90.md) * [PyWavelets](PyWavelets.md) diff --git a/docs/version-specific/supported-software/p/p11-kit.md b/docs/version-specific/supported-software/p/p11-kit.md index 3d333d9dd2..6d8663ef5f 100644 --- a/docs/version-specific/supported-software/p/p11-kit.md +++ b/docs/version-specific/supported-software/p/p11-kit.md @@ -6,14 +6,10 @@ search: Provides a way to load and enumerate PKCS#11 modules. Provides a standard configuration setup for installing PKCS#11 modules in such a way that they're discoverable. Also solves problems with coordinating the use of PKCS#11 by different components or libraries living in the same process. -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.23.2`` | ``GCCcore/5.4.0`` -``0.23.2`` | ``GNU/4.9.3-2.25`` -``0.23.2`` | ``foss/2016a`` -``0.23.2`` | ``intel/2016a`` ``0.24.0`` | ``GCCcore/10.3.0`` ``0.24.1`` | ``GCCcore/11.2.0`` ``0.24.1`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/p/p4-phylogenetics.md b/docs/version-specific/supported-software/p/p4-phylogenetics.md deleted file mode 100644 index e447253d77..0000000000 --- a/docs/version-specific/supported-software/p/p4-phylogenetics.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# p4-phylogenetics - -A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.4-20210322`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/p4est.md b/docs/version-specific/supported-software/p/p4est.md index ba92d0919f..5c57f06452 100644 --- a/docs/version-specific/supported-software/p/p4est.md +++ b/docs/version-specific/supported-software/p/p4est.md @@ -10,8 +10,6 @@ p4est is a C library to manage a collection (a forest) of multiple connected ada version | toolchain --------|---------- -``2.2`` | ``foss/2019a`` -``2.2`` | ``intel/2019a`` ``2.8`` | ``foss/2021a`` ``2.8.6`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/p/p4vasp.md b/docs/version-specific/supported-software/p/p4vasp.md deleted file mode 100644 index 01999ee022..0000000000 --- a/docs/version-specific/supported-software/p/p4vasp.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# p4vasp - -Visualization suite for VASP - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.3.29`` | ``-Python-2.7.11`` | ``intel/2016a`` -``0.3.30`` | ``-Python-2.7.15`` | ``foss/2018b`` -``0.3.30`` | ``-Python-2.7.14`` | ``intel/2017b`` -``0.3.30`` | ``-Python-2.7.14`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/p7zip.md b/docs/version-specific/supported-software/p/p7zip.md index 5ebc24c6ba..bc6e0bbc13 100644 --- a/docs/version-specific/supported-software/p/p7zip.md +++ b/docs/version-specific/supported-software/p/p7zip.md @@ -4,22 +4,18 @@ search: --- # p7zip -p7zip is a quick port of 7z.exe and 7za.exe (command line version of 7zip) for Unix. 7-Zip is a file archiver with highest compression ratio. +p7zip is a quick port of 7z.exe and 7za.exe (CLI version of 7zip) for Unix. 7-Zip is a file archiver with highest compression ratio. -*homepage*: +*homepage*: version | toolchain --------|---------- -``16.02`` | ``GCC/6.4.0-2.28`` -``16.02`` | ``iccifort/2017.4.196-GCC-6.4.0-2.28`` -``16.02`` | ``intel/2018a`` ``17.03`` | ``GCCcore/10.2.0`` ``17.04`` | ``GCCcore/10.3.0`` ``17.04`` | ``GCCcore/11.2.0`` ``17.04`` | ``GCCcore/11.3.0`` ``17.04`` | ``GCCcore/12.3.0`` -``9.38.1`` | ``GCC/4.9.2`` -``9.38.1`` | ``system`` +``17.05`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pFUnit.md b/docs/version-specific/supported-software/p/pFUnit.md index 3d6cfc3dcb..279a113629 100644 --- a/docs/version-specific/supported-software/p/pFUnit.md +++ b/docs/version-specific/supported-software/p/pFUnit.md @@ -6,11 +6,10 @@ search: pFUnit is a unit testing framework enabling JUnit-like testing of serial and MPI-parallel software written in Fortran. -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.2.9`` | ``gompi/2018b`` ``4.2.0`` | ``gompi/2020b`` ``4.2.0`` | ``iimpi/2021a`` ``4.7.3`` | ``gompi/2022a`` diff --git a/docs/version-specific/supported-software/p/pIRS.md b/docs/version-specific/supported-software/p/pIRS.md deleted file mode 100644 index d7ca66bddb..0000000000 --- a/docs/version-specific/supported-software/p/pIRS.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pIRS - -pIRS (profile based Illumina pair-end Reads Simulator) is a program for simulating paired-end reads from a reference genome. It is optimized for simulating reads similar to those generated from the Illumina platform. - -*homepage*: - -version | toolchain ---------|---------- -``2.0.2`` | ``gompi/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/packmol.md b/docs/version-specific/supported-software/p/packmol.md index 323811ae0d..81a48ed506 100644 --- a/docs/version-specific/supported-software/p/packmol.md +++ b/docs/version-specific/supported-software/p/packmol.md @@ -6,16 +6,12 @@ search: Packing Optimization for Molecular Dynamics Simulations -*homepage*: +*homepage*: version | toolchain --------|---------- -``16.103`` | ``intel/2016a`` -``18.013`` | ``foss/2018a`` -``18.013`` | ``intel/2018a`` ``20.14.4`` | ``GCC/12.3.0`` ``20.2.2`` | ``GCC/10.2.0`` -``v20.2.2`` | ``iccifort/2020.1.217`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pairtools.md b/docs/version-specific/supported-software/p/pairtools.md new file mode 100644 index 0000000000..dfcf387594 --- /dev/null +++ b/docs/version-specific/supported-software/p/pairtools.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# pairtools + +pairtools is a simple and fast command-line framework to process sequencing data from a Hi-C experiment. pairtools perform various operations on Hi-C pairs and occupy the middle position in a typical Hi-C data processing pipeline. + +*homepage*: + +version | toolchain +--------|---------- +``1.1.2`` | ``gfbf/2024a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/pandas-datareader.md b/docs/version-specific/supported-software/p/pandas-datareader.md deleted file mode 100644 index 46e70da9a2..0000000000 --- a/docs/version-specific/supported-software/p/pandas-datareader.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pandas-datareader - -Up to date remote data access for pandas, works for multiple versions of pandas. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.7.0`` | ``-Python-3.6.4`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pandas.md b/docs/version-specific/supported-software/p/pandas.md deleted file mode 100644 index c22c26013e..0000000000 --- a/docs/version-specific/supported-software/p/pandas.md +++ /dev/null @@ -1,32 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pandas - -pandas is an open source, BSD-licensed library providing high-performance, easy-to-use data structures and data analysis tools for the Python programming language. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.18.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``0.18.0`` | ``-Python-3.5.1`` | ``foss/2016a`` -``0.18.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``0.18.0`` | ``-Python-3.5.1`` | ``intel/2016a`` -``0.18.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.18.1`` | ``-Python-3.5.2`` | ``intel/2016b`` -``0.19.0`` | ``-Python-2.7.12`` | ``foss/2016b`` -``0.19.0`` | ``-Python-3.5.2`` | ``foss/2016b`` -``0.19.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.19.0`` | ``-Python-3.5.2`` | ``intel/2016b`` -``0.19.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.19.1`` | ``-Python-3.5.2`` | ``intel/2016b`` -``0.20.1`` | ``-Python-3.6.1`` | ``intel/2017a`` -``0.21.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``0.21.0`` | ``-Python-3.6.3`` | ``intel/2017b`` -``1.1.2`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/parallel-fastq-dump.md b/docs/version-specific/supported-software/p/parallel-fastq-dump.md index 7bdf89be82..d16948745d 100644 --- a/docs/version-specific/supported-software/p/parallel-fastq-dump.md +++ b/docs/version-specific/supported-software/p/parallel-fastq-dump.md @@ -8,12 +8,11 @@ parallel fastq-dump wrapper *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.6.5`` | ``-Python-3.7.2`` | ``GCCcore/8.2.0`` -``0.6.6`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` -``0.6.7`` | | ``gompi/2020b`` -``0.6.7`` | | ``gompi/2022a`` +version | toolchain +--------|---------- +``0.6.7`` | ``gompi/2020b`` +``0.6.7`` | ``gompi/2022a`` +``0.6.7`` | ``gompi/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/parallel.md b/docs/version-specific/supported-software/p/parallel.md index d737ae113c..145c7f1c6a 100644 --- a/docs/version-specific/supported-software/p/parallel.md +++ b/docs/version-specific/supported-software/p/parallel.md @@ -6,26 +6,10 @@ search: parallel: Build and execute shell commands in parallel -*homepage*: +*homepage*: version | toolchain --------|---------- -``20141122`` | ``GCC/4.9.2`` -``20150322`` | ``GCC/4.9.2`` -``20150822`` | ``GCC/4.9.2`` -``20160622`` | ``foss/2016a`` -``20170822`` | ``intel/2017a`` -``20171022`` | ``intel/2017b`` -``20171122`` | ``foss/2017b`` -``20171122`` | ``intel/2017b`` -``20180422`` | ``intel/2018a`` -``20180822`` | ``foss/2018b`` -``20181222`` | ``intel/2018b`` -``20190222`` | ``GCCcore/7.3.0`` -``20190622`` | ``GCCcore/8.2.0`` -``20190922`` | ``GCCcore/8.3.0`` -``20200422`` | ``GCCcore/9.3.0`` -``20200522`` | ``GCCcore/9.3.0`` ``20210322`` | ``GCCcore/10.2.0`` ``20210622`` | ``GCCcore/10.3.0`` ``20210722`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/p/paramiko.md b/docs/version-specific/supported-software/p/paramiko.md index 67eb78a469..a0f444c09c 100644 --- a/docs/version-specific/supported-software/p/paramiko.md +++ b/docs/version-specific/supported-software/p/paramiko.md @@ -11,6 +11,7 @@ Paramiko is a pure-Python (3.6+) implementation of the SSHv2 protocol, providing version | toolchain --------|---------- ``3.2.0`` | ``GCCcore/12.3.0`` +``3.5.1`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/parasail.md b/docs/version-specific/supported-software/p/parasail.md index 11372997f1..d9e83cd125 100644 --- a/docs/version-specific/supported-software/p/parasail.md +++ b/docs/version-specific/supported-software/p/parasail.md @@ -4,18 +4,12 @@ search: --- # parasail -parasail is a SIMD C (C99) library containing implementations of the Smith-Waterman (local), Needleman-Wunsch (global), and semi-global pairwise sequence alignment algorithms. +parasail is a SIMD C (C99) library containing implementations of the Smith-Waterman (local), Needleman-Wunsch (global), and semi-global pairwise sequence alignment algorithms. *homepage*: version | toolchain --------|---------- -``2.2`` | ``intel/2018a`` -``2.4`` | ``foss/2018b`` -``2.4.1`` | ``GCC/8.3.0`` -``2.4.1`` | ``intel/2019b`` -``2.4.2`` | ``GCC/9.3.0`` -``2.4.2`` | ``iccifort/2020.1.217`` ``2.4.3`` | ``GCC/10.2.0`` ``2.4.3`` | ``GCC/10.3.0`` ``2.5`` | ``GCC/11.2.0`` diff --git a/docs/version-specific/supported-software/p/pasta.md b/docs/version-specific/supported-software/p/pasta.md deleted file mode 100644 index 740a3af21c..0000000000 --- a/docs/version-specific/supported-software/p/pasta.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pasta - -PASTA (Practical Alignment using SATe and Transitivity) - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.8.5`` | ``-Python-3.7.2`` | ``GCC/8.2.0-2.31.1`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/patchelf.md b/docs/version-specific/supported-software/p/patchelf.md index 1556954098..9e1d2f9740 100644 --- a/docs/version-specific/supported-software/p/patchelf.md +++ b/docs/version-specific/supported-software/p/patchelf.md @@ -6,24 +6,19 @@ search: PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables. -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.10`` | ``GCCcore/7.2.0`` -``0.10`` | ``GCCcore/8.3.0`` ``0.12`` | ``GCCcore/10.2.0`` ``0.12`` | ``GCCcore/10.3.0`` -``0.12`` | ``GCCcore/9.3.0`` ``0.13`` | ``GCCcore/11.2.0`` ``0.15.0`` | ``GCCcore/11.3.0`` ``0.17.2`` | ``GCCcore/12.2.0`` ``0.18.0`` | ``GCCcore/12.3.0`` ``0.18.0`` | ``GCCcore/13.2.0`` ``0.18.0`` | ``GCCcore/13.3.0`` -``0.8`` | ``GNU/4.9.3-2.25`` -``0.9`` | ``GCCcore/6.4.0`` -``0.9`` | ``foss/2016a`` +``0.18.0`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/path.py.md b/docs/version-specific/supported-software/p/path.py.md deleted file mode 100644 index 59d554acce..0000000000 --- a/docs/version-specific/supported-software/p/path.py.md +++ /dev/null @@ -1,22 +0,0 @@ ---- -search: - boost: 0.5 ---- -# path.py - -path.py is a Python library implementing path objects as first-class entities, allowing common operations on files to be invoked on those path objects directly. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``10.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``8.2.1`` | ``-Python-2.7.11`` | ``foss/2016a`` -``8.2.1`` | ``-Python-3.5.1`` | ``foss/2016a`` -``8.2.1`` | ``-Python-2.7.12`` | ``foss/2016b`` -``8.2.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``8.2.1`` | ``-Python-3.5.2`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/Bpipe.md b/docs/version-specific/supported-software/p/pathos.md similarity index 82% rename from docs/version-specific/supported-software/b/Bpipe.md rename to docs/version-specific/supported-software/p/pathos.md index 1d082aa70f..3f0a134c8b 100644 --- a/docs/version-specific/supported-software/b/Bpipe.md +++ b/docs/version-specific/supported-software/p/pathos.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# Bpipe +# pathos -Bpipe - a tool for running and managing bioinformatics pipelines +parallel graph management and execution in heterogeneous computing -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.9.9.2`` | ``intel/2017a`` +``0.3.3`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pauvre.md b/docs/version-specific/supported-software/p/pauvre.md index 84c28e36e4..66dc9dc5f2 100644 --- a/docs/version-specific/supported-software/p/pauvre.md +++ b/docs/version-specific/supported-software/p/pauvre.md @@ -8,14 +8,13 @@ Tools for plotting Oxford Nanopore and other long-read data *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1923`` | ``-Python-3.7.4`` | ``intel/2019b`` -``0.1924`` | | ``intel/2020b`` -``0.2.3`` | | ``foss/2021a`` -``0.2.3`` | | ``foss/2022a`` -``0.2.3`` | | ``foss/2022b`` -``0.2.3`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``0.1924`` | ``intel/2020b`` +``0.2.3`` | ``foss/2021a`` +``0.2.3`` | ``foss/2022a`` +``0.2.3`` | ``foss/2022b`` +``0.2.3`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pbbam.md b/docs/version-specific/supported-software/p/pbbam.md deleted file mode 100644 index bb7be94b4f..0000000000 --- a/docs/version-specific/supported-software/p/pbbam.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pbbam - -The pbbam software package provides components to create, query, & edit PacBio BAM files and associated indices. - -*homepage*: - -version | toolchain ---------|---------- -``1.0.6`` | ``gompi/2019a`` -``20170508`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pbcopper.md b/docs/version-specific/supported-software/p/pbcopper.md deleted file mode 100644 index 132ad237ba..0000000000 --- a/docs/version-specific/supported-software/p/pbcopper.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pbcopper - -The pbcopper library provides a suite of data structures, algorithms, and utilities for C++ applications. - -*homepage*: - -version | toolchain ---------|---------- -``1.3.0`` | ``gompi/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pbdagcon.md b/docs/version-specific/supported-software/p/pbdagcon.md deleted file mode 100644 index b89a9744e2..0000000000 --- a/docs/version-specific/supported-software/p/pbdagcon.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pbdagcon - -pbdagcon is a tool that implements DAGCon (Directed Acyclic Graph Consensus) which is a sequence consensus algorithm based on using directed acyclic graphs to encode multiple sequence alignment. - -*homepage*: - -version | toolchain ---------|---------- -``20170330`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pblat.md b/docs/version-specific/supported-software/p/pblat.md index 47e8e8ea4f..4b834d9358 100644 --- a/docs/version-specific/supported-software/p/pblat.md +++ b/docs/version-specific/supported-software/p/pblat.md @@ -11,6 +11,7 @@ When the query file format is fasta, you can specify many threads to process it. version | toolchain --------|---------- ``2.5.1`` | ``foss/2022b`` +``2.5.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pbmm2.md b/docs/version-specific/supported-software/p/pbmm2.md deleted file mode 100644 index 380790d03d..0000000000 --- a/docs/version-specific/supported-software/p/pbmm2.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pbmm2 - -A minimap2 frontend for PacBio native data formats - -*homepage*: - -version | toolchain ---------|---------- -``1.1.0`` | ``gompi/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pbs_python.md b/docs/version-specific/supported-software/p/pbs_python.md deleted file mode 100644 index 7627e4d2c2..0000000000 --- a/docs/version-specific/supported-software/p/pbs_python.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pbs_python - -The pbs_python package is a wrapper class for the Torque C library. With this package you now can write utilities/extensions in Python instead of C. We developed this package because we want to replace xpbsmon by an ascii version named pbsmon. PBSQuery is also included in this package. This is a python module build on top of the pbs python module to simplify querying the batch server, eg: how many jobs, how many nodes, ... - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``4.6.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``4.6.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``4.6.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``4.6.0`` | | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/perl-app-cpanminus.md b/docs/version-specific/supported-software/p/perl-app-cpanminus.md deleted file mode 100644 index 4b13a3bebd..0000000000 --- a/docs/version-specific/supported-software/p/perl-app-cpanminus.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# perl-app-cpanminus - -cpanm - get, unpack build and install modules from CPAN - -*homepage*: - -version | toolchain ---------|---------- -``1.7039`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/petsc4py.md b/docs/version-specific/supported-software/p/petsc4py.md index 0214c2e29b..cb71c4f224 100644 --- a/docs/version-specific/supported-software/p/petsc4py.md +++ b/docs/version-specific/supported-software/p/petsc4py.md @@ -8,12 +8,11 @@ petsc4py are Python bindings for PETSc, the Portable, Extensible Toolchain for S *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.12.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``3.15.0`` | | ``foss/2021a`` -``3.20.3`` | | ``foss/2023a`` -``3.9.1`` | ``-Python-3.6.4`` | ``foss/2018a`` +version | toolchain +--------|---------- +``3.15.0`` | ``foss/2021a`` +``3.17.4`` | ``foss/2022a`` +``3.20.3`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pftoolsV3.md b/docs/version-specific/supported-software/p/pftoolsV3.md index 338789c1ef..35056b97ab 100644 --- a/docs/version-specific/supported-software/p/pftoolsV3.md +++ b/docs/version-specific/supported-software/p/pftoolsV3.md @@ -4,13 +4,12 @@ search: --- # pftoolsV3 -The pftools package contains all the software necessary to build protein and DNA generalized profiles and use them to scan and align sequences, and search databases. +A suite of tools to build and search generalized profiles (protein and DNA). -*homepage*: +*homepage*: version | toolchain --------|---------- -``20160324`` | ``foss/2016a`` ``3.2.11`` | ``GCCcore/10.3.0`` ``3.2.11`` | ``foss/2021a`` ``3.2.12`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/p/phonemizer.md b/docs/version-specific/supported-software/p/phonemizer.md index b5aaaee10a..3730461590 100644 --- a/docs/version-specific/supported-software/p/phonemizer.md +++ b/docs/version-specific/supported-software/p/phonemizer.md @@ -8,10 +8,9 @@ The phonemizer allows simple phonemization of words and texts in many languages. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.2.1`` | ``-Python-3.8.2`` | ``gompi/2020a`` -``3.2.1`` | | ``gfbf/2023a`` +version | toolchain +--------|---------- +``3.2.1`` | ``gfbf/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/phono3py.md b/docs/version-specific/supported-software/p/phono3py.md index bd7d009c37..b28cb4d0d2 100644 --- a/docs/version-specific/supported-software/p/phono3py.md +++ b/docs/version-specific/supported-software/p/phono3py.md @@ -4,16 +4,13 @@ search: --- # phono3py -phono3py calculates phonon-phonon interaction and related properties using the supercell approach. +A simulation package of phonon-phonon interaction related properties. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.12.5.35`` | ``-Python-2.7.14`` | ``intel/2017b`` -``1.12.7.55`` | ``-Python-2.7.14`` | ``foss/2018a`` -``1.12.7.55`` | ``-Python-2.7.14`` | ``intel/2018a`` -``2.7.0`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``2.7.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/phonopy.md b/docs/version-specific/supported-software/p/phonopy.md index 0ccaeff8d6..7a291fa83b 100644 --- a/docs/version-specific/supported-software/p/phonopy.md +++ b/docs/version-specific/supported-software/p/phonopy.md @@ -6,23 +6,13 @@ search: Phonopy is an open source package of phonon calculations based on the supercell approach. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.10.1`` | ``-Python-2.7.11`` | ``intel/2016a`` -``1.12.2.20`` | ``-Python-2.7.14`` | ``intel/2017b`` -``1.12.6.66`` | ``-Python-2.7.14`` | ``foss/2018a`` -``1.12.6.66`` | ``-Python-2.7.14`` | ``intel/2018a`` -``1.13.0.64`` | ``-Python-2.7.14`` | ``intel/2018a`` -``1.14.2`` | ``-Python-2.7.15`` | ``intel/2018b`` -``2.0.0`` | ``-Python-2.7.14`` | ``intel/2018a`` -``2.12.0`` | | ``foss/2020b`` -``2.16.3`` | | ``foss/2022a`` -``2.2.0`` | ``-Python-3.7.2`` | ``intel/2019a`` -``2.20.0`` | | ``foss/2023a`` -``2.7.1`` | ``-Python-3.7.4`` | ``intel/2019b`` -``2.7.1`` | ``-Python-3.8.2`` | ``intel/2020a`` +version | toolchain +--------|---------- +``2.12.0`` | ``foss/2020b`` +``2.16.3`` | ``foss/2022a`` +``2.20.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/LSMS.md b/docs/version-specific/supported-software/p/phylo-treetime.md similarity index 62% rename from docs/version-specific/supported-software/l/LSMS.md rename to docs/version-specific/supported-software/p/phylo-treetime.md index 3e458916b5..fb0158eeff 100644 --- a/docs/version-specific/supported-software/l/LSMS.md +++ b/docs/version-specific/supported-software/p/phylo-treetime.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# LSMS +# phylo-treetime -LSMS benchmark, part of CORAL suite +TreeTime provides routines for ancestral sequence reconstruction and inference of molecular-clock phylogenies, i.e., a tree where all branches are scaled such that the positions of terminal nodes correspond to their sampling times and internal nodes are placed at the most likely time of divergence. -*homepage*: +*homepage*: version | toolchain --------|---------- -``3_rev237`` | ``foss/2016a`` +``0.11.4`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/phylokit.md b/docs/version-specific/supported-software/p/phylokit.md deleted file mode 100644 index 4eadd3c0d1..0000000000 --- a/docs/version-specific/supported-software/p/phylokit.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# phylokit - -C++ library for high performance phylogenetics - -*homepage*: - -version | toolchain ---------|---------- -``1.0`` | ``GCC/8.2.0-2.31.1`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/phylonaut.md b/docs/version-specific/supported-software/p/phylonaut.md deleted file mode 100644 index ed71740e6a..0000000000 --- a/docs/version-specific/supported-software/p/phylonaut.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# phylonaut - -Dynamic programming for phylogenetics applications - -*homepage*: - -version | toolchain ---------|---------- -``20190626`` | ``gompi/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/phyluce.md b/docs/version-specific/supported-software/p/phyluce.md index fbad4b1f96..cd23d1b4c0 100644 --- a/docs/version-specific/supported-software/p/phyluce.md +++ b/docs/version-specific/supported-software/p/phyluce.md @@ -4,7 +4,7 @@ search: --- # phyluce -phyluce is a software package for working with data generated from sequence capture of UCE (ultra-conserved element) loci, as first published in [BCF2012]. Specifically, phyluce is a suite of programs to: 1) assemble raw sequence reads from Illumina platforms into contigs 2) determine which contigs represent UCE loci 3) filter potentially paralagous UCE loci 4) generate different sets of UCE loci across taxa of interest +phyluce is a software package for working with data generated from sequence capture of UCE (ultra-conserved element) loci, as first published in [BCF2012]. Specifically, phyluce is a suite of programs to: 1) assemble raw sequence reads from Illumina platforms into contigs 2) determine which contigs represent UCE loci 3) filter potentially paralagous UCE loci 4) generate different sets of UCE loci across taxa of interest *homepage*: diff --git a/docs/version-specific/supported-software/p/phyx.md b/docs/version-specific/supported-software/p/phyx.md index b712bde041..d8c5a24580 100644 --- a/docs/version-specific/supported-software/p/phyx.md +++ b/docs/version-specific/supported-software/p/phyx.md @@ -10,7 +10,6 @@ phyx performs phylogenetics analyses on trees and sequences. version | toolchain --------|---------- -``1.01`` | ``foss/2019a`` ``1.3`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/p/piSvM-JSC.md b/docs/version-specific/supported-software/p/piSvM-JSC.md deleted file mode 100644 index bb01730c88..0000000000 --- a/docs/version-specific/supported-software/p/piSvM-JSC.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# piSvM-JSC - -piSvM is a parallel implementation of the Support Vector Machine (SVM) algorithm that allows efficient training and testing on a multiprocessor system. This version is a fork of the original PiSvM to increase scalability. - -*homepage*: - -version | toolchain ---------|---------- -``1.2-20150622`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/piSvM.md b/docs/version-specific/supported-software/p/piSvM.md deleted file mode 100644 index d87a3766e9..0000000000 --- a/docs/version-specific/supported-software/p/piSvM.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# piSvM - -piSvM is a parallel implementation of the Support Vector Machine (SVM) algorithm that allows efficient training and testing on a multiprocessor system. - -*homepage*: - -version | toolchain ---------|---------- -``1.3`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/picard.md b/docs/version-specific/supported-software/p/picard.md index 4b21361e51..60980f6011 100644 --- a/docs/version-specific/supported-software/p/picard.md +++ b/docs/version-specific/supported-software/p/picard.md @@ -6,39 +6,19 @@ search: A set of tools (in Java) for working with next generation sequencing data in the BAM format. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.100`` | | ``system`` -``1.109`` | | ``system`` -``1.119`` | ``-Java-1.7.0_80`` | ``system`` -``1.119`` | | ``system`` -``1.120`` | ``-Java-1.8.0_66`` | ``system`` -``1.141`` | ``-Java-1.8.0_74`` | ``system`` -``1.39`` | | ``system`` -``2.0.1`` | ``-Java-1.8.0_66`` | ``system`` -``2.1.0`` | ``-Java-1.8.0_74`` | ``system`` -``2.1.0`` | | ``system`` -``2.1.1`` | ``-Java-1.8.0_112`` | ``system`` -``2.1.1`` | ``-Java-1.8.0_74`` | ``system`` -``2.10.1`` | ``-Java-1.8.0_131`` | ``system`` -``2.18.11`` | ``-Java-1.8.0_162`` | ``system`` -``2.18.14`` | ``-Java-1.8`` | ``system`` -``2.18.17`` | ``-Java-1.8`` | ``system`` -``2.18.27`` | ``-Java-1.8`` | ``system`` -``2.18.5`` | ``-Java-1.8.0_162`` | ``system`` -``2.2.4`` | ``-Java-1.8.0_92`` | ``system`` ``2.20.6`` | ``-Java-1.8`` | ``system`` -``2.21.1`` | ``-Java-11`` | ``system`` ``2.21.6`` | ``-Java-11`` | ``system`` ``2.22.1`` | ``-Java-11`` | ``system`` ``2.25.0`` | ``-Java-11`` | ``system`` ``2.25.1`` | ``-Java-11`` | ``system`` ``2.25.5`` | ``-Java-13`` | ``system`` ``2.26.10`` | ``-Java-15`` | ``system`` -``2.6.0`` | ``-Java-1.8.0_131`` | ``system`` ``3.0.0`` | ``-Java-17`` | ``system`` +``3.3.0`` | ``-Java-17`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pigz.md b/docs/version-specific/supported-software/p/pigz.md index 88d8182db2..d1ef36e0f0 100644 --- a/docs/version-specific/supported-software/p/pigz.md +++ b/docs/version-specific/supported-software/p/pigz.md @@ -4,21 +4,13 @@ search: --- # pigz -pigz, which stands for parallel implementation of gzip, is a fully functional replacement for gzip that exploits multiple processors and multiple cores to the hilt when compressing data. pigz was written by Mark Adler, and uses the zlib and pthread libraries. +pigz, which stands for parallel implementation of gzip, is a fully functional replacement for gzip that exploits multiple processors and multiple cores to the hilt when compressing data. pigz was written by Mark Adler, and uses the zlib and pthread libraries. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.3.3`` | ``foss/2016b`` -``2.3.4`` | ``GCCcore/6.4.0`` ``2.4`` | ``GCCcore/10.2.0`` -``2.4`` | ``GCCcore/6.4.0`` -``2.4`` | ``GCCcore/7.3.0`` -``2.4`` | ``GCCcore/8.2.0`` -``2.4`` | ``GCCcore/8.3.0`` -``2.4`` | ``GCCcore/9.3.0`` -``2.4`` | ``foss/2018a`` ``2.6`` | ``GCCcore/10.2.0`` ``2.6`` | ``GCCcore/10.3.0`` ``2.6`` | ``GCCcore/11.2.0`` @@ -26,6 +18,7 @@ version | toolchain ``2.7`` | ``GCCcore/12.2.0`` ``2.8`` | ``GCCcore/12.3.0`` ``2.8`` | ``GCCcore/13.2.0`` +``2.8`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pip.md b/docs/version-specific/supported-software/p/pip.md deleted file mode 100644 index eab555b447..0000000000 --- a/docs/version-specific/supported-software/p/pip.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pip - -The PyPA recommended tool for installing Python packages. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``8.0.2`` | ``-Python-2.7.11`` | ``intel/2016a`` -``8.1.2`` | ``-Python-2.7.11`` | ``foss/2016a`` -``8.1.2`` | ``-Python-2.7.12`` | ``foss/2016b`` -``8.1.2`` | ``-Python-2.7.12`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pixman.md b/docs/version-specific/supported-software/p/pixman.md index 48610d6944..0e12498d7b 100644 --- a/docs/version-specific/supported-software/p/pixman.md +++ b/docs/version-specific/supported-software/p/pixman.md @@ -10,17 +10,6 @@ Pixman is a low-level software library for pixel manipulation, providing featur version | toolchain --------|---------- -``0.34.0`` | ``GCCcore/5.4.0`` -``0.34.0`` | ``GCCcore/6.3.0`` -``0.34.0`` | ``GCCcore/6.4.0`` -``0.34.0`` | ``GCCcore/7.3.0`` -``0.34.0`` | ``foss/2016a`` -``0.34.0`` | ``foss/2016b`` -``0.34.0`` | ``intel/2016a`` -``0.34.0`` | ``intel/2016b`` -``0.38.0`` | ``GCCcore/8.2.0`` -``0.38.4`` | ``GCCcore/8.3.0`` -``0.38.4`` | ``GCCcore/9.3.0`` ``0.40.0`` | ``GCCcore/10.2.0`` ``0.40.0`` | ``GCCcore/10.3.0`` ``0.40.0`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/p/pizzly.md b/docs/version-specific/supported-software/p/pizzly.md deleted file mode 100644 index 9c845dbb8f..0000000000 --- a/docs/version-specific/supported-software/p/pizzly.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pizzly - -Pizzly is a program for detecting gene fusions from RNA-Seq data of cancer samples. - -*homepage*: - -version | toolchain ---------|---------- -``0.37.3`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pkg-config.md b/docs/version-specific/supported-software/p/pkg-config.md index 6e8efcc333..0912bdbf26 100644 --- a/docs/version-specific/supported-software/p/pkg-config.md +++ b/docs/version-specific/supported-software/p/pkg-config.md @@ -4,42 +4,18 @@ search: --- # pkg-config -pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other libraries). +pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other libraries). -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.28`` | ``GCC/4.8.2`` -``0.28`` | ``GCC/4.9.2`` -``0.28`` | ``GNU/4.9.3-2.25`` -``0.29`` | ``foss/2016a`` -``0.29`` | ``gimkl/2.11.5`` -``0.29`` | ``intel/2016a`` -``0.29.1`` | ``GCCcore/4.9.3`` -``0.29.1`` | ``GCCcore/5.4.0`` -``0.29.1`` | ``GCCcore/6.3.0`` -``0.29.1`` | ``foss/2016a`` -``0.29.1`` | ``foss/2016b`` -``0.29.1`` | ``foss/2017a`` -``0.29.1`` | ``gimkl/2017a`` -``0.29.1`` | ``intel/2016a`` -``0.29.1`` | ``intel/2016b`` -``0.29.1`` | ``intel/2017a`` ``0.29.2`` | ``GCCcore/10.2.0`` ``0.29.2`` | ``GCCcore/10.3.0`` ``0.29.2`` | ``GCCcore/11.2.0`` ``0.29.2`` | ``GCCcore/11.3.0`` ``0.29.2`` | ``GCCcore/12.2.0`` -``0.29.2`` | ``GCCcore/6.3.0`` -``0.29.2`` | ``GCCcore/6.4.0`` -``0.29.2`` | ``GCCcore/7.2.0`` -``0.29.2`` | ``GCCcore/7.3.0`` -``0.29.2`` | ``GCCcore/8.2.0`` -``0.29.2`` | ``GCCcore/8.3.0`` -``0.29.2`` | ``GCCcore/9.3.0`` -``0.29.2`` | ``intel/2017a`` -``0.29.2`` | ``system`` +``0.29.2`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pkgconf.md b/docs/version-specific/supported-software/p/pkgconf.md index d92f5c3305..1d58cbcfb0 100644 --- a/docs/version-specific/supported-software/p/pkgconf.md +++ b/docs/version-specific/supported-software/p/pkgconf.md @@ -20,6 +20,8 @@ version | toolchain ``2.0.3`` | ``GCCcore/13.2.0`` ``2.2.0`` | ``GCCcore/13.3.0`` ``2.2.0`` | ``system`` +``2.3.0`` | ``GCCcore/14.2.0`` +``2.3.0`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pkgconfig.md b/docs/version-specific/supported-software/p/pkgconfig.md index 4a58ba67c4..86039a5c39 100644 --- a/docs/version-specific/supported-software/p/pkgconfig.md +++ b/docs/version-specific/supported-software/p/pkgconfig.md @@ -10,37 +10,7 @@ pkgconfig is a Python module to interface with the pkg-config command line tool version | versionsuffix | toolchain --------|---------------|---------- -``1.1.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``1.1.0`` | ``-Python-3.5.1`` | ``foss/2016a`` -``1.1.0`` | ``-Python-2.7.12`` | ``foss/2016b`` -``1.1.0`` | ``-Python-3.5.2`` | ``foss/2016b`` -``1.1.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``1.1.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.1.0`` | ``-Python-3.5.2`` | ``intel/2016b`` -``1.2.2`` | ``-Python-2.7.13`` | ``foss/2017a`` -``1.2.2`` | ``-Python-3.6.1`` | ``foss/2017a`` -``1.2.2`` | ``-Python-2.7.14`` | ``foss/2017b`` -``1.2.2`` | ``-Python-3.6.3`` | ``foss/2017b`` -``1.2.2`` | ``-Python-2.7.14`` | ``fosscuda/2017b`` -``1.2.2`` | ``-Python-3.6.3`` | ``fosscuda/2017b`` -``1.2.2`` | ``-Python-2.7.13`` | ``intel/2017a`` -``1.2.2`` | ``-Python-3.6.1`` | ``intel/2017a`` -``1.2.2`` | ``-Python-2.7.14`` | ``intel/2017b`` -``1.2.2`` | ``-Python-3.6.3`` | ``intel/2017b`` -``1.3.1`` | ``-Python-2.7.14`` | ``foss/2018a`` -``1.3.1`` | ``-Python-3.6.4`` | ``foss/2018a`` -``1.3.1`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.3.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.3.1`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` -``1.3.1`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` -``1.3.1`` | ``-Python-2.7.14`` | ``intel/2018a`` -``1.3.1`` | ``-Python-3.6.4`` | ``intel/2018a`` -``1.3.1`` | ``-Python-2.7.15`` | ``intel/2018b`` -``1.3.1`` | ``-Python-3.6.6`` | ``intel/2018b`` ``1.5.1`` | ``-python`` | ``GCCcore/10.2.0`` -``1.5.1`` | ``-python`` | ``GCCcore/8.2.0`` -``1.5.1`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``1.5.1`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` ``1.5.4`` | ``-python`` | ``GCCcore/10.3.0`` ``1.5.5`` | ``-python`` | ``GCCcore/11.2.0`` ``1.5.5`` | ``-python`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/p/plantcv.md b/docs/version-specific/supported-software/p/plantcv.md deleted file mode 100644 index 14f50cb632..0000000000 --- a/docs/version-specific/supported-software/p/plantcv.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# plantcv - -PlantCV: Plant phenotyping using computer vision. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.8.0`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/plc.md b/docs/version-specific/supported-software/p/plc.md index 2d9e65c8b0..1e9f141e41 100644 --- a/docs/version-specific/supported-software/p/plc.md +++ b/docs/version-specific/supported-software/p/plc.md @@ -4,16 +4,13 @@ search: --- # plc -plc is the public Planck Likelihood Code. It provides C and Fortran libraries that allow users to compute the log likelihoods of the temperature, polarization, and lensing maps. Optionally, it also provides a python version of this library, as well as tools to modify the predetermined options for some likelihoods (e.g. changing the high-ell and low-ell lmin and lmax values of the temperature). +plc is the public Planck Likelihood Code. It provides C and Fortran libraries that allow users to compute the log likelihoods of the temperature, polarization, and lensing maps. Optionally, it also provides a python version of this library, as well as tools to modify the predetermined options for some likelihoods (e.g. changing the high-ell and low-ell lmin and lmax values of the temperature). -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0.1`` | ``-Python-2.7.15`` | ``foss/2019a`` -``3.0.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``3.0.1`` | ``-Python-2.7.15`` | ``intel/2018b`` -``3.10`` | | ``intel/2022a`` +version | toolchain +--------|---------- +``3.10`` | ``intel/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/plinkQC.md b/docs/version-specific/supported-software/p/plinkQC.md deleted file mode 100644 index fc8152e942..0000000000 --- a/docs/version-specific/supported-software/p/plinkQC.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# plinkQC - -plinkQC is a R/CRAN package for genotype quality control in genetic association studies. It makes PLINK basic statistics (e.g.missing genotyping rates per individual, allele frequencies per genetic marker) and relationship functions easily accessible from within R and allows for automatic evaluation of the results. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.3.3`` | ``-R-4.0.0`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/plotly-orca.md b/docs/version-specific/supported-software/p/plotly-orca.md index 920836f2fd..f95da02f9e 100644 --- a/docs/version-specific/supported-software/p/plotly-orca.md +++ b/docs/version-specific/supported-software/p/plotly-orca.md @@ -10,10 +10,8 @@ Orca is an Electron app that generates images and reports of Plotly things like version | toolchain --------|---------- -``1.3.0`` | ``GCCcore/8.3.0`` ``1.3.1`` | ``GCCcore/10.2.0`` ``1.3.1`` | ``GCCcore/12.3.0`` -``1.3.1`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/plotly.md b/docs/version-specific/supported-software/p/plotly.md deleted file mode 100644 index 6bf4b53733..0000000000 --- a/docs/version-specific/supported-software/p/plotly.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# plotly - -Easily translate 'ggplot2' graphs to an interactive web-based version and/or create custom web-based visualizations directly from R. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``4.7.1`` | ``-R-3.4.0`` | ``intel/2017a`` -``4.8.0`` | ``-R-3.4.4`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/plotly.py.md b/docs/version-specific/supported-software/p/plotly.py.md index 6b0847ab57..bb9f9d700b 100644 --- a/docs/version-specific/supported-software/p/plotly.py.md +++ b/docs/version-specific/supported-software/p/plotly.py.md @@ -10,16 +10,14 @@ An open-source, interactive graphing library for Python version | toolchain --------|---------- -``4.1.0`` | ``intel/2019a`` ``4.14.3`` | ``GCCcore/10.2.0`` ``4.14.3`` | ``GCCcore/10.3.0`` -``4.4.1`` | ``intel/2019b`` -``4.8.1`` | ``GCCcore/9.3.0`` ``5.1.0`` | ``GCCcore/10.3.0`` ``5.12.0`` | ``GCCcore/11.3.0`` ``5.13.1`` | ``GCCcore/12.2.0`` ``5.16.0`` | ``GCCcore/12.3.0`` ``5.18.0`` | ``GCCcore/13.2.0`` +``5.24.1`` | ``GCCcore/13.3.0`` ``5.4.0`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/p/plotutils.md b/docs/version-specific/supported-software/p/plotutils.md index e884a4be66..60a7ecaf41 100644 --- a/docs/version-specific/supported-software/p/plotutils.md +++ b/docs/version-specific/supported-software/p/plotutils.md @@ -4,7 +4,7 @@ search: --- # plotutils -The GNU plotutils package contains software for both programmers and technical users. Its centerpiece is libplot, a powerful C/C++ function library for exporting 2-D vector graphics in many file formats, both vector and bitmap. On the X Window System, it can also do 2-D vector graphics animations. libplot is device-independent, in the sense that its API (application programming interface) does not depend on the type of graphics file to be exported. A Postscript-like API is used both for file export and for graphics animations. A libplot programmer needs to learn only one API: not the details of many graphics file formats. +The GNU plotutils package contains software for both programmers and technical users. Its centerpiece is libplot, a powerful C/C++ function library for exporting 2-D vector graphics in many file formats, both vector and bitmap. On the X Window System, it can also do 2-D vector graphics animations. libplot is device-independent, in the sense that its API (application programming interface) does not depend on the type of graphics file to be exported. A Postscript-like API is used both for file export and for graphics animations. A libplot programmer needs to learn only one API: not the details of many graphics file formats. *homepage*: diff --git a/docs/version-specific/supported-software/p/pmt.md b/docs/version-specific/supported-software/p/pmt.md index 3f4ee804d0..2285f5f3a7 100644 --- a/docs/version-specific/supported-software/p/pmt.md +++ b/docs/version-specific/supported-software/p/pmt.md @@ -4,7 +4,7 @@ search: --- # pmt -PMT is a high-level software library capable of collecting power consumption measurements on various hardware. +PMT is a high-level software library capable of collecting power consumption measurements on various hardware. *homepage*: @@ -15,6 +15,7 @@ version | versionsuffix | toolchain ``1.2.0`` | | ``GCCcore/11.3.0`` ``1.2.0`` | ``-CUDA-12.1.1`` | ``GCCcore/12.3.0`` ``1.2.0`` | | ``GCCcore/12.3.0`` +``1.3.1`` | ``-CUDA-12.6.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pmx.md b/docs/version-specific/supported-software/p/pmx.md index d5ab25247d..738908291c 100644 --- a/docs/version-specific/supported-software/p/pmx.md +++ b/docs/version-specific/supported-software/p/pmx.md @@ -11,6 +11,7 @@ pmx (formerly pymacs) is a small bunch of classes to read structure files such a version | versionsuffix | toolchain --------|---------------|---------- ``2.0`` | ``-Python-2.7.18`` | ``foss/2020b`` +``20241209`` | | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pocl.md b/docs/version-specific/supported-software/p/pocl.md index 5ea2a79335..b9c3921124 100644 --- a/docs/version-specific/supported-software/p/pocl.md +++ b/docs/version-specific/supported-software/p/pocl.md @@ -6,16 +6,10 @@ search: Pocl is a portable open source (MIT-licensed) implementation of the OpenCL standard -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.2`` | | ``GCC/7.3.0-2.30`` -``1.3`` | | ``GCC/8.2.0-2.31.1`` -``1.3`` | | ``gcccuda/2019a`` -``1.4`` | | ``GCC/8.3.0`` -``1.4`` | | ``gcccuda/2019b`` -``1.5`` | | ``GCC/9.3.0`` ``1.6`` | | ``GCC/10.2.0`` ``1.6`` | | ``gcccuda/2020b`` ``1.6`` | | ``iccifort/2020.4.304`` diff --git a/docs/version-specific/supported-software/p/poetry.md b/docs/version-specific/supported-software/p/poetry.md index 59e011c8aa..3a965a08e9 100644 --- a/docs/version-specific/supported-software/p/poetry.md +++ b/docs/version-specific/supported-software/p/poetry.md @@ -4,18 +4,17 @@ search: --- # poetry -Python packaging and dependency management made easy +Python packaging and dependency management made easy. Poetry helps you declare, manage and install dependencies of Python projects, ensuring you have the right stack everywhere. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.9`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` -``1.2.2`` | | ``GCCcore/11.3.0`` -``1.5.1`` | | ``GCCcore/12.3.0`` -``1.6.1`` | | ``GCCcore/13.2.0`` -``1.7.1`` | | ``GCCcore/12.3.0`` -``1.8.3`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``1.2.2`` | ``GCCcore/11.3.0`` +``1.5.1`` | ``GCCcore/12.3.0`` +``1.6.1`` | ``GCCcore/13.2.0`` +``1.7.1`` | ``GCCcore/12.3.0`` +``1.8.3`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/polars.md b/docs/version-specific/supported-software/p/polars.md index 910b418afb..8f63b1a607 100644 --- a/docs/version-specific/supported-software/p/polars.md +++ b/docs/version-specific/supported-software/p/polars.md @@ -11,6 +11,7 @@ Lightning-fast DataFrame library for Rust and Python. version | toolchain --------|---------- ``0.15.6`` | ``foss/2022a`` +``0.19.19`` | ``gfbf/2023a`` ``0.20.2`` | ``gfbf/2023a`` diff --git a/docs/version-specific/supported-software/p/polymake.md b/docs/version-specific/supported-software/p/polymake.md index aa174779b5..17067e00e2 100644 --- a/docs/version-specific/supported-software/p/polymake.md +++ b/docs/version-specific/supported-software/p/polymake.md @@ -10,7 +10,6 @@ polymake is open source software for research in polyhedral geometry. It deals w version | toolchain --------|---------- -``4.0r1`` | ``foss/2019b`` ``4.8`` | ``foss/2021b`` ``4.8`` | ``gfbf/2022a`` diff --git a/docs/version-specific/supported-software/p/pomkl.md b/docs/version-specific/supported-software/p/pomkl.md deleted file mode 100644 index 37e4267efb..0000000000 --- a/docs/version-specific/supported-software/p/pomkl.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pomkl - -Toolchain with PGI C, C++ and Fortran compilers, alongside Intel MKL & OpenMPI. - -*homepage*: - -version | toolchain ---------|---------- -``2016.03`` | ``system`` -``2016.04`` | ``system`` -``2016.09`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pompi.md b/docs/version-specific/supported-software/p/pompi.md deleted file mode 100644 index ba813121ae..0000000000 --- a/docs/version-specific/supported-software/p/pompi.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pompi - -Toolchain with PGI C, C++ and Fortran compilers, alongside OpenMPI. - -*homepage*: - -version | toolchain ---------|---------- -``2016.03`` | ``system`` -``2016.04`` | ``system`` -``2016.09`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/poppler.md b/docs/version-specific/supported-software/p/poppler.md index f319cfe6e5..ab03d950c7 100644 --- a/docs/version-specific/supported-software/p/poppler.md +++ b/docs/version-specific/supported-software/p/poppler.md @@ -4,14 +4,12 @@ search: --- # poppler -Poppler is a PDF rendering library based on the xpdf-3.0 code base. +Poppler is a PDF rendering library -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.70.1`` | ``foss/2018b`` -``0.90.1`` | ``GCCcore/8.3.0`` ``21.06.1`` | ``GCC/10.2.0`` ``21.06.1`` | ``GCC/10.3.0`` ``22.01.0`` | ``GCC/11.2.0`` diff --git a/docs/version-specific/supported-software/p/poppunk.md b/docs/version-specific/supported-software/p/poppunk.md index 6eb16bee6a..bf48200ffa 100644 --- a/docs/version-specific/supported-software/p/poppunk.md +++ b/docs/version-specific/supported-software/p/poppunk.md @@ -4,7 +4,7 @@ search: --- # poppunk -PopPUNK is a tool for clustering genomes. We refer to the clusters as variable-length-k-mer clusters, or VLKCs. Biologically, these clusters typically represent distinct strains. We refer to subclusters of strains as lineages. +PopPUNK is a tool for clustering genomes. We refer to the clusters as variable-length-k-mer clusters, or VLKCs. Biologically, these clusters typically represent distinct strains. We refer to subclusters of strains as lineages. *homepage*: diff --git a/docs/version-specific/supported-software/p/popscle.md b/docs/version-specific/supported-software/p/popscle.md index c78a22adaf..a9b4519120 100644 --- a/docs/version-specific/supported-software/p/popscle.md +++ b/docs/version-specific/supported-software/p/popscle.md @@ -4,14 +4,13 @@ search: --- # popscle -A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools +A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxiliary tools *homepage*: version | toolchain --------|---------- ``0.1-beta-20210505`` | ``GCC/11.3.0`` -``0.1-beta`` | ``foss/2019b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/popt.md b/docs/version-specific/supported-software/p/popt.md index bf643f46f7..613807143a 100644 --- a/docs/version-specific/supported-software/p/popt.md +++ b/docs/version-specific/supported-software/p/popt.md @@ -6,14 +6,12 @@ search: Popt is a C library for parsing command line parameters. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.14`` | ``GCC/4.8.2`` ``1.16`` | ``GCC/10.2.0`` -``1.16`` | ``GCC/4.9.2`` -``1.16`` | ``system`` +``1.18`` | ``system`` ``1.19`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/p/porefoam.md b/docs/version-specific/supported-software/p/porefoam.md deleted file mode 100644 index 65fb5c6758..0000000000 --- a/docs/version-specific/supported-software/p/porefoam.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# porefoam - -Direct pore-scale simulation of single- and two-phase flow through confined media - -*homepage*: - -version | toolchain ---------|---------- -``2021-09-21`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/poretools.md b/docs/version-specific/supported-software/p/poretools.md deleted file mode 100644 index 8dfb6e484a..0000000000 --- a/docs/version-specific/supported-software/p/poretools.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# poretools - -A toolkit for working with nanopore sequencing data from Oxford Nanopore. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.6.0`` | ``-Python-2.7.14`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/ppl.md b/docs/version-specific/supported-software/p/ppl.md index ad8d012542..ce6f2783ef 100644 --- a/docs/version-specific/supported-software/p/ppl.md +++ b/docs/version-specific/supported-software/p/ppl.md @@ -4,14 +4,13 @@ search: --- # ppl -The Parma Polyhedra Library (PPL) provides numerical abstractions especially targeted at applications in the field of analysis and verification of complex systems. +The Parma Polyhedra Library (PPL) provides numerical abstractions especially targeted at applications in the field of analysis and verification of complex systems. *homepage*: version | toolchain --------|---------- ``1.2`` | ``GCCcore/11.3.0`` -``1.2`` | ``GCCcore/6.4.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pplpy.md b/docs/version-specific/supported-software/p/pplpy.md index 40b2e87579..269509331d 100644 --- a/docs/version-specific/supported-software/p/pplpy.md +++ b/docs/version-specific/supported-software/p/pplpy.md @@ -8,13 +8,9 @@ This Python package provides a wrapper to the C++ Parma Polyhedra Library (PPL). *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.8.4`` | ``-Python-2.7.14`` | ``foss/2017b`` -``0.8.4`` | ``-Python-3.6.3`` | ``foss/2017b`` -``0.8.4`` | ``-Python-2.7.14`` | ``intel/2017b`` -``0.8.4`` | ``-Python-3.6.3`` | ``intel/2017b`` -``0.8.9`` | | ``GCC/11.3.0`` +version | toolchain +--------|---------- +``0.8.9`` | ``GCC/11.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SVDetect.md b/docs/version-specific/supported-software/p/pre-commit.md similarity index 55% rename from docs/version-specific/supported-software/s/SVDetect.md rename to docs/version-specific/supported-software/p/pre-commit.md index debd002d10..21c1113e62 100644 --- a/docs/version-specific/supported-software/s/SVDetect.md +++ b/docs/version-specific/supported-software/p/pre-commit.md @@ -2,16 +2,15 @@ search: boost: 0.5 --- -# SVDetect +# pre-commit -SVDetect is a application for the isolation and the type prediction of intra- and inter-chromosomal rearrangements from paired-end/mate-pair sequencing data provided by the high-throughput sequencing technologies. This tool aims to identifying structural variations with both clustering and sliding-window strategies, and helping in their visualization at the genome scale. +A framework for managing and maintaining multi-language pre-commit hooks. Git hook scripts are useful for identifying simple issues before submission to code review. We run our hooks on every commit to automatically point out issues in code such as missing semicolons, trailing whitespace, and debug statements. By pointing these issues out before code review, this allows a code reviewer to focus on the architecture of a change while not wasting time with trivial style nitpicks. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.8b`` | ``-Perl-5.26.0`` | ``GCC/6.4.0-2.28`` -``0.8b`` | ``-Perl-5.26.0`` | ``iccifort/2017.4.196-GCC-6.4.0-2.28`` +version | toolchain +--------|---------- +``3.7.0`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/preCICE.md b/docs/version-specific/supported-software/p/preCICE.md index f24a20630d..b9ff4dad11 100644 --- a/docs/version-specific/supported-software/p/preCICE.md +++ b/docs/version-specific/supported-software/p/preCICE.md @@ -8,12 +8,9 @@ preCICE (Precise Code Interaction Coupling Environment) is a coupling library fo *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``2.2.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``2.2.0`` | ``-Python-3.8.2`` | ``intel/2020a`` -``2.5.0`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``2.5.0`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/preseq.md b/docs/version-specific/supported-software/p/preseq.md index 90c1fc8323..e940e167b0 100644 --- a/docs/version-specific/supported-software/p/preseq.md +++ b/docs/version-specific/supported-software/p/preseq.md @@ -6,13 +6,10 @@ search: Software for predicting library complexity and genome coverage in high-throughput sequencing. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.0.2`` | ``foss/2016b`` -``2.0.3`` | ``foss/2018b`` -``2.0.3`` | ``intel/2018a`` ``3.1.2`` | ``GCC/10.3.0`` ``3.1.2`` | ``GCC/11.2.0`` ``3.2.0`` | ``GCC/11.3.0`` diff --git a/docs/version-specific/supported-software/p/pretty-yaml.md b/docs/version-specific/supported-software/p/pretty-yaml.md index a5e41c3fbd..3dabc46ecf 100644 --- a/docs/version-specific/supported-software/p/pretty-yaml.md +++ b/docs/version-specific/supported-software/p/pretty-yaml.md @@ -10,10 +10,9 @@ PyYAML-based python module to produce pretty and readable YAML-serialized data. version | toolchain --------|---------- -``19.12.0`` | ``GCCcore/8.3.0`` -``20.4.0`` | ``GCCcore/9.3.0`` ``21.10.1`` | ``GCCcore/10.3.0`` ``23.9.5`` | ``GCCcore/11.3.0`` +``24.7.0`` | ``GCCcore/12.3.0`` ``24.7.0`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/p/printproto.md b/docs/version-specific/supported-software/p/printproto.md deleted file mode 100644 index c4d622c05f..0000000000 --- a/docs/version-specific/supported-software/p/printproto.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# printproto - -X.org PrintProto protocol headers. - -*homepage*: - -version | toolchain ---------|---------- -``1.0.5`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/prodigal.md b/docs/version-specific/supported-software/p/prodigal.md index 55264b3a96..3a914b0f55 100644 --- a/docs/version-specific/supported-software/p/prodigal.md +++ b/docs/version-specific/supported-software/p/prodigal.md @@ -4,24 +4,18 @@ search: --- # prodigal -Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laboratory and the University of Tennessee. +Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laboratory and the University of Tennessee. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.6.2`` | ``GCC/4.9.3-binutils-2.25`` ``2.6.3`` | ``GCCcore/10.2.0`` ``2.6.3`` | ``GCCcore/10.3.0`` ``2.6.3`` | ``GCCcore/11.2.0`` ``2.6.3`` | ``GCCcore/11.3.0`` ``2.6.3`` | ``GCCcore/12.2.0`` ``2.6.3`` | ``GCCcore/12.3.0`` -``2.6.3`` | ``GCCcore/6.4.0`` -``2.6.3`` | ``GCCcore/7.3.0`` -``2.6.3`` | ``GCCcore/8.2.0`` -``2.6.3`` | ``GCCcore/8.3.0`` -``2.6.3`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/prokka.md b/docs/version-specific/supported-software/p/prokka.md index e898c00da8..0518df1daa 100644 --- a/docs/version-specific/supported-software/p/prokka.md +++ b/docs/version-specific/supported-software/p/prokka.md @@ -6,21 +6,17 @@ search: Prokka is a software tool for the rapid annotation of prokaryotic genomes. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.11`` | ``-BioPerl-1.7.0`` | ``foss/2016b`` -``1.13`` | ``-BioPerl-1.7.2`` | ``intel/2018a`` -``1.13.4`` | | ``foss/2018b`` -``1.13.7`` | | ``gompi/2019a`` -``1.14.5`` | | ``gompi/2019a`` -``1.14.5`` | | ``gompi/2019b`` -``1.14.5`` | | ``gompi/2020b`` -``1.14.5`` | | ``gompi/2021a`` -``1.14.5`` | | ``gompi/2021b`` -``1.14.5`` | | ``gompi/2022a`` -``1.14.5`` | | ``gompi/2022b`` +version | toolchain +--------|---------- +``1.14.5`` | ``gompi/2020b`` +``1.14.5`` | ``gompi/2021a`` +``1.14.5`` | ``gompi/2021b`` +``1.14.5`` | ``gompi/2022a`` +``1.14.5`` | ``gompi/2022b`` +``1.14.5`` | ``gompi/2023a`` +``1.14.5`` | ``gompi/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/prompt-toolkit.md b/docs/version-specific/supported-software/p/prompt-toolkit.md index e8822fb6ae..5f872f5e77 100644 --- a/docs/version-specific/supported-software/p/prompt-toolkit.md +++ b/docs/version-specific/supported-software/p/prompt-toolkit.md @@ -8,18 +8,12 @@ prompt_toolkit is a Python library for building powerful interactive command lin *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.13`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.0.3`` | ``-Python-2.7.11`` | ``foss/2016a`` -``1.0.3`` | ``-Python-3.5.1`` | ``foss/2016a`` -``1.0.6`` | ``-Python-2.7.12`` | ``foss/2016b`` -``1.0.6`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.0.6`` | ``-Python-3.5.2`` | ``intel/2016b`` -``3.0.36`` | | ``GCCcore/12.2.0`` -``3.0.36`` | | ``GCCcore/12.3.0`` -``3.0.36`` | | ``GCCcore/13.2.0`` -``3.0.36`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``3.0.36`` | ``GCCcore/12.2.0`` +``3.0.36`` | ``GCCcore/12.3.0`` +``3.0.36`` | ``GCCcore/13.2.0`` +``3.0.36`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/proovread.md b/docs/version-specific/supported-software/p/proovread.md deleted file mode 100644 index 085830d975..0000000000 --- a/docs/version-specific/supported-software/p/proovread.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# proovread - -PacBio hybrid error correction through iterative short read consensus - -*homepage*: - -version | toolchain ---------|---------- -``2.14.1`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/propy.md b/docs/version-specific/supported-software/p/propy.md deleted file mode 100644 index 7ef08fe49c..0000000000 --- a/docs/version-specific/supported-software/p/propy.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# propy - -Propy is a protein description software. It allows analyzing sequence-derived structural and physicochemical features, which are very useful in representing and distinguishing proteins or peptides of different structural, functional and interaction properties. These have been widely used in developing methods and software for predicting protein structural and functional classes, protein-protein interactions, drug-target interactions, protein substrates, among others. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0`` | ``-Python-2.7.13`` | ``foss/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/protobuf-python.md b/docs/version-specific/supported-software/p/protobuf-python.md index 65a43b0ed8..e313e9a724 100644 --- a/docs/version-specific/supported-software/p/protobuf-python.md +++ b/docs/version-specific/supported-software/p/protobuf-python.md @@ -8,36 +8,16 @@ Python Protocol Buffers runtime library. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0.2`` | ``-Python-2.7.11`` | ``foss/2016a`` -``3.0.2`` | ``-Python-3.5.1`` | ``foss/2016a`` -``3.10.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``3.10.0`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``3.13.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``3.13.0`` | ``-Python-3.8.2`` | ``fosscuda/2020a`` -``3.14.0`` | | ``GCCcore/10.2.0`` -``3.17.3`` | | ``GCCcore/10.3.0`` -``3.17.3`` | | ``GCCcore/11.2.0`` -``3.19.4`` | | ``GCCcore/11.3.0`` -``3.2.0`` | ``-Python-2.7.12`` | ``foss/2016b`` -``3.2.0`` | ``-Python-3.5.2`` | ``foss/2016b`` -``3.2.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``3.2.0`` | ``-Python-3.5.2`` | ``intel/2016b`` -``3.3.0`` | ``-Python-3.5.2`` | ``foss/2016b`` -``3.3.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``3.3.0`` | ``-Python-3.6.1`` | ``intel/2017a`` -``3.4.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``3.4.0`` | ``-Python-3.6.1`` | ``intel/2017a`` -``3.4.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``3.4.0`` | ``-Python-3.6.3`` | ``intel/2017b`` -``3.6.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``3.6.0`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` -``3.6.0`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` -``4.23.0`` | | ``GCCcore/12.2.0`` -``4.24.0`` | | ``GCCcore/12.3.0`` -``4.25.3`` | | ``GCCcore/13.2.0`` -``5.28.0`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``3.14.0`` | ``GCCcore/10.2.0`` +``3.17.3`` | ``GCCcore/10.3.0`` +``3.17.3`` | ``GCCcore/11.2.0`` +``3.19.4`` | ``GCCcore/11.3.0`` +``4.23.0`` | ``GCCcore/12.2.0`` +``4.24.0`` | ``GCCcore/12.3.0`` +``4.25.3`` | ``GCCcore/13.2.0`` +``5.28.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/protobuf.md b/docs/version-specific/supported-software/p/protobuf.md index bf9c82f3ad..25d7ec91b2 100644 --- a/docs/version-specific/supported-software/p/protobuf.md +++ b/docs/version-specific/supported-software/p/protobuf.md @@ -11,36 +11,15 @@ Google Protocol Buffers version | toolchain --------|---------- ``2.5.0`` | ``GCCcore/10.2.0`` -``2.5.0`` | ``GCCcore/7.3.0`` -``2.5.0`` | ``GCCcore/8.3.0`` -``2.5.0`` | ``system`` -``2.6.1`` | ``system`` ``23.0`` | ``GCCcore/12.2.0`` ``24.0`` | ``GCCcore/12.3.0`` ``25.3`` | ``GCCcore/13.2.0`` ``28.0`` | ``GCCcore/13.3.0`` -``3.0.2`` | ``foss/2016a`` -``3.10.0`` | ``GCCcore/8.3.0`` -``3.10.0`` | ``GCCcore/9.3.0`` -``3.13.0`` | ``GCCcore/9.3.0`` ``3.14.0`` | ``GCCcore/10.2.0`` ``3.17.3`` | ``GCCcore/10.3.0`` ``3.17.3`` | ``GCCcore/11.2.0`` ``3.19.4`` | ``GCCcore/11.3.0`` -``3.2.0`` | ``foss/2016b`` -``3.2.0`` | ``intel/2016b`` ``3.21.9`` | ``GCCcore/10.3.0`` -``3.3.0`` | ``foss/2016b`` -``3.3.0`` | ``intel/2017a`` -``3.4.0`` | ``GCCcore/6.4.0`` -``3.4.0`` | ``intel/2017a`` -``3.4.0`` | ``intel/2017b`` -``3.5.1`` | ``intel/2017b`` -``3.6.0`` | ``GCCcore/7.3.0`` -``3.6.1`` | ``GCCcore/7.3.0`` -``3.6.1.2`` | ``GCCcore/8.2.0`` -``3.7.1`` | ``GCCcore/8.2.0`` -``3.7.1`` | ``GCCcore/8.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/protozero.md b/docs/version-specific/supported-software/p/protozero.md deleted file mode 100644 index f14a4fbf3e..0000000000 --- a/docs/version-specific/supported-software/p/protozero.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# protozero - -Minimalistic protocol buffer decoder and encoder in C++. - -*homepage*: - -version | toolchain ---------|---------- -``1.6.8`` | ``GCCcore/7.3.0`` -``1.7.0`` | ``GCCcore/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pscom.md b/docs/version-specific/supported-software/p/pscom.md deleted file mode 100644 index 2581e28026..0000000000 --- a/docs/version-specific/supported-software/p/pscom.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pscom - -ParaStation is a robust and efficient cluster middleware, consisting of a high-performance communication layer (MPI) and a sophisticated management layer. - -*homepage*: - -version | toolchain ---------|---------- -``5.0.43`` | ``GCC/4.8.2`` -``5.0.44-1`` | ``GCC/4.9.2`` -``5.0.48-1`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/psmc.md b/docs/version-specific/supported-software/p/psmc.md index d7e02dcf03..7a8a189826 100644 --- a/docs/version-specific/supported-software/p/psmc.md +++ b/docs/version-specific/supported-software/p/psmc.md @@ -10,8 +10,6 @@ This software package infers population size history from a diploid sequence usi version | toolchain --------|---------- -``0.6.5`` | ``foss/2016a`` -``0.6.5`` | ``foss/2018a`` ``0.6.5_20221121`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/p/psmpi.md b/docs/version-specific/supported-software/p/psmpi.md deleted file mode 100644 index 7f952852e5..0000000000 --- a/docs/version-specific/supported-software/p/psmpi.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# psmpi - -ParaStation MPI is an open source high-performance MPI 3.0 implementation, based on MPICH v3. It provides extra low level communication libraries and integration with various batch systems for tighter process control. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``5.1.0-1`` | | ``GCC/4.9.2`` -``5.1.5-1`` | ``-mt`` | ``GCC/4.9.3`` -``5.1.5-1`` | | ``GCC/4.9.3`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/psmpi2.md b/docs/version-specific/supported-software/p/psmpi2.md deleted file mode 100644 index cb8f46df91..0000000000 --- a/docs/version-specific/supported-software/p/psmpi2.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# psmpi2 - -ParaStation is a robust and efficient cluster middleware, consisting of a high-performance communication layer (MPI) and a sophisticated management layer. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``5.0.29`` | ``-mt`` | ``GCC/4.8.2`` -``5.0.29`` | | ``GCC/4.8.2`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/psrecord.md b/docs/version-specific/supported-software/p/psrecord.md deleted file mode 100644 index db88a85977..0000000000 --- a/docs/version-specific/supported-software/p/psrecord.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# psrecord - -psrecord is a small utility that uses the psutil library to record the CPU and memory activity of a process. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1`` | ``-Python-2.7.14`` | ``intel/2018a`` -``1.1`` | ``-Python-3.6.4`` | ``intel/2018a`` -``1.1`` | ``-Python-2.7.15`` | ``intel/2018b`` -``1.1`` | ``-Python-3.6.6`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pstoedit.md b/docs/version-specific/supported-software/p/pstoedit.md index 5ce330c325..14baa300a8 100644 --- a/docs/version-specific/supported-software/p/pstoedit.md +++ b/docs/version-specific/supported-software/p/pstoedit.md @@ -10,8 +10,6 @@ pstoedit translates PostScript and PDF graphics into other vector formats version | toolchain --------|---------- -``3.70`` | ``GCCcore/6.3.0`` -``3.70`` | ``GCCcore/6.4.0`` ``3.78`` | ``GCC/11.3.0`` diff --git a/docs/version-specific/supported-software/p/psutil.md b/docs/version-specific/supported-software/p/psutil.md index 3afc52bc3f..d183e3423c 100644 --- a/docs/version-specific/supported-software/p/psutil.md +++ b/docs/version-specific/supported-software/p/psutil.md @@ -8,21 +8,15 @@ A cross-platform process and system utilities module for Python *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.2.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``4.3.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``4.3.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``5.4.3`` | ``-Python-2.7.14`` | ``intel/2017b`` -``5.4.7`` | ``-Python-2.7.15`` | ``foss/2018b`` -``5.4.7`` | ``-Python-3.6.6`` | ``foss/2018b`` -``5.6.1`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` -``5.6.3`` | | ``GCCcore/8.2.0`` -``5.9.3`` | | ``GCCcore/10.2.0`` -``5.9.3`` | | ``GCCcore/11.3.0`` -``5.9.4`` | | ``GCCcore/11.2.0`` -``5.9.5`` | | ``GCCcore/12.2.0`` -``5.9.8`` | | ``GCCcore/12.3.0`` +version | toolchain +--------|---------- +``5.9.3`` | ``GCCcore/10.2.0`` +``5.9.3`` | ``GCCcore/11.3.0`` +``5.9.4`` | ``GCCcore/11.2.0`` +``5.9.5`` | ``GCCcore/12.2.0`` +``5.9.8`` | ``GCCcore/12.3.0`` +``6.0.0`` | ``GCCcore/13.3.0`` +``6.1.0`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/psycopg.md b/docs/version-specific/supported-software/p/psycopg.md index 973c1a6488..80c84ad2be 100644 --- a/docs/version-specific/supported-software/p/psycopg.md +++ b/docs/version-specific/supported-software/p/psycopg.md @@ -13,6 +13,7 @@ version | toolchain ``3.1.18`` | ``GCCcore/12.2.0`` ``3.1.18`` | ``GCCcore/13.2.0`` ``3.2.1`` | ``GCCcore/12.3.0`` +``3.2.3`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/psycopg2.md b/docs/version-specific/supported-software/p/psycopg2.md index 32bd072c83..6db80ed7e7 100644 --- a/docs/version-specific/supported-software/p/psycopg2.md +++ b/docs/version-specific/supported-software/p/psycopg2.md @@ -6,17 +6,13 @@ search: Psycopg is the most popular PostgreSQL adapter for the Python programming language. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.7`` | ``-Python-2.7.12`` | ``foss/2016b`` -``2.7`` | ``-Python-2.7.12`` | ``intel/2016b`` -``2.8.3`` | ``-Python-3.7.2`` | ``foss/2019a`` -``2.8.6`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` -``2.9.5`` | | ``GCCcore/11.2.0`` -``2.9.6`` | | ``GCCcore/11.3.0`` -``2.9.9`` | | ``GCCcore/12.3.0`` +version | toolchain +--------|---------- +``2.9.5`` | ``GCCcore/11.2.0`` +``2.9.6`` | ``GCCcore/11.3.0`` +``2.9.9`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/ptemcee.md b/docs/version-specific/supported-software/p/ptemcee.md deleted file mode 100644 index 7786f4b64f..0000000000 --- a/docs/version-specific/supported-software/p/ptemcee.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ptemcee - -ptemcee, pronounced "tem-cee", is fork of Daniel Foreman-Mackey's wonderful emcee to implement parallel tempering more robustly. If you're trying to characterise awkward, multi-model probability distributions, then ptemcee is your friend. - -*homepage*: - -version | toolchain ---------|---------- -``1.0.0`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pubtcrs.md b/docs/version-specific/supported-software/p/pubtcrs.md deleted file mode 100644 index 2aaf3f15fc..0000000000 --- a/docs/version-specific/supported-software/p/pubtcrs.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pubtcrs - -This repository contains C++ source code for the TCR clustering and correlation analyses described in the manuscript "Human T cell receptor occurrence patterns encode immune history, genetic background, and receptor specificity" by William S DeWitt III, Anajane Smith, Gary Schoch, John A Hansen, Frederick A Matsen IV and Philip Bradley, available on bioRxiv. - -*homepage*: - -version | toolchain ---------|---------- -``20180622`` | ``intel/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pugixml.md b/docs/version-specific/supported-software/p/pugixml.md index 4b36ee6a89..a674e7b9e0 100644 --- a/docs/version-specific/supported-software/p/pugixml.md +++ b/docs/version-specific/supported-software/p/pugixml.md @@ -13,6 +13,7 @@ version | toolchain ``1.11.4`` | ``GCCcore/10.3.0`` ``1.12.1`` | ``GCCcore/11.2.0`` ``1.12.1`` | ``GCCcore/11.3.0`` +``1.14`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pullseq.md b/docs/version-specific/supported-software/p/pullseq.md index c5b9d68e9b..0946ca3437 100644 --- a/docs/version-specific/supported-software/p/pullseq.md +++ b/docs/version-specific/supported-software/p/pullseq.md @@ -12,7 +12,6 @@ version | toolchain --------|---------- ``1.0.2`` | ``GCCcore/10.3.0`` ``1.0.2`` | ``GCCcore/11.2.0`` -``1.0.2`` | ``GCCcore/7.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/purge_dups.md b/docs/version-specific/supported-software/p/purge_dups.md index 25ffa551dc..8c3445abc0 100644 --- a/docs/version-specific/supported-software/p/purge_dups.md +++ b/docs/version-specific/supported-software/p/purge_dups.md @@ -11,6 +11,7 @@ purge haplotigs and overlaps in an assembly based on read depth version | toolchain --------|---------- ``1.2.5`` | ``foss/2021b`` +``1.2.6`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/py-aiger-bdd.md b/docs/version-specific/supported-software/p/py-aiger-bdd.md deleted file mode 100644 index 55cd59bd64..0000000000 --- a/docs/version-specific/supported-software/p/py-aiger-bdd.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# py-aiger-bdd - -Aiger to BDD bridge. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0.0`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/py-aiger.md b/docs/version-specific/supported-software/p/py-aiger.md index ba08c73eed..873a97c774 100644 --- a/docs/version-specific/supported-software/p/py-aiger.md +++ b/docs/version-specific/supported-software/p/py-aiger.md @@ -8,10 +8,9 @@ A python library for manipulating sequential and combinatorial circuits. This mo *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``6.1.1`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` -``6.1.14`` | | ``GCCcore/10.2.0`` +version | toolchain +--------|---------- +``6.1.14`` | ``GCCcore/10.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/py-c3d.md b/docs/version-specific/supported-software/p/py-c3d.md index 4d069089bb..3c4537ab70 100644 --- a/docs/version-specific/supported-software/p/py-c3d.md +++ b/docs/version-specific/supported-software/p/py-c3d.md @@ -4,7 +4,7 @@ search: --- # py-c3d -This is a small library for reading and writing C3D binary files. C3D files are a standard format for recording 3-dimensional time sequence data, especially data recorded by a 3D motion tracking apparatus. +This is a small library for reading and writing C3D binary files. C3D files are a standard format for recording 3-dimensional time sequence data, especially data recorded by a 3D motion tracking apparatus. *homepage*: diff --git a/docs/version-specific/supported-software/p/py-cpuinfo.md b/docs/version-specific/supported-software/p/py-cpuinfo.md index ab3e81303d..9b3b483bed 100644 --- a/docs/version-specific/supported-software/p/py-cpuinfo.md +++ b/docs/version-specific/supported-software/p/py-cpuinfo.md @@ -4,19 +4,19 @@ search: --- # py-cpuinfo -py-cpuinfo gets CPU info with pure Python. +Py-cpuinfo gets CPU info with pure Python. Py-cpuinfo should work without any extra programs or libraries, beyond what your OS provides. It does not require any compilation(C/C++, assembly, et cetera) to use. It works with Python 3. *homepage*: version | toolchain --------|---------- -``5.0.0`` | ``system`` ``8.0.0`` | ``GCCcore/11.2.0`` ``9.0.0`` | ``GCCcore/11.2.0`` ``9.0.0`` | ``GCCcore/11.3.0`` ``9.0.0`` | ``GCCcore/12.2.0`` ``9.0.0`` | ``GCCcore/12.3.0`` ``9.0.0`` | ``GCCcore/13.2.0`` +``9.0.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/py.md b/docs/version-specific/supported-software/p/py.md deleted file mode 100644 index 9f5c50f4b5..0000000000 --- a/docs/version-specific/supported-software/p/py.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# py - -library with cross-python path, ini-parsing, io, code, log facilities - -*homepage*: < https://pylib.readthedocs.org/> - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.4.31`` | ``-Python-2.7.11`` | ``foss/2016a`` -``1.4.31`` | ``-Python-3.5.1`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pyABC.md b/docs/version-specific/supported-software/p/pyABC.md deleted file mode 100644 index b34a6a164a..0000000000 --- a/docs/version-specific/supported-software/p/pyABC.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pyABC - -Massively parallel, distributed and scalable ABC-SMC (Approximate Bayesian Computation - Sequential Monte Carlo) for parameter estimation of complex stochastic models. Implemented in Python with support of the R language. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.4`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pyBigWig.md b/docs/version-specific/supported-software/p/pyBigWig.md index eb47edad0c..0d6207c327 100644 --- a/docs/version-specific/supported-software/p/pyBigWig.md +++ b/docs/version-specific/supported-software/p/pyBigWig.md @@ -4,21 +4,18 @@ search: --- # pyBigWig -A python extension, written in C, for quick access to bigBed files and access to and creation of bigWig files. +A python extension, written in C, for quick access to bigBed files and access to and creation of bigWig files. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.3.13`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.3.17`` | | ``GCCcore/8.2.0`` -``0.3.17`` | | ``GCCcore/9.3.0`` -``0.3.18`` | | ``GCCcore/10.2.0`` -``0.3.18`` | | ``foss/2021a`` -``0.3.18`` | | ``foss/2021b`` -``0.3.18`` | | ``foss/2022a`` -``0.3.22`` | | ``foss/2022b`` -``0.3.22`` | | ``gfbf/2023a`` +version | toolchain +--------|---------- +``0.3.18`` | ``GCCcore/10.2.0`` +``0.3.18`` | ``foss/2021a`` +``0.3.18`` | ``foss/2021b`` +``0.3.18`` | ``foss/2022a`` +``0.3.22`` | ``foss/2022b`` +``0.3.22`` | ``gfbf/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pyEGA3.md b/docs/version-specific/supported-software/p/pyEGA3.md index f5651d56b8..02f1a9c3aa 100644 --- a/docs/version-specific/supported-software/p/pyEGA3.md +++ b/docs/version-specific/supported-software/p/pyEGA3.md @@ -8,13 +8,10 @@ A basic Python-based EGA download client *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0.33`` | ``-Python-3.7.2`` | ``GCCcore/8.2.0`` -``3.4.0`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``3.4.0`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` -``4.0.0`` | | ``GCCcore/11.2.0`` -``5.0.2`` | | ``GCCcore/12.3.0`` +version | toolchain +--------|---------- +``4.0.0`` | ``GCCcore/11.2.0`` +``5.0.2`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pyFAI.md b/docs/version-specific/supported-software/p/pyFAI.md index 72d41c9373..d73cf7b5b8 100644 --- a/docs/version-specific/supported-software/p/pyFAI.md +++ b/docs/version-specific/supported-software/p/pyFAI.md @@ -8,13 +8,11 @@ Python implementation of fast azimuthal integration. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.19.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.19.0`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``0.20.0`` | | ``foss/2020b`` -``0.20.0`` | | ``fosscuda/2020b`` -``0.21.3`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``0.20.0`` | ``foss/2020b`` +``0.20.0`` | ``fosscuda/2020b`` +``0.21.3`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pyFFTW.md b/docs/version-specific/supported-software/p/pyFFTW.md index cd5bb4f403..f159a50af5 100644 --- a/docs/version-specific/supported-software/p/pyFFTW.md +++ b/docs/version-specific/supported-software/p/pyFFTW.md @@ -8,13 +8,11 @@ A pythonic wrapper around FFTW, the FFT library, presenting a unified interface *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.11.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.11.1`` | | ``intel/2019a`` -``0.12.0`` | | ``foss/2020b`` -``0.12.0`` | | ``fosscuda/2020b`` -``0.13.1`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``0.12.0`` | ``foss/2020b`` +``0.12.0`` | ``fosscuda/2020b`` +``0.13.1`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pyGIMLi.md b/docs/version-specific/supported-software/p/pyGIMLi.md deleted file mode 100644 index 79abe522ac..0000000000 --- a/docs/version-specific/supported-software/p/pyGIMLi.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pyGIMLi - -pyGIMLi is an open-source multi-method library for solving inverse and forward tasks related to geophysical problems. Written in C++ and Python, it offers both efficiency and flexibility allowing you to quickly build your own robust inversion applications for the geophysical problem at hand. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20160803`` | ``-Python-2.7.11`` | ``foss/2016a`` -``20160803`` | ``-Python-3.5.1`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pySCENIC.md b/docs/version-specific/supported-software/p/pySCENIC.md index f3de0bb4d1..a969819748 100644 --- a/docs/version-specific/supported-software/p/pySCENIC.md +++ b/docs/version-specific/supported-software/p/pySCENIC.md @@ -8,12 +8,10 @@ pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Singl *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.3`` | ``-Python-3.8.2`` | ``foss/2020a`` -``0.10.3`` | ``-Python-3.8.2`` | ``intel/2020a`` -``0.12.1-20240311`` | | ``foss/2023a`` -``0.12.1`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``0.12.1-20240311`` | ``foss/2023a`` +``0.12.1`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pyScaf.md b/docs/version-specific/supported-software/p/pyScaf.md deleted file mode 100644 index 108fdb853c..0000000000 --- a/docs/version-specific/supported-software/p/pyScaf.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pyScaf - -pyScaf orders contigs from genome assemblies utilising several types of information - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.12a4`` | ``-Python-2.7.14`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pyWannier90.md b/docs/version-specific/supported-software/p/pyWannier90.md index e809609291..da3a09121c 100644 --- a/docs/version-specific/supported-software/p/pyWannier90.md +++ b/docs/version-specific/supported-software/p/pyWannier90.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``2021-12-07`` | ``foss/2021a`` ``2021-12-07`` | ``gomkl/2021a`` +``2024-01-28`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ANGEL.md b/docs/version-specific/supported-software/p/pyannote.audio.md similarity index 81% rename from docs/version-specific/supported-software/a/ANGEL.md rename to docs/version-specific/supported-software/p/pyannote.audio.md index 896bef3e9a..3e36ed3ecf 100644 --- a/docs/version-specific/supported-software/a/ANGEL.md +++ b/docs/version-specific/supported-software/p/pyannote.audio.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# ANGEL +# pyannote.audio -ANGEL: Robust Open Reading Frame prediction +pyannote is an open-source toolkit for speaker diarization. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``3.0`` | ``-Python-3.7.2`` | ``foss/2019a`` +``3.3.2`` | ``-CUDA-12.1.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pybedtools.md b/docs/version-specific/supported-software/p/pybedtools.md index afde30e850..ed5a25bfe7 100644 --- a/docs/version-specific/supported-software/p/pybedtools.md +++ b/docs/version-specific/supported-software/p/pybedtools.md @@ -10,12 +10,7 @@ pybedtools wraps and extends BEDTools and offers feature-level manipulations fro version | versionsuffix | toolchain --------|---------------|---------- -``0.7.10`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.7.10`` | ``-Python-2.7.14`` | ``intel/2017b`` -``0.7.10`` | ``-Python-2.7.14`` | ``intel/2018a`` -``0.8.0`` | | ``foss/2019a`` -``0.8.0`` | | ``intel/2019a`` -``0.8.1`` | | ``foss/2019b`` +``0.10.0`` | | ``foss/2023b`` ``0.8.2`` | ``-Python-2.7.18`` | ``GCC/10.2.0`` ``0.8.2`` | | ``GCC/10.2.0`` ``0.8.2`` | ``-Python-2.7.18`` | ``GCC/11.2.0`` diff --git a/docs/version-specific/supported-software/p/pybind11-stubgen.md b/docs/version-specific/supported-software/p/pybind11-stubgen.md index 46b182aa08..82c943ec3e 100644 --- a/docs/version-specific/supported-software/p/pybind11-stubgen.md +++ b/docs/version-specific/supported-software/p/pybind11-stubgen.md @@ -4,7 +4,7 @@ search: --- # pybind11-stubgen -Static analysis tools and IDE usually struggle to understand python binary extensions. pybind11-stubgen generates stubs for python extensions to make them less opaque. While the CLI tool includes tweaks to target modules compiled specifically with pybind11 but it should work well with modules built with other libraries. +Static analysis tools and IDE usually struggle to understand python binary extensions. pybind11-stubgen generates stubs for python extensions to make them less opaque. While the CLI tool includes tweaks to target modules compiled specifically with pybind11 but it should work well with modules built with other libraries. *homepage*: diff --git a/docs/version-specific/supported-software/p/pybind11.md b/docs/version-specific/supported-software/p/pybind11.md index 7c1886e07d..20f0e1612d 100644 --- a/docs/version-specific/supported-software/p/pybind11.md +++ b/docs/version-specific/supported-software/p/pybind11.md @@ -14,15 +14,13 @@ version | versionsuffix | toolchain ``2.11.1`` | | ``GCCcore/12.3.0`` ``2.11.1`` | | ``GCCcore/13.2.0`` ``2.12.0`` | | ``GCC/13.3.0`` -``2.2.4`` | ``-Python-3.6.4`` | ``foss/2018a`` -``2.2.4`` | ``-Python-3.6.6`` | ``intel/2018b`` -``2.4.3`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``2.4.3`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` +``2.13.6`` | | ``GCC/13.3.0`` ``2.6.0`` | | ``GCCcore/10.2.0`` ``2.6.2`` | | ``GCCcore/10.3.0`` ``2.7.1`` | ``-Python-2.7.18`` | ``GCCcore/11.2.0`` ``2.7.1`` | | ``GCCcore/11.2.0`` ``2.9.2`` | | ``GCCcore/11.3.0`` +``2.9.2`` | ``-Python-2.7.18`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pybind11_abseil.md b/docs/version-specific/supported-software/p/pybind11_abseil.md new file mode 100644 index 0000000000..ad0e32c4d4 --- /dev/null +++ b/docs/version-specific/supported-software/p/pybind11_abseil.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# pybind11_abseil + +Pybind11 bindings for the Abseil C++ Common Libraries + +*homepage*: + +version | toolchain +--------|---------- +``202402.0`` | ``GCC/13.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/pybinding.md b/docs/version-specific/supported-software/p/pybinding.md index 16a89a8d10..7e43cc9e64 100644 --- a/docs/version-specific/supported-software/p/pybinding.md +++ b/docs/version-specific/supported-software/p/pybinding.md @@ -4,7 +4,7 @@ search: --- # pybinding -Pybinding is a Python package for numerical tight-binding calculations in solid state physics. +Pybinding is a Python package for numerical tight-binding calculations in solid state physics. *homepage*: diff --git a/docs/version-specific/supported-software/p/pycma.md b/docs/version-specific/supported-software/p/pycma.md deleted file mode 100644 index 08be429280..0000000000 --- a/docs/version-specific/supported-software/p/pycma.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pycma - -A stochastic numerical optimization algorithm for difficult (non-convex, ill-conditioned, multi-modal, rugged, noisy) optimization problems in continuous search spaces, implemented in Python. - -*homepage*: - -version | toolchain ---------|---------- -``2.7.0`` | ``intel/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pycocotools.md b/docs/version-specific/supported-software/p/pycocotools.md index 5c9350fa05..4fbb0556b1 100644 --- a/docs/version-specific/supported-software/p/pycocotools.md +++ b/docs/version-specific/supported-software/p/pycocotools.md @@ -4,21 +4,15 @@ search: --- # pycocotools -Tools for working with the MSCOCO dataset +Official APIs for the MS-COCO dataset -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``2.0.0`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``2.0.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``2.0.1`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``2.0.2`` | ``-Python-3.8.2`` | ``foss/2020a`` -``2.0.2`` | ``-Python-3.8.2`` | ``fosscuda/2020a`` -``2.0.4`` | | ``foss/2021a`` -``2.0.6`` | | ``foss/2022a`` -``2.0.7`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``2.0.4`` | ``foss/2021a`` +``2.0.6`` | ``foss/2022a`` +``2.0.7`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pycodestyle.md b/docs/version-specific/supported-software/p/pycodestyle.md index 604c2ef596..8ff1740c61 100644 --- a/docs/version-specific/supported-software/p/pycodestyle.md +++ b/docs/version-specific/supported-software/p/pycodestyle.md @@ -8,11 +8,12 @@ pycodestyle is a tool to check your Python code against some of the style conven *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.11.1`` | | ``foss/2022a`` -``2.11.1`` | | ``foss/2023a`` -``2.5.0`` | ``-Python-3.6.4`` | ``intel/2018a`` +version | toolchain +--------|---------- +``2.11.1`` | ``foss/2022a`` +``2.11.1`` | ``foss/2022b`` +``2.11.1`` | ``foss/2023a`` +``2.11.1`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pydantic.md b/docs/version-specific/supported-software/p/pydantic.md index 1d69b7f816..6cb4dbaffa 100644 --- a/docs/version-specific/supported-software/p/pydantic.md +++ b/docs/version-specific/supported-software/p/pydantic.md @@ -8,16 +8,16 @@ Data validation and settings management using Python type hinting. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.10.13`` | | ``GCCcore/12.3.0`` -``1.10.2`` | | ``GCCcore/11.2.0`` -``1.10.4`` | | ``GCCcore/11.3.0`` -``1.6.1`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``2.5.3`` | | ``GCCcore/12.2.0`` -``2.5.3`` | | ``GCCcore/12.3.0`` -``2.6.4`` | | ``GCCcore/13.2.0`` -``2.7.4`` | | ``GCCcore/13.2.0`` +version | toolchain +--------|---------- +``1.10.13`` | ``GCCcore/12.3.0`` +``1.10.2`` | ``GCCcore/11.2.0`` +``1.10.4`` | ``GCCcore/11.3.0`` +``2.5.3`` | ``GCCcore/12.2.0`` +``2.5.3`` | ``GCCcore/12.3.0`` +``2.6.4`` | ``GCCcore/13.2.0`` +``2.7.4`` | ``GCCcore/13.2.0`` +``2.9.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pydicom.md b/docs/version-specific/supported-software/p/pydicom.md index 6da97f6df3..6bd191afcb 100644 --- a/docs/version-specific/supported-software/p/pydicom.md +++ b/docs/version-specific/supported-software/p/pydicom.md @@ -4,22 +4,19 @@ search: --- # pydicom -Read, modify and write DICOM files with python code +Pure python package for DICOM medical file reading and writing. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.9.9`` | ``-Python-2.7.11`` | ``intel/2016a`` -``1.2.2`` | | ``GCCcore/8.2.0`` -``1.4.2`` | | ``GCCcore/8.3.0`` -``2.1.2`` | | ``GCCcore/10.2.0`` -``2.1.2`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` -``2.2.2`` | | ``GCCcore/10.3.0`` -``2.2.2`` | | ``GCCcore/11.2.0`` -``2.3.0`` | | ``GCCcore/11.3.0`` -``2.4.4`` | | ``GCCcore/12.2.0`` -``2.4.4`` | | ``GCCcore/12.3.0`` +version | toolchain +--------|---------- +``2.1.2`` | ``GCCcore/10.2.0`` +``2.2.2`` | ``GCCcore/10.3.0`` +``2.2.2`` | ``GCCcore/11.2.0`` +``2.3.0`` | ``GCCcore/11.3.0`` +``2.4.4`` | ``GCCcore/12.2.0`` +``2.4.4`` | ``GCCcore/12.3.0`` +``3.0.1`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pydlpoly.md b/docs/version-specific/supported-software/p/pydlpoly.md deleted file mode 100644 index 244c19a7b2..0000000000 --- a/docs/version-specific/supported-software/p/pydlpoly.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pydlpoly - -Pydlpoly is a molecular dynamics simulation package which is a modified version of DL-POLY with a Python language interface. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20150225`` | ``-Python-2.7.12`` | ``intel/2016b`` -``20150225`` | ``-Python-2.7.13`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pydot.md b/docs/version-specific/supported-software/p/pydot.md index 42da7c7998..e9ed7fefac 100644 --- a/docs/version-specific/supported-software/p/pydot.md +++ b/docs/version-specific/supported-software/p/pydot.md @@ -10,14 +10,13 @@ Python interface to Graphviz's Dot language. version | toolchain --------|---------- -``1.4.1`` | ``GCCcore/9.3.0`` -``1.4.1`` | ``foss/2019b`` ``1.4.2`` | ``GCCcore/10.2.0`` ``1.4.2`` | ``GCCcore/10.3.0`` ``1.4.2`` | ``GCCcore/11.2.0`` ``1.4.2`` | ``GCCcore/11.3.0`` ``2.0.0`` | ``GCCcore/12.2.0`` ``2.0.0`` | ``GCCcore/12.3.0`` +``3.0.3`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pyenchant.md b/docs/version-specific/supported-software/p/pyenchant.md deleted file mode 100644 index 3eb8553ed8..0000000000 --- a/docs/version-specific/supported-software/p/pyenchant.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pyenchant - -PyEnchant is a spellchecking library for Python, based on the excellent Enchant library. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.6.8`` | ``-Python-2.7.13`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pyfaidx.md b/docs/version-specific/supported-software/p/pyfaidx.md index abae7cfd28..755fda4c7d 100644 --- a/docs/version-specific/supported-software/p/pyfaidx.md +++ b/docs/version-specific/supported-software/p/pyfaidx.md @@ -8,16 +8,16 @@ pyfaidx: efficient pythonic random access to fasta subsequences *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.5.9.5`` | | ``GCCcore/10.2.0`` -``0.5.9.5`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``0.6.3.1`` | | ``GCCcore/10.3.0`` -``0.7.0`` | | ``GCCcore/11.2.0`` -``0.7.1`` | | ``GCCcore/11.3.0`` -``0.7.2.1`` | | ``GCCcore/12.2.0`` -``0.8.1.1`` | | ``GCCcore/12.3.0`` -``0.8.1.1`` | | ``GCCcore/13.2.0`` +version | toolchain +--------|---------- +``0.5.9.5`` | ``GCCcore/10.2.0`` +``0.6.3.1`` | ``GCCcore/10.3.0`` +``0.7.0`` | ``GCCcore/11.2.0`` +``0.7.1`` | ``GCCcore/11.3.0`` +``0.7.2.1`` | ``GCCcore/12.2.0`` +``0.8.1.1`` | ``GCCcore/12.3.0`` +``0.8.1.1`` | ``GCCcore/13.2.0`` +``0.8.1.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pyfits.md b/docs/version-specific/supported-software/p/pyfits.md deleted file mode 100644 index 4b956e645b..0000000000 --- a/docs/version-specific/supported-software/p/pyfits.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pyfits - -The PyFITS module is a Python library providing access to FITS (Flexible Image Transport System) - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.5`` | ``-Python-2.7.15`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pygccxml.md b/docs/version-specific/supported-software/p/pygccxml.md deleted file mode 100644 index 632191a93a..0000000000 --- a/docs/version-specific/supported-software/p/pygccxml.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pygccxml - -Python package for easy C++ declarations navigation. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20160706`` | ``-Python-2.7.11`` | ``foss/2016a`` -``20160706`` | ``-Python-3.5.1`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pygraphviz.md b/docs/version-specific/supported-software/p/pygraphviz.md index 67d433eb14..f0e5922a7a 100644 --- a/docs/version-specific/supported-software/p/pygraphviz.md +++ b/docs/version-specific/supported-software/p/pygraphviz.md @@ -4,7 +4,7 @@ search: --- # pygraphviz -PyGraphviz is a Python interface to the Graphviz graph layout and visualization package. With PyGraphviz you can create, edit, read, write, and draw graphs using Python to access the Graphviz graph data structure and layout algorithms. +PyGraphviz is a Python interface to the Graphviz graph layout and visualization package. With PyGraphviz you can create, edit, read, write, and draw graphs using Python to access the Graphviz graph data structure and layout algorithms. *homepage*: @@ -12,7 +12,6 @@ version | toolchain --------|---------- ``1.10`` | ``GCCcore/11.3.0`` ``1.11`` | ``GCCcore/12.3.0`` -``1.5`` | ``foss/2019b`` ``1.7`` | ``foss/2020b`` ``1.7`` | ``foss/2021a`` diff --git a/docs/version-specific/supported-software/p/pygrib.md b/docs/version-specific/supported-software/p/pygrib.md deleted file mode 100644 index 3ddc158ccd..0000000000 --- a/docs/version-specific/supported-software/p/pygrib.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pygrib - -Python interface for reading and writing GRIB data - -*homepage*: - -version | toolchain ---------|---------- -``2.0.4`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pyhdf.md b/docs/version-specific/supported-software/p/pyhdf.md deleted file mode 100644 index eb2886fbed..0000000000 --- a/docs/version-specific/supported-software/p/pyhdf.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pyhdf - -Python wrapper around the NCSA HDF version 4 library - -*homepage*: - -version | toolchain ---------|---------- -``0.10.1`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pyiron.md b/docs/version-specific/supported-software/p/pyiron.md index 16f58e5b5b..f73cf2c9f1 100644 --- a/docs/version-specific/supported-software/p/pyiron.md +++ b/docs/version-specific/supported-software/p/pyiron.md @@ -8,11 +8,9 @@ An integrated development environment (IDE) for computational materials science. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.2.5`` | ``-Python-3.7.2`` | ``intel/2019a`` -``0.3.0`` | ``-Python-3.8.2`` | ``intel/2020a`` -``0.5.1`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``0.5.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pylift.md b/docs/version-specific/supported-software/p/pylift.md deleted file mode 100644 index 9c56adb2dc..0000000000 --- a/docs/version-specific/supported-software/p/pylift.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pylift - -pylift is an uplift library that provides, primarily: (1) Fast uplift modeling implementations and (2) Evaluation tools (UpliftEval class). - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1.5`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.1.5`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pymatgen-db.md b/docs/version-specific/supported-software/p/pymatgen-db.md deleted file mode 100644 index eebf802aa8..0000000000 --- a/docs/version-specific/supported-software/p/pymatgen-db.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pymatgen-db - -Pymatgen-db is a database add-on for the Python Materials Genomics (pymatgen) materials analysis library. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.6.5`` | ``-Python-2.7.13`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pymatgen.md b/docs/version-specific/supported-software/p/pymatgen.md index 0cc9baa0b6..7663473edc 100644 --- a/docs/version-specific/supported-software/p/pymatgen.md +++ b/docs/version-specific/supported-software/p/pymatgen.md @@ -8,17 +8,12 @@ Python Materials Genomics is a robust materials analysis code that defines core *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2017.10.16`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2017.10.16`` | ``-Python-3.6.3`` | ``intel/2017b`` -``2022.0.4`` | | ``foss/2020b`` -``2023.12.18`` | | ``foss/2023a`` -``2023.3.10`` | | ``foss/2022a`` -``3.5.0`` | ``-Python-2.7.11`` | ``intel/2016.02-GCC-4.9`` -``4.1.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``4.3.2`` | ``-Python-2.7.12`` | ``intel/2016b`` -``4.7.3`` | ``-Python-2.7.13`` | ``intel/2017a`` +version | toolchain +--------|---------- +``2022.0.4`` | ``foss/2020b`` +``2023.12.18`` | ``foss/2023a`` +``2023.3.10`` | ``foss/2022a`` +``2024.5.1`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pymbar.md b/docs/version-specific/supported-software/p/pymbar.md deleted file mode 100644 index e2a3727b6e..0000000000 --- a/docs/version-specific/supported-software/p/pymbar.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pymbar - -The pymbar package contains the pymbar suite of tools for the analysis of simulated and experimental data with the multistate Bennett acceptance ratio (MBAR) estimator. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0.3`` | ``-Python-3.6.3`` | ``intel/2017b`` -``3.0.3`` | ``-Python-3.8.2`` | ``intel/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pymca.md b/docs/version-specific/supported-software/p/pymca.md index 51a64e1be9..905b053e5d 100644 --- a/docs/version-specific/supported-software/p/pymca.md +++ b/docs/version-specific/supported-software/p/pymca.md @@ -8,13 +8,11 @@ The PyMca X-Ray Fluorescence Toolkit, including PyMca5 and fisx. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``5.6.3`` | ``-Python-3.7.4`` | ``foss/2019b`` -``5.6.3`` | | ``foss/2020b`` -``5.6.3`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``5.6.3`` | | ``fosscuda/2020b`` -``5.7.6`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``5.6.3`` | ``foss/2020b`` +``5.6.3`` | ``fosscuda/2020b`` +``5.7.6`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pymemcache.md b/docs/version-specific/supported-software/p/pymemcache.md deleted file mode 100644 index ae2ff5f2d7..0000000000 --- a/docs/version-specific/supported-software/p/pymemcache.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pymemcache - -A comprehensive, fast, pure-Python memcached client. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1.1`` | ``-Python-3.6.4`` | ``foss/2018a`` -``2.1.1`` | ``-Python-3.6.4`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pyobjcryst.md b/docs/version-specific/supported-software/p/pyobjcryst.md index 7f3fc405b1..ebfa39d198 100644 --- a/docs/version-specific/supported-software/p/pyobjcryst.md +++ b/docs/version-specific/supported-software/p/pyobjcryst.md @@ -8,10 +8,9 @@ Python bindings to ObjCryst++, the Object-Oriented Crystallographic Library. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1.0.post2`` | ``-Python-3.8.2`` | ``intel/2020a`` -``2.2.1`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``2.2.1`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pyparsing.md b/docs/version-specific/supported-software/p/pyparsing.md index b656f6c433..86b4b7f95c 100644 --- a/docs/version-specific/supported-software/p/pyparsing.md +++ b/docs/version-specific/supported-software/p/pyparsing.md @@ -8,11 +8,10 @@ The pyparsing module is an alternative approach to creating and executing simple *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.4.6`` | ``-Python-2.7.16`` | ``GCCcore/8.3.0`` -``3.0.9`` | | ``GCCcore/11.3.0`` -``3.1.1`` | | ``GCCcore/12.3.0`` +version | toolchain +--------|---------- +``3.0.9`` | ``GCCcore/11.3.0`` +``3.1.1`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pyplusplus.md b/docs/version-specific/supported-software/p/pyplusplus.md deleted file mode 100644 index 1f38452084..0000000000 --- a/docs/version-specific/supported-software/p/pyplusplus.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pyplusplus - -Py++ is a code generator for Boost.Python that simplifies writing Python bindings of a C/C++ library The tool is implemented as a Python module which is controlled by a user script. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20160707`` | ``-Python-2.7.11`` | ``foss/2016a`` -``20160707`` | ``-Python-3.5.1`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pypmt.md b/docs/version-specific/supported-software/p/pypmt.md index 9f291a53e1..067a63ff7a 100644 --- a/docs/version-specific/supported-software/p/pypmt.md +++ b/docs/version-specific/supported-software/p/pypmt.md @@ -4,7 +4,7 @@ search: --- # pypmt -PMT is a high-level software library capable of collecting power consumption measurements on various hardware. +PMT is a high-level software library capable of collecting power consumption measurements on various hardware. *homepage*: diff --git a/docs/version-specific/supported-software/p/pyproj.md b/docs/version-specific/supported-software/p/pyproj.md index 27d1299aed..fcf3bc0e66 100644 --- a/docs/version-specific/supported-software/p/pyproj.md +++ b/docs/version-specific/supported-software/p/pyproj.md @@ -8,18 +8,16 @@ Python interface to PROJ4 library for cartographic transformations *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1.3`` | | ``GCCcore/8.2.0`` -``2.4.2`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``2.6.1.post1`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` -``3.0.1`` | | ``GCCcore/10.2.0`` -``3.1.0`` | | ``GCCcore/10.3.0`` -``3.3.1`` | | ``GCCcore/11.2.0`` -``3.3.1`` | | ``GCCcore/11.3.0`` -``3.4.0`` | | ``GCCcore/11.3.0`` -``3.5.0`` | | ``GCCcore/12.2.0`` -``3.6.0`` | | ``GCCcore/12.3.0`` +version | toolchain +--------|---------- +``3.0.1`` | ``GCCcore/10.2.0`` +``3.1.0`` | ``GCCcore/10.3.0`` +``3.3.1`` | ``GCCcore/11.2.0`` +``3.3.1`` | ``GCCcore/11.3.0`` +``3.4.0`` | ``GCCcore/11.3.0`` +``3.5.0`` | ``GCCcore/12.2.0`` +``3.6.0`` | ``GCCcore/12.3.0`` +``3.7.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pyqstem.md b/docs/version-specific/supported-software/p/pyqstem.md index 7407e6884e..abb529255e 100644 --- a/docs/version-specific/supported-software/p/pyqstem.md +++ b/docs/version-specific/supported-software/p/pyqstem.md @@ -10,10 +10,8 @@ QSTEM is a program for quantitative image simulation in electron microscopy, inc version | versionsuffix | toolchain --------|---------------|---------- -``1.0.3`` | ``-Python-3.6.6`` | ``foss/2018b`` ``1.0.3`` | ``-ASE-3.22.0`` | ``foss/2020b`` ``1.0.3`` | ``-ASE-3.22.0`` | ``fosscuda/2020b`` -``1.0.3`` | ``-Python-3.6.6`` | ``intel/2018b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pyradiomics.md b/docs/version-specific/supported-software/p/pyradiomics.md index 802c7d5689..d66373c236 100644 --- a/docs/version-specific/supported-software/p/pyradiomics.md +++ b/docs/version-specific/supported-software/p/pyradiomics.md @@ -8,10 +8,9 @@ Open-source python package for the extraction of Radiomics features from 2D and *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``3.0.1`` | | ``foss/2021a`` +version | toolchain +--------|---------- +``3.0.1`` | ``foss/2021a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pyringe.md b/docs/version-specific/supported-software/p/pyringe.md deleted file mode 100644 index 1854935b2d..0000000000 --- a/docs/version-specific/supported-software/p/pyringe.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pyringe - -Debugger capable of attaching to and injecting code into python processes. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.2`` | ``-Python-2.7.11`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pyshp.md b/docs/version-specific/supported-software/p/pyshp.md index 13e72542b8..d7ea2d2431 100644 --- a/docs/version-specific/supported-software/p/pyshp.md +++ b/docs/version-specific/supported-software/p/pyshp.md @@ -8,10 +8,9 @@ Pure Python read/write support for ESRI Shapefile format *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.12`` | ``-Python-3.6.2`` | ``foss/2017b`` -``2.1.3`` | | ``GCCcore/10.2.0`` +version | toolchain +--------|---------- +``2.1.3`` | ``GCCcore/10.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pysndfx.md b/docs/version-specific/supported-software/p/pysndfx.md deleted file mode 100644 index 6a7321dcfe..0000000000 --- a/docs/version-specific/supported-software/p/pysndfx.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pysndfx - -A lightweight Python wrapper for SoX - Sound eXchange. Supported effects range from EQ and compression to phasers, reverb and pitch shifters. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.3.6`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pyspoa.md b/docs/version-specific/supported-software/p/pyspoa.md index 3d436cad8c..0ea429e8af 100644 --- a/docs/version-specific/supported-software/p/pyspoa.md +++ b/docs/version-specific/supported-software/p/pyspoa.md @@ -8,16 +8,15 @@ Python bindings to spoa. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.0.4`` | ``-Python-3.7.4`` | ``GCC/8.3.0`` -``0.0.8`` | | ``GCC/10.2.0`` -``0.0.8`` | | ``GCC/10.3.0`` -``0.0.8`` | | ``GCC/11.2.0`` -``0.0.9`` | | ``GCC/11.3.0`` -``0.0.9`` | | ``GCC/12.2.0`` -``0.2.1`` | | ``GCC/12.3.0`` -``0.2.1`` | | ``GCC/13.2.0`` +version | toolchain +--------|---------- +``0.0.8`` | ``GCC/10.2.0`` +``0.0.8`` | ``GCC/10.3.0`` +``0.0.8`` | ``GCC/11.2.0`` +``0.0.9`` | ``GCC/11.3.0`` +``0.0.9`` | ``GCC/12.2.0`` +``0.2.1`` | ``GCC/12.3.0`` +``0.2.1`` | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pysqlite.md b/docs/version-specific/supported-software/p/pysqlite.md deleted file mode 100644 index d1ae0ebd33..0000000000 --- a/docs/version-specific/supported-software/p/pysqlite.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pysqlite - -pysqlite is an interface to the SQLite 3.x embedded relational database engine. It is almost fully compliant with the Python database API version 2.0 also exposes the unique features of SQLite. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.8.2`` | ``-Python-2.7.11`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pystran.md b/docs/version-specific/supported-software/p/pystran.md deleted file mode 100644 index b12bb76f1b..0000000000 --- a/docs/version-specific/supported-software/p/pystran.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pystran - -Toolset of dynamical model STRucture ANalysis algorithms - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2017.04.20`` | ``-Python-2.7.14`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pytest-xdist.md b/docs/version-specific/supported-software/p/pytest-xdist.md index b5f0206631..fb021d4970 100644 --- a/docs/version-specific/supported-software/p/pytest-xdist.md +++ b/docs/version-specific/supported-software/p/pytest-xdist.md @@ -16,6 +16,7 @@ version | toolchain ``2.5.0`` | ``GCCcore/11.2.0`` ``2.5.0`` | ``GCCcore/11.3.0`` ``3.3.1`` | ``GCCcore/12.3.0`` +``3.6.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pytest.md b/docs/version-specific/supported-software/p/pytest.md index 9dece5f482..5221389e6c 100644 --- a/docs/version-specific/supported-software/p/pytest.md +++ b/docs/version-specific/supported-software/p/pytest.md @@ -10,27 +10,11 @@ pytest: simple powerful testing with Python version | versionsuffix | toolchain --------|---------------|---------- -``3.0.1`` | ``-Python-2.7.11`` | ``foss/2016a`` -``3.0.1`` | ``-Python-3.5.1`` | ``foss/2016a`` -``3.8.0`` | ``-Python-3.6.4`` | ``foss/2018a`` -``3.8.0`` | ``-Python-3.6.4`` | ``intel/2018a`` -``3.8.2`` | ``-Python-2.7.14`` | ``foss/2017b`` -``3.8.2`` | ``-Python-3.6.3`` | ``foss/2017b`` -``3.8.2`` | ``-Python-3.6.6`` | ``foss/2018b`` -``3.8.2`` | ``-Python-2.7.14`` | ``intel/2017b`` -``3.8.2`` | ``-Python-3.6.3`` | ``intel/2017b`` -``3.8.2`` | ``-Python-2.7.15`` | ``intel/2018b`` -``3.8.2`` | ``-Python-3.6.6`` | ``intel/2018b`` -``4.3.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``4.3.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``4.4.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``4.4.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``4.4.0`` | ``-Python-2.7.15`` | ``intel/2018b`` -``4.4.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``6.0.1`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` +``4.6.11`` | ``-Python-2.7.18`` | ``GCCcore/12.3.0`` ``7.1.3`` | | ``GCCcore/11.2.0`` ``7.2.2`` | | ``GCCcore/11.2.0`` ``7.4.2`` | | ``GCCcore/12.3.0`` +``8.3.3`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/python-Levenshtein.md b/docs/version-specific/supported-software/p/python-Levenshtein.md index 97a4c8dcff..ef45db6523 100644 --- a/docs/version-specific/supported-software/p/python-Levenshtein.md +++ b/docs/version-specific/supported-software/p/python-Levenshtein.md @@ -8,11 +8,9 @@ Python extension for computing string edit distances and similarities. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.12.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.12.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.12.1`` | | ``foss/2020b`` +version | toolchain +--------|---------- +``0.12.1`` | ``foss/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/python-hl7.md b/docs/version-specific/supported-software/p/python-hl7.md deleted file mode 100644 index 027e646f76..0000000000 --- a/docs/version-specific/supported-software/p/python-hl7.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# python-hl7 - -A simple library for parsing messages of Health Level 7 (HL7) version 2.x into Python objects. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.3.4`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/python-igraph.md b/docs/version-specific/supported-software/p/python-igraph.md index e7b094449a..fa95465217 100644 --- a/docs/version-specific/supported-software/p/python-igraph.md +++ b/docs/version-specific/supported-software/p/python-igraph.md @@ -8,19 +8,16 @@ Python interface to the igraph high performance graph library, primarily aimed a *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.3`` | | ``foss/2022a`` -``0.10.6`` | | ``foss/2022b`` -``0.11.4`` | | ``foss/2023a`` -``0.7.1.post6`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.7.1.post6`` | ``-Python-2.7.14`` | ``intel/2017b`` -``0.8.0`` | | ``foss/2019b`` -``0.8.0`` | | ``foss/2020a`` -``0.9.0`` | | ``foss/2020b`` -``0.9.0`` | | ``fosscuda/2020b`` -``0.9.6`` | | ``foss/2021a`` -``0.9.8`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``0.10.3`` | ``foss/2022a`` +``0.10.6`` | ``foss/2022b`` +``0.11.4`` | ``foss/2023a`` +``0.11.8`` | ``foss/2023b`` +``0.9.0`` | ``foss/2020b`` +``0.9.0`` | ``fosscuda/2020b`` +``0.9.6`` | ``foss/2021a`` +``0.9.8`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/python-lsp-server.md b/docs/version-specific/supported-software/p/python-lsp-server.md new file mode 100644 index 0000000000..d11b731224 --- /dev/null +++ b/docs/version-specific/supported-software/p/python-lsp-server.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# python-lsp-server + +Python Language Server for the Language Server Protocol A Python 3.8+ implementation of the Language Server Protocol. + +*homepage*: + +version | toolchain +--------|---------- +``1.12.0`` | ``GCCcore/13.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/python-parasail.md b/docs/version-specific/supported-software/p/python-parasail.md index 23ea9104cf..55cc0d157a 100644 --- a/docs/version-specific/supported-software/p/python-parasail.md +++ b/docs/version-specific/supported-software/p/python-parasail.md @@ -4,27 +4,20 @@ search: --- # python-parasail -This package contains Python bindings for parasail. +Python Bindings for the Parasail C Library -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.12`` | ``-Python-2.7.14`` | ``intel/2018a`` -``1.1.16`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.2`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.2`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``1.2`` | ``-Python-3.7.4`` | ``intel/2019b`` -``1.2.2`` | ``-Python-3.8.2`` | ``intel/2020a`` -``1.2.3`` | ``-Python-3.8.2`` | ``foss/2020a`` -``1.2.4`` | | ``foss/2020b`` -``1.2.4`` | | ``foss/2021a`` -``1.2.4`` | | ``foss/2021b`` -``1.2.4`` | | ``fosscuda/2020b`` -``1.3.3`` | | ``foss/2022a`` -``1.3.4`` | | ``foss/2022b`` -``1.3.4`` | | ``foss/2023a`` -``1.3.4`` | | ``foss/2023b`` +version | toolchain +--------|---------- +``1.2.4`` | ``foss/2020b`` +``1.2.4`` | ``foss/2021a`` +``1.2.4`` | ``foss/2021b`` +``1.2.4`` | ``fosscuda/2020b`` +``1.3.3`` | ``foss/2022a`` +``1.3.4`` | ``foss/2022b`` +``1.3.4`` | ``foss/2023a`` +``1.3.4`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/python-slugify.md b/docs/version-specific/supported-software/p/python-slugify.md new file mode 100644 index 0000000000..dd8335d51a --- /dev/null +++ b/docs/version-specific/supported-software/p/python-slugify.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# python-slugify + +Best attempt to create slugs from unicode strings while keeping it DRY. + +*homepage*: + +version | toolchain +--------|---------- +``8.0.4`` | ``GCCcore/13.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/python-weka-wrapper3.md b/docs/version-specific/supported-software/p/python-weka-wrapper3.md deleted file mode 100644 index c12c131af8..0000000000 --- a/docs/version-specific/supported-software/p/python-weka-wrapper3.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# python-weka-wrapper3 - -Python3 wrapper for the Weka Machine Learning Workbench - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1.11`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/liknorm.md b/docs/version-specific/supported-software/p/python-zlib-ng.md similarity index 64% rename from docs/version-specific/supported-software/l/liknorm.md rename to docs/version-specific/supported-software/p/python-zlib-ng.md index 2da3cc1626..3dd69756ab 100644 --- a/docs/version-specific/supported-software/l/liknorm.md +++ b/docs/version-specific/supported-software/p/python-zlib-ng.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# liknorm +# python-zlib-ng -Moments of the product of an exponential-family likelihood with a Normal distribution. +Faster zlib and gzip compatible compression and decompression by providing Python bindings for the zlib-ng library. python-zlib-ng provides the bindings by offering three modules: zlib_ng, gzip_ng, gzip_ng_threaded. zlib_ng and gzip_ng are almost fully compatible with zlib and gzip from the Python standard library. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.5.2`` | ``GCCcore/7.3.0`` +``0.5.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pythran.md b/docs/version-specific/supported-software/p/pythran.md deleted file mode 100644 index c150351dea..0000000000 --- a/docs/version-specific/supported-software/p/pythran.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pythran - -Pythran is an ahead of time compiler for a subset of the Python language, with a focus on scientific computing. It takes a Python module annotated with a few interface description and turns it into a native Python module with the same interface, but (hopefully) faster. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.9.4.post1`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pytorch-3dunet.md b/docs/version-specific/supported-software/p/pytorch-3dunet.md index dd1e80d1ad..026f243379 100644 --- a/docs/version-specific/supported-software/p/pytorch-3dunet.md +++ b/docs/version-specific/supported-software/p/pytorch-3dunet.md @@ -4,7 +4,7 @@ search: --- # pytorch-3dunet -PyTorch implementation of 3D U-Net and its variants: - UNet3D: Standard 3D U-Net based on 3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation - ResidualUNet3D: Residual 3D U-Net based on Superhuman Accuracy on the SNEMI3D Connectomics Challenge - ResidualUNetSE3D: Similar to ResidualUNet3D with the addition of Squeeze and Excitation blocks based on Deep Learning Semantic Segmentation for High- Resolution Medical Volumes. Original squeeze and excite paper: Squeeze-and- Excitation Networks The code allows for training the U-Net for both: semantic segmentation (binary and multi-class) and regression problems (e.g. de-noising, learning deconvolutions). +PyTorch implementation of 3D U-Net and its variants: - UNet3D: Standard 3D U-Net based on 3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation - ResidualUNet3D: Residual 3D U-Net based on Superhuman Accuracy on the SNEMI3D Connectomics Challenge - ResidualUNetSE3D: Similar to ResidualUNet3D with the addition of Squeeze and Excitation blocks based on Deep Learning Semantic Segmentation for High- Resolution Medical Volumes. Original squeeze and excite paper: Squeeze-and- Excitation Networks The code allows for training the U-Net for both: semantic segmentation (binary and multi-class) and regression problems (e.g. de-noising, learning deconvolutions). *homepage*: diff --git a/docs/version-specific/supported-software/a/AMD-RNG.md b/docs/version-specific/supported-software/p/pyvips.md similarity index 75% rename from docs/version-specific/supported-software/a/AMD-RNG.md rename to docs/version-specific/supported-software/p/pyvips.md index 95c0f4c1aa..8e679020aa 100644 --- a/docs/version-specific/supported-software/a/AMD-RNG.md +++ b/docs/version-specific/supported-software/p/pyvips.md @@ -2,16 +2,15 @@ search: boost: 0.5 --- -# AMD-RNG +# pyvips -AMD Random Number Generator Library is a pseudorandom number generator library. +This module wraps the libvips image processing library. libvips is a demand-driven, horizontally threaded image processing library. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.0`` | ``GCC/7.3.0-2.30`` -``2.2-4`` | ``GCC/9.3.0`` +``2.2.3`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/Q6.md b/docs/version-specific/supported-software/q/Q6.md deleted file mode 100644 index bc11f05195..0000000000 --- a/docs/version-specific/supported-software/q/Q6.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Q6 - -EVB, FEP and LIE simulator. - -*homepage*: - -version | toolchain ---------|---------- -``20180205`` | ``gompi/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/q/QCA.md b/docs/version-specific/supported-software/q/QCA.md index 74b3a3bff8..fe858b15c3 100644 --- a/docs/version-specific/supported-software/q/QCA.md +++ b/docs/version-specific/supported-software/q/QCA.md @@ -4,18 +4,14 @@ search: --- # QCA -Taking a hint from the similarly-named Java Cryptography Architecture, QCA aims to provide a straightforward and cross-platform crypto API, using Qt datatypes and conventions. QCA separates the API from the implementation, using plugins known as Providers. The advantage of this model is to allow applications to avoid linking to or explicitly depending on any particular cryptographic library. This allows one to easily change or upgrade crypto implementations without even needing to recompile the application! QCA should work everywhere Qt does, including Windows/Unix/MacOSX. +Taking a hint from the similarly-named Java Cryptography Architecture, QCA aims to provide a straightforward and cross-platform crypto API, using Qt datatypes and conventions. QCA separates the API from the implementation, using plugins known as Providers. The advantage of this model is to allow applications to avoid linking to or explicitly depending on any particular cryptographic library. This allows one to easily change or upgrade crypto implementations without even needing to recompile the application! QCA should work everywhere Qt does, including Windows/Unix/MacOSX. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.1.0`` | ``foss/2016a`` -``2.1.0`` | ``intel/2016b`` -``2.1.3`` | ``GCCcore/8.2.0`` -``2.1.3`` | ``foss/2016b`` -``2.1.3`` | ``intel/2016b`` ``2.3.5`` | ``GCCcore/11.2.0`` +``2.3.9`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/QCG-PilotJob.md b/docs/version-specific/supported-software/q/QCG-PilotJob.md index a220d1efbb..e4424ae176 100644 --- a/docs/version-specific/supported-software/q/QCG-PilotJob.md +++ b/docs/version-specific/supported-software/q/QCG-PilotJob.md @@ -14,6 +14,7 @@ version | toolchain ``0.13.1`` | ``foss/2022a`` ``0.13.1`` | ``gfbf/2022b`` ``0.13.1`` | ``gfbf/2023b`` +``0.14.1`` | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/QDD.md b/docs/version-specific/supported-software/q/QDD.md deleted file mode 100644 index 81f8b2b4da..0000000000 --- a/docs/version-specific/supported-software/q/QDD.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# QDD - -A user-friendly program to select microsatellite markers and design primers from large sequencing projects. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.1.2`` | ``-Perl-5.28.0`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/q/QEMU.md b/docs/version-specific/supported-software/q/QEMU.md deleted file mode 100644 index fc64a86e40..0000000000 --- a/docs/version-specific/supported-software/q/QEMU.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# QEMU - -QEMU is a generic and open source machine emulator and virtualizer. - -*homepage*: - -version | toolchain ---------|---------- -``2.10.1`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/q/QGIS.md b/docs/version-specific/supported-software/q/QGIS.md index 4b01bd99a2..ecfcef9e0b 100644 --- a/docs/version-specific/supported-software/q/QGIS.md +++ b/docs/version-specific/supported-software/q/QGIS.md @@ -8,12 +8,10 @@ QGIS is a user friendly Open Source Geographic Information System (GIS) *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.14.12`` | ``-Python-2.7.12`` | ``intel/2016b`` -``2.18.4`` | ``-Python-2.7.12`` | ``foss/2016b`` -``3.28.1`` | | ``foss/2021b`` -``3.4.12`` | ``-Python-3.7.2`` | ``foss/2019a`` +version | toolchain +--------|---------- +``3.28.1`` | ``foss/2021b`` +``3.40.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/QIIME.md b/docs/version-specific/supported-software/q/QIIME.md deleted file mode 100644 index 20bee595e9..0000000000 --- a/docs/version-specific/supported-software/q/QIIME.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# QIIME - -QIIME is an open-source bioinformatics pipeline for performing microbiome analysis from raw DNA sequencing data. - -*homepage*: - -version | toolchain ---------|---------- -``1.9.1`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/q/QIIME2.md b/docs/version-specific/supported-software/q/QIIME2.md index d11524976a..5f03447d43 100644 --- a/docs/version-specific/supported-software/q/QIIME2.md +++ b/docs/version-specific/supported-software/q/QIIME2.md @@ -10,10 +10,6 @@ QIIME is an open-source bioinformatics pipeline for performing microbiome analys version | toolchain --------|---------- -``2017.10`` | ``system`` -``2018.2`` | ``system`` -``2019.4`` | ``system`` -``2019.7`` | ``system`` ``2020.11`` | ``system`` ``2020.8`` | ``system`` ``2021.8`` | ``system`` diff --git a/docs/version-specific/supported-software/q/QJson.md b/docs/version-specific/supported-software/q/QJson.md index 74df14c850..9776da130f 100644 --- a/docs/version-specific/supported-software/q/QJson.md +++ b/docs/version-specific/supported-software/q/QJson.md @@ -11,9 +11,6 @@ QJson is a Qt-based library that maps JSON data to QVariant objects and vice ver version | toolchain --------|---------- ``0.9.0`` | ``GCCcore/10.2.0`` -``0.9.0`` | ``GCCcore/8.2.0`` -``0.9.0`` | ``foss/2016b`` -``0.9.0`` | ``intel/2016b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/QML.md b/docs/version-specific/supported-software/q/QML.md deleted file mode 100644 index e4cbd9c2de..0000000000 --- a/docs/version-specific/supported-software/q/QML.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# QML - -QML is a Python2/3-compatible toolkit for representation learning of properties of molecules and solids. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.2.10`` | ``-Python-2.7.13`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/q/QScintilla.md b/docs/version-specific/supported-software/q/QScintilla.md index 8201a47d29..b3e3c6079d 100644 --- a/docs/version-specific/supported-software/q/QScintilla.md +++ b/docs/version-specific/supported-software/q/QScintilla.md @@ -8,14 +8,10 @@ QScintilla is a port to Qt of Neil Hodgson's Scintilla C++ editor control *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.10`` | ``-Python-2.7.12`` | ``foss/2016b`` -``2.10`` | ``-Python-2.7.12`` | ``intel/2016b`` -``2.11.2`` | ``-Python-3.7.2`` | ``GCCcore/8.2.0`` -``2.11.6`` | | ``GCCcore/11.2.0`` -``2.9.4`` | ``-Python-2.7.12`` | ``foss/2016b`` -``2.9.4`` | ``-Python-2.7.12`` | ``intel/2016b`` +version | toolchain +--------|---------- +``2.11.6`` | ``GCCcore/11.2.0`` +``2.14.1`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/QTLtools.md b/docs/version-specific/supported-software/q/QTLtools.md index 2dbf9fa3a3..b757690a23 100644 --- a/docs/version-specific/supported-software/q/QTLtools.md +++ b/docs/version-specific/supported-software/q/QTLtools.md @@ -4,13 +4,12 @@ search: --- # QTLtools -QTLtools is a tool set for molecular QTL discovery and analysis. It allows to go from the raw sequence data to collection of molecular Quantitative Trait Loci (QTLs) in few easy-to-perform steps. +QTLtools is a tool set for molecular QTL discovery and analysis. It allows to go from the raw sequence data to collection of molecular Quantitative Trait Loci (QTLs) in few easy-to-perform steps. *homepage*: version | toolchain --------|---------- -``1.1`` | ``intel/2016b`` ``1.3.1`` | ``foss/2020b`` diff --git a/docs/version-specific/supported-software/q/QUAST.md b/docs/version-specific/supported-software/q/QUAST.md index eceda83559..f206ac49db 100644 --- a/docs/version-specific/supported-software/q/QUAST.md +++ b/docs/version-specific/supported-software/q/QUAST.md @@ -4,23 +4,20 @@ search: --- # QUAST -QUAST evaluates genome assemblies by computing various metrics. It works both with and without reference genomes. The tool accepts multiple assemblies, thus is suitable for comparison. +QUAST evaluates genome assemblies by computing various metrics. It works both with and without reference genomes. The tool accepts multiple assemblies, thus is suitable for comparison. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``4.6.0`` | ``-Python-3.5.2`` | ``foss/2016b`` -``4.6.3`` | ``-Python-3.6.4`` | ``foss/2018a`` -``5.0.2`` | ``-Python-2.7.15`` | ``foss/2018b`` -``5.0.2`` | ``-Python-2.7.15`` | ``foss/2019a`` -``5.0.2`` | ``-Python-3.7.2`` | ``foss/2019a`` -``5.0.2`` | ``-Python-3.8.2`` | ``foss/2020a`` ``5.0.2`` | ``-Python-2.7.18`` | ``foss/2020b`` ``5.0.2`` | | ``foss/2020b`` ``5.0.2`` | | ``foss/2021a`` ``5.0.2`` | | ``foss/2021b`` ``5.2.0`` | | ``foss/2022a`` +``5.2.0`` | ``-Python-2.7.18`` | ``foss/2023a`` +``5.2.0`` | | ``gfbf/2023a`` +``5.2.0`` | | ``gfbf/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/Qhull.md b/docs/version-specific/supported-software/q/Qhull.md index 209388c48c..6f08d1b7bc 100644 --- a/docs/version-specific/supported-software/q/Qhull.md +++ b/docs/version-specific/supported-software/q/Qhull.md @@ -10,18 +10,6 @@ Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfsp version | toolchain --------|---------- -``2015.2`` | ``GCCcore/5.4.0`` -``2015.2`` | ``GCCcore/6.3.0`` -``2015.2`` | ``GCCcore/6.4.0`` -``2015.2`` | ``GCCcore/7.3.0`` -``2015.2`` | ``foss/2016a`` -``2015.2`` | ``foss/2016b`` -``2015.2`` | ``foss/2017b`` -``2015.2`` | ``intel/2016a`` -``2015.2`` | ``intel/2016b`` -``2015.2`` | ``intel/2017a`` -``2019.1`` | ``GCCcore/8.2.0`` -``2019.1`` | ``GCCcore/8.3.0`` ``2020.2`` | ``GCCcore/10.2.0`` ``2020.2`` | ``GCCcore/10.3.0`` ``2020.2`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/q/Qiskit.md b/docs/version-specific/supported-software/q/Qiskit.md index 9b79f58e2b..bcd61b2551 100644 --- a/docs/version-specific/supported-software/q/Qiskit.md +++ b/docs/version-specific/supported-software/q/Qiskit.md @@ -8,11 +8,9 @@ Qiskit is an open-source framework for working with noisy quantum computers at *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.11.1`` | ``-Python-3.7.2`` | ``foss/2019a`` -``0.12.0`` | ``-Python-3.7.2`` | ``foss/2019a`` -``0.31.0`` | | ``foss/2021a`` +version | toolchain +--------|---------- +``0.31.0`` | ``foss/2021a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/Qt.md b/docs/version-specific/supported-software/q/Qt.md deleted file mode 100644 index 5037d0438c..0000000000 --- a/docs/version-specific/supported-software/q/Qt.md +++ /dev/null @@ -1,34 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Qt - -Qt is a comprehensive cross-platform C++ application framework. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.3.8`` | | ``intel/2016a`` -``4.8.6`` | | ``system`` -``4.8.7`` | | ``GCCcore/8.2.0`` -``4.8.7`` | ``-GLib-2.48.0`` | ``foss/2016a`` -``4.8.7`` | | ``foss/2016a`` -``4.8.7`` | | ``foss/2016b`` -``4.8.7`` | | ``foss/2017a`` -``4.8.7`` | | ``foss/2017b`` -``4.8.7`` | | ``foss/2018a`` -``4.8.7`` | | ``foss/2018b`` -``4.8.7`` | | ``fosscuda/2018b`` -``4.8.7`` | | ``gimkl/2.11.5`` -``4.8.7`` | ``-GLib-2.48.0`` | ``intel/2016a`` -``4.8.7`` | | ``intel/2016a`` -``4.8.7`` | | ``intel/2016b`` -``4.8.7`` | | ``intel/2017a`` -``4.8.7`` | | ``intel/2017b`` -``4.8.7`` | | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/q/Qt5.md b/docs/version-specific/supported-software/q/Qt5.md index c6132dfa70..49f43c76cb 100644 --- a/docs/version-specific/supported-software/q/Qt5.md +++ b/docs/version-specific/supported-software/q/Qt5.md @@ -10,15 +10,6 @@ Qt is a comprehensive cross-platform C++ application framework. version | toolchain --------|---------- -``5.10.1`` | ``foss/2018a`` -``5.10.1`` | ``foss/2018b`` -``5.10.1`` | ``fosscuda/2018b`` -``5.10.1`` | ``intel/2018a`` -``5.10.1`` | ``intel/2018b`` -``5.11.2`` | ``foss/2018b`` -``5.12.3`` | ``GCCcore/8.2.0`` -``5.13.1`` | ``GCCcore/8.3.0`` -``5.14.1`` | ``GCCcore/9.3.0`` ``5.14.2`` | ``GCCcore/10.2.0`` ``5.15.10`` | ``GCCcore/12.3.0`` ``5.15.13`` | ``GCCcore/13.2.0`` @@ -26,20 +17,6 @@ version | toolchain ``5.15.2`` | ``GCCcore/11.2.0`` ``5.15.5`` | ``GCCcore/11.3.0`` ``5.15.7`` | ``GCCcore/12.2.0`` -``5.6.0`` | ``foss/2016a`` -``5.6.0`` | ``intel/2016a`` -``5.7.0`` | ``foss/2016a`` -``5.7.0`` | ``foss/2016b`` -``5.7.0`` | ``intel/2016a`` -``5.7.0`` | ``intel/2016b`` -``5.7.1`` | ``intel/2016b`` -``5.8.0`` | ``foss/2017a`` -``5.8.0`` | ``foss/2017b`` -``5.8.0`` | ``intel/2016b`` -``5.8.0`` | ``intel/2017a`` -``5.8.0`` | ``intel/2017b`` -``5.9.3`` | ``foss/2017b`` -``5.9.8`` | ``fosscuda/2018b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/Qt5Webkit.md b/docs/version-specific/supported-software/q/Qt5Webkit.md index 2e0f1b9e79..944c379e9c 100644 --- a/docs/version-specific/supported-software/q/Qt5Webkit.md +++ b/docs/version-specific/supported-software/q/Qt5Webkit.md @@ -10,10 +10,10 @@ Qt Port of WebKit. WebKit is an open source web browser engine. version | toolchain --------|---------- -``5.212.0-alpha3`` | ``GCCcore/8.2.0`` ``5.212.0-alpha4`` | ``GCCcore/10.2.0`` ``5.212.0-alpha4`` | ``GCCcore/11.2.0`` ``5.212.0-alpha4`` | ``GCCcore/11.3.0`` +``5.212.0-alpha4`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/Qt6.md b/docs/version-specific/supported-software/q/Qt6.md index 71f8186154..134bb981fd 100644 --- a/docs/version-specific/supported-software/q/Qt6.md +++ b/docs/version-specific/supported-software/q/Qt6.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``6.5.2`` | ``GCCcore/12.3.0`` ``6.6.3`` | ``GCCcore/13.2.0`` +``6.7.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/QtKeychain.md b/docs/version-specific/supported-software/q/QtKeychain.md index 0a78c3d2c5..b3e418ef56 100644 --- a/docs/version-specific/supported-software/q/QtKeychain.md +++ b/docs/version-specific/supported-software/q/QtKeychain.md @@ -11,8 +11,7 @@ Platform-independent Qt API for storing passwords securely. version | toolchain --------|---------- ``0.13.2`` | ``GCCcore/11.2.0`` -``0.9.1`` | ``GCCcore/8.2.0`` -``0.9.1`` | ``foss/2018b`` +``0.14.3`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/QtPy.md b/docs/version-specific/supported-software/q/QtPy.md index 2e26009241..e294f7a3f1 100644 --- a/docs/version-specific/supported-software/q/QtPy.md +++ b/docs/version-specific/supported-software/q/QtPy.md @@ -4,17 +4,17 @@ search: --- # QtPy -QtPy is a small abstraction layer that lets you write applications using a single API call to either PyQt or PySide. It provides support for PyQt5, PyQt4, PySide2 and PySide. +QtPy is a small abstraction layer that lets you write applications using a single API call to either PyQt or PySide. It provides support for PyQt5, PyQt4, PySide2 and PySide. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.9.0`` | | ``GCCcore/10.2.0`` -``1.9.0`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``2.2.1`` | | ``GCCcore/11.2.0`` -``2.3.0`` | | ``GCCcore/11.3.0`` -``2.4.1`` | | ``GCCcore/12.3.0`` +version | toolchain +--------|---------- +``1.9.0`` | ``GCCcore/10.2.0`` +``2.2.1`` | ``GCCcore/11.2.0`` +``2.3.0`` | ``GCCcore/11.3.0`` +``2.4.1`` | ``GCCcore/12.3.0`` +``2.4.1`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/Qtconsole.md b/docs/version-specific/supported-software/q/Qtconsole.md index c53cec46ce..970e920f04 100644 --- a/docs/version-specific/supported-software/q/Qtconsole.md +++ b/docs/version-specific/supported-software/q/Qtconsole.md @@ -4,18 +4,17 @@ search: --- # Qtconsole -A rich Qt-based console for working with Jupyter kernels, supporting rich media output, session export, and more. The Qtconsole is a very lightweight application that largely feels like a terminal, but provides a number of enhancements only possible in a GUI, such as inline figures, proper multiline editing with syntax highlighting, graphical calltips, and more. +A rich Qt-based console for working with Jupyter kernels, supporting rich media output, session export, and more. The Qtconsole is a very lightweight application that largely feels like a terminal, but provides a number of enhancements only possible in a GUI, such as inline figures, proper multiline editing with syntax highlighting, graphical calltips, and more. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.7.7`` | ``-Python-3.7.4`` | ``foss/2019b`` -``4.7.7`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``5.0.2`` | | ``GCCcore/10.2.0`` -``5.3.2`` | | ``GCCcore/11.2.0`` -``5.4.0`` | | ``GCCcore/11.3.0`` -``5.5.1`` | | ``GCCcore/12.3.0`` +version | toolchain +--------|---------- +``5.0.2`` | ``GCCcore/10.2.0`` +``5.3.2`` | ``GCCcore/11.2.0`` +``5.4.0`` | ``GCCcore/11.3.0`` +``5.5.1`` | ``GCCcore/12.3.0`` +``5.6.0`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/QuTiP.md b/docs/version-specific/supported-software/q/QuTiP.md deleted file mode 100644 index c69f99260c..0000000000 --- a/docs/version-specific/supported-software/q/QuTiP.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# QuTiP - -QuTiP is open-source software for simulating the dynamics of open quantum systems. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``4.1.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``4.3.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``4.3.1`` | ``-Python-3.6.6`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/q/QuaZIP.md b/docs/version-specific/supported-software/q/QuaZIP.md deleted file mode 100644 index 29e72d1519..0000000000 --- a/docs/version-specific/supported-software/q/QuaZIP.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# QuaZIP - -QuaZIP is the C++ wrapper for Gilles Vollant's ZIP/UNZIP package (AKA Minizip) using Trolltech's Qt library. - -*homepage*: - -version | toolchain ---------|---------- -``0.8.1`` | ``GCCcore/8.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/q/Qualimap.md b/docs/version-specific/supported-software/q/Qualimap.md index df96a2eb9c..427f465980 100644 --- a/docs/version-specific/supported-software/q/Qualimap.md +++ b/docs/version-specific/supported-software/q/Qualimap.md @@ -4,13 +4,12 @@ search: --- # Qualimap -Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts. +Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Interface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2.2.1`` | ``-R-3.6.0`` | ``foss/2019a`` ``2.2.1`` | ``-R-4.0.3`` | ``foss/2020b`` ``2.2.1`` | ``-R-4.1.2`` | ``foss/2021b`` ``2.3`` | ``-R-4.2.2`` | ``foss/2022b`` diff --git a/docs/version-specific/supported-software/q/Quandl.md b/docs/version-specific/supported-software/q/Quandl.md index df2545f802..d69a5f10a0 100644 --- a/docs/version-specific/supported-software/q/Quandl.md +++ b/docs/version-specific/supported-software/q/Quandl.md @@ -8,12 +8,10 @@ A Python library for Quandl’s RESTful API. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.4.2`` | ``-Python-3.6.4`` | ``intel/2018a`` -``3.4.8`` | | ``foss/2019a`` -``3.6.1`` | | ``foss/2020b`` -``3.6.1`` | | ``foss/2021a`` +version | toolchain +--------|---------- +``3.6.1`` | ``foss/2020b`` +``3.6.1`` | ``foss/2021a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/QuantumESPRESSO.md b/docs/version-specific/supported-software/q/QuantumESPRESSO.md index 6a61aa5b9b..3993be397f 100644 --- a/docs/version-specific/supported-software/q/QuantumESPRESSO.md +++ b/docs/version-specific/supported-software/q/QuantumESPRESSO.md @@ -8,45 +8,28 @@ Quantum ESPRESSO is an integrated suite of computer codes for electronic-struc *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``5.3.0`` | | ``intel/2016.02-GCC-4.9`` -``5.4.0`` | ``-hybrid`` | ``foss/2016b`` -``5.4.0`` | | ``intel/2016.02-GCC-4.9`` -``6.0`` | | ``intel/2016b`` -``6.1`` | | ``intel/2017a`` -``6.2`` | | ``intel/2017b`` -``6.2.1`` | | ``iomkl/2017b`` -``6.3`` | | ``foss/2018b`` -``6.3`` | | ``intel/2018b`` -``6.4.1`` | | ``intel/2019a`` -``6.5`` | | ``intel/2019a`` -``6.5`` | | ``intel/2019b`` -``6.6`` | | ``foss/2019b`` -``6.6`` | | ``foss/2020a`` -``6.6`` | | ``foss/2020b`` -``6.6`` | | ``intel/2019b`` -``6.6`` | | ``intel/2020a`` -``6.7`` | | ``foss/2019b`` -``6.7`` | | ``foss/2020b`` -``6.7`` | | ``foss/2021a`` -``6.7`` | | ``intel/2019b`` -``6.7`` | | ``intel/2021a`` -``6.7`` | | ``iomkl/2019b`` -``6.8`` | | ``foss/2021a`` -``6.8`` | | ``foss/2021b`` -``6.8`` | | ``intel/2021a`` -``7.0`` | | ``foss/2021b`` -``7.0`` | | ``intel/2021b`` -``7.1`` | | ``foss/2022a`` -``7.1`` | | ``intel/2022a`` -``7.2`` | | ``foss/2022b`` -``7.2`` | | ``foss/2023a`` -``7.2`` | | ``intel/2022b`` -``7.3`` | | ``foss/2023a`` -``7.3`` | | ``intel/2023a`` -``7.3.1`` | | ``foss/2023a`` -``7.3.1`` | | ``intel/2023a`` +version | toolchain +--------|---------- +``6.6`` | ``foss/2020b`` +``6.7`` | ``foss/2020b`` +``6.7`` | ``foss/2021a`` +``6.7`` | ``intel/2021a`` +``6.8`` | ``foss/2021a`` +``6.8`` | ``foss/2021b`` +``6.8`` | ``intel/2021a`` +``7.0`` | ``foss/2021b`` +``7.0`` | ``intel/2021b`` +``7.1`` | ``foss/2022a`` +``7.1`` | ``intel/2022a`` +``7.2`` | ``foss/2022b`` +``7.2`` | ``foss/2023a`` +``7.2`` | ``intel/2022b`` +``7.3`` | ``foss/2023a`` +``7.3`` | ``intel/2023a`` +``7.3.1`` | ``foss/2023a`` +``7.3.1`` | ``foss/2024a`` +``7.3.1`` | ``intel/2023a`` +``7.4`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/QuickFF.md b/docs/version-specific/supported-software/q/QuickFF.md index 7a82f50a0e..42e61179f2 100644 --- a/docs/version-specific/supported-software/q/QuickFF.md +++ b/docs/version-specific/supported-software/q/QuickFF.md @@ -6,16 +6,11 @@ search: QuickFF is a Python package developed at the Center for Molecular Modeling (CMM) to quickly derive accurate force fields from ab initio calculations. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1.4`` | ``-Python-2.7.12`` | ``intel/2016b`` -``2.2.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.2.4`` | ``-Python-3.7.2`` | ``intel/2019a`` -``2.2.4`` | ``-Python-3.8.2`` | ``intel/2020a`` -``2.2.7`` | | ``foss/2023a`` -``2.2.7`` | ``-Python-3.8.2`` | ``intel/2020a`` +version | toolchain +--------|---------- +``2.2.7`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/QuickPIC.md b/docs/version-specific/supported-software/q/QuickPIC.md index 055fb09fb5..81f1f45b44 100644 --- a/docs/version-specific/supported-software/q/QuickPIC.md +++ b/docs/version-specific/supported-software/q/QuickPIC.md @@ -4,7 +4,7 @@ search: --- # QuickPIC -QuickPIC is a 3D parallel (MPI & OpenMP Hybrid) Quasi-Static PIC code, which is developed based on the framework UPIC. QuickPIC can efficiently simulate plasma based accelerator problems. This is the UCLA Plasma Simulation Group's official open-source repository for QuickPIC. +QuickPIC is a 3D parallel (MPI & OpenMP Hybrid) Quasi-Static PIC code, which is developed based on the framework UPIC. QuickPIC can efficiently simulate plasma based accelerator problems. This is the UCLA Plasma Simulation Group's official open-source repository for QuickPIC. *homepage*: diff --git a/docs/version-specific/supported-software/q/QuickTree.md b/docs/version-specific/supported-software/q/QuickTree.md index eb48f73828..7233395b6f 100644 --- a/docs/version-specific/supported-software/q/QuickTree.md +++ b/docs/version-specific/supported-software/q/QuickTree.md @@ -11,6 +11,7 @@ QuickTree is an efficient implementation of the Neighbor-Joining algorithm (PMID version | toolchain --------|---------- ``2.5`` | ``GCC/12.2.0`` +``2.5`` | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/Quip.md b/docs/version-specific/supported-software/q/Quip.md deleted file mode 100644 index da1699c7b0..0000000000 --- a/docs/version-specific/supported-software/q/Quip.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Quip - -Quip compresses next-generation sequencing data with extreme prejudice. It supports input and output in the FASTQ and SAM/BAM formats, compressing large datasets to as little as 15% of their original size. - -*homepage*: - -version | toolchain ---------|---------- -``1.1.8`` | ``GCC/4.8.2`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/q/Quorum.md b/docs/version-specific/supported-software/q/Quorum.md deleted file mode 100644 index f06e14d6e0..0000000000 --- a/docs/version-specific/supported-software/q/Quorum.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Quorum - -QuorUM is an error corrector for Illumina reads - -*homepage*: - -version | toolchain ---------|---------- -``1.1.1`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/q/Qwt.md b/docs/version-specific/supported-software/q/Qwt.md index 77a76701bb..7a988b9aeb 100644 --- a/docs/version-specific/supported-software/q/Qwt.md +++ b/docs/version-specific/supported-software/q/Qwt.md @@ -6,18 +6,11 @@ search: The Qwt library contains GUI Components and utility classes which are primarily useful for programs with a technical background. -*homepage*: +*homepage*: version | toolchain --------|---------- -``6.1.2`` | ``intel/2016a`` -``6.1.3`` | ``foss/2016b`` -``6.1.3`` | ``intel/2016b`` -``6.1.4`` | ``GCCcore/8.2.0`` -``6.1.4`` | ``GCCcore/8.3.0`` -``6.1.4`` | ``foss/2018b`` ``6.1.5`` | ``GCCcore/10.2.0`` -``6.1.5`` | ``GCCcore/9.3.0`` ``6.2.0`` | ``GCCcore/10.3.0`` ``6.2.0`` | ``GCCcore/11.2.0`` ``6.2.0`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/q/QwtPolar.md b/docs/version-specific/supported-software/q/QwtPolar.md index e8d3d84c32..946daf7170 100644 --- a/docs/version-specific/supported-software/q/QwtPolar.md +++ b/docs/version-specific/supported-software/q/QwtPolar.md @@ -11,9 +11,6 @@ The QwtPolar library contains classes for displaying values on a polar coordinat version | toolchain --------|---------- ``1.1.1`` | ``GCCcore/10.2.0`` -``1.1.1`` | ``GCCcore/8.2.0`` -``1.1.1`` | ``foss/2016b`` -``1.1.1`` | ``intel/2016b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/index.md b/docs/version-specific/supported-software/q/index.md index 0030a50b08..037fb6a336 100644 --- a/docs/version-specific/supported-software/q/index.md +++ b/docs/version-specific/supported-software/q/index.md @@ -9,49 +9,37 @@ search: * [q2-krona](q2-krona.md) - * [Q6](Q6.md) * [QCA](QCA.md) * [qcat](qcat.md) * [QCG-PilotJob](QCG-PilotJob.md) - * [qcint](qcint.md) * [QCxMS](QCxMS.md) * [QD](QD.md) - * [QDD](QDD.md) - * [QEMU](QEMU.md) * [qforce](qforce.md) * [QGIS](QGIS.md) * [Qhull](Qhull.md) - * [QIIME](QIIME.md) * [QIIME2](QIIME2.md) * [Qiskit](Qiskit.md) * [QJson](QJson.md) * [qmflows](qmflows.md) - * [QML](QML.md) * [qnorm](qnorm.md) - * [qpth](qpth.md) * [qrupdate](qrupdate.md) * [QScintilla](QScintilla.md) - * [Qt](Qt.md) * [Qt5](Qt5.md) * [Qt5Webkit](Qt5Webkit.md) * [Qt6](Qt6.md) * [Qtconsole](Qtconsole.md) * [QtKeychain](QtKeychain.md) * [QTLtools](QTLtools.md) - * [qtop](qtop.md) * [QtPy](QtPy.md) * [Qualimap](Qualimap.md) * [Quandl](Quandl.md) * [QuantumESPRESSO](QuantumESPRESSO.md) + * [quarto](quarto.md) * [QUAST](QUAST.md) - * [QuaZIP](QuaZIP.md) * [QuickFF](QuickFF.md) * [QuickPIC](QuickPIC.md) * [QuickTree](QuickTree.md) - * [Quip](Quip.md) - * [Quorum](Quorum.md) * [QuPath](QuPath.md) - * [QuTiP](QuTiP.md) * [Qwt](Qwt.md) * [QwtPolar](QwtPolar.md) diff --git a/docs/version-specific/supported-software/q/qcat.md b/docs/version-specific/supported-software/q/qcat.md index 7e0134a228..7866c282e3 100644 --- a/docs/version-specific/supported-software/q/qcat.md +++ b/docs/version-specific/supported-software/q/qcat.md @@ -8,13 +8,11 @@ qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.1.0`` | | ``foss/2022b`` -``1.1.0`` | | ``foss/2023a`` -``1.1.0`` | ``-Python-3.7.4`` | ``intel/2019b`` -``1.1.0`` | ``-Python-3.8.2`` | ``intel/2020a`` +version | toolchain +--------|---------- +``1.1.0`` | ``foss/2022b`` +``1.1.0`` | ``foss/2023a`` +``1.1.0`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/qcint.md b/docs/version-specific/supported-software/q/qcint.md deleted file mode 100644 index 5a20ea35f8..0000000000 --- a/docs/version-specific/supported-software/q/qcint.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# qcint - -libcint is an open source library for analytical Gaussian integrals. qcint is an optimized libcint branch for the x86-64 platform. - -*homepage*: - -version | toolchain ---------|---------- -``3.0.18`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/q/qforce.md b/docs/version-specific/supported-software/q/qforce.md index 6d207f3788..5b8bfd2b23 100644 --- a/docs/version-specific/supported-software/q/qforce.md +++ b/docs/version-specific/supported-software/q/qforce.md @@ -4,7 +4,7 @@ search: --- # qforce -Quantum Mechanically augmented molecular force fields. Q-Force is a software package for deriving all-atom force fields from quantum mechanical calculations in an automated manner. +Quantum Mechanically augmented molecular force fields. Q-Force is a software package for deriving all-atom force fields from quantum mechanical calculations in an automated manner. *homepage*: diff --git a/docs/version-specific/supported-software/q/qmflows.md b/docs/version-specific/supported-software/q/qmflows.md index 9e02da9658..e0df5c36f7 100644 --- a/docs/version-specific/supported-software/q/qmflows.md +++ b/docs/version-specific/supported-software/q/qmflows.md @@ -4,7 +4,7 @@ search: --- # qmflows -This library tackles the construction and efficient execution of computational chemistry workflows. This allows computational chemists to use the emerging massively parallel compute environments in an easy manner and focus on interpretation of scientific data rather than on tedious job submission procedures and manual data processing. +This library tackles the construction and efficient execution of computational chemistry workflows. This allows computational chemists to use the emerging massively parallel compute environments in an easy manner and focus on interpretation of scientific data rather than on tedious job submission procedures and manual data processing. *homepage*: diff --git a/docs/version-specific/supported-software/q/qpth.md b/docs/version-specific/supported-software/q/qpth.md deleted file mode 100644 index df6a5bdfd7..0000000000 --- a/docs/version-specific/supported-software/q/qpth.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# qpth - -A fast and differentiable QP solver for PyTorch. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.0.13-20190626`` | ``-Python-3.7.2`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/q/qrupdate.md b/docs/version-specific/supported-software/q/qrupdate.md index 9b27934325..ee628e3dc4 100644 --- a/docs/version-specific/supported-software/q/qrupdate.md +++ b/docs/version-specific/supported-software/q/qrupdate.md @@ -10,19 +10,9 @@ qrupdate is a Fortran library for fast updates of QR and Cholesky decompositions version | toolchain --------|---------- -``1.1.2`` | ``GCC/5.4.0-2.26`` -``1.1.2`` | ``GCC/8.2.0-2.31.1`` ``1.1.2`` | ``GCCcore/10.2.0`` ``1.1.2`` | ``GCCcore/11.2.0`` ``1.1.2`` | ``GCCcore/11.3.0`` -``1.1.2`` | ``GCCcore/6.4.0`` -``1.1.2`` | ``GCCcore/8.3.0`` -``1.1.2`` | ``foss/2016a`` -``1.1.2`` | ``foss/2018a`` -``1.1.2`` | ``foss/2018b`` -``1.1.2`` | ``intel/2016a`` -``1.1.2`` | ``intel/2016b`` -``1.1.2`` | ``intel/2017a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/qtop.md b/docs/version-specific/supported-software/q/qtop.md deleted file mode 100644 index 9902f53be0..0000000000 --- a/docs/version-specific/supported-software/q/qtop.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# qtop - -qtop is a nifty command-line tool for monitoring queueing systems, esp. PBS/torque. It tries to fit as much information as possible in your screen's real estate, by stitching together the output of commands like pbsnodes -a, qstat & qstat -q. It is possible to write wrappers for other platforms -people have done so for SGE, OAR etc- or, even examine traces offline and present the sampled information. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``53`` | ``-1`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/suds.md b/docs/version-specific/supported-software/q/quarto.md similarity index 83% rename from docs/version-specific/supported-software/s/suds.md rename to docs/version-specific/supported-software/q/quarto.md index 5ca922844f..850ec8d529 100644 --- a/docs/version-specific/supported-software/s/suds.md +++ b/docs/version-specific/supported-software/q/quarto.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# suds +# quarto -Lightweight SOAP client +An open-source scientific and technical publishing system. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.3.3.0`` | ``-Python-3.6.4`` | ``intel/2018a`` +``1.5.57`` | ``-x64`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/R-INLA.md b/docs/version-specific/supported-software/r/R-INLA.md index ba5116811c..4d860c92c2 100644 --- a/docs/version-specific/supported-software/r/R-INLA.md +++ b/docs/version-specific/supported-software/r/R-INLA.md @@ -11,6 +11,7 @@ R-INLA is a package in R that do approximate Bayesian inference for Latent Gauss version | versionsuffix | toolchain --------|---------------|---------- ``21.05.02`` | ``-R-4.0.4`` | ``foss/2020b`` +``24.01.18`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/R-bundle-Bioconductor.md b/docs/version-specific/supported-software/r/R-bundle-Bioconductor.md index 68dfcb4058..3fc5e8fddc 100644 --- a/docs/version-specific/supported-software/r/R-bundle-Bioconductor.md +++ b/docs/version-specific/supported-software/r/R-bundle-Bioconductor.md @@ -10,8 +10,6 @@ Bioconductor provides tools for the analysis and coprehension of high-throughpu version | versionsuffix | toolchain --------|---------------|---------- -``3.10`` | | ``foss/2019b`` -``3.11`` | ``-R-4.0.0`` | ``foss/2020a`` ``3.12`` | ``-R-4.0.3`` | ``foss/2020b`` ``3.13`` | ``-R-4.1.0`` | ``foss/2021a`` ``3.14`` | ``-R-4.1.2`` | ``foss/2021b`` @@ -19,17 +17,8 @@ version | versionsuffix | toolchain ``3.15`` | ``-R-4.2.1`` | ``foss/2022a`` ``3.16`` | ``-R-4.2.2`` | ``foss/2022b`` ``3.18`` | ``-R-4.3.2`` | ``foss/2023a`` -``3.2`` | ``-R-3.2.3`` | ``foss/2016a`` -``3.2`` | ``-R-3.2.3`` | ``intel/2016a`` -``3.3`` | ``-R-3.3.1`` | ``intel/2016b`` -``3.5`` | ``-R-3.4.0`` | ``intel/2017a`` -``3.6`` | ``-R-3.4.3`` | ``foss/2017b`` -``3.6`` | ``-R-3.4.3`` | ``intel/2017b`` -``3.6`` | ``-R-3.4.4`` | ``intel/2018a`` -``3.7`` | ``-R-3.5.1`` | ``foss/2018b`` -``3.7`` | ``-R-3.5.0`` | ``iomkl/2018a`` -``3.8`` | ``-R-3.5.1`` | ``foss/2018b`` -``3.9`` | ``-R-3.6.0`` | ``foss/2019a`` +``3.19`` | ``-R-4.4.1`` | ``foss/2023b`` +``3.20`` | ``-R-4.4.2`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/R-bundle-CRAN.md b/docs/version-specific/supported-software/r/R-bundle-CRAN.md index c9cf72c67b..7d62405327 100644 --- a/docs/version-specific/supported-software/r/R-bundle-CRAN.md +++ b/docs/version-specific/supported-software/r/R-bundle-CRAN.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``2023.12`` | ``foss/2023a`` ``2024.06`` | ``foss/2023b`` +``2024.11`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/R-keras.md b/docs/version-specific/supported-software/r/R-keras.md index f1ae287289..c208ee691a 100644 --- a/docs/version-specific/supported-software/r/R-keras.md +++ b/docs/version-specific/supported-software/r/R-keras.md @@ -10,11 +10,6 @@ Interface to 'Keras' , a high-level neural networks 'API'. version | versionsuffix | toolchain --------|---------------|---------- -``2.1.6`` | ``-R-3.4.4`` | ``foss/2018a`` -``2.2.5.0`` | ``-Python-3.7.2-R-3.6.0`` | ``foss/2019a`` -``2.2.5.0`` | ``-Python-3.7.4-R-3.6.2`` | ``foss/2019b`` -``2.2.5.0`` | ``-Python-3.7.2-R-3.6.0`` | ``fosscuda/2019a`` -``2.2.5.0`` | ``-Python-3.7.4-R-3.6.2`` | ``fosscuda/2019b`` ``2.4.0`` | ``-R-4.0.4`` | ``foss/2020b`` ``2.4.0`` | ``-R-4.0.4`` | ``fosscuda/2020b`` diff --git a/docs/version-specific/supported-software/r/R-opencv.md b/docs/version-specific/supported-software/r/R-opencv.md deleted file mode 100644 index 90a31628f6..0000000000 --- a/docs/version-specific/supported-software/r/R-opencv.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# R-opencv - -Experimenting with computer vision and machine learning in R. This package exposes some of the available OpenCV algorithms, such as edge, body or face detection. These can either be applied to analyze static images, or to filter live video footage from a camera device. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.2.0`` | ``-R-4.0.0`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/R-tesseract.md b/docs/version-specific/supported-software/r/R-tesseract.md index cac847cee8..b70c44303d 100644 --- a/docs/version-specific/supported-software/r/R-tesseract.md +++ b/docs/version-specific/supported-software/r/R-tesseract.md @@ -10,7 +10,6 @@ The R extension for using tesseract version | versionsuffix | toolchain --------|---------------|---------- -``4.0`` | ``-R-3.5.1`` | ``foss/2018b`` ``5.1.0`` | ``-R-4.2.1`` | ``foss/2022a`` ``5.2.1`` | | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/r/R.md b/docs/version-specific/supported-software/r/R.md index 8c1b423883..76a138a6cd 100644 --- a/docs/version-specific/supported-software/r/R.md +++ b/docs/version-specific/supported-software/r/R.md @@ -4,60 +4,27 @@ search: --- # R -R is a free software environment for statistical computing and graphics. +R is a free software environment for statistical computing and graphics. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.2.3`` | ``-bare`` | ``foss/2016a`` -``3.2.3`` | | ``foss/2016a`` -``3.2.3`` | | ``foss/2016b`` -``3.2.3`` | ``-bare`` | ``intel/2016a`` -``3.2.3`` | ``-libX11-1.6.3`` | ``intel/2016a`` -``3.2.3`` | | ``intel/2016a`` -``3.3.1`` | | ``foss/2016a`` -``3.3.1`` | | ``foss/2016b`` -``3.3.1`` | | ``intel/2016b`` -``3.3.3`` | ``-X11-20160819`` | ``foss/2016b`` -``3.3.3`` | ``-X11-20160819`` | ``intel/2016b`` -``3.3.3`` | ``-X11-20170314`` | ``intel/2017a`` -``3.4.0`` | ``-X11-20170314`` | ``intel/2017a`` -``3.4.1`` | ``-X11-20160819`` | ``foss/2016b`` -``3.4.3`` | ``-X11-20171023`` | ``foss/2017b`` -``3.4.3`` | ``-X11-20171023-HDF5-1.8.19`` | ``intel/2017b`` -``3.4.3`` | ``-X11-20171023`` | ``intel/2017b`` -``3.4.4`` | ``-X11-20180131`` | ``foss/2018a`` -``3.4.4`` | ``-X11-20180131`` | ``intel/2018a`` -``3.4.4`` | ``-X11-20180131`` | ``iomkl/2018a`` -``3.5.0`` | ``-X11-20180131`` | ``iomkl/2018a`` -``3.5.1`` | ``-Python-2.7.15`` | ``foss/2018b`` -``3.5.1`` | ``-bare`` | ``foss/2018b`` -``3.5.1`` | | ``foss/2018b`` -``3.5.1`` | | ``intel/2018b`` -``3.6.0`` | | ``foss/2019a`` -``3.6.0`` | | ``fosscuda/2019a`` -``3.6.0`` | | ``intel/2019a`` -``3.6.2`` | | ``foss/2019b`` -``3.6.2`` | | ``fosscuda/2019b`` -``3.6.2`` | | ``intel/2019b`` -``3.6.3`` | | ``foss/2020a`` -``4.0.0`` | | ``foss/2020a`` -``4.0.0`` | | ``fosscuda/2020a`` -``4.0.3`` | | ``foss/2020b`` -``4.0.3`` | | ``fosscuda/2020b`` -``4.0.4`` | | ``foss/2020b`` -``4.0.4`` | | ``fosscuda/2020b`` -``4.0.5`` | | ``foss/2020b`` -``4.0.5`` | | ``fosscuda/2020b`` -``4.1.0`` | | ``foss/2021a`` -``4.1.2`` | | ``foss/2021b`` -``4.2.0`` | | ``foss/2021b`` -``4.2.1`` | | ``foss/2022a`` -``4.2.2`` | | ``foss/2022b`` -``4.3.2`` | | ``gfbf/2023a`` -``4.3.3`` | | ``gfbf/2023b`` -``4.4.1`` | | ``gfbf/2023b`` +version | toolchain +--------|---------- +``4.0.3`` | ``foss/2020b`` +``4.0.3`` | ``fosscuda/2020b`` +``4.0.4`` | ``foss/2020b`` +``4.0.4`` | ``fosscuda/2020b`` +``4.0.5`` | ``foss/2020b`` +``4.0.5`` | ``fosscuda/2020b`` +``4.1.0`` | ``foss/2021a`` +``4.1.2`` | ``foss/2021b`` +``4.2.0`` | ``foss/2021b`` +``4.2.1`` | ``foss/2022a`` +``4.2.2`` | ``foss/2022b`` +``4.3.2`` | ``gfbf/2023a`` +``4.3.3`` | ``gfbf/2023b`` +``4.4.1`` | ``gfbf/2023b`` +``4.4.2`` | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/R2jags.md b/docs/version-specific/supported-software/r/R2jags.md index dad5842d59..ba7919fb0f 100644 --- a/docs/version-specific/supported-software/r/R2jags.md +++ b/docs/version-specific/supported-software/r/R2jags.md @@ -11,6 +11,7 @@ Providing wrapper functions to implement Bayesian analysis in JAGS. version | versionsuffix | toolchain --------|---------------|---------- ``0.7-1`` | ``-R-4.2.1`` | ``foss/2022a`` +``0.8-9`` | ``-R-4.3.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/RAPIDS.md b/docs/version-specific/supported-software/r/RAPIDS.md new file mode 100644 index 0000000000..b546a9aec2 --- /dev/null +++ b/docs/version-specific/supported-software/r/RAPIDS.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# RAPIDS + +RAPIDS provides unmatched speed with familiar APIs that match the most popular PyData libraries. Built on state-of-the-art foundations like NVIDIA CUDA and Apache Arrow, it unlocks the speed of GPUs with code you already know. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``24.4`` | ``-CUDA-12.1.1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/r/RAPSearch2.md b/docs/version-specific/supported-software/r/RAPSearch2.md deleted file mode 100644 index dd49aec5dc..0000000000 --- a/docs/version-specific/supported-software/r/RAPSearch2.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# RAPSearch2 - -RAPSearch stands for Reduced Alphabet based Protein similarity Search - -*homepage*: - -version | toolchain ---------|---------- -``2.24`` | ``GCC/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/RASPA2.md b/docs/version-specific/supported-software/r/RASPA2.md index 393e995b75..38c0b0d206 100644 --- a/docs/version-specific/supported-software/r/RASPA2.md +++ b/docs/version-specific/supported-software/r/RASPA2.md @@ -4,15 +4,14 @@ search: --- # RASPA2 -A general purpose classical simulation package that can be used for the simulation of molecules in gases, fluids, zeolites, aluminosilicates, metal-organic frameworks, carbon nanotubes and external fields. +RASPA is a software package for simulating adsorption and diffusion of molecules in flexible nanoporous materials. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0.3`` | ``-Python-2.7.12`` | ``intel/2016b`` -``2.0.41`` | | ``foss/2020b`` -``2.0.47`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``2.0.41`` | ``foss/2020b`` +``2.0.47`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/RAxML-NG.md b/docs/version-specific/supported-software/r/RAxML-NG.md index 89369d8ae2..0bdbc08229 100644 --- a/docs/version-specific/supported-software/r/RAxML-NG.md +++ b/docs/version-specific/supported-software/r/RAxML-NG.md @@ -10,14 +10,12 @@ RAxML-NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML version | toolchain --------|---------- -``0.9.0`` | ``GCC/8.3.0`` -``0.9.0`` | ``gompi/2019b`` -``1.0.1`` | ``gompi/2019b`` ``1.0.2`` | ``gompi/2020b`` ``1.0.3`` | ``GCC/10.2.0`` ``1.1.0`` | ``GCC/11.2.0`` ``1.2.0`` | ``GCC/12.2.0`` ``1.2.0`` | ``GCC/12.3.0`` +``1.2.2`` | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/RAxML.md b/docs/version-specific/supported-software/r/RAxML.md index 5454503098..b5d687908a 100644 --- a/docs/version-specific/supported-software/r/RAxML.md +++ b/docs/version-specific/supported-software/r/RAxML.md @@ -10,25 +10,12 @@ RAxML search algorithm for maximum likelihood based inference of phylogenetic tr version | versionsuffix | toolchain --------|---------------|---------- -``8.2.10`` | ``-hybrid-avx2`` | ``intel/2017a`` -``8.2.11`` | ``-hybrid-avx`` | ``foss/2017b`` -``8.2.11`` | ``-hybrid-avx2`` | ``foss/2017b`` -``8.2.11`` | ``-hybrid-sse3`` | ``foss/2017b`` -``8.2.11`` | ``-hybrid-avx`` | ``intel/2017b`` -``8.2.11`` | ``-hybrid-avx2`` | ``intel/2017b`` -``8.2.11`` | ``-hybrid-sse3`` | ``intel/2017b`` -``8.2.11`` | ``-hybrid-avx2`` | ``intel/2018a`` ``8.2.12`` | ``-pthreads-avx2`` | ``GCC/10.2.0`` -``8.2.12`` | ``-hybrid-avx2`` | ``gompi/2020a`` ``8.2.12`` | ``-hybrid-avx2`` | ``gompi/2020b`` ``8.2.12`` | ``-hybrid-avx2`` | ``gompi/2021a`` ``8.2.12`` | ``-hybrid-avx2`` | ``gompi/2021b`` ``8.2.12`` | ``-avx2`` | ``gompi/2022b`` -``8.2.12`` | ``-hybrid-avx2`` | ``iimpi/2019b`` -``8.2.12`` | ``-hybrid-avx2`` | ``intel/2018b`` -``8.2.12`` | ``-hybrid-avx2`` | ``intel/2019a`` -``8.2.4`` | ``-hybrid-avx2`` | ``foss/2016a`` -``8.2.9`` | ``-hybrid-avx2`` | ``foss/2016a`` +``8.2.13`` | ``-avx2`` | ``gompi/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/RBFOpt.md b/docs/version-specific/supported-software/r/RBFOpt.md deleted file mode 100644 index b3cbdc2f0e..0000000000 --- a/docs/version-specific/supported-software/r/RBFOpt.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# RBFOpt - -RBFOpt is a Python library for black-box optimization (also known as derivative-free optimization). - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``4.1.1`` | ``-Python-3.6.6`` | ``intel/2018b`` -``4.1.1`` | | ``intel/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/RDFlib.md b/docs/version-specific/supported-software/r/RDFlib.md index 549fad59dc..8e52928a68 100644 --- a/docs/version-specific/supported-software/r/RDFlib.md +++ b/docs/version-specific/supported-software/r/RDFlib.md @@ -10,8 +10,6 @@ RDFLib is a Python library for working with RDF, a simple yet powerful language version | toolchain --------|---------- -``4.2.2`` | ``GCCcore/8.3.0`` -``4.2.2`` | ``foss/2019a`` ``5.0.0`` | ``GCCcore/10.2.0`` ``6.2.0`` | ``GCCcore/10.3.0`` ``6.2.0`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/r/RDKit.md b/docs/version-specific/supported-software/r/RDKit.md index 58516eb341..36de3536f5 100644 --- a/docs/version-specific/supported-software/r/RDKit.md +++ b/docs/version-specific/supported-software/r/RDKit.md @@ -8,18 +8,13 @@ RDKit is a collection of cheminformatics and machine-learning software written i *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2018.09.3`` | ``-Python-3.6.6`` | ``intel/2018b`` -``2019.09.3`` | ``-Python-3.7.4`` | ``foss/2019b`` -``2020.03.3`` | ``-Python-3.8.2`` | ``foss/2020a`` -``2020.03.3`` | ``-Python-3.8.2`` | ``intel/2020a`` -``2020.09.3`` | ``-Python-3.7.4`` | ``foss/2019b`` -``2021.03.4`` | | ``foss/2021a`` -``2022.03.5`` | | ``foss/2021b`` -``2022.09.4`` | | ``foss/2022a`` -``2023.03.3`` | | ``foss/2021a`` -``2024.03.3`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``2021.03.4`` | ``foss/2021a`` +``2022.03.5`` | ``foss/2021b`` +``2022.09.4`` | ``foss/2022a`` +``2023.03.3`` | ``foss/2021a`` +``2024.03.3`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/RDP-Classifier.md b/docs/version-specific/supported-software/r/RDP-Classifier.md index c221e9f67b..89e1a847c6 100644 --- a/docs/version-specific/supported-software/r/RDP-Classifier.md +++ b/docs/version-specific/supported-software/r/RDP-Classifier.md @@ -6,14 +6,12 @@ search: The RDP Classifier is a naive Bayesian classifier that can rapidly and accurately provides taxonomic assignments from domain to genus, with confidence estimates for each assignment. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2.12`` | ``-Java-1.8`` | ``system`` ``2.13`` | ``-Java-11`` | ``system`` ``2.13`` | ``-Java-17`` | ``system`` -``2.7`` | ``-Java-1.7.0_60`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/RE2.md b/docs/version-specific/supported-software/r/RE2.md index 4a49041f01..d67a5f4ffa 100644 --- a/docs/version-specific/supported-software/r/RE2.md +++ b/docs/version-specific/supported-software/r/RE2.md @@ -10,7 +10,6 @@ RE2 is a fast, safe, thread-friendly alternative to backtracking regular express version | toolchain --------|---------- -``2020-07-01`` | ``GCCcore/8.3.0`` ``2021-06-01`` | ``GCCcore/10.2.0`` ``2022-02-01`` | ``GCCcore/10.3.0`` ``2022-02-01`` | ``GCCcore/11.2.0`` @@ -18,6 +17,7 @@ version | toolchain ``2023-03-01`` | ``GCCcore/12.2.0`` ``2023-08-01`` | ``GCCcore/12.3.0`` ``2024-03-01`` | ``GCCcore/13.2.0`` +``2024-07-02`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/RELION.md b/docs/version-specific/supported-software/r/RELION.md deleted file mode 100644 index fb49d3563d..0000000000 --- a/docs/version-specific/supported-software/r/RELION.md +++ /dev/null @@ -1,30 +0,0 @@ ---- -search: - boost: 0.5 ---- -# RELION - -RELION (for REgularised LIkelihood OptimisatioN, pronounce rely-on) is a stand-alone computer program that employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class averages in electron cryo-microscopy (cryo-EM). - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.4`` | ``-single`` | ``intel/2016b`` -``1.4`` | | ``intel/2016b`` -``2.0.1`` | | ``intel/2016b`` -``2.1`` | | ``foss/2017b`` -``2.1`` | ``-CUDA-9.1.85`` | ``foss/2018a`` -``2.1`` | | ``foss/2018a`` -``2.1`` | | ``fosscuda/2017b`` -``2.1`` | | ``fosscuda/2018a`` -``2.1`` | | ``intel/2017b`` -``2.1`` | | ``intelcuda/2017b`` -``3.0.4`` | | ``foss/2017b`` -``3.0.4`` | | ``intel/2017b`` -``3.0_beta.2018.08.02`` | | ``fosscuda/2018a`` -``3.0_beta.2018.08.02`` | | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/REMORA.md b/docs/version-specific/supported-software/r/REMORA.md deleted file mode 100644 index 7b9c4346fd..0000000000 --- a/docs/version-specific/supported-software/r/REMORA.md +++ /dev/null @@ -1,21 +0,0 @@ ---- -search: - boost: 0.5 ---- -# REMORA - -REsource MOnitoring for Remote Applications - -*homepage*: - -version | toolchain ---------|---------- -``1.8.2`` | ``foss/2017a`` -``1.8.2`` | ``foss/2018a`` -``1.8.2`` | ``intel/2017a`` -``1.8.2`` | ``intel/2018a`` -``1.8.3`` | ``gompi/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/RERconverge.md b/docs/version-specific/supported-software/r/RERconverge.md deleted file mode 100644 index 9e8bb72b3e..0000000000 --- a/docs/version-specific/supported-software/r/RERconverge.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# RERconverge - -RERconverge is a set of software written in R that estimates the correlation between relative evolutionary rates of genes and the evolution of a convergent binary or continuous trait across a phylogeny. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1.0`` | ``-R-3.4.3`` | ``foss/2017b`` -``0.1.0`` | ``-R-3.4.3`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/Bonmin.md b/docs/version-specific/supported-software/r/REViewer.md similarity index 71% rename from docs/version-specific/supported-software/b/Bonmin.md rename to docs/version-specific/supported-software/r/REViewer.md index e37c73257e..6b60c0dad8 100644 --- a/docs/version-specific/supported-software/b/Bonmin.md +++ b/docs/version-specific/supported-software/r/REViewer.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# Bonmin +# REViewer -Ipopt (Interior Point OPTimizer, pronounced eye-pea-Opt) is a software package for large-scale nonlinear optimization. +REViewer is a tool for visualizing alignments of reads in regions containing tandem repeats. REViewer requires a BAMlet with graph-realigned reads generated by ExpansionHunter and the corresponding variant catalog. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.8.7`` | ``intel/2019a`` +``0.2.7`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/RFdiffusion.md b/docs/version-specific/supported-software/r/RFdiffusion.md index 9eaf6a702f..ffc72a85ee 100644 --- a/docs/version-specific/supported-software/r/RFdiffusion.md +++ b/docs/version-specific/supported-software/r/RFdiffusion.md @@ -4,7 +4,7 @@ search: --- # RFdiffusion -RFdiffusion is an open source method for structure generation, with or without conditional information (a motif, target etc). It can perform a whole range of protein design challenges as we have outlined in the RFdiffusion paper. +RFdiffusion is an open source method for structure generation, with or without conditional information (a motif, target etc). It can perform a whole range of protein design challenges as we have outlined in the RFdiffusion paper. *homepage*: diff --git a/docs/version-specific/supported-software/r/RMBlast.md b/docs/version-specific/supported-software/r/RMBlast.md index ec359e828d..79e3760982 100644 --- a/docs/version-specific/supported-software/r/RMBlast.md +++ b/docs/version-specific/supported-software/r/RMBlast.md @@ -6,17 +6,14 @@ search: RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST suite. The primary difference between this distribution and the NCBI distribution is the addition of a new program 'rmblastn' for use with RepeatMasker and RepeatModeler. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.10.0`` | | ``gompi/2019b`` -``2.11.0`` | | ``gompi/2020b`` -``2.13.0`` | | ``gompi/2022a`` -``2.14.0`` | | ``gompi/2021a`` -``2.14.1`` | | ``gompi/2023a`` -``2.2.28`` | ``-Python-2.7.11`` | ``foss/2016a`` -``2.9.0`` | | ``gompi/2019b`` +version | toolchain +--------|---------- +``2.11.0`` | ``gompi/2020b`` +``2.13.0`` | ``gompi/2022a`` +``2.14.0`` | ``gompi/2021a`` +``2.14.1`` | ``gompi/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/RNA-Bloom.md b/docs/version-specific/supported-software/r/RNA-Bloom.md index a45ed6a851..6c9ec2c4f3 100644 --- a/docs/version-specific/supported-software/r/RNA-Bloom.md +++ b/docs/version-specific/supported-software/r/RNA-Bloom.md @@ -10,7 +10,6 @@ RNA-Bloom is a fast and memory-efficient de novo transcript sequence assembler. version | toolchain --------|---------- -``1.2.3`` | ``GCC/8.3.0`` ``1.4.3`` | ``GCC/11.2.0`` ``2.0.1`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/r/RNA-SeQC.md b/docs/version-specific/supported-software/r/RNA-SeQC.md index 264eefb47a..ac30177272 100644 --- a/docs/version-specific/supported-software/r/RNA-SeQC.md +++ b/docs/version-specific/supported-software/r/RNA-SeQC.md @@ -11,8 +11,6 @@ RNA-SeQC is a java program which computes a series of quality control metrics fo version | versionsuffix | toolchain --------|---------------|---------- ``1.1.8`` | ``-Java-11`` | ``GCCcore/11.2.0`` -``1.1.8`` | ``-Java-1.8.0_121`` | ``foss/2016b`` -``1.1.8`` | ``-Java-1.8`` | ``foss/2018b`` ``2.4.2`` | | ``foss/2021a`` ``2.4.2`` | | ``foss/2021b`` diff --git a/docs/version-specific/supported-software/r/RNAIndel.md b/docs/version-specific/supported-software/r/RNAIndel.md deleted file mode 100644 index a06b14670e..0000000000 --- a/docs/version-specific/supported-software/r/RNAIndel.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# RNAIndel - -RNAIndel calls coding indels and classifies them into somatic, germline, and artifact from tumor RNA-Seq data. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.3.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``1.0.0`` | ``-Python-3.6.6`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/RNAclust.md b/docs/version-specific/supported-software/r/RNAclust.md deleted file mode 100644 index 6e16c740eb..0000000000 --- a/docs/version-specific/supported-software/r/RNAclust.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# RNAclust - -RNAclust is a perl script summarizing all the single steps required for clustering of structured RNA motifs, i.e. identifying groups of RNA sequences sharing a secondary structure motif. It requires as input a multiple FASTA file. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.3`` | ``-Perl-5.24.0`` | ``foss/2016b`` -``1.3`` | ``-Python-3.6.6`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/RNAcode.md b/docs/version-specific/supported-software/r/RNAcode.md deleted file mode 100644 index efac440806..0000000000 --- a/docs/version-specific/supported-software/r/RNAcode.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# RNAcode - -RNAcode - Analyze the protein coding potential in multiple sequence alignments - -*homepage*: - -version | toolchain ---------|---------- -``0.3`` | ``foss/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/RNAmmer.md b/docs/version-specific/supported-software/r/RNAmmer.md deleted file mode 100644 index d084a2ad65..0000000000 --- a/docs/version-specific/supported-software/r/RNAmmer.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# RNAmmer - -This is an example description. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2`` | ``-Perl-5.28.0`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/RNAz.md b/docs/version-specific/supported-software/r/RNAz.md deleted file mode 100644 index f047005218..0000000000 --- a/docs/version-specific/supported-software/r/RNAz.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# RNAz - -RNAz is a program for predicting structurally conserved and thermodynamically stable RNA secondary structures in multiple sequence alignments. - -*homepage*: - -version | toolchain ---------|---------- -``2.1`` | ``foss/2016b`` -``2.1`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/ROI_PAC.md b/docs/version-specific/supported-software/r/ROI_PAC.md deleted file mode 100644 index b44e4b4dfe..0000000000 --- a/docs/version-specific/supported-software/r/ROI_PAC.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ROI_PAC - -Repeat Orbit Interferometry PACkage (ROI_PAC), software for processing synthetic aperture radar data to produce differential interferograms - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0.1`` | ``-Perl-5.24.1`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/ROME.md b/docs/version-specific/supported-software/r/ROME.md deleted file mode 100644 index 2aaa9a0311..0000000000 --- a/docs/version-specific/supported-software/r/ROME.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ROME - -The ROME (Refinement and Optimization via Machine Learning for cryo-EM) Software package is one of the major research products at the Intel® PCCSB. - -*homepage*: - -version | toolchain ---------|---------- -``1.1.2`` | ``intel/2019.02`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/ROOT.md b/docs/version-specific/supported-software/r/ROOT.md index 975b948c6d..8b2e8964ef 100644 --- a/docs/version-specific/supported-software/r/ROOT.md +++ b/docs/version-specific/supported-software/r/ROOT.md @@ -6,27 +6,15 @@ search: The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data in a very efficient way. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``6.10.02`` | ``-Python-2.7.12`` | ``foss/2016b`` -``6.10.02`` | ``-Python-2.7.12`` | ``intel/2016b`` -``6.10.04`` | ``-Python-2.7.13`` | ``intel/2017a`` -``6.10.08`` | ``-Python-2.7.14`` | ``foss/2017b`` -``6.10.08`` | ``-Python-2.7.14`` | ``intel/2017b`` -``6.14.06`` | ``-Python-2.7.15`` | ``foss/2018b`` -``6.14.06`` | ``-Python-3.6.6`` | ``foss/2018b`` -``6.20.04`` | ``-Python-3.7.4`` | ``foss/2019b`` -``6.22.08`` | | ``foss/2020b`` -``6.24.06`` | | ``foss/2021b`` -``6.26.06`` | | ``foss/2022a`` -``6.26.10`` | | ``foss/2022b`` -``6.30.06`` | | ``foss/2023a`` -``v5.34.34`` | ``-Python-2.7.11`` | ``intel/2016a`` -``v5.34.36`` | ``-Python-2.7.11`` | ``intel/2016a`` -``v6.06.02`` | ``-Python-2.7.12`` | ``intel/2016b`` -``v6.08.02`` | ``-Python-2.7.11`` | ``foss/2016a`` +version | toolchain +--------|---------- +``6.22.08`` | ``foss/2020b`` +``6.24.06`` | ``foss/2021b`` +``6.26.06`` | ``foss/2022a`` +``6.26.10`` | ``foss/2022b`` +``6.30.06`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/RQGIS3.md b/docs/version-specific/supported-software/r/RQGIS3.md deleted file mode 100644 index d1274aee84..0000000000 --- a/docs/version-specific/supported-software/r/RQGIS3.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# RQGIS3 - -RQGIS3 establishes an interface between R and QGIS3, i.e., it allows the user to access QGIS3 functionalities from within R. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20190903`` | ``-R-3.6.0`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/RSEM.md b/docs/version-specific/supported-software/r/RSEM.md index d79b8398ad..ef13e4f591 100644 --- a/docs/version-specific/supported-software/r/RSEM.md +++ b/docs/version-specific/supported-software/r/RSEM.md @@ -4,24 +4,15 @@ search: --- # RSEM -RNA-Seq by Expectation-Maximization) +RNA-Seq by Expectation-Maximization -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.2.26`` | ``GNU/4.9.3-2.25`` -``1.2.30`` | ``foss/2016a`` -``1.2.30`` | ``intel/2016b`` -``1.3.0`` | ``foss/2016b`` -``1.3.0`` | ``intel/2017a`` -``1.3.1`` | ``foss/2017b`` -``1.3.1`` | ``intel/2017b`` -``1.3.1`` | ``intel/2018a`` -``1.3.2`` | ``foss/2018b`` -``1.3.3`` | ``foss/2019b`` ``1.3.3`` | ``foss/2021b`` ``1.3.3`` | ``foss/2022a`` +``1.3.3`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/RSeQC.md b/docs/version-specific/supported-software/r/RSeQC.md index 717623f30f..9a4c076aac 100644 --- a/docs/version-specific/supported-software/r/RSeQC.md +++ b/docs/version-specific/supported-software/r/RSeQC.md @@ -4,18 +4,14 @@ search: --- # RSeQC -RSeQC provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data. Some basic modules quickly inspect sequence quality, nucleotide composition bias, PCR bias and GC bias, while RNA-seq specific modules evaluate sequencing saturation, mapped reads distribution, coverage uniformity, strand specificity, transcript level RNA integrity etc. +RSeQC provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data. Some basic modules quickly inspect sequence quality, nucleotide composition bias, PCR bias and GC bias, while RNA-seq specific modules evaluate sequencing saturation, mapped reads distribution, coverage uniformity, strand specificity, transcript level RNA integrity etc. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.6.4`` | ``-Python-2.7.12-R-3.3.1`` | ``foss/2016b`` -``2.6.4`` | ``-Python-2.7.14`` | ``intel/2018a`` -``3.0.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``4.0.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``4.0.0`` | | ``foss/2021a`` -``4.0.0`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``4.0.0`` | ``foss/2021a`` +``4.0.0`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/RStan.md b/docs/version-specific/supported-software/r/RStan.md deleted file mode 100644 index 0dffd85ddb..0000000000 --- a/docs/version-specific/supported-software/r/RStan.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# RStan - -RStan is the R interface to Stan. Stan is a state-of-the-art platform for statistical modeling and high-performance statistical computation. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.18.2`` | ``-R-3.4.3`` | ``foss/2017b`` -``2.18.2`` | ``-R-3.5.1`` | ``foss/2018b`` -``2.18.2`` | ``-R-3.4.3`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/RStudio-Server.md b/docs/version-specific/supported-software/r/RStudio-Server.md index b44ade72e3..3eb40d17b1 100644 --- a/docs/version-specific/supported-software/r/RStudio-Server.md +++ b/docs/version-specific/supported-software/r/RStudio-Server.md @@ -10,14 +10,12 @@ This is the RStudio Server version. RStudio is a set of integrated tools designe version | versionsuffix | toolchain --------|---------------|---------- -``1.2.5033`` | ``-Java-11`` | ``fosscuda/2019b`` -``1.2.5042`` | ``-Java-11`` | ``foss/2019b`` -``1.3.1093`` | ``-Java-11-R-4.0.0`` | ``foss/2020a`` -``1.3.959`` | ``-Java-11-R-4.0.0`` | ``foss/2020a`` ``1.4.1717`` | ``-Java-11-R-4.1.0`` | ``foss/2021a`` ``2022.07.2+576`` | ``-Java-11-R-4.2.1`` | ``foss/2022a`` ``2023.09.1+494`` | ``-Java-11-R-4.3.2`` | ``foss/2023a`` ``2023.12.1+402`` | ``-Java-11-R-4.3.3`` | ``gfbf/2023b`` +``2024.09.0+375`` | ``-Java-11-R-4.4.1`` | ``foss/2023b`` +``2024.12.0+467`` | ``-Java-17-R-4.4.2`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/RTG-Tools.md b/docs/version-specific/supported-software/r/RTG-Tools.md index eb5d484043..66a0d0552e 100644 --- a/docs/version-specific/supported-software/r/RTG-Tools.md +++ b/docs/version-specific/supported-software/r/RTG-Tools.md @@ -11,7 +11,6 @@ RTG Tools contains utilities to easily manipulate and accurately compare multipl version | versionsuffix | toolchain --------|---------------|---------- ``3.12.1`` | ``-Java-11`` | ``system`` -``3.9.1`` | ``-Java-1.8`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/RaGOO.md b/docs/version-specific/supported-software/r/RaGOO.md deleted file mode 100644 index b76e00960b..0000000000 --- a/docs/version-specific/supported-software/r/RaGOO.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# RaGOO - -A tool to order and orient genome assembly contigs via Minimap2 alignments to a reference genome - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.11`` | ``-Python-3.6.6`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/Racon.md b/docs/version-specific/supported-software/r/Racon.md index 28649dfccc..838243db74 100644 --- a/docs/version-specific/supported-software/r/Racon.md +++ b/docs/version-specific/supported-software/r/Racon.md @@ -6,22 +6,18 @@ search: Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.3.2`` | ``GCCcore/8.2.0`` -``1.4.10`` | ``GCC/7.3.0-2.30`` -``1.4.13`` | ``GCCcore/8.3.0`` -``1.4.13`` | ``GCCcore/9.3.0`` ``1.4.21`` | ``GCCcore/10.2.0`` ``1.4.21`` | ``GCCcore/10.3.0`` -``1.4.7`` | ``GCCcore/8.2.0`` -``1.4.7`` | ``gcccuda/2019b`` ``1.5.0`` | ``GCCcore/11.2.0`` ``1.5.0`` | ``GCCcore/11.3.0`` ``1.5.0`` | ``GCCcore/12.2.0`` ``1.5.0`` | ``GCCcore/12.3.0`` +``1.5.0`` | ``GCCcore/13.2.0`` +``1.5.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/Ragout.md b/docs/version-specific/supported-software/r/Ragout.md index 7572183fdc..3c33176678 100644 --- a/docs/version-specific/supported-software/r/Ragout.md +++ b/docs/version-specific/supported-software/r/Ragout.md @@ -4,14 +4,13 @@ search: --- # Ragout -Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome assembly using multiple references. Given a set of assembly fragments (contigs/scaffolds) and one or multiple related references (complete or draft), it produces a chromosome-scale assembly (as a set of scaffolds). +Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome-level scaffolding using multiple references. Given initial assembly fragments (contigs/scaffolds) and one or multiple related references (complete or draft), it produces a chromosome-scale assembly (as a set of scaffolds). -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0`` | ``-Python-2.7.12`` | ``foss/2016b`` -``2.3`` | | ``foss/2020b`` +version | toolchain +--------|---------- +``2.3`` | ``foss/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/RapidJSON.md b/docs/version-specific/supported-software/r/RapidJSON.md index 0088752d95..32a5824362 100644 --- a/docs/version-specific/supported-software/r/RapidJSON.md +++ b/docs/version-specific/supported-software/r/RapidJSON.md @@ -19,9 +19,6 @@ version | toolchain ``1.1.0`` | ``GCCcore/11.3.0`` ``1.1.0`` | ``GCCcore/12.2.0`` ``1.1.0`` | ``GCCcore/12.3.0`` -``1.1.0`` | ``GCCcore/8.2.0`` -``1.1.0`` | ``GCCcore/8.3.0`` -``1.1.0`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/Rascaf.md b/docs/version-specific/supported-software/r/Rascaf.md deleted file mode 100644 index 4afd50872e..0000000000 --- a/docs/version-specific/supported-software/r/Rascaf.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Rascaf - -Rascaf (RnA-seq SCAFfolder) uses continuity and order information from paired-end RNA-seq reads to improve a draft assembly, particularly in the gene regions. - -*homepage*: - -version | toolchain ---------|---------- -``1.0.2`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/Ray-assembler.md b/docs/version-specific/supported-software/r/Ray-assembler.md deleted file mode 100644 index 0407f5cde0..0000000000 --- a/docs/version-specific/supported-software/r/Ray-assembler.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Ray-assembler - -Parallel genome assemblies for parallel DNA sequencing - -*homepage*: - -version | toolchain ---------|---------- -``2.3.1`` | ``iimpi/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/Ray-project.md b/docs/version-specific/supported-software/r/Ray-project.md index da98ba60bb..8fdc90ef36 100644 --- a/docs/version-specific/supported-software/r/Ray-project.md +++ b/docs/version-specific/supported-software/r/Ray-project.md @@ -8,15 +8,14 @@ Ray is a fast and simple framework for building and running distributed applicat *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.8.4`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.0.1`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``1.13.0`` | | ``foss/2021a`` -``1.13.0`` | | ``foss/2021b`` -``1.9.2`` | | ``foss/2021b`` -``2.2.0`` | | ``foss/2022a`` -``2.9.1`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``1.13.0`` | ``foss/2021a`` +``1.13.0`` | ``foss/2021b`` +``1.9.2`` | ``foss/2021b`` +``2.2.0`` | ``foss/2022a`` +``2.37.0`` | ``foss/2024a`` +``2.9.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/Raysect.md b/docs/version-specific/supported-software/r/Raysect.md index 577ac613ab..52d24e6b11 100644 --- a/docs/version-specific/supported-software/r/Raysect.md +++ b/docs/version-specific/supported-software/r/Raysect.md @@ -8,11 +8,10 @@ Raysect is an OOP ray-tracing framework for Python *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.6.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``0.7.1`` | | ``foss/2020b`` -``0.7.1`` | | ``intel/2020b`` +version | toolchain +--------|---------- +``0.7.1`` | ``foss/2020b`` +``0.7.1`` | ``intel/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/Rcorrector.md b/docs/version-specific/supported-software/r/Rcorrector.md deleted file mode 100644 index f9036528bf..0000000000 --- a/docs/version-specific/supported-software/r/Rcorrector.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Rcorrector - -Rcorrector(RNA-seq error CORRECTOR) is a kmer-based error correction method for RNA-seq data. - -*homepage*: - -version | toolchain ---------|---------- -``1.0.2`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/ReFrame.md b/docs/version-specific/supported-software/r/ReFrame.md index c24680464c..f62853db50 100644 --- a/docs/version-specific/supported-software/r/ReFrame.md +++ b/docs/version-specific/supported-software/r/ReFrame.md @@ -10,10 +10,6 @@ ReFrame is a framework for writing regression tests for HPC systems. version | versionsuffix | toolchain --------|---------------|---------- -``2.18`` | | ``system`` -``2.19`` | | ``system`` -``2.20`` | | ``system`` -``2.21`` | | ``system`` ``3.0`` | | ``system`` ``3.10.1`` | | ``system`` ``3.11.0`` | | ``system`` @@ -41,6 +37,7 @@ version | versionsuffix | toolchain ``4.6.2`` | | ``GCCcore/13.2.0`` ``4.6.2`` | ``-Python-3.6`` | ``system`` ``4.6.2`` | | ``system`` +``4.6.3`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/ReMatCh.md b/docs/version-specific/supported-software/r/ReMatCh.md deleted file mode 100644 index 0b99556c8c..0000000000 --- a/docs/version-specific/supported-software/r/ReMatCh.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ReMatCh - -Reads mapping against target sequences, checking mapping and consensus sequences production - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.2`` | ``-Python-2.7.12`` | ``foss/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/Reads2snp.md b/docs/version-specific/supported-software/r/Reads2snp.md deleted file mode 100644 index 9619d4bf5d..0000000000 --- a/docs/version-specific/supported-software/r/Reads2snp.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Reads2snp - -reads2snp is a SNP and genotype caller: it predicts the genotype of distinct individuals at distinct positions of a set of sequences based on read mapping / read counts. Its typical input is a bam file. Its typical output is a vcf file. It is written in C++, based on the bio++ libraries, multi-threaded with openMP, available under Linux and MacOS - -*homepage*: - -version | toolchain ---------|---------- -``2.0`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/Reapr.md b/docs/version-specific/supported-software/r/Reapr.md deleted file mode 100644 index 0b6c007942..0000000000 --- a/docs/version-specific/supported-software/r/Reapr.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Reapr - -A tool that evaluates the accuracy of a genome assembly using mapped paired end reads, without the use of a reference genome for comparison. - -*homepage*: - -version | toolchain ---------|---------- -``1.0.18`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/Red.md b/docs/version-specific/supported-software/r/Red.md deleted file mode 100644 index 89316940f8..0000000000 --- a/docs/version-specific/supported-software/r/Red.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Red - -Red (REpeat Detector) - -*homepage*: - -version | toolchain ---------|---------- -``2015-05-22`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/Redis.md b/docs/version-specific/supported-software/r/Redis.md index b418dee660..f3baec0959 100644 --- a/docs/version-specific/supported-software/r/Redis.md +++ b/docs/version-specific/supported-software/r/Redis.md @@ -13,8 +13,10 @@ version | toolchain ``6.2.6`` | ``GCC/10.3.0`` ``6.2.6`` | ``GCC/11.2.0`` ``7.0.8`` | ``GCC/11.3.0`` +``7.2.3`` | ``GCCcore/12.2.0`` ``7.2.3`` | ``GCCcore/12.3.0`` ``7.2.4`` | ``GCCcore/13.2.0`` +``7.4.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/Redundans.md b/docs/version-specific/supported-software/r/Redundans.md deleted file mode 100644 index d215699cbb..0000000000 --- a/docs/version-specific/supported-software/r/Redundans.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Redundans - -Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes. - -*homepage*: - -version | toolchain ---------|---------- -``0.13c`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/Regenie.md b/docs/version-specific/supported-software/r/Regenie.md index c0ac229670..cf50981553 100644 --- a/docs/version-specific/supported-software/r/Regenie.md +++ b/docs/version-specific/supported-software/r/Regenie.md @@ -4,7 +4,7 @@ search: --- # Regenie -Regenie is a C++ program for whole genome regression modelling of large genome-wide association studies. It is developed and supported by a team of scientists at the Regeneron Genetics Center. +Regenie is a C++ program for whole genome regression modelling of large genome-wide association studies. It is developed and supported by a team of scientists at the Regeneron Genetics Center. *homepage*: diff --git a/docs/version-specific/supported-software/r/RepastHPC.md b/docs/version-specific/supported-software/r/RepastHPC.md deleted file mode 100644 index bd539513c7..0000000000 --- a/docs/version-specific/supported-software/r/RepastHPC.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# RepastHPC - -The Repast Suite is a family of advanced, free, and open source agent-based modeling and simulation platforms that have collectively been under continuous development for over 15 years: Repast for High Performance Computing 2.2.0, released on 30 September 2016, is a lean and expert-focused C++-based modeling system that is designed for use on large computing clusters and supercomputers. - -*homepage*: - -version | toolchain ---------|---------- -``2.2.0`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/RepeatMasker.md b/docs/version-specific/supported-software/r/RepeatMasker.md index 23a878115a..73c4caa2f0 100644 --- a/docs/version-specific/supported-software/r/RepeatMasker.md +++ b/docs/version-specific/supported-software/r/RepeatMasker.md @@ -6,19 +6,15 @@ search: RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.0.8`` | ``-Perl-5.26.0-HMMER`` | ``GCC/6.4.0-2.28`` -``4.0.8`` | ``-Perl-5.26.0-HMMER`` | ``iccifort/2017.4.196-GCC-6.4.0-2.28`` -``4.0.8`` | ``-Perl-5.28.0-HMMER`` | ``intel/2018b`` -``4.0.9-p2`` | ``-HMMER`` | ``gompi/2019b`` -``4.1.2-p1`` | | ``foss/2020b`` -``4.1.4`` | | ``foss/2022a`` -``4.1.5`` | | ``foss/2021a`` -``4.1.5`` | | ``foss/2022a`` -``4.1.7-p1`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``4.1.2-p1`` | ``foss/2020b`` +``4.1.4`` | ``foss/2022a`` +``4.1.5`` | ``foss/2021a`` +``4.1.5`` | ``foss/2022a`` +``4.1.7-p1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/RheoTool.md b/docs/version-specific/supported-software/r/RheoTool.md deleted file mode 100644 index bf2697f03a..0000000000 --- a/docs/version-specific/supported-software/r/RheoTool.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# RheoTool - -RheoTool is an open-source toolbox based on OpenFOAM to simulate Generalized Newtonian Fluids (GNF) and viscoelastic fluids under pressure-driven and/or electrically-driven flows. - -*homepage*: - -version | toolchain ---------|---------- -``5.0`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/Rmath.md b/docs/version-specific/supported-software/r/Rmath.md index 3bf85381c5..5aab723200 100644 --- a/docs/version-specific/supported-software/r/Rmath.md +++ b/docs/version-specific/supported-software/r/Rmath.md @@ -10,8 +10,8 @@ Rmath is the standalone version of the R math library. Rmath can be used in you version | toolchain --------|---------- -``3.3.1`` | ``intel/2016b`` ``4.0.4`` | ``foss/2020b`` +``4.3.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/RnBeads.md b/docs/version-specific/supported-software/r/RnBeads.md index 8c679a0f0e..d89f15fa5d 100644 --- a/docs/version-specific/supported-software/r/RnBeads.md +++ b/docs/version-specific/supported-software/r/RnBeads.md @@ -11,7 +11,6 @@ RnBeads is an R package for comprehensive analysis of DNA methylation data obtai version | versionsuffix | toolchain --------|---------------|---------- ``2.14.0`` | ``-R-4.2.1`` | ``foss/2022a`` -``2.6.0`` | ``-R-4.0.0`` | ``foss/2020a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/Roary.md b/docs/version-specific/supported-software/r/Roary.md index 5bec664c87..9e24d80195 100644 --- a/docs/version-specific/supported-software/r/Roary.md +++ b/docs/version-specific/supported-software/r/Roary.md @@ -8,13 +8,10 @@ Rapid large-scale prokaryote pan genome analysis *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.12.0`` | ``-Perl-5.26.1`` | ``intel/2018a`` -``3.12.0`` | | ``system`` -``3.13.0`` | | ``foss/2020a`` -``3.13.0`` | | ``foss/2021a`` -``3.13.0`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``3.13.0`` | ``foss/2021a`` +``3.13.0`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/Rosetta.md b/docs/version-specific/supported-software/r/Rosetta.md deleted file mode 100644 index af20e25aa2..0000000000 --- a/docs/version-specific/supported-software/r/Rosetta.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Rosetta - -Rosetta is the premier software suite for modeling macromolecular structures. As a flexible, multi-purpose application, it includes tools for structure prediction, design, and remodeling of proteins and nucleic acids. - -*homepage*: - -version | toolchain ---------|---------- -``2016.13.58602`` | ``foss/2016a`` -``2016.46.59086`` | ``foss/2016b`` -``3.7`` | ``foss/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/Rtree.md b/docs/version-specific/supported-software/r/Rtree.md index 4eb66fc0e1..72c0533608 100644 --- a/docs/version-specific/supported-software/r/Rtree.md +++ b/docs/version-specific/supported-software/r/Rtree.md @@ -8,11 +8,11 @@ Rtree is a ctypes Python wrapper of libspatialindex that provides a number of ad *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.8.3`` | ``-Python-2.7.14`` | ``intel/2018a`` -``1.0.1`` | | ``GCCcore/12.2.0`` -``1.2.0`` | | ``GCCcore/12.3.0`` +version | toolchain +--------|---------- +``1.0.1`` | ``GCCcore/12.2.0`` +``1.2.0`` | ``GCCcore/12.3.0`` +``1.2.0`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/Ruby-Tk.md b/docs/version-specific/supported-software/r/Ruby-Tk.md deleted file mode 100644 index e4ab7afbc8..0000000000 --- a/docs/version-specific/supported-software/r/Ruby-Tk.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Ruby-Tk - -Ruby Tk interface module using tcltklib - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.2.0`` | ``-Ruby-2.5.1`` | ``foss/2018a`` -``0.2.0`` | ``-Ruby-2.5.1`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/Ruby.md b/docs/version-specific/supported-software/r/Ruby.md index e8d22578c6..164cd7cb27 100644 --- a/docs/version-specific/supported-software/r/Ruby.md +++ b/docs/version-specific/supported-software/r/Ruby.md @@ -4,31 +4,17 @@ search: --- # Ruby -Ruby is a dynamic, open source programming language with a focus on simplicity and productivity. It has an elegant syntax that is natural to read and easy to write. +Ruby is a dynamic, open source programming language with a focus on simplicity and productivity. It has an elegant syntax that is natural to read and easy to write. *homepage*: version | toolchain --------|---------- -``2.1.6`` | ``system`` -``2.3.1`` | ``intel/2016b`` -``2.3.1`` | ``system`` -``2.3.3`` | ``system`` -``2.3.4`` | ``system`` -``2.4.2`` | ``foss/2017b`` -``2.5.0`` | ``foss/2018a`` -``2.5.0`` | ``intel/2017a`` -``2.5.0`` | ``intel/2017b`` -``2.5.1`` | ``foss/2018a`` -``2.5.1`` | ``intel/2018a`` -``2.6.1`` | ``GCCcore/7.3.0`` -``2.6.3`` | ``GCCcore/8.2.0`` -``2.7.1`` | ``GCCcore/8.3.0`` ``2.7.2`` | ``GCCcore/10.2.0`` -``2.7.2`` | ``GCCcore/9.3.0`` ``3.0.1`` | ``GCCcore/10.3.0`` ``3.0.1`` | ``GCCcore/11.2.0`` ``3.0.3`` | ``GCCcore/11.3.0`` +``3.0.3`` | ``GCCcore/12.3.0`` ``3.0.5`` | ``GCCcore/11.3.0`` ``3.2.2`` | ``GCCcore/12.2.0`` ``3.3.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/r/Rust.md b/docs/version-specific/supported-software/r/Rust.md index b060ab4cf6..b2ad6ef833 100644 --- a/docs/version-specific/supported-software/r/Rust.md +++ b/docs/version-specific/supported-software/r/Rust.md @@ -10,19 +10,6 @@ Rust is a systems programming language that runs blazingly fast, prevents segfau version | toolchain --------|---------- -``1.12.0`` | ``foss/2016b`` -``1.12.1`` | ``foss/2016b`` -``1.18.0`` | ``foss/2017a`` -``1.21.0`` | ``foss/2017b`` -``1.22.1`` | ``GCCcore/6.4.0`` -``1.29.2`` | ``GCCcore/7.3.0`` -``1.30.1`` | ``GCCcore/6.4.0`` -``1.35.0`` | ``GCCcore/8.2.0`` -``1.37.0`` | ``GCCcore/8.3.0`` -``1.42.0`` | ``GCCcore/7.3.0`` -``1.42.0`` | ``GCCcore/8.2.0`` -``1.42.0`` | ``GCCcore/8.3.0`` -``1.42.0`` | ``GCCcore/9.3.0`` ``1.52.1`` | ``GCCcore/10.2.0`` ``1.52.1`` | ``GCCcore/10.3.0`` ``1.54.0`` | ``GCCcore/11.2.0`` @@ -38,7 +25,8 @@ version | toolchain ``1.76.0`` | ``GCCcore/13.2.0`` ``1.78.0`` | ``GCCcore/13.3.0`` ``1.79.0`` | ``GCCcore/13.3.0`` -``1.8.0`` | ``foss/2016a`` +``1.81.0`` | ``GCCcore/13.3.0`` +``1.83.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/index.md b/docs/version-specific/supported-software/r/index.md index 8787fa2e34..cc02651563 100644 --- a/docs/version-specific/supported-software/r/index.md +++ b/docs/version-specific/supported-software/r/index.md @@ -14,27 +14,21 @@ search: * [R-INLA](R-INLA.md) * [R-keras](R-keras.md) * [R-MXM](R-MXM.md) - * [R-opencv](R-opencv.md) * [R-tesseract](R-tesseract.md) * [R-transport](R-transport.md) * [R2jags](R2jags.md) * [Racon](Racon.md) * [radeontop](radeontop.md) * [radian](radian.md) - * [RaGOO](RaGOO.md) * [Ragout](Ragout.md) * [RagTag](RagTag.md) * [rampart](rampart.md) - * [randfold](randfold.md) - * [randrproto](randrproto.md) * [rankwidth](rankwidth.md) * [rapidcsv](rapidcsv.md) * [RapidJSON](RapidJSON.md) * [rapidNJ](rapidNJ.md) - * [rapidtide](rapidtide.md) - * [RAPSearch2](RAPSearch2.md) + * [RAPIDS](RAPIDS.md) * [Raptor](Raptor.md) - * [Rascaf](Rascaf.md) * [RASPA2](RASPA2.md) * [Rasqal](Rasqal.md) * [rasterio](rasterio.md) @@ -43,61 +37,46 @@ search: * [Raven](Raven.md) * [RAxML](RAxML.md) * [RAxML-NG](RAxML-NG.md) - * [Ray-assembler](Ray-assembler.md) * [Ray-project](Ray-project.md) * [Raysect](Raysect.md) - * [RBFOpt](RBFOpt.md) * [RCall](RCall.md) * [rclone](rclone.md) - * [Rcorrector](Rcorrector.md) * [RcppGSL](RcppGSL.md) - * [rCUDA](rCUDA.md) * [RDFlib](RDFlib.md) * [RDKit](RDKit.md) + * [rDock](rDock.md) * [RDP-Classifier](RDP-Classifier.md) * [RE2](RE2.md) * [re2c](re2c.md) - * [Reads2snp](Reads2snp.md) - * [Reapr](Reapr.md) + * [read2tree](read2tree.md) * [ReaxFF](ReaxFF.md) * [RECON](RECON.md) - * [Red](Red.md) * [Redis](Redis.md) * [redis-py](redis-py.md) * [Redland](Redland.md) - * [Redundans](Redundans.md) * [ReFrame](ReFrame.md) * [Regenie](Regenie.md) * [regionmask](regionmask.md) * [RegTools](RegTools.md) * [Relate](Relate.md) - * [RELION](RELION.md) * [remake](remake.md) - * [ReMatCh](ReMatCh.md) - * [REMORA](REMORA.md) - * [renderproto](renderproto.md) - * [RepastHPC](RepastHPC.md) * [RepeatMasker](RepeatMasker.md) * [RepeatModeler](RepeatModeler.md) * [RepeatScout](RepeatScout.md) * [request](request.md) - * [requests](requests.md) - * [RERconverge](RERconverge.md) * [ResistanceGA](ResistanceGA.md) * [resolos](resolos.md) * [Restrander](Restrander.md) * [rethinking](rethinking.md) * [retworkx](retworkx.md) * [RevBayes](RevBayes.md) + * [REViewer](REViewer.md) * [RFdiffusion](RFdiffusion.md) * [rgdal](rgdal.md) * [rgeos](rgeos.md) * [Rgurobi](Rgurobi.md) - * [rhdf5](rhdf5.md) * [RHEIA](RHEIA.md) - * [RheoTool](RheoTool.md) * [Rhodium](Rhodium.md) - * [rickflow](rickflow.md) * [RInChI](RInChI.md) * [rioxarray](rioxarray.md) * [ripunzip](ripunzip.md) @@ -112,13 +91,8 @@ search: * [RMBlast](RMBlast.md) * [RNA-Bloom](RNA-Bloom.md) * [RNA-SeQC](RNA-SeQC.md) - * [RNAclust](RNAclust.md) - * [RNAcode](RNAcode.md) - * [RNAIndel](RNAIndel.md) - * [RNAmmer](RNAmmer.md) * [rnamotif](rnamotif.md) * [rnaQUAST](rnaQUAST.md) - * [RNAz](RNAz.md) * [RnBeads](RnBeads.md) * [Roary](Roary.md) * [ROCm](ROCm.md) @@ -128,26 +102,17 @@ search: * [rocminfo](rocminfo.md) * [ROCR-Runtime](ROCR-Runtime.md) * [ROCT-Thunk-Interface](ROCT-Thunk-Interface.md) - * [ROI_PAC](ROI_PAC.md) - * [ROME](ROME.md) * [ROOT](ROOT.md) - * [root_numpy](root_numpy.md) - * [rootpy](rootpy.md) - * [Rosetta](Rosetta.md) * [rpmrebuild](rpmrebuild.md) * [RPostgreSQL](RPostgreSQL.md) * [rpy2](rpy2.md) - * [RQGIS3](RQGIS3.md) * [RSEM](RSEM.md) * [RSeQC](RSeQC.md) - * [RStan](RStan.md) - * [rstanarm](rstanarm.md) * [RStudio-Server](RStudio-Server.md) * [RTG-Tools](RTG-Tools.md) * [Rtree](Rtree.md) * [ruamel.yaml](ruamel.yaml.md) * [Ruby](Ruby.md) - * [Ruby-Tk](Ruby-Tk.md) * [ruffus](ruffus.md) * [ruptures](ruptures.md) * [Rust](Rust.md) diff --git a/docs/version-specific/supported-software/r/rCUDA.md b/docs/version-specific/supported-software/r/rCUDA.md deleted file mode 100644 index 540aaf3584..0000000000 --- a/docs/version-specific/supported-software/r/rCUDA.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# rCUDA - -The rCUDA Framework enables the concurrent usage of CUDA-compatible devices remotely. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``4.0.1`` | ``_linux_64_Ubuntu10.04`` | ``system`` -``5.0`` | ``_linux_64_scientificLinux6`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/rDock.md b/docs/version-specific/supported-software/r/rDock.md new file mode 100644 index 0000000000..6cfa6c8ee3 --- /dev/null +++ b/docs/version-specific/supported-software/r/rDock.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# rDock + +rDock is a fast and versatile Open Source docking program that can be used to dock small molecules against proteins and nucleic acids. It is designed for High Throughput Virtual Screening (HTVS) campaigns and Binding Mode prediction studies. + +*homepage*: + +version | toolchain +--------|---------- +``24.03.192`` | ``GCCcore/13.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/r/rampart.md b/docs/version-specific/supported-software/r/rampart.md index 0443bc6f51..1da63a3d75 100644 --- a/docs/version-specific/supported-software/r/rampart.md +++ b/docs/version-specific/supported-software/r/rampart.md @@ -8,10 +8,9 @@ Read Assignment, Mapping, and Phylogenetic Analysis in Real Time. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.0`` | | ``foss/2020b`` -``1.2.0rc3`` | ``-Python-3.6.6`` | ``foss/2018b`` +version | toolchain +--------|---------- +``1.2.0`` | ``foss/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/randfold.md b/docs/version-specific/supported-software/r/randfold.md deleted file mode 100644 index 03df69da52..0000000000 --- a/docs/version-specific/supported-software/r/randfold.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# randfold - -Minimum free energy of folding randomization test software - -*homepage*: - -version | toolchain ---------|---------- -``2.0.1`` | ``foss/2018b`` -``2.0.1`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/randrproto.md b/docs/version-specific/supported-software/r/randrproto.md deleted file mode 100644 index 476554c942..0000000000 --- a/docs/version-specific/supported-software/r/randrproto.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# randrproto - -Xrandr protocol and ancillary headers - -*homepage*: - -version | toolchain ---------|---------- -``1.5.0`` | ``foss/2016a`` -``1.5.0`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/rapidNJ.md b/docs/version-specific/supported-software/r/rapidNJ.md index 753c4a82ec..4c332235a1 100644 --- a/docs/version-specific/supported-software/r/rapidNJ.md +++ b/docs/version-specific/supported-software/r/rapidNJ.md @@ -4,7 +4,7 @@ search: --- # rapidNJ -RapidNJ is an algorithmic engineered implementation of canonical neighbour-joining. It uses an efficient search heuristic to speed-up the core computations of the neighbour-joining method that enables RapidNJ to outperform other state-of-the-art neighbour-joining implementations. +RapidNJ is an algorithmic engineered implementation of canonical neighbour-joining. It uses an efficient search heuristic to speed-up the core computations of the neighbour-joining method that enables RapidNJ to outperform other state-of-the-art neighbour-joining implementations. *homepage*: @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``2.3.3`` | ``GCCcore/11.3.0`` ``2.3.3`` | ``GCCcore/12.2.0`` +``2.3.3`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/rapidcsv.md b/docs/version-specific/supported-software/r/rapidcsv.md index 7bcb9aae05..c5cf5096e1 100644 --- a/docs/version-specific/supported-software/r/rapidcsv.md +++ b/docs/version-specific/supported-software/r/rapidcsv.md @@ -4,7 +4,7 @@ search: --- # rapidcsv -Rapidcsv is a C++ header-only library for CSV parsing. While the name admittedly was inspired by the rapidjson project, the objectives are not the same. The goal of rapidcsv is to be an easy-to-use CSV library enabling rapid development. For optimal performance (be it CPU or memory usage) a CSV parser implemented for the specific use-case is likely to be more performant. +Rapidcsv is a C++ header-only library for CSV parsing. While the name admittedly was inspired by the rapidjson project, the objectives are not the same. The goal of rapidcsv is to be an easy-to-use CSV library enabling rapid development. For optimal performance (be it CPU or memory usage) a CSV parser implemented for the specific use-case is likely to be more performant. *homepage*: diff --git a/docs/version-specific/supported-software/r/rapidtide.md b/docs/version-specific/supported-software/r/rapidtide.md deleted file mode 100644 index 624dba1a23..0000000000 --- a/docs/version-specific/supported-software/r/rapidtide.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# rapidtide - -Rapidtide is a suite of python programs used to perform time delay analysis on functional imaging data to find time lagged correlations between the voxelwise time series and other time series. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.8.0`` | ``-Python-3.7.2`` | ``intel/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/rasterio.md b/docs/version-specific/supported-software/r/rasterio.md index 85f47ff900..88c2bcceaf 100644 --- a/docs/version-specific/supported-software/r/rasterio.md +++ b/docs/version-specific/supported-software/r/rasterio.md @@ -8,14 +8,13 @@ Rasterio reads and writes geospatial raster data. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.7`` | ``-Python-3.8.2`` | ``foss/2020a`` -``1.2.10`` | | ``foss/2021b`` -``1.2.3`` | | ``foss/2020b`` -``1.3.4`` | | ``foss/2022a`` -``1.3.8`` | | ``foss/2022b`` -``1.3.9`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``1.2.10`` | ``foss/2021b`` +``1.2.3`` | ``foss/2020b`` +``1.3.4`` | ``foss/2022a`` +``1.3.8`` | ``foss/2022b`` +``1.3.9`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/rasterstats.md b/docs/version-specific/supported-software/r/rasterstats.md index c145ee2cc4..f7854c1802 100644 --- a/docs/version-specific/supported-software/r/rasterstats.md +++ b/docs/version-specific/supported-software/r/rasterstats.md @@ -8,10 +8,9 @@ rasterstats is a Python module for summarizing geospatial raster datasets based *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.15.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``0.19.0`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``0.19.0`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/rclone.md b/docs/version-specific/supported-software/r/rclone.md index e989f103a0..95744a01df 100644 --- a/docs/version-specific/supported-software/r/rclone.md +++ b/docs/version-specific/supported-software/r/rclone.md @@ -10,13 +10,13 @@ Rclone is a command line program to sync files and directories to and from a va version | versionsuffix | toolchain --------|---------------|---------- -``1.42`` | ``-amd64`` | ``system`` ``1.54.1`` | ``-amd64`` | ``system`` ``1.56.0`` | ``-amd64`` | ``system`` ``1.57.0`` | | ``system`` ``1.63.1`` | ``-amd64`` | ``system`` ``1.65.2`` | | ``system`` ``1.66.0`` | | ``system`` +``1.68.1`` | | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/re2c.md b/docs/version-specific/supported-software/r/re2c.md index 84628f7451..713a101c5c 100644 --- a/docs/version-specific/supported-software/r/re2c.md +++ b/docs/version-specific/supported-software/r/re2c.md @@ -6,13 +6,10 @@ search: re2c is a free and open-source lexer generator for C and C++. Its main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.1.1`` | ``GCCcore/8.2.0`` -``1.2.1`` | ``GCCcore/8.3.0`` -``1.3`` | ``GCCcore/9.3.0`` ``2.0.3`` | ``GCCcore/10.2.0`` ``2.1.1`` | ``GCCcore/10.3.0`` ``2.2`` | ``GCCcore/11.2.0`` @@ -20,6 +17,7 @@ version | toolchain ``3.0`` | ``GCCcore/12.2.0`` ``3.1`` | ``GCCcore/12.3.0`` ``3.1`` | ``GCCcore/13.2.0`` +``3.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/read2tree.md b/docs/version-specific/supported-software/r/read2tree.md new file mode 100644 index 0000000000..bc8e3989dd --- /dev/null +++ b/docs/version-specific/supported-software/r/read2tree.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# read2tree + +read2tree is a software tool that allows to obtain alignment matrices for tree inference. For this purpose it makes use of the OMA database and a set of reads. Its strength lies in the fact that it bipasses the several standard steps when obtaining such a matrix in regular analysis. These steps are read filtereing, assembly, gene prediction, gene annotation, all vs all comparison, orthology prediction, alignment and concatination. + +*homepage*: + +version | toolchain +--------|---------- +``0.1.5`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/r/redis-py.md b/docs/version-specific/supported-software/r/redis-py.md index 474d0e16af..c706705f8f 100644 --- a/docs/version-specific/supported-software/r/redis-py.md +++ b/docs/version-specific/supported-software/r/redis-py.md @@ -13,8 +13,10 @@ version | toolchain ``4.3.1`` | ``foss/2021a`` ``4.3.3`` | ``foss/2021b`` ``4.5.1`` | ``foss/2022a`` +``5.0.1`` | ``GCCcore/12.2.0`` ``5.0.1`` | ``GCCcore/12.3.0`` ``5.0.9`` | ``GCCcore/13.2.0`` +``5.1.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/regionmask.md b/docs/version-specific/supported-software/r/regionmask.md index c1c9378a0c..6cd2965bb7 100644 --- a/docs/version-specific/supported-software/r/regionmask.md +++ b/docs/version-specific/supported-software/r/regionmask.md @@ -8,13 +8,12 @@ regionmask creates masks of geographical regions. It determines to which geograp *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.0`` | | ``foss/2022b`` -``0.12.1`` | | ``foss/2023a`` -``0.9.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``0.9.0`` | | ``foss/2021b`` -``0.9.0`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``0.10.0`` | ``foss/2022b`` +``0.12.1`` | ``foss/2023a`` +``0.9.0`` | ``foss/2021b`` +``0.9.0`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/renderproto.md b/docs/version-specific/supported-software/r/renderproto.md deleted file mode 100644 index cf3824d9f9..0000000000 --- a/docs/version-specific/supported-software/r/renderproto.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# renderproto - -Xrender protocol and ancillary headers - -*homepage*: - -version | toolchain ---------|---------- -``0.11`` | ``foss/2016a`` -``0.11`` | ``gimkl/2.11.5`` -``0.11`` | ``intel/2016a`` -``0.11`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/request.md b/docs/version-specific/supported-software/r/request.md index 8e1bf9af60..2587830ebe 100644 --- a/docs/version-specific/supported-software/r/request.md +++ b/docs/version-specific/supported-software/r/request.md @@ -4,7 +4,7 @@ search: --- # request -Request is designed to be the simplest way possible to make http calls. It supports HTTPS and follows redirects by default. +Request is designed to be the simplest way possible to make http calls. It supports HTTPS and follows redirects by default. *homepage*: diff --git a/docs/version-specific/supported-software/r/requests.md b/docs/version-specific/supported-software/r/requests.md deleted file mode 100644 index b697f44594..0000000000 --- a/docs/version-specific/supported-software/r/requests.md +++ /dev/null @@ -1,22 +0,0 @@ ---- -search: - boost: 0.5 ---- -# requests - -Python http for humans - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.10.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``2.10.0`` | ``-Python-3.5.1`` | ``foss/2016a`` -``2.11.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``2.11.1`` | ``-Python-3.5.2`` | ``intel/2016b`` -``2.13.0`` | ``-Python-2.7.12`` | ``foss/2016b`` -``2.13.0`` | ``-Python-2.7.12`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/resolos.md b/docs/version-specific/supported-software/r/resolos.md index 0875dd0f66..6ed3975bbd 100644 --- a/docs/version-specific/supported-software/r/resolos.md +++ b/docs/version-specific/supported-software/r/resolos.md @@ -4,7 +4,7 @@ search: --- # resolos -Resolos is a toolkit written in Python for maintaining reproducible environments for scientific computations. It's main goal is to enable researchers to easily replicate environments through space (running code on HPC environment) and time (environment preservation for long term archival). For installation and detailed usage, check out the documentation. +Resolos is a toolkit written in Python for maintaining reproducible environments for scientific computations. It's main goal is to enable researchers to easily replicate environments through space (running code on HPC environment) and time (environment preservation for long term archival). For installation and detailed usage, check out the documentation. *homepage*: diff --git a/docs/version-specific/supported-software/r/rgdal.md b/docs/version-specific/supported-software/r/rgdal.md index 06f9b310fb..e34b8a876f 100644 --- a/docs/version-specific/supported-software/r/rgdal.md +++ b/docs/version-specific/supported-software/r/rgdal.md @@ -6,14 +6,10 @@ search: Provides bindings to the 'Geospatial' Data Abstraction Library ('GDAL') (>= 1.11.4 and <= 2.5.0) and access to projection/transformation operations from the 'PROJ.4' library. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.4-4`` | ``-R-3.6.0`` | ``foss/2019a`` -``1.4-8`` | ``-R-3.6.2`` | ``foss/2019b`` -``1.4-8`` | ``-R-4.0.0`` | ``foss/2020a`` -``1.5-16`` | ``-R-4.0.0`` | ``foss/2020a`` ``1.5-23`` | ``-R-4.0.4`` | ``foss/2020b`` ``1.5-23`` | ``-R-4.1.0`` | ``foss/2021a`` ``1.6-6`` | | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/r/rgeos.md b/docs/version-specific/supported-software/r/rgeos.md index 4de3d4d36f..6b32ef69cd 100644 --- a/docs/version-specific/supported-software/r/rgeos.md +++ b/docs/version-specific/supported-software/r/rgeos.md @@ -10,10 +10,6 @@ R interface to Geometry Engine - Open Source (GEOS) using the C API for topology version | versionsuffix | toolchain --------|---------------|---------- -``0.3-17`` | ``-R-3.2.3`` | ``intel/2016a`` -``0.5-1`` | ``-R-3.6.0`` | ``foss/2019a`` -``0.5-2`` | ``-R-3.6.2`` | ``foss/2019b`` -``0.5-5`` | ``-R-4.0.0`` | ``foss/2020a`` ``0.5-5`` | ``-R-4.1.0`` | ``foss/2021a`` diff --git a/docs/version-specific/supported-software/r/rhdf5.md b/docs/version-specific/supported-software/r/rhdf5.md deleted file mode 100644 index b123ac14aa..0000000000 --- a/docs/version-specific/supported-software/r/rhdf5.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# rhdf5 - -This R/Bioconductor package provides an interface between HDF5 and R. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.16.0`` | ``-R-3.2.3`` | ``intel/2016a`` -``2.18.0`` | ``-R-3.3.1`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/rickflow.md b/docs/version-specific/supported-software/r/rickflow.md deleted file mode 100644 index 9a18a968f3..0000000000 --- a/docs/version-specific/supported-software/r/rickflow.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# rickflow - -Running and Analyzing OpenMM Jobs - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.7.0-20200529`` | ``-Python-3.7.4`` | ``intel/2019b`` -``0.7.0`` | ``-Python-3.7.4`` | ``intel/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/rioxarray.md b/docs/version-specific/supported-software/r/rioxarray.md index cb9641f488..7d747993d7 100644 --- a/docs/version-specific/supported-software/r/rioxarray.md +++ b/docs/version-specific/supported-software/r/rioxarray.md @@ -8,14 +8,11 @@ geospatial xarray extension powered by rasterio *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.0.12`` | ``-Python-3.7.2`` | ``intel/2019a`` -``0.0.24`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.1.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``0.11.1`` | | ``foss/2021b`` -``0.14.0`` | | ``foss/2022a`` -``0.15.0`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``0.11.1`` | ``foss/2021b`` +``0.14.0`` | ``foss/2022a`` +``0.15.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/rjags.md b/docs/version-specific/supported-software/r/rjags.md index 5618f18d3e..4367055cdb 100644 --- a/docs/version-specific/supported-software/r/rjags.md +++ b/docs/version-specific/supported-software/r/rjags.md @@ -10,8 +10,6 @@ The rjags package is an interface to the JAGS library. version | versionsuffix | toolchain --------|---------------|---------- -``4-10`` | | ``foss/2019b`` -``4-10`` | ``-R-4.0.0`` | ``foss/2020a`` ``4-10`` | ``-R-4.0.3`` | ``foss/2020b`` ``4-10`` | ``-R-4.0.4`` | ``foss/2020b`` ``4-10`` | ``-R-4.0.5`` | ``foss/2020b`` @@ -23,10 +21,6 @@ version | versionsuffix | toolchain ``4-13`` | ``-R-4.2.1`` | ``foss/2022a`` ``4-13`` | ``-R-4.2.2`` | ``foss/2022b`` ``4-15`` | ``-R-4.3.2`` | ``foss/2023a`` -``4-6`` | ``-R-3.4.0`` | ``intel/2017a`` -``4-6`` | ``-R-3.4.3`` | ``intel/2017b`` -``4-8`` | ``-R-3.5.1`` | ``foss/2018b`` -``4-9`` | ``-R-3.6.0`` | ``foss/2019a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/rnaQUAST.md b/docs/version-specific/supported-software/r/rnaQUAST.md index 5b612d5f2b..00c2e30ecb 100644 --- a/docs/version-specific/supported-software/r/rnaQUAST.md +++ b/docs/version-specific/supported-software/r/rnaQUAST.md @@ -8,11 +8,9 @@ rnaQUAST is a tool for evaluating RNA-Seq assemblies using reference genome and *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.5.2`` | ``-Python-2.7.15`` | ``foss/2018b`` -``2.2.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``2.2.2`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``2.2.2`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/root_numpy.md b/docs/version-specific/supported-software/r/root_numpy.md deleted file mode 100644 index 26dc8c45df..0000000000 --- a/docs/version-specific/supported-software/r/root_numpy.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# root_numpy - -root_numpy is a Python extension module that provides an efficient interface between ROOT and NumPy. root_numpy’s internals are compiled C++ and can therefore handle large amounts of data much faster than equivalent pure Python implementations. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``4.8.0`` | ``-Python-3.6.6`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/rootpy.md b/docs/version-specific/supported-software/r/rootpy.md deleted file mode 100644 index c714bd5673..0000000000 --- a/docs/version-specific/supported-software/r/rootpy.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# rootpy - -The rootpy project is a community-driven initiative aiming to provide a more pythonic interface with ROOT on top of the existing PyROOT bindings. Given Python’s reflective and dynamic nature, rootpy also aims to improve ROOT design flaws and supplement existing ROOT functionality. The scientific Python community also offers a multitude of powerful packages such as SciPy, NumPy, matplotlib, scikit-learn, and PyTables, but a suitable interface between them and ROOT has been lacking. rootpy provides the interfaces and conversion mechanisms required to liberate your data and to take advantage of these alternatives if needed. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.8.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``1.0.1`` | ``-Python-3.6.6`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/rpmrebuild.md b/docs/version-specific/supported-software/r/rpmrebuild.md index 70d520bce7..f876edf30b 100644 --- a/docs/version-specific/supported-software/r/rpmrebuild.md +++ b/docs/version-specific/supported-software/r/rpmrebuild.md @@ -4,13 +4,12 @@ search: --- # rpmrebuild -rpmrebuild is a tool to build an RPM file from a package that has already been installed in a basic use +rpmrebuild is a tool to build an RPM file from a package that has already been installed in a basic use *homepage*: version | toolchain --------|---------- -``2.11`` | ``system`` ``2.18`` | ``system`` diff --git a/docs/version-specific/supported-software/r/rpy2.md b/docs/version-specific/supported-software/r/rpy2.md index 492a5f0e40..ab10b61876 100644 --- a/docs/version-specific/supported-software/r/rpy2.md +++ b/docs/version-specific/supported-software/r/rpy2.md @@ -4,18 +4,15 @@ search: --- # rpy2 -rpy2 is a redesign and rewrite of rpy. It is providing a low-level interface to R from Python, a proposed high-level interface, including wrappers to graphical libraries, as well as R-like structures and functions. +rpy2 is an interface to R running embedded in a Python process. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.7.9`` | ``-Python-2.7.12`` | ``foss/2016b`` -``2.8.2`` | ``-Python-2.7.13`` | ``intel/2017a`` -``3.2.6`` | ``-Python-3.7.4`` | ``foss/2019b`` -``3.4.5`` | | ``foss/2021a`` -``3.4.5`` | | ``foss/2021b`` -``3.5.15`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``3.4.5`` | ``foss/2021a`` +``3.4.5`` | ``foss/2021b`` +``3.5.15`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/rstanarm.md b/docs/version-specific/supported-software/r/rstanarm.md deleted file mode 100644 index e915c5fd0b..0000000000 --- a/docs/version-specific/supported-software/r/rstanarm.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# rstanarm - -Estimates previously compiled regression models using the 'rstan' package, which provides the R interface to the Stan C++ library for Bayesian estimation. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.19.3`` | ``-R-3.6.2`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/ruptures.md b/docs/version-specific/supported-software/r/ruptures.md index ade3789891..b5e2735d1f 100644 --- a/docs/version-specific/supported-software/r/ruptures.md +++ b/docs/version-specific/supported-software/r/ruptures.md @@ -4,7 +4,7 @@ search: --- # ruptures -ruptures is a Python library for off-line change point detection. This package provides methods for the analysis and segmentation of non-stationary signals. Implemented algorithms include exact and approximate detection for various parametric and non-parametric models. ruptures focuses on ease of use by providing a well-documented and consistent interface. In addition, thanks to its modular structure, different algorithms and models can be connected and extended within this package. +ruptures is a Python library for off-line change point detection. This package provides methods for the analysis and segmentation of non-stationary signals. Implemented algorithms include exact and approximate detection for various parametric and non-parametric models. ruptures focuses on ease of use by providing a well-documented and consistent interface. In addition, thanks to its modular structure, different algorithms and models can be connected and extended within this package. *homepage*: diff --git a/docs/version-specific/supported-software/r/rustworkx.md b/docs/version-specific/supported-software/r/rustworkx.md index ac723e4f8f..4e17cac6de 100644 --- a/docs/version-specific/supported-software/r/rustworkx.md +++ b/docs/version-specific/supported-software/r/rustworkx.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``0.12.1`` | ``foss/2022a`` ``0.12.1`` | ``foss/2023a`` +``0.15.1`` | ``gfbf/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/S-Lang.md b/docs/version-specific/supported-software/s/S-Lang.md deleted file mode 100644 index 50fca2d73f..0000000000 --- a/docs/version-specific/supported-software/s/S-Lang.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# S-Lang - -S-Lang is a multi-platform programmer's library designed to allow a developer to create robust multi-platform software. It provides facilities required by interactive applications such as display/screen management, keyboard input, keymaps, and so on. - -*homepage*: - -version | toolchain ---------|---------- -``2.3.0`` | ``GCC/4.9.2`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/S4.md b/docs/version-specific/supported-software/s/S4.md deleted file mode 100644 index d5c275b845..0000000000 --- a/docs/version-specific/supported-software/s/S4.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# S4 - -S4 stands for Stanford Stratified Structure Solver, a frequency domain code to solve the linear Maxwell’s equations in layered periodic structures. Internally, it uses Rigorous Coupled Wave Analysis (RCWA, also called the Fourier Modal Method (FMM)) and the S-matrix algorithm. - -*homepage*: - -version | toolchain ---------|---------- -``1.1.1-20180610`` | ``foss/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SAGE.md b/docs/version-specific/supported-software/s/SAGE.md deleted file mode 100644 index 9735c9b094..0000000000 --- a/docs/version-specific/supported-software/s/SAGE.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SAGE - -S.A.G.E. (Statistical Analysis for Genetic Epidemiology) is free software package containing programs for use in the genetic analysis of family, pedigree and individual data. - -*homepage*: - -version | toolchain ---------|---------- -``6.3`` | ``system`` -``6.4`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SALMON-TDDFT.md b/docs/version-specific/supported-software/s/SALMON-TDDFT.md deleted file mode 100644 index eb4eec86cd..0000000000 --- a/docs/version-specific/supported-software/s/SALMON-TDDFT.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SALMON-TDDFT - -SALMON is an open-source computer program for ab-initio quantum-mechanical calculations of electron dynamics at the nanoscale that takes place in various situations of light-matter interactions. It is based on time-dependent density functional theory, solving time-dependent Kohn-Sham equation in real time and real space with norm-conserving pseudopotentials. - -*homepage*: - -version | toolchain ---------|---------- -``1.2.1`` | ``foss/2018b`` -``1.2.1`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SALib.md b/docs/version-specific/supported-software/s/SALib.md deleted file mode 100644 index 7a48813895..0000000000 --- a/docs/version-specific/supported-software/s/SALib.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SALib - -Sensitivity Analysis Library in Python (Numpy). Contains Sobol, Morris, Fractional Factorial and FAST methods. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.3`` | ``-Python-2.7.14`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SAMtools.md b/docs/version-specific/supported-software/s/SAMtools.md index eef20363b8..598cda7dbd 100644 --- a/docs/version-specific/supported-software/s/SAMtools.md +++ b/docs/version-specific/supported-software/s/SAMtools.md @@ -4,73 +4,31 @@ search: --- # SAMtools -SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format. +SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1.17`` | | ``intel/2017a`` -``0.1.19`` | | ``GCC/10.3.0`` -``0.1.19`` | | ``foss/2016a`` -``0.1.19`` | | ``foss/2016b`` -``0.1.20`` | | ``GCC/12.3.0`` -``0.1.20`` | | ``GCC/8.3.0`` -``0.1.20`` | | ``foss/2018b`` -``0.1.20`` | | ``intel/2017a`` -``0.1.20`` | | ``intel/2017b`` -``0.1.20`` | | ``intel/2018a`` -``0.1.20`` | | ``intel/2018b`` -``0.1.20`` | | ``intel/2019b`` -``1.10`` | | ``GCC/8.2.0-2.31.1`` -``1.10`` | | ``GCC/8.3.0`` -``1.10`` | | ``GCC/9.3.0`` -``1.10`` | | ``iccifort/2019.5.281`` -``1.11`` | | ``GCC/10.2.0`` -``1.11`` | | ``GCC/9.3.0`` -``1.11`` | | ``iccifort/2020.4.304`` -``1.12`` | | ``GCC/10.2.0`` -``1.12`` | | ``GCC/10.3.0`` -``1.12`` | | ``GCC/9.3.0`` -``1.13`` | | ``GCC/10.3.0`` -``1.13`` | | ``GCC/11.3.0`` -``1.13`` | | ``GCC/12.3.0`` -``1.14`` | | ``GCC/11.2.0`` -``1.15`` | | ``GCC/11.2.0`` -``1.15.1`` | | ``GCC/11.2.0`` -``1.15.1`` | | ``GCC/11.3.0`` -``1.16.1`` | | ``GCC/11.2.0`` -``1.16.1`` | | ``GCC/11.3.0`` -``1.17`` | | ``GCC/12.2.0`` -``1.18`` | | ``GCC/12.3.0`` -``1.19.2`` | | ``GCC/13.2.0`` -``1.2`` | | ``foss/2016b`` -``1.3`` | | ``foss/2016a`` -``1.3`` | | ``intel/2016a`` -``1.3.1`` | | ``foss/2016a`` -``1.3.1`` | | ``foss/2016b`` -``1.3.1`` | | ``intel/2016a`` -``1.3.1`` | ``-HTSlib-1.3.2`` | ``intel/2016b`` -``1.3.1`` | | ``intel/2016b`` -``1.4`` | | ``foss/2016b`` -``1.4`` | | ``intel/2016b`` -``1.4`` | | ``intel/2017a`` -``1.4.1`` | | ``intel/2017a`` -``1.5`` | | ``foss/2016b`` -``1.5`` | | ``intel/2017a`` -``1.6`` | | ``GCC/6.4.0-2.28`` -``1.6`` | | ``foss/2017a`` -``1.6`` | | ``iccifort/2017.4.196-GCC-6.4.0-2.28`` -``1.6`` | | ``intel/2017b`` -``1.7`` | | ``foss/2018a`` -``1.7`` | | ``intel/2018a`` -``1.8`` | | ``intel/2018a`` -``1.9`` | | ``GCC/6.4.0-2.28`` -``1.9`` | | ``GCC/7.3.0-2.30`` -``1.9`` | | ``GCC/8.2.0-2.31.1`` -``1.9`` | | ``foss/2018b`` -``1.9`` | | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``1.9`` | | ``intel/2018b`` +version | toolchain +--------|---------- +``0.1.19`` | ``GCC/10.3.0`` +``0.1.20`` | ``GCC/12.3.0`` +``1.11`` | ``GCC/10.2.0`` +``1.11`` | ``iccifort/2020.4.304`` +``1.12`` | ``GCC/10.2.0`` +``1.12`` | ``GCC/10.3.0`` +``1.13`` | ``GCC/10.3.0`` +``1.13`` | ``GCC/11.3.0`` +``1.13`` | ``GCC/12.3.0`` +``1.14`` | ``GCC/11.2.0`` +``1.15`` | ``GCC/11.2.0`` +``1.15.1`` | ``GCC/11.2.0`` +``1.15.1`` | ``GCC/11.3.0`` +``1.16.1`` | ``GCC/11.2.0`` +``1.16.1`` | ``GCC/11.3.0`` +``1.17`` | ``GCC/12.2.0`` +``1.18`` | ``GCC/12.3.0`` +``1.19.2`` | ``GCC/13.2.0`` +``1.21`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SAS.md b/docs/version-specific/supported-software/s/SAS.md deleted file mode 100644 index 3336ad60ff..0000000000 --- a/docs/version-specific/supported-software/s/SAS.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SAS - -SAS is a software suite for advanced analytics, multivariate analyses, business intelligence, data management, and predictive analytics. - -*homepage*: - -version | toolchain ---------|---------- -``9.4`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SBCL.md b/docs/version-specific/supported-software/s/SBCL.md index d2b995affb..c4b7331cda 100644 --- a/docs/version-specific/supported-software/s/SBCL.md +++ b/docs/version-specific/supported-software/s/SBCL.md @@ -10,7 +10,6 @@ Steel Bank Common Lisp (SBCL) is a high performance Common Lisp compiler. It is version | toolchain --------|---------- -``2.0.9`` | ``GCCcore/9.3.0`` ``2.2.1`` | ``GCCcore/10.3.0`` ``2.3.11`` | ``GCCcore/11.3.0`` ``2.4.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/s/SCALCE.md b/docs/version-specific/supported-software/s/SCALCE.md deleted file mode 100644 index 4c8f209440..0000000000 --- a/docs/version-specific/supported-software/s/SCALCE.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SCALCE - -SCALCE [skeɪlz] is a FASTQ compression tool that uses locally consistet parsing to obtain better compression rate. SCALCE has been specifically designed for Illumina reads but it can handle other technologies (that generate base pair reads) if the read length is the same throughout the file. - -*homepage*: - -version | toolchain ---------|---------- -``2.7`` | ``GCC/4.8.2`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SCIPhI.md b/docs/version-specific/supported-software/s/SCIPhI.md deleted file mode 100644 index bed6160ef0..0000000000 --- a/docs/version-specific/supported-software/s/SCIPhI.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SCIPhI - -Single-cell mutation identification via phylogenetic inference (SCIPhI) is a new approach to mutation detection in individual tumor cells by leveraging the evolutionary relationship among cells. - -*homepage*: - -version | toolchain ---------|---------- -``0.1.3`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SCOOP.md b/docs/version-specific/supported-software/s/SCOOP.md deleted file mode 100644 index 1e399651d4..0000000000 --- a/docs/version-specific/supported-software/s/SCOOP.md +++ /dev/null @@ -1,21 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SCOOP - -SCOOP (Scalable COncurrent Operations in Python) is a distributed task module allowing concurrent parallel programming on various environments, from heterogeneous grids to supercomputers. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.6.2`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.7.1.1`` | | ``GCCcore/8.2.0`` -``0.7.1.1`` | ``-Python-2.7.11`` | ``intel/2016a`` -``0.7.1.1`` | ``-Python-3.5.1`` | ``intel/2016a`` -``0.7.1.1`` | ``-Python-2.7.14`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SCOTCH.md b/docs/version-specific/supported-software/s/SCOTCH.md index 5ecbdc33f7..255e597a69 100644 --- a/docs/version-specific/supported-software/s/SCOTCH.md +++ b/docs/version-specific/supported-software/s/SCOTCH.md @@ -6,31 +6,10 @@ search: Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``5.1.12b_esmumps`` | | ``foss/2017b`` -``6.0.4`` | | ``foss/2016a`` -``6.0.4`` | | ``foss/2016b`` -``6.0.4`` | ``-64bitint`` | ``foss/2017b`` -``6.0.4`` | | ``foss/2017b`` -``6.0.4`` | | ``gimkl/2.11.5`` -``6.0.4`` | | ``intel/2016a`` -``6.0.4`` | | ``intel/2016b`` -``6.0.4`` | | ``intel/2017a`` -``6.0.4`` | | ``intel/2017b`` -``6.0.4`` | | ``intel/2018a`` -``6.0.6`` | | ``foss/2018a`` -``6.0.6`` | | ``foss/2018b`` -``6.0.6`` | | ``gompi/2019a`` -``6.0.6`` | | ``iimpi/2019a`` -``6.0.6`` | | ``intel/2018a`` -``6.0.9`` | | ``gompi/2019b`` -``6.0.9`` | | ``gompi/2020a`` -``6.0.9`` | | ``iimpi/2019b`` -``6.0.9`` | | ``iimpi/2020a`` -``6.0.9`` | | ``iimpic/2019b`` ``6.1.0`` | | ``gompi/2020b`` ``6.1.0`` | | ``gompi/2021a`` ``6.1.0`` | | ``iimpi/2020b`` @@ -44,6 +23,7 @@ version | versionsuffix | toolchain ``7.0.3`` | | ``gompi/2023a`` ``7.0.4`` | | ``gompi/2023b`` ``7.0.4`` | | ``iimpi/2023b`` +``7.0.6`` | | ``gompi/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/bibtexparser.md b/docs/version-specific/supported-software/s/SCRIPro.md similarity index 82% rename from docs/version-specific/supported-software/b/bibtexparser.md rename to docs/version-specific/supported-software/s/SCRIPro.md index 0857405d16..b0a6428915 100644 --- a/docs/version-specific/supported-software/b/bibtexparser.md +++ b/docs/version-specific/supported-software/s/SCRIPro.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# bibtexparser +# SCRIPro -Bibtex parser in Python 2.7 and 3.x +SCRIPro, an extended framework of SCRIP that suits both single-cell and spatial multi-ome data -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.1.0`` | ``GCCcore/8.2.0`` +``1.0.18`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SCnorm.md b/docs/version-specific/supported-software/s/SCnorm.md deleted file mode 100644 index 38ef9dce59..0000000000 --- a/docs/version-specific/supported-software/s/SCnorm.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SCnorm - -This package implements SCnorm — a method to normalize single-cell RNA-seq data. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.99.7`` | ``-R-3.4.0`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SCons.md b/docs/version-specific/supported-software/s/SCons.md index 59be0be3e6..c17b45a734 100644 --- a/docs/version-specific/supported-software/s/SCons.md +++ b/docs/version-specific/supported-software/s/SCons.md @@ -6,42 +6,18 @@ search: SCons is a software construction tool. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.4.1`` | ``-Python-2.7.11`` | ``foss/2016a`` -``2.5.0`` | ``-Python-2.7.12`` | ``foss/2016b`` -``2.5.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``2.5.1`` | ``-Python-2.7.12`` | ``foss/2016b`` -``2.5.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``2.5.1`` | ``-Python-2.7.13`` | ``intel/2017a`` -``2.5.1`` | | ``intel/2017a`` -``3.0.1`` | ``-Python-2.7.15-bare`` | ``GCCcore/7.3.0`` -``3.0.1`` | ``-Python-2.7.14`` | ``foss/2017b`` -``3.0.1`` | ``-Python-3.6.3`` | ``foss/2017b`` -``3.0.1`` | ``-Python-2.7.14`` | ``foss/2018a`` -``3.0.1`` | ``-Python-3.6.4`` | ``foss/2018a`` -``3.0.1`` | ``-Python-2.7.15`` | ``foss/2018b`` -``3.0.1`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` -``3.0.1`` | ``-Python-2.7.14`` | ``intel/2017b`` -``3.0.1`` | ``-Python-3.6.3`` | ``intel/2017b`` -``3.0.1`` | ``-Python-2.7.14`` | ``intel/2018a`` -``3.0.1`` | ``-Python-3.6.4`` | ``intel/2018a`` -``3.0.1`` | ``-Python-2.7.14`` | ``iomkl/2018a`` -``3.0.4`` | ``-Python-2.7.15`` | ``foss/2018b`` -``3.0.5`` | ``-Python-2.7.15`` | ``GCCcore/8.2.0`` -``3.0.5`` | ``-Python-3.7.2`` | ``GCCcore/8.2.0`` -``3.0.5`` | | ``GCCcore/8.2.0`` -``3.1.1`` | | ``GCCcore/8.3.0`` -``3.1.2`` | | ``GCCcore/9.3.0`` -``4.0.1`` | | ``GCCcore/10.2.0`` -``4.1.0.post1`` | | ``GCCcore/10.2.0`` -``4.1.0.post1`` | | ``GCCcore/10.3.0`` -``4.2.0`` | | ``GCCcore/11.2.0`` -``4.4.0`` | | ``GCCcore/11.3.0`` -``4.5.2`` | | ``GCCcore/12.3.0`` -``4.6.0`` | | ``GCCcore/13.2.0`` +version | toolchain +--------|---------- +``4.0.1`` | ``GCCcore/10.2.0`` +``4.1.0.post1`` | ``GCCcore/10.2.0`` +``4.1.0.post1`` | ``GCCcore/10.3.0`` +``4.2.0`` | ``GCCcore/11.2.0`` +``4.4.0`` | ``GCCcore/11.3.0`` +``4.5.2`` | ``GCCcore/12.3.0`` +``4.6.0`` | ``GCCcore/13.2.0`` +``4.9.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SDCC.md b/docs/version-specific/supported-software/s/SDCC.md deleted file mode 100644 index 3b58660f82..0000000000 --- a/docs/version-specific/supported-software/s/SDCC.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SDCC - -SDCC is a retargettable, optimizing ANSI - C compiler suite that targets the Intel MCS51 based microprocessors (8031, 8032, 8051, 8052, etc.), Maxim (formerly Dallas) DS80C390 variants, Freescale (formerly Motorola) HC08 based (hc08, s08) and Zilog Z80 based MCUs (z80, z180, gbz80, Rabbit 2000/3000, Rabbit 3000A). Work is in progress on supporting the Microchip PIC16 and PIC18 targets. It can be retargeted for other microprocessors. - -*homepage*: - -version | toolchain ---------|---------- -``3.3.0`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SDL.md b/docs/version-specific/supported-software/s/SDL.md deleted file mode 100644 index 29bd0bf3d6..0000000000 --- a/docs/version-specific/supported-software/s/SDL.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SDL - -SDL: Simple DirectMedia Layer, a cross-platform multimedia library - -*homepage*: - -version | toolchain ---------|---------- -``1.2.15`` | ``GCCcore/6.4.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SDL2.md b/docs/version-specific/supported-software/s/SDL2.md index 07d5519776..97d57593a2 100644 --- a/docs/version-specific/supported-software/s/SDL2.md +++ b/docs/version-specific/supported-software/s/SDL2.md @@ -10,20 +10,10 @@ SDL: Simple DirectMedia Layer, a cross-platform multimedia library version | toolchain --------|---------- -``2.0.10`` | ``GCCcore/8.3.0`` ``2.0.14`` | ``GCCcore/10.2.0`` ``2.0.14`` | ``GCCcore/10.3.0`` ``2.0.20`` | ``GCCcore/11.2.0`` ``2.0.22`` | ``GCCcore/11.3.0`` -``2.0.4`` | ``intel/2016b`` -``2.0.8`` | ``GCCcore/6.4.0`` -``2.0.8`` | ``foss/2017b`` -``2.0.8`` | ``intel/2017b`` -``2.0.8`` | ``intel/2018a`` -``2.0.9`` | ``GCCcore/8.2.0`` -``2.0.9`` | ``foss/2018b`` -``2.0.9`` | ``fosscuda/2018b`` -``2.0.9`` | ``intel/2018b`` ``2.26.3`` | ``GCCcore/12.2.0`` ``2.28.2`` | ``GCCcore/12.3.0`` ``2.28.5`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/s/SDL2_image.md b/docs/version-specific/supported-software/s/SDL2_image.md index 3c41b4d44c..77585789da 100644 --- a/docs/version-specific/supported-software/s/SDL2_image.md +++ b/docs/version-specific/supported-software/s/SDL2_image.md @@ -4,13 +4,12 @@ search: --- # SDL2_image -SDL_image is an image file loading library. +This is a simple library to load images of various formats as SDL surfaces. It can load BMP, GIF, JPEG, LBM, PCX, PNG, PNM (PPM/PGM/PBM), QOI, TGA, XCF, XPM, and simple SVG format images. It can also load AVIF, JPEG-XL, TIFF, and WebP images, depending on build options (see the note below for details.) -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.0.3`` | ``GCCcore/6.4.0`` ``2.6.3`` | ``GCCcore/11.3.0`` ``2.8.2`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/s/SDL_image.md b/docs/version-specific/supported-software/s/SDL_image.md deleted file mode 100644 index 4311fb2f7e..0000000000 --- a/docs/version-specific/supported-software/s/SDL_image.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SDL_image - -SDL_image is an image file loading library. - -*homepage*: - -version | toolchain ---------|---------- -``1.2.12`` | ``GCCcore/6.4.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SDSL.md b/docs/version-specific/supported-software/s/SDSL.md deleted file mode 100644 index 5579a3a41d..0000000000 --- a/docs/version-specific/supported-software/s/SDSL.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SDSL - -The Succinct Data Structure Library (SDSL) is a powerful and flexible C++11 library implementing succinct data structures. - -*homepage*: - -version | toolchain ---------|---------- -``2.1.1-20191211`` | ``GCCcore/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SECAPR.md b/docs/version-specific/supported-software/s/SECAPR.md deleted file mode 100644 index 6134b6729d..0000000000 --- a/docs/version-specific/supported-software/s/SECAPR.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SECAPR - -SECAPR is a bioinformatics pipeline for the rapid and user-friendly processing of targeted enriched Illumina sequences, from raw reads to alignments - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.15`` | ``-Python-2.7.16`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SEPP.md b/docs/version-specific/supported-software/s/SEPP.md index dcd8ac5c0b..3a4781fcb6 100644 --- a/docs/version-specific/supported-software/s/SEPP.md +++ b/docs/version-specific/supported-software/s/SEPP.md @@ -8,15 +8,13 @@ SATe-enabled Phylogenetic Placement - addresses the problem of phylogenetic plac *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.3.10`` | ``-Python-3.7.4`` | ``foss/2019b`` -``4.3.10`` | ``-Python-3.8.2`` | ``foss/2020a`` -``4.4.0`` | | ``foss/2020b`` -``4.5.0`` | | ``foss/2021a`` -``4.5.1`` | | ``foss/2021b`` -``4.5.1`` | | ``foss/2022a`` -``4.5.1`` | | ``foss/2022b`` +version | toolchain +--------|---------- +``4.4.0`` | ``foss/2020b`` +``4.5.0`` | ``foss/2021a`` +``4.5.1`` | ``foss/2021b`` +``4.5.1`` | ``foss/2022a`` +``4.5.1`` | ``foss/2022b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SHAP.md b/docs/version-specific/supported-software/s/SHAP.md index b92da2e805..5676f42029 100644 --- a/docs/version-specific/supported-software/s/SHAP.md +++ b/docs/version-specific/supported-software/s/SHAP.md @@ -8,13 +8,13 @@ SHAP (SHapley Additive exPlanations) is a game theoretic approach to explain the *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.35.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.41.0`` | | ``foss/2022a`` -``0.42.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.42.1`` | | ``foss/2022a`` -``0.43.0`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``0.41.0`` | ``foss/2022a`` +``0.42.1`` | ``foss/2022a`` +``0.43.0`` | ``foss/2022b`` +``0.43.0`` | ``foss/2023a`` +``0.46.0`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SHAPEIT.md b/docs/version-specific/supported-software/s/SHAPEIT.md deleted file mode 100644 index ee3aebe221..0000000000 --- a/docs/version-specific/supported-software/s/SHAPEIT.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SHAPEIT - -SHAPEIT is a fast and accurate method for estimation of haplotypes (aka phasing) from genotype or sequencing data. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.r837`` | ``.GLIBCv2.12`` | ``system`` -``2.r904`` | ``.glibcv2.17`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SHAPEIT4.md b/docs/version-specific/supported-software/s/SHAPEIT4.md index a78d4407bb..0c0a6b2c15 100644 --- a/docs/version-specific/supported-software/s/SHAPEIT4.md +++ b/docs/version-specific/supported-software/s/SHAPEIT4.md @@ -10,9 +10,6 @@ SHAPEIT4 is a fast and accurate method for estimation of haplotypes (aka phasing version | toolchain --------|---------- -``4.1.3`` | ``foss/2019b`` -``4.2.0`` | ``foss/2019b`` -``4.2.0`` | ``foss/2020a`` ``4.2.0`` | ``foss/2020b`` ``4.2.2`` | ``foss/2020b`` ``4.2.2`` | ``foss/2021a`` diff --git a/docs/version-specific/supported-software/s/SHORE.md b/docs/version-specific/supported-software/s/SHORE.md deleted file mode 100644 index 6ef5b5bf3e..0000000000 --- a/docs/version-specific/supported-software/s/SHORE.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SHORE - -SHORE, for Short Read, is a mapping and analysis pipeline for short read data produced on the Illumina platform. - -*homepage*: - -version | toolchain ---------|---------- -``0.9.3`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SICER2.md b/docs/version-specific/supported-software/s/SICER2.md deleted file mode 100644 index bdf3b07e4b..0000000000 --- a/docs/version-specific/supported-software/s/SICER2.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SICER2 - -Redesigned and improved ChIP-seq broad peak calling tool SICER - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.3`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SIMPLE.md b/docs/version-specific/supported-software/s/SIMPLE.md index 6e460dd47b..d6599b4ac1 100644 --- a/docs/version-specific/supported-software/s/SIMPLE.md +++ b/docs/version-specific/supported-software/s/SIMPLE.md @@ -4,13 +4,12 @@ search: --- # SIMPLE -Single-particle IMage Processing Linux Engine is a program package for cryo-EM image processing, focusing on ab initio 3D reconstruction of low-symmetry single-particles. +Single-particle IMage Processing Linux Engine SIMPLE is an open-source software package for analysis of cryogenic transmission electron microscopy (cryo-EM) movies of single-particles (Single-Particle Analysis, SPA). -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.5`` | ``foss/2018a`` ``3.0.0`` | ``foss/2020b`` diff --git a/docs/version-specific/supported-software/s/SIONlib.md b/docs/version-specific/supported-software/s/SIONlib.md index e563ca0519..fa6cb4607a 100644 --- a/docs/version-specific/supported-software/s/SIONlib.md +++ b/docs/version-specific/supported-software/s/SIONlib.md @@ -4,21 +4,14 @@ search: --- # SIONlib -SIONlib is a scalable I/O library for parallel access to task-local files. The library not only supports writing and reading binary data to or from several thousands of processors into a single or a small number of physical files, but also provides global open and close functions to access SIONlib files in parallel. This package provides a stripped-down installation of SIONlib for use with performance tools (e.g., Score-P), with renamed symbols to avoid conflicts when an application using SIONlib itself is linked against a tool requiring a different SIONlib version. +SIONlib is a scalable I/O library for parallel access to task-local files. The library not only supports writing and reading binary data to or from several thousands of processors into a single or a small number of physical files, but also provides global open and close functions to access SIONlib files in parallel. This package provides a stripped-down installation of SIONlib for use with performance tools (e.g., Score-P), with renamed symbols to avoid conflicts when an application using SIONlib itself is linked against a tool requiring a different SIONlib version. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.6.1`` | ``-tools`` | ``foss/2016a`` -``1.6.1`` | | ``foss/2016a`` -``1.7.1`` | ``-tools`` | ``foss/2017a`` -``1.7.1`` | | ``foss/2017a`` -``1.7.4`` | ``-tools`` | ``GCCcore/8.2.0`` ``1.7.6`` | ``-tools`` | ``GCCcore/10.2.0`` ``1.7.6`` | ``-tools`` | ``GCCcore/10.3.0`` -``1.7.6`` | ``-tools`` | ``GCCcore/8.3.0`` -``1.7.6`` | ``-tools`` | ``GCCcore/9.3.0`` ``1.7.7`` | ``-tools`` | ``GCCcore/11.2.0`` ``1.7.7`` | ``-tools`` | ``GCCcore/11.3.0`` ``1.7.7`` | ``-tools`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/s/SIP.md b/docs/version-specific/supported-software/s/SIP.md index 93d73d9ffd..6fc4e4741e 100644 --- a/docs/version-specific/supported-software/s/SIP.md +++ b/docs/version-specific/supported-software/s/SIP.md @@ -8,24 +8,11 @@ SIP is a tool that makes it very easy to create Python bindings for C and C++ li *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.18`` | ``-Python-2.7.11`` | ``foss/2016a`` -``4.18`` | ``-Python-2.7.11`` | ``intel/2016a`` -``4.18.1`` | ``-Python-2.7.11`` | ``foss/2016a`` -``4.18.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``4.19`` | ``-Python-2.7.12`` | ``foss/2016b`` -``4.19`` | ``-Python-2.7.12`` | ``intel/2016b`` -``4.19.13`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` -``4.19.2`` | ``-Python-2.7.13`` | ``intel/2017a`` -``4.19.8`` | ``-Python-2.7.14`` | ``foss/2017b`` -``4.19.8`` | ``-Python-2.7.14`` | ``foss/2018a`` -``4.19.8`` | ``-Python-3.6.4`` | ``foss/2018a`` -``4.19.8`` | ``-Python-2.7.14`` | ``intel/2017b`` -``4.19.8`` | ``-Python-2.7.14`` | ``intel/2018a`` -``4.19.8`` | ``-Python-3.6.4`` | ``intel/2018a`` -``6.8.1`` | | ``GCCcore/12.3.0`` -``6.8.3`` | | ``GCCcore/13.2.0`` +version | toolchain +--------|---------- +``6.10.0`` | ``GCCcore/13.3.0`` +``6.8.1`` | ``GCCcore/12.3.0`` +``6.8.3`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SIRIUS.md b/docs/version-specific/supported-software/s/SIRIUS.md index bca622d080..23f9f6c7ee 100644 --- a/docs/version-specific/supported-software/s/SIRIUS.md +++ b/docs/version-specific/supported-software/s/SIRIUS.md @@ -4,7 +4,7 @@ search: --- # SIRIUS -SIRIUS is a domain specific library for electronic structure calculations. It implements pseudopotential plane wave (PP-PW) and full potential linearized augmented plane wave (FP-LAPW) methods. +SIRIUS is a domain specific library for electronic structure calculations. It implements pseudopotential plane wave (PP-PW) and full potential linearized augmented plane wave (FP-LAPW) methods. *homepage*: diff --git a/docs/version-specific/supported-software/s/SKESA.md b/docs/version-specific/supported-software/s/SKESA.md index 53b256220e..e4b8d02319 100644 --- a/docs/version-specific/supported-software/s/SKESA.md +++ b/docs/version-specific/supported-software/s/SKESA.md @@ -10,9 +10,9 @@ SKESA is a de-novo sequence read assembler for cultured single isolate genomes b version | versionsuffix | toolchain --------|---------------|---------- -``2.2`` | | ``foss/2018a`` -``2.3.0`` | | ``foss/2018b`` ``2.4.0`` | ``_saute.1.3.0_1`` | ``gompi/2021b`` +``2.4.0`` | ``_saute.1.3.0_2`` | ``gompi/2023b`` +``2.4.0`` | ``_saute.1.3.0_2`` | ``gompi/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SLATEC.md b/docs/version-specific/supported-software/s/SLATEC.md deleted file mode 100644 index 0eddcd8088..0000000000 --- a/docs/version-specific/supported-software/s/SLATEC.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SLATEC - -SLATEC Common Mathematical Library, a comprehensive software library containing over 1400 general purpose mathematical and statistical routines written in Fortran 77. - -*homepage*: - -version | toolchain ---------|---------- -``4.1`` | ``GCC/6.4.0-2.28`` -``4.1`` | ``GCC/8.3.0`` -``4.1`` | ``iccifort/2018.1.163-GCC-6.4.0-2.28`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SLEPc.md b/docs/version-specific/supported-software/s/SLEPc.md index d903b949d9..083a43eb2f 100644 --- a/docs/version-specific/supported-software/s/SLEPc.md +++ b/docs/version-specific/supported-software/s/SLEPc.md @@ -8,21 +8,13 @@ SLEPc (Scalable Library for Eigenvalue Problem Computations) is a software libra *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.11.0`` | | ``foss/2018b`` -``3.12.2`` | ``-Python-3.7.4`` | ``foss/2019b`` -``3.12.2`` | ``-Python-3.8.2`` | ``foss/2020a`` -``3.12.2`` | ``-Python-2.7.16`` | ``intel/2019b`` -``3.12.2`` | ``-Python-3.7.4`` | ``intel/2019b`` -``3.12.2`` | ``-Python-3.8.2`` | ``intel/2020a`` -``3.14.2`` | | ``foss/2020b`` -``3.15.1`` | | ``foss/2021a`` -``3.17.2`` | | ``foss/2022a`` -``3.18.2`` | | ``intel/2021b`` -``3.20.1`` | | ``foss/2023a`` -``3.8.3`` | | ``foss/2017b`` -``3.9.2`` | | ``foss/2018a`` +version | toolchain +--------|---------- +``3.14.2`` | ``foss/2020b`` +``3.15.1`` | ``foss/2021a`` +``3.17.2`` | ``foss/2022a`` +``3.18.2`` | ``intel/2021b`` +``3.20.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SLiM.md b/docs/version-specific/supported-software/s/SLiM.md index 093a1efbe6..867d14100f 100644 --- a/docs/version-specific/supported-software/s/SLiM.md +++ b/docs/version-specific/supported-software/s/SLiM.md @@ -10,7 +10,6 @@ SLiM is an evolutionary simulation framework that combines a powerful engine for version | toolchain --------|---------- -``3.4`` | ``GCC/9.3.0`` ``4.0`` | ``GCC/11.2.0`` ``4.0.1`` | ``GCC/11.3.0`` diff --git a/docs/version-specific/supported-software/s/SMARTdenovo.md b/docs/version-specific/supported-software/s/SMARTdenovo.md deleted file mode 100644 index 15eadf7f13..0000000000 --- a/docs/version-specific/supported-software/s/SMARTdenovo.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SMARTdenovo - -SMARTdenovo is a de novo assembler for PacBio and Oxford Nanopore (ONT) data. It produces an assembly from all-vs-all raw read alignments without an error correction stage. It also provides tools to generate accurate consensus sequences, though a platform dependent consensus polish tools (e.g. Quiver for PacBio or Nanopolish for ONT) are still required for higher accuracy. - -*homepage*: - -version | toolchain ---------|---------- -``20180219`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SMRT-Link.md b/docs/version-specific/supported-software/s/SMRT-Link.md index 8daabdb111..ca2e682695 100644 --- a/docs/version-specific/supported-software/s/SMRT-Link.md +++ b/docs/version-specific/supported-software/s/SMRT-Link.md @@ -11,8 +11,6 @@ PacBio's open-source SMRT Analysis software suite is designed for use with Singl version | versionsuffix | toolchain --------|---------------|---------- ``12.0.0.177059`` | ``-cli-tools-only`` | ``system`` -``5.1.0.26412`` | ``-cli-tools-only`` | ``system`` -``6.0.0.47841`` | ``-cli-tools-only`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SMV.md b/docs/version-specific/supported-software/s/SMV.md index 9b3356ae1a..01e0e74436 100644 --- a/docs/version-specific/supported-software/s/SMV.md +++ b/docs/version-specific/supported-software/s/SMV.md @@ -11,6 +11,7 @@ Smokeview is a visualization program that displays output of FDS and CFAST simul version | toolchain --------|---------- ``6.7.17`` | ``iccifort/2020.4.304`` +``6.9.5`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SNAP-HMM.md b/docs/version-specific/supported-software/s/SNAP-HMM.md index 70cdd6fbdd..6fadb89e20 100644 --- a/docs/version-specific/supported-software/s/SNAP-HMM.md +++ b/docs/version-specific/supported-software/s/SNAP-HMM.md @@ -4,17 +4,15 @@ search: --- # SNAP-HMM -SNAP is a general purpose gene finding program suitable for both eukaryotic and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid Parser. +SNAP is a general purpose gene finding program suitable for both eukaryotic and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid Parser. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2013-11-29`` | ``GCC/6.4.0-2.28`` -``2013-11-29`` | ``GCC/8.3.0`` -``2013-11-29`` | ``iccifort/2017.4.196-GCC-6.4.0-2.28`` ``20190603`` | ``GCC/10.2.0`` ``20221022`` | ``GCC/11.3.0`` +``20221022`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SNAP.md b/docs/version-specific/supported-software/s/SNAP.md index 939e57564d..e892f28456 100644 --- a/docs/version-specific/supported-software/s/SNAP.md +++ b/docs/version-specific/supported-software/s/SNAP.md @@ -6,11 +6,10 @@ search: Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.0beta.23`` | ``intel/2017b`` ``2.0.1`` | ``GCC/11.2.0`` ``2.0.1`` | ``GCC/11.3.0`` ``2.0.1`` | ``GCC/12.2.0`` diff --git a/docs/version-specific/supported-software/s/SNAPE-pooled.md b/docs/version-specific/supported-software/s/SNAPE-pooled.md index 09ea2f0c29..425ee59e56 100644 --- a/docs/version-specific/supported-software/s/SNAPE-pooled.md +++ b/docs/version-specific/supported-software/s/SNAPE-pooled.md @@ -11,7 +11,6 @@ search: version | toolchain --------|---------- ``20150707`` | ``GCC/11.3.0`` -``r32`` | ``foss/2016a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/IMPUTE2.md b/docs/version-specific/supported-software/s/SNPTEST.md similarity index 62% rename from docs/version-specific/supported-software/i/IMPUTE2.md rename to docs/version-specific/supported-software/s/SNPTEST.md index 4d83bdb742..5d56d4cf58 100644 --- a/docs/version-specific/supported-software/i/IMPUTE2.md +++ b/docs/version-specific/supported-software/s/SNPTEST.md @@ -2,18 +2,15 @@ search: boost: 0.5 --- -# IMPUTE2 +# SNPTEST -IMPUTE version 2 (also known as IMPUTE2) is a genotype imputation and haplotype phasing program based on ideas from Howie et al. 2009 +SNPTEST is a program for the analysis of single SNP association in genome-wide studies. The tests implemented include Binary (case-control) phenotypes, single and multiple quantitative phenotypes Bayesian and Frequentist tests Ability to condition upon an arbitrary set of covariates and/or SNPs. Various different methods for the dealing with imputed SNPs. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.3.0`` | ``_x86_64_dynamic`` | ``system`` -``2.3.0`` | ``_x86_64_static`` | ``system`` -``2.3.2`` | ``_x86_64_dynamic`` | ``system`` -``2.3.2`` | ``_x86_64_static`` | ``system`` +version | toolchain +--------|---------- +``2.5.6`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SNPhylo.md b/docs/version-specific/supported-software/s/SNPhylo.md deleted file mode 100644 index 1aca639095..0000000000 --- a/docs/version-specific/supported-software/s/SNPhylo.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SNPhylo - -SNPhylo: a pipeline to generate a phylogenetic tree from huge SNP data - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20140701`` | | ``foss/2016a`` -``20140701`` | | ``intel/2016a`` -``20160204`` | ``-Python-2.7.14-R-3.4.3`` | ``foss/2017b`` -``20160204`` | ``-Python-2.7.14-R-3.4.3`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SNPomatic.md b/docs/version-specific/supported-software/s/SNPomatic.md deleted file mode 100644 index 2a7d72337d..0000000000 --- a/docs/version-specific/supported-software/s/SNPomatic.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SNPomatic - -High throughput sequencing technologies generate large amounts of short reads. Mapping these to a reference sequence consumes large amounts of processing time and memory, and read mapping errors can lead to noisy or incorrect alignments. SNP-o-matic is a fast, memory-efficient, and stringent read mapping tool offering a variety of analytical output functions, with an emphasis on genotyping. - -*homepage*: - -version | toolchain ---------|---------- -``1.0`` | ``GCCcore/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SOAPaligner.md b/docs/version-specific/supported-software/s/SOAPaligner.md deleted file mode 100644 index 5eb1173219..0000000000 --- a/docs/version-specific/supported-software/s/SOAPaligner.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SOAPaligner - -SOAPaligner/soap2 is a member of the SOAP (Short Oligonucleotide Analysis Package). It is an updated version of SOAP software for short oligonucleotide alignment. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.21`` | ``_Linux-x86_64`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SOAPdenovo-Trans.md b/docs/version-specific/supported-software/s/SOAPdenovo-Trans.md index 568a96b1e7..0764a3554d 100644 --- a/docs/version-specific/supported-software/s/SOAPdenovo-Trans.md +++ b/docs/version-specific/supported-software/s/SOAPdenovo-Trans.md @@ -10,7 +10,6 @@ SOAPdenovo-Trans is a de novo transcriptome assembler basing on the SOAPdenovo f version | toolchain --------|---------- -``1.0.4`` | ``intel/2017a`` ``1.0.5`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/s/SOAPdenovo2.md b/docs/version-specific/supported-software/s/SOAPdenovo2.md deleted file mode 100644 index dbd4019499..0000000000 --- a/docs/version-specific/supported-software/s/SOAPdenovo2.md +++ /dev/null @@ -1,21 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SOAPdenovo2 - -SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for human-sized genomes. The program is specially designed to assemble Illumina short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way. SOAPdenovo2 is the successor of SOAPdenovo. - -*homepage*: - -version | toolchain ---------|---------- -``r240`` | ``GCC/5.4.0-2.26`` -``r241`` | ``GCC/6.4.0-2.28`` -``r241`` | ``foss/2018a`` -``r241`` | ``iccifort/2017.4.196-GCC-6.4.0-2.28`` -``r241`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SOAPfuse.md b/docs/version-specific/supported-software/s/SOAPfuse.md deleted file mode 100644 index 311bf65f8a..0000000000 --- a/docs/version-specific/supported-software/s/SOAPfuse.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SOAPfuse - -SOAPfuse is an open source tool developed for genome-wide detection of fusion transcripts from paired-end RNA-Seq data. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.27`` | ``-Perl-5.24.0`` | ``foss/2016b`` -``1.27`` | ``-Perl-5.28.0`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SOCI.md b/docs/version-specific/supported-software/s/SOCI.md index 03fd7f98a4..a03af5cab5 100644 --- a/docs/version-specific/supported-software/s/SOCI.md +++ b/docs/version-specific/supported-software/s/SOCI.md @@ -11,13 +11,13 @@ SOCI is a database access library for C++ that makes the illusion of embedding S version | toolchain --------|---------- ``4.0.1`` | ``GCC/10.2.0`` -``4.0.1`` | ``GCCcore/9.3.0`` ``4.0.2`` | ``GCC/10.3.0`` ``4.0.3`` | ``GCC/11.2.0`` ``4.0.3`` | ``GCC/11.3.0`` ``4.0.3`` | ``GCC/12.2.0`` ``4.0.3`` | ``GCC/12.3.0`` ``4.0.3`` | ``GCC/13.2.0`` +``4.0.3`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SPAdes.md b/docs/version-specific/supported-software/s/SPAdes.md index ac2ad2c686..a04701d112 100644 --- a/docs/version-specific/supported-software/s/SPAdes.md +++ b/docs/version-specific/supported-software/s/SPAdes.md @@ -6,23 +6,11 @@ search: Genome assembler for single-cell and isolates data sets -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``3.10.1`` | | ``foss/2016b`` -``3.10.1`` | | ``foss/2017a`` -``3.11.1`` | | ``foss/2017b`` -``3.11.1`` | | ``foss/2018a`` -``3.12.0`` | | ``foss/2016b`` -``3.12.0`` | | ``foss/2018a`` -``3.12.0`` | | ``foss/2018b`` ``3.13.0`` | | ``GCC/10.3.0`` -``3.13.0`` | | ``foss/2018b`` -``3.13.1`` | | ``GCC/8.2.0-2.31.1`` -``3.14.0`` | ``-Python-3.7.2`` | ``GCC/8.2.0-2.31.1`` -``3.14.0`` | ``-Python-3.7.4`` | ``GCC/8.3.0`` -``3.14.1`` | ``-Python-3.8.2`` | ``GCC/9.3.0`` ``3.15.2`` | ``-Python-2.7.18`` | ``GCC/10.2.0`` ``3.15.2`` | | ``GCC/10.2.0`` ``3.15.3`` | | ``GCC/10.3.0`` @@ -30,8 +18,8 @@ version | versionsuffix | toolchain ``3.15.4`` | | ``GCC/12.2.0`` ``3.15.4`` | | ``GCC/12.3.0`` ``3.15.5`` | | ``GCC/11.3.0`` -``3.9.0`` | | ``foss/2016a`` -``3.9.0`` | | ``foss/2016b`` +``3.15.5`` | ``-Python-2.7.18`` | ``GCC/12.3.0`` +``4.1.0`` | | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SPEI.md b/docs/version-specific/supported-software/s/SPEI.md index eeacc8c5a4..93371a512f 100644 --- a/docs/version-specific/supported-software/s/SPEI.md +++ b/docs/version-specific/supported-software/s/SPEI.md @@ -11,6 +11,7 @@ A simple Python package to calculate drought indices for time series such as the version | toolchain --------|---------- ``0.3.5`` | ``foss/2022a`` +``0.6.0`` | ``gfbf/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SPLASH.md b/docs/version-specific/supported-software/s/SPLASH.md deleted file mode 100644 index 67ad6c107f..0000000000 --- a/docs/version-specific/supported-software/s/SPLASH.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SPLASH - -SPLASH is a free and open source visualisation tool for Smoothed Particle Hydrodynamics (SPH) simulations. - -*homepage*: - -version | toolchain ---------|---------- -``2.8.0`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SPRNG.md b/docs/version-specific/supported-software/s/SPRNG.md index 3957113b93..cb1ba7052c 100644 --- a/docs/version-specific/supported-software/s/SPRNG.md +++ b/docs/version-specific/supported-software/s/SPRNG.md @@ -10,7 +10,8 @@ Scalable Parallel Pseudo Random Number Generators Library version | toolchain --------|---------- -``2.0b`` | ``foss/2016a`` +``5.0`` | ``gompi/2023b`` +``5.0`` | ``iimpi/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SQLAlchemy.md b/docs/version-specific/supported-software/s/SQLAlchemy.md index c3d2702633..07e7a8b8a6 100644 --- a/docs/version-specific/supported-software/s/SQLAlchemy.md +++ b/docs/version-specific/supported-software/s/SQLAlchemy.md @@ -13,6 +13,7 @@ version | toolchain ``2.0.25`` | ``GCCcore/12.3.0`` ``2.0.29`` | ``GCCcore/12.2.0`` ``2.0.29`` | ``GCCcore/13.2.0`` +``2.0.36`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SQLite.md b/docs/version-specific/supported-software/s/SQLite.md index f0013e7ee3..ce92c65a4e 100644 --- a/docs/version-specific/supported-software/s/SQLite.md +++ b/docs/version-specific/supported-software/s/SQLite.md @@ -6,29 +6,10 @@ search: SQLite: SQL Database Engine in a C Library -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.13.0`` | ``GCC/4.9.3-2.25`` -``3.13.0`` | ``GCC/5.4.0-2.26`` -``3.13.0`` | ``GCCcore/6.3.0`` -``3.13.0`` | ``foss/2016.04`` -``3.13.0`` | ``foss/2016a`` -``3.13.0`` | ``foss/2016b`` -``3.13.0`` | ``iccifort/2016.3.210-GCC-5.4.0-2.26`` -``3.13.0`` | ``intel/2016b`` -``3.14.1`` | ``GCCcore/4.9.3`` -``3.17.0`` | ``GCCcore/6.3.0`` -``3.20.1`` | ``GCCcore/6.4.0`` -``3.21.0`` | ``GCCcore/6.4.0`` -``3.23.0`` | ``GCCcore/6.4.0`` -``3.24.0`` | ``GCCcore/7.2.0`` -``3.24.0`` | ``GCCcore/7.3.0`` -``3.26.0`` | ``GCCcore/8.2.0`` -``3.27.2`` | ``GCCcore/8.2.0`` -``3.29.0`` | ``GCCcore/8.3.0`` -``3.31.1`` | ``GCCcore/9.3.0`` ``3.33.0`` | ``GCCcore/10.2.0`` ``3.35.4`` | ``GCCcore/10.3.0`` ``3.36`` | ``GCCcore/11.2.0`` @@ -38,18 +19,7 @@ version | toolchain ``3.42.0`` | ``GCCcore/12.3.0`` ``3.43.1`` | ``GCCcore/13.2.0`` ``3.45.3`` | ``GCCcore/13.3.0`` -``3.8.10.2`` | ``GCC/4.9.3-2.25`` -``3.8.10.2`` | ``GNU/4.9.3-2.25`` -``3.8.10.2`` | ``gimkl/2.11.5`` -``3.8.8.1`` | ``GCC/4.8.4`` -``3.8.8.1`` | ``GCC/4.9.2`` -``3.9.2`` | ``GCC/4.9.3-2.25`` -``3.9.2`` | ``foss/2016a`` -``3.9.2`` | ``gimkl/2.11.5`` -``3.9.2`` | ``intel/2016.02-GCC-4.9`` -``3.9.2`` | ``intel/2016a`` -``3.9.2`` | ``iomkl/2016.07`` -``3.9.2`` | ``iomkl/2016.09-GCC-4.9.3-2.25`` +``3.47.2`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SRA-Toolkit.md b/docs/version-specific/supported-software/s/SRA-Toolkit.md index 29b5a13f76..6dd87390db 100644 --- a/docs/version-specific/supported-software/s/SRA-Toolkit.md +++ b/docs/version-specific/supported-software/s/SRA-Toolkit.md @@ -6,22 +6,12 @@ search: The SRA Toolkit, and the source-code SRA System Development Kit (SDK), will allow you to programmatically access data housed within SRA and convert it from the SRA format -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2.10.4`` | | ``gompi/2019b`` ``2.10.5`` | ``-centos_linux64`` | ``system`` -``2.10.8`` | | ``gompi/2020a`` ``2.10.9`` | | ``gompi/2020b`` -``2.3.5`` | ``-centos_linux64`` | ``system`` -``2.5.4-1`` | ``-centos_linux64`` | ``system`` -``2.5.7`` | ``-centos_linux64`` | ``system`` -``2.8.2-1`` | ``-centos_linux64`` | ``system`` -``2.9.0`` | ``-centos_linux64`` | ``system`` -``2.9.2`` | ``-ubuntu64`` | ``system`` -``2.9.4`` | ``-centos_linux64`` | ``system`` -``2.9.6-1`` | ``-centos_linux64`` | ``system`` ``3.0.0`` | ``-centos_linux64`` | ``system`` ``3.0.0`` | | ``gompi/2021b`` ``3.0.10`` | | ``gompi/2023a`` @@ -29,6 +19,7 @@ version | versionsuffix | toolchain ``3.0.5`` | | ``gompi/2021a`` ``3.0.5`` | | ``gompi/2022b`` ``3.1.1`` | | ``gompi/2023b`` +``3.2.0`` | | ``gompi/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SRPRISM.md b/docs/version-specific/supported-software/s/SRPRISM.md index 538e2a57ca..bd605c79de 100644 --- a/docs/version-specific/supported-software/s/SRPRISM.md +++ b/docs/version-specific/supported-software/s/SRPRISM.md @@ -10,9 +10,8 @@ Single Read Paired Read Indel Substitution Minimizer version | versionsuffix | toolchain --------|---------------|---------- -``3.0.0`` | | ``foss/2018b`` -``3.1.1`` | ``-Java-11`` | ``GCCcore/8.2.0`` ``3.1.2`` | | ``GCCcore/10.2.0`` +``3.3.2`` | ``-Java-11`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SSAHA2.md b/docs/version-specific/supported-software/s/SSAHA2.md deleted file mode 100644 index 8aa0cf2687..0000000000 --- a/docs/version-specific/supported-software/s/SSAHA2.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SSAHA2 - -SSAHA2 (Sequence Search and Alignment by Hashing Algorithm) is a pairwise sequence alignment program designed for the efficient mapping of sequencing reads onto genomic reference sequences. SSAHA2 reads of most sequencing platforms (ABI-Sanger, Roche 454, Illumina-Solexa) and a range of output formats (SAM, CIGAR, PSL etc.) are supported. A pile-up pipeline for analysis and genotype calling is available as a separate package. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.5.5`` | ``-i686`` | ``system`` -``2.5.5`` | ``-x86_64`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SSN.md b/docs/version-specific/supported-software/s/SSN.md deleted file mode 100644 index 2229940cc4..0000000000 --- a/docs/version-specific/supported-software/s/SSN.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SSN - -Spatial statistical modeling and prediction for data on stream networks, including models based on in-stream distance. Models are created using moving average constructions. Spatial linear models, including explanatory variables, can be fit with (restricted) maximum likelihood. Mapping and other graphical functions are included. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.14`` | ``-R-3.6.0`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SSPACE_Basic.md b/docs/version-specific/supported-software/s/SSPACE_Basic.md index 88f469bb3c..4c1378c56e 100644 --- a/docs/version-specific/supported-software/s/SSPACE_Basic.md +++ b/docs/version-specific/supported-software/s/SSPACE_Basic.md @@ -11,8 +11,6 @@ SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension version | versionsuffix | toolchain --------|---------------|---------- ``2.1.1`` | ``-Python-2.7.18`` | ``GCC/10.2.0`` -``2.1.1`` | ``-Perl-5.24.1`` | ``intel/2017a`` -``2.1.1`` | ``-Perl-5.26.0`` | ``intel/2017b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SSW.md b/docs/version-specific/supported-software/s/SSW.md index fc4f0001e9..a1879fa488 100644 --- a/docs/version-specific/supported-software/s/SSW.md +++ b/docs/version-specific/supported-software/s/SSW.md @@ -14,7 +14,6 @@ version | toolchain ``1.1`` | ``GCCcore/10.3.0`` ``1.1`` | ``GCCcore/11.2.0`` ``1.1`` | ``GCCcore/12.3.0`` -``1.1`` | ``GCCcore/9.3.0`` ``1.2.4`` | ``GCCcore/10.3.0`` diff --git a/docs/version-specific/supported-software/s/STAMP.md b/docs/version-specific/supported-software/s/STAMP.md deleted file mode 100644 index 7a071aef12..0000000000 --- a/docs/version-specific/supported-software/s/STAMP.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# STAMP - -STAMP is a tool for characterizing similarities between transcription factor binding motifs - -*homepage*: - -version | toolchain ---------|---------- -``1.2`` | ``intel/2016a`` -``1.3`` | ``intel/2016a`` -``1.3`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/STAR-CCM+.md b/docs/version-specific/supported-software/s/STAR-CCM+.md index 2fc5b9fd38..ba6ecb3f27 100644 --- a/docs/version-specific/supported-software/s/STAR-CCM+.md +++ b/docs/version-specific/supported-software/s/STAR-CCM+.md @@ -4,13 +4,12 @@ search: --- # STAR-CCM+ -STAR-CCM+ is a complete multidisciplinary platform for the simulation of products and designs operating under real-world conditions. +STAR-CCM+ is a multiphysics computational fluid dynamics (CFD) software for the simulation of products operating under real-world conditions. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``13.04.011`` | | ``system`` ``17.02.008`` | ``-r8`` | ``system`` ``17.02.008`` | | ``system`` ``17.04.008`` | ``-r8`` | ``system`` diff --git a/docs/version-specific/supported-software/s/STAR-Fusion.md b/docs/version-specific/supported-software/s/STAR-Fusion.md deleted file mode 100644 index 568e752aac..0000000000 --- a/docs/version-specific/supported-software/s/STAR-Fusion.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# STAR-Fusion - -STAR-Fusion uses the STAR aligner to identify candidate fusion transcripts supported by Illumina reads. STAR-Fusion further processes the output generated by the STAR aligner to map junction reads and spanning reads to a reference annotation set. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.5.0`` | ``-Perl-5.28.0`` | ``foss/2018b`` -``1.6.0`` | ``-Perl-5.28.1-Python-3.7.2`` | ``GCC/8.2.0-2.31.1`` -``1.8.1`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/STAR.md b/docs/version-specific/supported-software/s/STAR.md index 89319b2a2e..8276a86d28 100644 --- a/docs/version-specific/supported-software/s/STAR.md +++ b/docs/version-specific/supported-software/s/STAR.md @@ -10,23 +10,6 @@ STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays version | toolchain --------|---------- -``2.4.2a`` | ``foss/2018b`` -``2.5.0a`` | ``GNU/4.9.3-2.25`` -``2.5.2a`` | ``foss/2016a`` -``2.5.2b`` | ``intel/2016b`` -``2.5.3a`` | ``GCC/8.3.0`` -``2.5.3a`` | ``GCC/9.3.0`` -``2.5.3a`` | ``intel/2017a`` -``2.5.3a`` | ``intel/2017b`` -``2.5.4b`` | ``foss/2016b`` -``2.5.4b`` | ``foss/2017b`` -``2.5.4b`` | ``intel/2017b`` -``2.6.0c`` | ``foss/2018a`` -``2.6.0c`` | ``intel/2018a`` -``2.6.1c`` | ``foss/2018b`` -``2.7.0d`` | ``foss/2018b`` -``2.7.0f`` | ``GCC/8.2.0-2.31.1`` -``2.7.0f`` | ``foss/2018b`` ``2.7.10a_alpha_220601`` | ``GCC/10.3.0`` ``2.7.10b`` | ``GCC/11.3.0`` ``2.7.10b`` | ``GCC/12.2.0`` @@ -35,17 +18,8 @@ version | toolchain ``2.7.11b`` | ``GCC/12.3.0`` ``2.7.11b`` | ``GCC/13.2.0`` ``2.7.11b_alpha_2024-02-09`` | ``GCC/12.3.0`` -``2.7.1a`` | ``GCC/8.2.0-2.31.1`` -``2.7.1a`` | ``foss/2018b`` -``2.7.2b`` | ``GCC/8.3.0`` -``2.7.3a`` | ``GCC/8.3.0`` -``2.7.3a`` | ``GCC/9.3.0`` -``2.7.4a`` | ``GCC/9.3.0`` -``2.7.5b`` | ``GCC/9.3.0`` ``2.7.6a`` | ``GCC/10.2.0`` -``2.7.6a`` | ``GCC/9.3.0`` ``2.7.7a`` | ``GCC/10.2.0`` -``2.7.7a`` | ``GCC/9.3.0`` ``2.7.8a`` | ``GCC/10.2.0`` ``2.7.9a`` | ``GCC/10.3.0`` ``2.7.9a`` | ``GCC/11.2.0`` diff --git a/docs/version-specific/supported-software/s/STEAK.md b/docs/version-specific/supported-software/s/STEAK.md index 695c5dbc7a..210aeca074 100644 --- a/docs/version-specific/supported-software/s/STEAK.md +++ b/docs/version-specific/supported-software/s/STEAK.md @@ -4,14 +4,13 @@ search: --- # STEAK -Detects integrations of any sort in high-throughput sequencing (HTS) data. STEAK was built for validating and discovering transposable element (TE) and retroviral integrations in a variety of HTS data. The software performs on both single-end (SE) and paired-end ( PE) libraries and on a variety of HTS sequencing strategies. It can be applied to a broad range of research interests and clinical uses such as population genetic studies and detecting polymorphic integrations. +Detects integrations of any sort in high-throughput sequencing (HTS) data. STEAK was built for validating and discovering transposable element (TE) and retroviral integrations in a variety of HTS data. The software performs on both single-end (SE) and paired-end ( PE) libraries and on a variety of HTS sequencing strategies. It can be applied to a broad range of research interests and clinical uses such as population genetic studies and detecting polymorphic integrations. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2019.09.12`` | ``-Python-2.7.16`` | ``foss/2019b`` -``2019.09.12`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``2019.09.12`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/STIR.md b/docs/version-specific/supported-software/s/STIR.md deleted file mode 100644 index b0e13ec853..0000000000 --- a/docs/version-specific/supported-software/s/STIR.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# STIR - -Software for Tomographic Image Reconstruction - -*homepage*: - -version | toolchain ---------|---------- -``3.0`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/STREAM.md b/docs/version-specific/supported-software/s/STREAM.md index ac9d9d19cf..716aae296f 100644 --- a/docs/version-specific/supported-software/s/STREAM.md +++ b/docs/version-specific/supported-software/s/STREAM.md @@ -11,12 +11,6 @@ The STREAM benchmark is a simple synthetic benchmark program that measures susta version | toolchain --------|---------- ``5.10`` | ``GCC/11.3.0`` -``5.10`` | ``GCC/7.3.0-2.30`` -``5.10`` | ``GCC/8.2.0-2.31.1`` -``5.10`` | ``GCC/9.3.0`` -``5.10`` | ``iccifort/2020.1.217`` -``5.10`` | ``intel/2016b`` -``5.10`` | ``intel/2018b`` ``5.10`` | ``intel-compilers/2022.2.1`` ``5.10`` | ``intel-compilers/2024.2.0`` diff --git a/docs/version-specific/supported-software/s/SUMACLUST.md b/docs/version-specific/supported-software/s/SUMACLUST.md deleted file mode 100644 index 3e6d926b5e..0000000000 --- a/docs/version-specific/supported-software/s/SUMACLUST.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SUMACLUST - -SUMATRA and SUMACLUST: fast and exact comparison and clustering of sequences. - -*homepage*: - -version | toolchain ---------|---------- -``1.0.20`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SUMATRA.md b/docs/version-specific/supported-software/s/SUMATRA.md deleted file mode 100644 index 63a217e6c4..0000000000 --- a/docs/version-specific/supported-software/s/SUMATRA.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SUMATRA - -SUMATRA and SUMACLUST: fast and exact comparison and clustering of sequences. - -*homepage*: - -version | toolchain ---------|---------- -``1.0.20`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SUMO.md b/docs/version-specific/supported-software/s/SUMO.md index 8132a3f804..f7af18616b 100644 --- a/docs/version-specific/supported-software/s/SUMO.md +++ b/docs/version-specific/supported-software/s/SUMO.md @@ -8,12 +8,10 @@ Simulation of Urban MObility" (SUMO) is an open source, highly portable, microsc *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.12.0`` | | ``foss/2021b`` -``1.14.1`` | | ``foss/2021b`` -``1.3.1`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``1.7.0`` | ``-Python-3.8.2`` | ``foss/2020a`` +version | toolchain +--------|---------- +``1.12.0`` | ``foss/2021b`` +``1.14.1`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SUNDIALS.md b/docs/version-specific/supported-software/s/SUNDIALS.md index 77742613c5..48398e861b 100644 --- a/docs/version-specific/supported-software/s/SUNDIALS.md +++ b/docs/version-specific/supported-software/s/SUNDIALS.md @@ -6,22 +6,10 @@ search: SUNDIALS: SUite of Nonlinear and DIfferential/ALgebraic Equation Solvers -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2.6.2`` | | ``intel/2016b`` -``2.6.2`` | | ``intel/2018b`` -``2.7.0`` | | ``foss/2016b`` -``2.7.0`` | | ``foss/2017b`` -``2.7.0`` | | ``foss/2018a`` -``2.7.0`` | | ``foss/2018b`` -``2.7.0`` | | ``intel/2016b`` -``2.7.0`` | | ``intel/2017a`` -``2.7.0`` | | ``intel/2017b`` -``2.7.0`` | | ``intel/2018a`` -``5.1.0`` | | ``foss/2019b`` -``5.1.0`` | | ``intel/2019b`` ``5.7.0`` | | ``foss/2020b`` ``5.7.0`` | | ``fosscuda/2020b`` ``5.7.0`` | | ``intel/2020b`` diff --git a/docs/version-specific/supported-software/s/SURVIVOR.md b/docs/version-specific/supported-software/s/SURVIVOR.md index 578f54eaf5..2bd7e9b4c7 100644 --- a/docs/version-specific/supported-software/s/SURVIVOR.md +++ b/docs/version-specific/supported-software/s/SURVIVOR.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``1.0.7-19-ged1ca51`` | ``GCC/11.2.0`` ``1.0.7-19-ged1ca51`` | ``GCC/12.2.0`` +``1.0.7-20231201`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SVDquest.md b/docs/version-specific/supported-software/s/SVDquest.md deleted file mode 100644 index 49cef095cb..0000000000 --- a/docs/version-specific/supported-software/s/SVDquest.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SVDquest - -SVDquartets-based species trees - -*homepage*: - -version | toolchain ---------|---------- -``20190627`` | ``gompi/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SVG.md b/docs/version-specific/supported-software/s/SVG.md index c5b633edeb..e50c2fe3d9 100644 --- a/docs/version-specific/supported-software/s/SVG.md +++ b/docs/version-specific/supported-software/s/SVG.md @@ -8,12 +8,11 @@ Perl binding for SVG *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.84`` | ``-Perl-5.30.0`` | ``foss/2019b`` -``2.87`` | | ``GCC/11.2.0`` -``2.87`` | | ``GCC/11.3.0`` -``2.87`` | | ``GCC/12.2.0`` +version | toolchain +--------|---------- +``2.87`` | ``GCC/11.2.0`` +``2.87`` | ``GCC/11.3.0`` +``2.87`` | ``GCC/12.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SWASH.md b/docs/version-specific/supported-software/s/SWASH.md deleted file mode 100644 index 461735ed31..0000000000 --- a/docs/version-specific/supported-software/s/SWASH.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SWASH - -SWASH is a general-purpose numerical tool for simulating unsteady, non-hydrostatic, free-surface, rotational flow and transport phenomena in coastal waters as driven by waves, tides, buoyancy and wind forces. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.14`` | ``-mpi`` | ``intel/2016b`` -``3.14`` | ``-mpi`` | ``intel/2017a`` -``4.01`` | ``-mpi`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SWAT+.md b/docs/version-specific/supported-software/s/SWAT+.md index 2847a53551..9a280b19c3 100644 --- a/docs/version-specific/supported-software/s/SWAT+.md +++ b/docs/version-specific/supported-software/s/SWAT+.md @@ -10,7 +10,6 @@ The Soil & Water Assessment Tool (SWAT) is a small watershed to river basin-scal version | toolchain --------|---------- -``60.4.1`` | ``GCC/9.3.0`` ``60.5.1`` | ``iccifort/2020.4.304`` diff --git a/docs/version-specific/supported-software/s/SWIG.md b/docs/version-specific/supported-software/s/SWIG.md index d1fd815a79..3c54ddad48 100644 --- a/docs/version-specific/supported-software/s/SWIG.md +++ b/docs/version-specific/supported-software/s/SWIG.md @@ -8,49 +8,17 @@ SWIG is a software development tool that connects programs written in C and C++ *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0.10`` | ``-Python-2.7.12`` | ``foss/2016b`` -``3.0.10`` | ``-Python-2.7.12-PCRE-8.39`` | ``intel/2016b`` -``3.0.10`` | ``-Python-2.7.12`` | ``intel/2016b`` -``3.0.11`` | ``-Python-2.7.12`` | ``foss/2016b`` -``3.0.11`` | ``-Python-2.7.12`` | ``intel/2016b`` -``3.0.12`` | ``-Python-2.7.14-bare`` | ``GCCcore/6.4.0`` -``3.0.12`` | ``-Python-2.7.15`` | ``GCCcore/8.2.0`` -``3.0.12`` | ``-Python-3.7.2`` | ``GCCcore/8.2.0`` -``3.0.12`` | | ``GCCcore/8.2.0`` -``3.0.12`` | | ``GCCcore/8.3.0`` -``3.0.12`` | ``-Python-2.7.14`` | ``foss/2017b`` -``3.0.12`` | ``-Python-3.6.2`` | ``foss/2017b`` -``3.0.12`` | ``-Python-3.6.3`` | ``foss/2017b`` -``3.0.12`` | ``-Python-2.7.14`` | ``foss/2018a`` -``3.0.12`` | ``-Python-3.6.4`` | ``foss/2018a`` -``3.0.12`` | ``-Python-2.7.15`` | ``foss/2018b`` -``3.0.12`` | ``-Python-3.6.6`` | ``foss/2018b`` -``3.0.12`` | ``-Python-2.7.13`` | ``intel/2017a`` -``3.0.12`` | ``-Python-3.6.1`` | ``intel/2017a`` -``3.0.12`` | ``-Python-2.7.14`` | ``intel/2017b`` -``3.0.12`` | ``-Python-3.6.3`` | ``intel/2017b`` -``3.0.12`` | ``-Python-3.6.2`` | ``intel/2018.00`` -``3.0.12`` | ``-Python-3.6.3`` | ``intel/2018.01`` -``3.0.12`` | ``-Python-2.7.14`` | ``intel/2018a`` -``3.0.12`` | ``-Python-3.6.4`` | ``intel/2018a`` -``3.0.12`` | ``-Python-2.7.15`` | ``intel/2018b`` -``3.0.12`` | ``-Python-3.6.6`` | ``intel/2018b`` -``3.0.12`` | ``-Python-3.6.4`` | ``iomkl/2018a`` -``3.0.8`` | ``-Python-2.7.11`` | ``foss/2016a`` -``3.0.8`` | ``-Python-3.5.1`` | ``foss/2016a`` -``3.0.8`` | ``-Python-2.7.11`` | ``intel/2016a`` -``4.0.1`` | | ``GCCcore/8.3.0`` -``4.0.1`` | | ``GCCcore/9.3.0`` -``4.0.2`` | | ``GCCcore/10.2.0`` -``4.0.2`` | | ``GCCcore/10.3.0`` -``4.0.2`` | | ``GCCcore/11.2.0`` -``4.0.2`` | | ``GCCcore/11.3.0`` -``4.1.1`` | | ``GCCcore/12.2.0`` -``4.1.1`` | | ``GCCcore/12.3.0`` -``4.1.1`` | | ``GCCcore/13.2.0`` -``4.2.1`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``4.0.2`` | ``GCCcore/10.2.0`` +``4.0.2`` | ``GCCcore/10.3.0`` +``4.0.2`` | ``GCCcore/11.2.0`` +``4.0.2`` | ``GCCcore/11.3.0`` +``4.1.1`` | ``GCCcore/12.2.0`` +``4.1.1`` | ``GCCcore/12.3.0`` +``4.1.1`` | ``GCCcore/13.2.0`` +``4.2.1`` | ``GCCcore/13.3.0`` +``4.3.0`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SYMPHONY.md b/docs/version-specific/supported-software/s/SYMPHONY.md deleted file mode 100644 index b2adff0611..0000000000 --- a/docs/version-specific/supported-software/s/SYMPHONY.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SYMPHONY - -SYMPHONY is an open-source solver for mixed-integer linear programs (MILPs) written in C. - -*homepage*: - -version | toolchain ---------|---------- -``5.6.16`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/Sabre.md b/docs/version-specific/supported-software/s/Sabre.md index c971052be2..fb1d9ac477 100644 --- a/docs/version-specific/supported-software/s/Sabre.md +++ b/docs/version-specific/supported-software/s/Sabre.md @@ -11,6 +11,7 @@ Sabre is a tool that will demultiplex barcoded reads into separate files. It wi version | toolchain --------|---------- ``2013-09-28`` | ``GCC/12.2.0`` +``2013-09-28`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Safetensors.md b/docs/version-specific/supported-software/s/Safetensors.md index 596ddd7bd8..3ddfda1bc9 100644 --- a/docs/version-specific/supported-software/s/Safetensors.md +++ b/docs/version-specific/supported-software/s/Safetensors.md @@ -4,15 +4,16 @@ search: --- # Safetensors -Safetensors is a new simple format for storing tensors safely (as opposed to pickle) and that is still fast (zero-copy). Safetensors is really fast. +Safetensors is a new simple format for storing tensors safely (as opposed to pickle) and that is still fast (zero-copy). Safetensors is really fast. This variant of Safetensors is installed with support for numpy and PyTorch *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.3.1`` | ``-CUDA-11.7.0`` | ``foss/2022a`` -``0.3.1`` | | ``foss/2022a`` -``0.4.3`` | | ``gfbf/2023a`` +version | toolchain +--------|---------- +``0.3.1`` | ``foss/2022a`` +``0.4.3`` | ``gfbf/2022b`` +``0.4.3`` | ``gfbf/2023a`` +``0.4.4`` | ``gfbf/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Sailfish.md b/docs/version-specific/supported-software/s/Sailfish.md deleted file mode 100644 index 798b3aea44..0000000000 --- a/docs/version-specific/supported-software/s/Sailfish.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Sailfish - -Sailfish is a software tool that implements a novel, alignment-free algorithm for the estimation of isoform abundances directly from a set of reference sequences and RNA-seq reads. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.1`` | ``-Python-2.7.12`` | ``foss/2016b`` -``0.10.1`` | | ``gompi/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/Salmon.md b/docs/version-specific/supported-software/s/Salmon.md index 04abcf1c5a..0c590d57bc 100644 --- a/docs/version-specific/supported-software/s/Salmon.md +++ b/docs/version-specific/supported-software/s/Salmon.md @@ -4,28 +4,17 @@ search: --- # Salmon -Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data. +Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimate from RNA-seq data. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.11.2`` | | ``intel/2018a`` -``0.12.0`` | | ``foss/2018b`` -``0.14.1`` | | ``foss/2018b`` -``0.14.2`` | | ``gompi/2019a`` -``0.8.2`` | ``-Python-2.7.12`` | ``foss/2016b`` -``0.8.2`` | | ``system`` -``1.0.0`` | | ``gompi/2019a`` -``1.0.0`` | | ``gompi/2019b`` -``1.1.0`` | | ``gompi/2019b`` -``1.10.1`` | | ``GCC/12.2.0`` -``1.10.3`` | | ``GCC/12.3.0`` -``1.2.0`` | | ``gompi/2019b`` -``1.3.0`` | | ``gompi/2020a`` -``1.4.0`` | | ``GCC/11.2.0`` -``1.4.0`` | | ``gompi/2020b`` -``1.9.0`` | | ``GCC/11.3.0`` +version | toolchain +--------|---------- +``1.10.1`` | ``GCC/12.2.0`` +``1.10.3`` | ``GCC/12.3.0`` +``1.4.0`` | ``GCC/11.2.0`` +``1.4.0`` | ``gompi/2020b`` +``1.9.0`` | ``GCC/11.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Sambamba.md b/docs/version-specific/supported-software/s/Sambamba.md index 939113efd4..771be79d4c 100644 --- a/docs/version-specific/supported-software/s/Sambamba.md +++ b/docs/version-specific/supported-software/s/Sambamba.md @@ -4,14 +4,12 @@ search: --- # Sambamba -Sambamba is a high performance modern robust and fast tool (and library), written in the D programming language, for working with SAM and BAM files. Current functionality is an important subset of samtools functionality, including view, index, sort, markdup, and depth +Sambamba is a high performance modern robust and fast tool (and library), written in the D programming language, for working with SAM and BAM files. Current functionality is an important subset of samtools functionality, including view, index, sort, markdup, and depth. -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.6.6`` | ``system`` -``0.7.1`` | ``system`` ``0.8.0`` | ``GCC/10.2.0`` ``0.8.2`` | ``GCC/10.3.0`` ``1.0.1`` | ``GCC/11.3.0`` diff --git a/docs/version-specific/supported-software/s/Samcef.md b/docs/version-specific/supported-software/s/Samcef.md deleted file mode 100644 index a8c5712fde..0000000000 --- a/docs/version-specific/supported-software/s/Samcef.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Samcef - -FEM solver solution suite for basic linear structures to advanced, flexible nonlinear mechanisms and thermal applications. - -*homepage*: - -version | toolchain ---------|---------- -``17.0-03`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/Saxon-HE.md b/docs/version-specific/supported-software/s/Saxon-HE.md index 1216d411f1..fcecee779d 100644 --- a/docs/version-specific/supported-software/s/Saxon-HE.md +++ b/docs/version-specific/supported-software/s/Saxon-HE.md @@ -11,8 +11,6 @@ Open Source SAXON XSLT processor developed by Saxonica Limited. version | versionsuffix | toolchain --------|---------------|---------- ``12.4`` | ``-Java-21`` | ``system`` -``9.7.0.21`` | ``-Java-1.8.0_162`` | ``system`` -``9.7.0.4`` | ``-Java-1.7.0_79`` | ``system`` ``9.9.1.7`` | ``-Java-13`` | ``system`` diff --git a/docs/version-specific/supported-software/s/ScaFaCoS.md b/docs/version-specific/supported-software/s/ScaFaCoS.md index 7bb3c97ddd..253136e161 100644 --- a/docs/version-specific/supported-software/s/ScaFaCoS.md +++ b/docs/version-specific/supported-software/s/ScaFaCoS.md @@ -10,14 +10,13 @@ ScaFaCoS is a library of scalable fast coulomb solvers. version | toolchain --------|---------- -``1.0.1`` | ``foss/2020a`` ``1.0.1`` | ``foss/2020b`` ``1.0.1`` | ``foss/2021a`` ``1.0.1`` | ``foss/2021b`` -``1.0.1`` | ``intel/2020a`` ``1.0.4`` | ``foss/2022a`` ``1.0.4`` | ``foss/2022b`` ``1.0.4`` | ``foss/2023a`` +``1.0.4`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/ScaLAPACK.md b/docs/version-specific/supported-software/s/ScaLAPACK.md index 538c994866..b7399fc615 100644 --- a/docs/version-specific/supported-software/s/ScaLAPACK.md +++ b/docs/version-specific/supported-software/s/ScaLAPACK.md @@ -6,48 +6,18 @@ search: The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2.0.2`` | ``-OpenBLAS-0.2.20`` | ``gimpi/2017b`` -``2.0.2`` | ``-OpenBLAS-0.2.20`` | ``gimpi/2018a`` -``2.0.2`` | ``-OpenBLAS-0.2.20`` | ``gimpic/2017b`` -``2.0.2`` | ``-OpenBLAS-0.2.15-LAPACK-3.6.0`` | ``gmpich/2016a`` -``2.0.2`` | ``-OpenBLAS-0.2.20`` | ``gmpich/2017.08`` -``2.0.2`` | ``-OpenBLAS-0.2.13-LAPACK-3.5.0`` | ``gmvapich2/1.7.20`` -``2.0.2`` | ``-OpenBLAS-0.2.15-LAPACK-3.6.0`` | ``gmvapich2/2016a`` -``2.0.2`` | ``-OpenBLAS-0.2.18-LAPACK-3.6.0`` | ``gompi/2016.04`` -``2.0.2`` | ``-OpenBLAS-0.2.18-LAPACK-3.6.0`` | ``gompi/2016.06`` -``2.0.2`` | ``-OpenBLAS-0.2.18-LAPACK-3.6.1`` | ``gompi/2016.07`` -``2.0.2`` | ``-OpenBLAS-0.2.19-LAPACK-3.6.1`` | ``gompi/2016.09`` -``2.0.2`` | ``-OpenBLAS-0.2.15-LAPACK-3.6.0`` | ``gompi/2016a`` -``2.0.2`` | ``-OpenBLAS-0.2.18-LAPACK-3.6.1`` | ``gompi/2016b`` -``2.0.2`` | ``-OpenBLAS-0.2.19-LAPACK-3.7.0`` | ``gompi/2017a`` -``2.0.2`` | ``-OpenBLAS-0.2.20`` | ``gompi/2017b`` -``2.0.2`` | ``-OpenBLAS-0.3.3`` | ``gompi/2018.08`` -``2.0.2`` | ``-OpenBLAS-0.2.20`` | ``gompi/2018a`` -``2.0.2`` | ``-BLIS-0.3.2`` | ``gompi/2018b`` -``2.0.2`` | ``-OpenBLAS-0.3.1`` | ``gompi/2018b`` -``2.0.2`` | ``-OpenBLAS-0.3.5`` | ``gompi/2019a`` -``2.0.2`` | | ``gompi/2019b`` -``2.0.2`` | ``-OpenBLAS-0.2.20`` | ``gompic/2017b`` -``2.0.2`` | ``-OpenBLAS-0.2.20`` | ``gompic/2018a`` -``2.0.2`` | ``-OpenBLAS-0.3.1`` | ``gompic/2018b`` -``2.0.2`` | ``-OpenBLAS-0.3.5`` | ``gompic/2019a`` -``2.0.2`` | | ``gompic/2019b`` -``2.1.0`` | ``-bf`` | ``gompi/2020a`` -``2.1.0`` | | ``gompi/2020a`` ``2.1.0`` | ``-bf`` | ``gompi/2020b`` ``2.1.0`` | ``-bl`` | ``gompi/2020b`` ``2.1.0`` | | ``gompi/2020b`` ``2.1.0`` | ``-bf`` | ``gompi/2021a`` ``2.1.0`` | ``-fb`` | ``gompi/2021a`` ``2.1.0`` | ``-fb`` | ``gompi/2021b`` -``2.1.0`` | | ``gompic/2020a`` ``2.1.0`` | | ``gompic/2020b`` ``2.1.0`` | ``-bf`` | ``iimpi/2020b`` -``2.2`` | ``-amd`` | ``gompi/2020a`` ``2.2.0`` | ``-fb`` | ``gmpich/2024.06`` ``2.2.0`` | ``-fb`` | ``gompi/2022.05`` ``2.2.0`` | ``-fb`` | ``gompi/2022.10`` diff --git a/docs/version-specific/supported-software/s/Scalasca.md b/docs/version-specific/supported-software/s/Scalasca.md index 3b28ad1365..bd9ab2ddb9 100644 --- a/docs/version-specific/supported-software/s/Scalasca.md +++ b/docs/version-specific/supported-software/s/Scalasca.md @@ -4,18 +4,16 @@ search: --- # Scalasca -Scalasca is a software tool that supports the performance optimization of parallel programs by measuring and analyzing their runtime behavior. The analysis identifies potential performance bottlenecks -- in particular those concerning communication and synchronization -- and offers guidance in exploring their causes. +Scalasca is a software tool that supports the performance optimization of parallel programs by measuring and analyzing their runtime behavior. The analysis identifies potential performance bottlenecks -- in particular those concerning communication and synchronization -- and offers guidance in exploring their causes. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.3`` | ``foss/2016a`` -``2.5`` | ``gompi/2019a`` -``2.5`` | ``gompi/2020a`` ``2.6`` | ``gompi/2021a`` ``2.6`` | ``gompic/2020b`` ``2.6.1`` | ``gompi/2022a`` +``2.6.1`` | ``gompi/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Scalene.md b/docs/version-specific/supported-software/s/Scalene.md index c979666ec3..fdf5dbb368 100644 --- a/docs/version-specific/supported-software/s/Scalene.md +++ b/docs/version-specific/supported-software/s/Scalene.md @@ -15,6 +15,7 @@ version | toolchain ``1.5.26`` | ``GCCcore/12.2.0`` ``1.5.26`` | ``GCCcore/12.3.0`` ``1.5.35`` | ``GCCcore/13.2.0`` +``1.5.51`` | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Schrodinger.md b/docs/version-specific/supported-software/s/Schrodinger.md index fc00540fe7..72298fdefa 100644 --- a/docs/version-specific/supported-software/s/Schrodinger.md +++ b/docs/version-specific/supported-software/s/Schrodinger.md @@ -4,7 +4,7 @@ search: --- # Schrodinger -Schrodinger aims to provide integrated software solutions and services that truly meet its customers needs. We want to empower researchers around the world to achieve their goals of improving human health and quality of life through advanced computational techniques that transform the way chemists design compounds and materials. +Schrodinger aims to provide integrated software solutions and services that truly meet its customers needs. We want to empower researchers around the world to achieve their goals of improving human health and quality of life through advanced computational techniques that transform the way chemists design compounds and materials. *homepage*: diff --git a/docs/version-specific/supported-software/s/SciANN.md b/docs/version-specific/supported-software/s/SciANN.md new file mode 100644 index 0000000000..e63d536593 --- /dev/null +++ b/docs/version-specific/supported-software/s/SciANN.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# SciANN + +A Keras/Tensorflow wrapper for scientific computations and physics-informed deep learning using artificial neural networks. + +*homepage*: + +version | toolchain +--------|---------- +``0.7.0.1`` | ``foss/2022a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/SciKeras.md b/docs/version-specific/supported-software/s/SciKeras.md new file mode 100644 index 0000000000..b20f380062 --- /dev/null +++ b/docs/version-specific/supported-software/s/SciKeras.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# SciKeras + +Scikit-Learn API wrapper for Keras. The goal of scikeras is to make it possible to use Keras/TensorFlow with sklearn. This is achieved by providing a wrapper around Keras that has an Scikit-Learn interface. + +*homepage*: + +version | toolchain +--------|---------- +``0.12.0`` | ``foss/2022a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/SciPy-bundle.md b/docs/version-specific/supported-software/s/SciPy-bundle.md index aaf6a34f07..fb1f308ecb 100644 --- a/docs/version-specific/supported-software/s/SciPy-bundle.md +++ b/docs/version-specific/supported-software/s/SciPy-bundle.md @@ -10,25 +10,6 @@ Bundle of Python packages for scientific software version | versionsuffix | toolchain --------|---------------|---------- -``2019.03`` | | ``foss/2019a`` -``2019.03`` | | ``fosscuda/2019a`` -``2019.03`` | | ``intel/2019a`` -``2019.03`` | | ``intelcuda/2019a`` -``2019.10`` | ``-Python-2.7.16`` | ``foss/2019b`` -``2019.10`` | ``-Python-3.7.4`` | ``foss/2019b`` -``2019.10`` | ``-Python-2.7.16`` | ``fosscuda/2019b`` -``2019.10`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``2019.10`` | ``-Python-3.7.2`` | ``intel/2019a`` -``2019.10`` | ``-Python-2.7.16`` | ``intel/2019b`` -``2019.10`` | ``-Python-3.7.4`` | ``intel/2019b`` -``2019.10`` | ``-Python-3.7.4`` | ``intelcuda/2019b`` -``2020.03`` | ``-Python-2.7.18`` | ``foss/2020a`` -``2020.03`` | ``-Python-3.8.2`` | ``foss/2020a`` -``2020.03`` | ``-Python-2.7.18`` | ``fosscuda/2020a`` -``2020.03`` | ``-Python-3.8.2`` | ``fosscuda/2020a`` -``2020.03`` | ``-Python-2.7.18`` | ``intel/2020a`` -``2020.03`` | ``-Python-3.8.2`` | ``intel/2020a`` -``2020.03`` | ``-Python-3.8.2`` | ``intelcuda/2020a`` ``2020.11`` | ``-Python-2.7.18`` | ``foss/2020b`` ``2020.11`` | | ``foss/2020b`` ``2020.11`` | | ``fosscuda/2020b`` @@ -51,6 +32,7 @@ version | versionsuffix | toolchain ``2023.11`` | | ``gfbf/2023b`` ``2024.05`` | | ``gfbf/2024.05`` ``2024.05`` | | ``gfbf/2024a`` +``2024.06`` | ``-Python-2.7.18`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/ScientificPython.md b/docs/version-specific/supported-software/s/ScientificPython.md deleted file mode 100644 index 44c4860cf4..0000000000 --- a/docs/version-specific/supported-software/s/ScientificPython.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ScientificPython - -ScientificPython is a collection of Python modules for scientific computing. It contains support for geometry, mathematical functions, statistics, physical units, IO, visualization, and parallelization. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.9.4`` | ``-Python-2.7.11`` | ``foss/2016a`` -``2.9.4`` | ``-Python-2.7.11`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/Scoary.md b/docs/version-specific/supported-software/s/Scoary.md index 9021cf065d..d4832c89f6 100644 --- a/docs/version-specific/supported-software/s/Scoary.md +++ b/docs/version-specific/supported-software/s/Scoary.md @@ -8,10 +8,9 @@ Microbial pan-GWAS using the output from Roary *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.6.16`` | | ``foss/2021a`` -``1.6.16`` | ``-Python-2.7.14`` | ``intel/2018a`` +version | toolchain +--------|---------- +``1.6.16`` | ``foss/2021a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Score-P.md b/docs/version-specific/supported-software/s/Score-P.md index d5864a2363..fc316e0af5 100644 --- a/docs/version-specific/supported-software/s/Score-P.md +++ b/docs/version-specific/supported-software/s/Score-P.md @@ -4,19 +4,12 @@ search: --- # Score-P -The Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications. +The Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2.0.1`` | | ``foss/2016a`` -``6.0`` | | ``gompi/2019a`` -``6.0`` | | ``gompi/2019b`` -``6.0`` | | ``gompi/2020a`` -``6.0`` | | ``gompic/2019a`` -``6.0`` | | ``gompic/2019b`` -``6.0`` | | ``gompic/2020a`` ``7.0`` | | ``gompi/2020b`` ``7.0`` | | ``gompi/2021a`` ``7.0`` | | ``gompic/2020b`` @@ -30,10 +23,18 @@ version | versionsuffix | toolchain ``8.1`` | ``-CUDA-12.1.1`` | ``gompi/2023a`` ``8.1`` | | ``gompi/2023a`` ``8.3`` | | ``gompi/2022b`` +``8.4`` | ``-CUDA-11.7.0`` | ``gompi/2022a`` +``8.4`` | | ``gompi/2022a`` +``8.4`` | ``-CUDA-12.0.0`` | ``gompi/2022b`` +``8.4`` | | ``gompi/2022b`` +``8.4`` | ``-CUDA-12.1.1`` | ``gompi/2023a`` +``8.4`` | | ``gompi/2023a`` ``8.4`` | ``-CUDA-12.4.0`` | ``gompi/2023b`` ``8.4`` | | ``gompi/2023b`` ``8.4`` | ``-CUDA-12.6.0`` | ``gompi/2024a`` ``8.4`` | | ``gompi/2024a`` +``8.4`` | ``-CUDA-12.6.0`` | ``iimpi/2024a`` +``8.4`` | | ``iimpi/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Scrappie.md b/docs/version-specific/supported-software/s/Scrappie.md deleted file mode 100644 index cf8b7163cc..0000000000 --- a/docs/version-specific/supported-software/s/Scrappie.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Scrappie - -Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group. - -*homepage*: - -version | toolchain ---------|---------- -``1.3.2`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/Scythe.md b/docs/version-specific/supported-software/s/Scythe.md deleted file mode 100644 index bcdf7c9ab9..0000000000 --- a/docs/version-specific/supported-software/s/Scythe.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Scythe - -Scythe uses a Naive Bayesian approach to classify contaminant substrings in sequence reads. It considers quality information, which can make it robust in picking out 3'-end adapters, which often include poor quality bases. - -*homepage*: - -version | toolchain ---------|---------- -``0.994`` | ``GCCcore/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/Seaborn.md b/docs/version-specific/supported-software/s/Seaborn.md index d72a454902..3b0022edbd 100644 --- a/docs/version-specific/supported-software/s/Seaborn.md +++ b/docs/version-specific/supported-software/s/Seaborn.md @@ -10,10 +10,6 @@ Seaborn is a Python visualization library based on matplotlib. It provides a hi version | versionsuffix | toolchain --------|---------------|---------- -``0.10.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.10.0`` | ``-Python-3.7.4`` | ``intel/2019b`` -``0.10.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``0.10.1`` | ``-Python-3.8.2`` | ``intel/2020a`` ``0.10.1`` | | ``intel/2020b`` ``0.11.1`` | | ``foss/2020b`` ``0.11.1`` | | ``fosscuda/2020b`` @@ -26,29 +22,8 @@ version | versionsuffix | toolchain ``0.13.2`` | | ``gfbf/2023a`` ``0.13.2`` | | ``gfbf/2023b`` ``0.13.2`` | | ``gfbf/2024a`` -``0.7.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.8.1`` | ``-Python-2.7.13`` | ``foss/2017a`` -``0.8.1`` | ``-Python-2.7.14`` | ``intel/2018a`` -``0.9.0`` | ``-Python-2.7.14`` | ``foss/2017b`` -``0.9.0`` | ``-Python-3.6.3`` | ``foss/2017b`` -``0.9.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``0.9.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.9.0`` | ``-Python-2.7.15`` | ``foss/2019a`` -``0.9.0`` | ``-Python-3.7.2`` | ``foss/2019a`` -``0.9.0`` | ``-Python-2.7.14`` | ``fosscuda/2017b`` -``0.9.0`` | ``-Python-3.6.3`` | ``fosscuda/2017b`` -``0.9.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``0.9.0`` | ``-Python-3.6.3`` | ``intel/2017b`` -``0.9.0`` | ``-Python-2.7.14`` | ``intel/2018a`` -``0.9.0`` | ``-Python-3.6.4`` | ``intel/2018a`` -``0.9.0`` | ``-Python-2.7.15`` | ``intel/2018b`` -``0.9.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``0.9.0`` | ``-Python-2.7.15`` | ``intel/2019a`` -``0.9.0`` | ``-Python-3.7.2`` | ``intel/2019a`` -``0.9.0`` | ``-Python-2.7.14`` | ``intelcuda/2017b`` -``0.9.0`` | ``-Python-3.6.3`` | ``intelcuda/2017b`` -``0.9.1`` | ``-Python-2.7.16`` | ``foss/2019b`` ``0.9.1`` | ``-Python-2.7.18`` | ``foss/2020b`` +``0.9.1`` | ``-Python-2.7.18`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SearchGUI.md b/docs/version-specific/supported-software/s/SearchGUI.md deleted file mode 100644 index febc46ec2d..0000000000 --- a/docs/version-specific/supported-software/s/SearchGUI.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SearchGUI - -SearchGUI is a user-friendly open-source graphical user interface for configuring and running proteomics identification search engines and de novo sequencing algorithms, currently supporting X! Tandem, MS-GF+, MS Amanda, MyriMatch, Comet, Tide, Andromeda, OMSSA, Novor and DirecTag. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.3.3`` | ``-Java-1.8.0_152`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/Seeder.md b/docs/version-specific/supported-software/s/Seeder.md deleted file mode 100644 index 346b5c802c..0000000000 --- a/docs/version-specific/supported-software/s/Seeder.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Seeder - -Seeder is a framework for DNA motif discovery. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.01`` | ``-Perl-5.28.1`` | ``GCCcore/8.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SeisSol.md b/docs/version-specific/supported-software/s/SeisSol.md deleted file mode 100644 index b019cd5ea8..0000000000 --- a/docs/version-specific/supported-software/s/SeisSol.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SeisSol - -SeisSol is a software package for simulating wave propagation and dynamic rupture based on the arbitrary high-order accurate derivative discontinuous Galerkin method (ADER-DG). - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``201703`` | ``-Python-2.7.15`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SelEstim.md b/docs/version-specific/supported-software/s/SelEstim.md deleted file mode 100644 index 4259f3d237..0000000000 --- a/docs/version-specific/supported-software/s/SelEstim.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SelEstim - -SelEstim is aimed at distinguishing neutral from selected polymorphisms and estimate the intensity of selection at the latter. The SelEstim model accounts explicitly for positive selection, and it is assumed that all marker loci in the dataset are responding to selection, to some extent - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.4`` | ``-Linux-64bits`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SentencePiece.md b/docs/version-specific/supported-software/s/SentencePiece.md index 17fa18a42b..3fcb39ac0d 100644 --- a/docs/version-specific/supported-software/s/SentencePiece.md +++ b/docs/version-specific/supported-software/s/SentencePiece.md @@ -8,16 +8,14 @@ Unsupervised text tokenizer for Neural Network-based text generation. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1.85`` | ``-Python-3.7.4`` | ``GCC/8.3.0`` -``0.1.94`` | ``-Python-3.8.2`` | ``GCC/9.3.0`` -``0.1.96`` | | ``GCC/10.2.0`` -``0.1.96`` | | ``GCC/10.3.0`` -``0.1.97`` | | ``GCC/11.3.0`` -``0.1.99`` | | ``GCC/12.2.0`` -``0.2.0`` | | ``GCC/12.3.0`` -``0.2.0`` | | ``GCC/13.2.0`` +version | toolchain +--------|---------- +``0.1.96`` | ``GCC/10.2.0`` +``0.1.96`` | ``GCC/10.3.0`` +``0.1.97`` | ``GCC/11.3.0`` +``0.1.99`` | ``GCC/12.2.0`` +``0.2.0`` | ``GCC/12.3.0`` +``0.2.0`` | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Seq-Gen.md b/docs/version-specific/supported-software/s/Seq-Gen.md deleted file mode 100644 index 2b22ff1c15..0000000000 --- a/docs/version-specific/supported-software/s/Seq-Gen.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Seq-Gen - -Seq-Gen is a program that will simulate the evolution of nucleotide or amino acid sequences along a phylogeny, using common models of the substitution process. - -*homepage*: - -version | toolchain ---------|---------- -``1.3.4`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SeqAn.md b/docs/version-specific/supported-software/s/SeqAn.md index bc9dc1c60f..35cf8388fb 100644 --- a/docs/version-specific/supported-software/s/SeqAn.md +++ b/docs/version-specific/supported-software/s/SeqAn.md @@ -11,14 +11,9 @@ SeqAn is an open source C++ library of efficient algorithms and data structures version | versionsuffix | toolchain --------|---------------|---------- ``1.4.2`` | ``-library`` | ``system`` -``2.3.2`` | | ``foss/2016b`` -``2.4.0`` | | ``GCC/8.2.0-2.31.1`` ``2.4.0`` | | ``GCCcore/10.2.0`` ``2.4.0`` | | ``GCCcore/11.2.0`` -``2.4.0`` | | ``GCCcore/8.3.0`` -``2.4.0`` | | ``GCCcore/9.3.0`` -``2.4.0`` | | ``foss/2018b`` -``2.4.0`` | | ``intel/2018b`` +``2.4.0`` | ``-Python-%(pyver)s`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SeqAn3.md b/docs/version-specific/supported-software/s/SeqAn3.md deleted file mode 100644 index 99bc1a98bd..0000000000 --- a/docs/version-specific/supported-software/s/SeqAn3.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SeqAn3 - -SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. Our library applies a unique generic design that guarantees high performance, generality, extensibility, and integration with other libraries. SeqAn is easy to use and simplifies the development of new software tools with a minimal loss of performance. - -*homepage*: - -version | toolchain ---------|---------- -``3.0.0`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SeqKit.md b/docs/version-specific/supported-software/s/SeqKit.md index bbf0bd1cfe..0a418085f5 100644 --- a/docs/version-specific/supported-software/s/SeqKit.md +++ b/docs/version-specific/supported-software/s/SeqKit.md @@ -11,7 +11,6 @@ SeqKit - a cross-platform and ultrafast toolkit for FASTA/Q file manipulation version | toolchain --------|---------- ``0.13.2`` | ``system`` -``0.8.1`` | ``system`` ``2.1.0`` | ``system`` ``2.2.0`` | ``system`` ``2.3.1`` | ``system`` diff --git a/docs/version-specific/supported-software/s/SeqLib.md b/docs/version-specific/supported-software/s/SeqLib.md index 315a13cd37..2e61b04758 100644 --- a/docs/version-specific/supported-software/s/SeqLib.md +++ b/docs/version-specific/supported-software/s/SeqLib.md @@ -14,7 +14,6 @@ version | toolchain ``1.2.0`` | ``GCC/10.3.0`` ``1.2.0`` | ``GCC/11.2.0`` ``1.2.0`` | ``GCC/12.3.0`` -``1.2.0`` | ``GCC/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SeqPrep.md b/docs/version-specific/supported-software/s/SeqPrep.md deleted file mode 100644 index 7ccd47cf7c..0000000000 --- a/docs/version-specific/supported-software/s/SeqPrep.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SeqPrep - -Tool for stripping adaptors and/or merging paired reads with overlap into single reads. - -*homepage*: - -version | toolchain ---------|---------- -``1.3.2`` | ``GCCcore/7.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/Seqmagick.md b/docs/version-specific/supported-software/s/Seqmagick.md index a106dfcaba..13c9619a9e 100644 --- a/docs/version-specific/supported-software/s/Seqmagick.md +++ b/docs/version-specific/supported-software/s/Seqmagick.md @@ -4,15 +4,13 @@ search: --- # Seqmagick -We often have to convert between sequence formats and do little tasks on them, and it's not worth writing scripts for that. Seqmagick is a kickass little utility built in the spirit of imagemagick to expose the file format conversion in Biopython in a convenient way. Instead of having a big mess of scripts, there is one that takes arguments. +We often have to convert between sequence formats and do little tasks on them, and it's not worth writing scripts for that. Seqmagick is a kickass little utility built in the spirit of imagemagick to expose the file format conversion in Biopython in a convenient way. Instead of having a big mess of scripts, there is one that takes arguments. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.6.1`` | ``-Python-2.7.11`` | ``foss/2016a`` -``0.6.2`` | ``-Python-2.7.15`` | ``foss/2018b`` -``0.8.6`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``0.8.6`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Serf.md b/docs/version-specific/supported-software/s/Serf.md index b299df5337..26989c613a 100644 --- a/docs/version-specific/supported-software/s/Serf.md +++ b/docs/version-specific/supported-software/s/Serf.md @@ -14,12 +14,6 @@ version | toolchain ``1.3.9`` | ``GCCcore/10.3.0`` ``1.3.9`` | ``GCCcore/11.2.0`` ``1.3.9`` | ``GCCcore/11.3.0`` -``1.3.9`` | ``GCCcore/7.3.0`` -``1.3.9`` | ``GCCcore/8.2.0`` -``1.3.9`` | ``GCCcore/9.3.0`` -``1.3.9`` | ``foss/2017b`` -``1.3.9`` | ``intel/2017b`` -``1.3.9`` | ``iomkl/2018a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Seurat.md b/docs/version-specific/supported-software/s/Seurat.md index ddf61d3e74..68b7ad9f36 100644 --- a/docs/version-specific/supported-software/s/Seurat.md +++ b/docs/version-specific/supported-software/s/Seurat.md @@ -6,15 +6,10 @@ search: Seurat is an R package designed for QC, analysis, and exploration of single cell RNA-seq data. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.4.0.16`` | ``-R-3.4.0`` | ``intel/2017a`` -``2.3.4`` | ``-R-3.5.1`` | ``foss/2018b`` -``2.3.4`` | ``-R-3.4.4`` | ``intel/2018a`` -``3.1.2`` | ``-R-3.6.0`` | ``foss/2019a`` -``3.1.5`` | ``-R-4.0.0`` | ``foss/2020a`` ``4.0.1`` | ``-R-4.0.3`` | ``foss/2020b`` ``4.0.3`` | ``-R-4.0.3`` | ``foss/2020b`` ``4.1.0`` | ``-R-4.1.0`` | ``foss/2021a`` diff --git a/docs/version-specific/supported-software/s/Shannon.md b/docs/version-specific/supported-software/s/Shannon.md deleted file mode 100644 index 7bf249d532..0000000000 --- a/docs/version-specific/supported-software/s/Shannon.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Shannon - -Shannon is a program for assembling transcripts from RNA-Seq data - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20170511`` | ``-Python-2.7.13`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/Shapely.md b/docs/version-specific/supported-software/s/Shapely.md index aa464274c6..d379bce5fe 100644 --- a/docs/version-specific/supported-software/s/Shapely.md +++ b/docs/version-specific/supported-software/s/Shapely.md @@ -8,20 +8,17 @@ Shapely is a BSD-licensed Python package for manipulation and analysis of planar *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.7.0`` | ``-Python-3.7.4`` | ``GCC/8.3.0`` -``1.7.0`` | ``-Python-3.7.2`` | ``foss/2019a`` -``1.7.0`` | ``-Python-3.7.4`` | ``iccifort/2019.5.281`` -``1.7.1`` | ``-Python-3.8.2`` | ``GCC/9.3.0`` -``1.8.1.post1`` | | ``GCC/11.2.0`` -``1.8.2`` | | ``foss/2021b`` -``1.8.2`` | | ``foss/2022a`` -``1.8a1`` | | ``GCC/10.2.0`` -``1.8a1`` | | ``GCC/10.3.0`` -``1.8a1`` | | ``iccifort/2020.4.304`` -``2.0.1`` | | ``foss/2022b`` -``2.0.1`` | | ``gfbf/2023a`` +version | toolchain +--------|---------- +``1.8.1.post1`` | ``GCC/11.2.0`` +``1.8.2`` | ``foss/2021b`` +``1.8.2`` | ``foss/2022a`` +``1.8a1`` | ``GCC/10.2.0`` +``1.8a1`` | ``GCC/10.3.0`` +``1.8a1`` | ``iccifort/2020.4.304`` +``2.0.1`` | ``foss/2022b`` +``2.0.1`` | ``gfbf/2023a`` +``2.0.6`` | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Short-Pair.md b/docs/version-specific/supported-software/s/Short-Pair.md index fbfe2f2c55..28250dfaf8 100644 --- a/docs/version-specific/supported-software/s/Short-Pair.md +++ b/docs/version-specific/supported-software/s/Short-Pair.md @@ -8,10 +8,9 @@ Sensitive Short Read Homology Search for Paired-End Reads *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``20170125`` | ``-Python-2.7.15`` | ``foss/2018b`` -``20170125`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``20170125`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SiNVICT.md b/docs/version-specific/supported-software/s/SiNVICT.md deleted file mode 100644 index 40b87b59db..0000000000 --- a/docs/version-specific/supported-software/s/SiNVICT.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SiNVICT - -SiNVICT is a tool for the detection of SNVs and indels from cfDNA/ctDNA samples obtained by ultra-deep sequencing. - -*homepage*: - -version | toolchain ---------|---------- -``1.0-20180817`` | ``GCC/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/Sibelia.md b/docs/version-specific/supported-software/s/Sibelia.md index e6bda0f6cd..f1bb1094dd 100644 --- a/docs/version-specific/supported-software/s/Sibelia.md +++ b/docs/version-specific/supported-software/s/Sibelia.md @@ -4,14 +4,12 @@ search: --- # Sibelia -Sibelia: A comparative genomics tool: It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt in different environments. Sibelia will also be helpful for the evolutionary and genome rearrangement studies for multiple strains of microorganisms. +Sibelia: A comparative genomics tool: It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt in different environments. Sibelia will also be helpful for the evolutionary and genome rearrangement studies for multiple strains of microorganisms. *homepage*: version | toolchain --------|---------- -``3.0.6`` | ``foss/2016b`` -``3.0.7`` | ``foss/2018b`` ``3.0.7`` | ``foss/2020b`` diff --git a/docs/version-specific/supported-software/s/Siesta.md b/docs/version-specific/supported-software/s/Siesta.md index 1bc9ba8438..9fd86b3c84 100644 --- a/docs/version-specific/supported-software/s/Siesta.md +++ b/docs/version-specific/supported-software/s/Siesta.md @@ -6,25 +6,15 @@ search: SIESTA is both a method and its computer program implementation, to perform efficient electronic structure calculations and ab initio molecular dynamics simulations of molecules and solids. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.0`` | | ``foss/2017b`` -``4.0`` | | ``intel/2017a`` -``4.0.1`` | | ``intel/2017a`` -``4.1-MaX-1.0`` | ``-PEXSI`` | ``intel/2019b`` -``4.1-MaX-1.0`` | | ``intel/2019b`` -``4.1-b2`` | | ``intel/2017a`` -``4.1-b3`` | | ``intel/2017a`` -``4.1-b4`` | | ``foss/2018b`` -``4.1-b4`` | | ``intel/2018b`` -``4.1.5`` | | ``foss/2020a`` -``4.1.5`` | | ``foss/2021a`` -``4.1.5`` | | ``foss/2021b`` -``4.1.5`` | | ``foss/2022a`` -``4.1.5`` | | ``intel/2020a`` -``4.1.5`` | | ``intel/2022a`` +version | toolchain +--------|---------- +``4.1.5`` | ``foss/2021a`` +``4.1.5`` | ``foss/2021b`` +``4.1.5`` | ``foss/2022a`` +``4.1.5`` | ``intel/2022a`` +``5.2.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SignalP.md b/docs/version-specific/supported-software/s/SignalP.md index 5c53fae83a..bddad18bbe 100644 --- a/docs/version-specific/supported-software/s/SignalP.md +++ b/docs/version-specific/supported-software/s/SignalP.md @@ -15,6 +15,8 @@ version | versionsuffix | toolchain ``6.0g`` | ``-fast-CUDA-11.7.0`` | ``foss/2022a`` ``6.0g`` | ``-fast`` | ``foss/2022a`` ``6.0h`` | ``-fast`` | ``foss/2022b`` +``6.0h`` | ``-CUDA-12.1.1-fast`` | ``foss/2023a`` +``6.0h`` | ``-fast`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SimPEG.md b/docs/version-specific/supported-software/s/SimPEG.md index aa86749ee0..3cd15e5018 100644 --- a/docs/version-specific/supported-software/s/SimPEG.md +++ b/docs/version-specific/supported-software/s/SimPEG.md @@ -4,16 +4,14 @@ search: --- # SimPEG -Simulation and Parameter Estimation in Geophysics - A python package for simulation and gradient based parameter estimation in the context of geophysical applications. +An open source Python package for simulation and gradient based parameter estimation in geophysical applications. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.14.1`` | ``-Python-3.8.2`` | ``intel/2020a`` -``0.18.1`` | | ``foss/2021b`` -``0.18.1`` | | ``intel/2021b`` -``0.3.1`` | ``-Python-2.7.12`` | ``intel/2016b`` +version | toolchain +--------|---------- +``0.18.1`` | ``foss/2021b`` +``0.18.1`` | ``intel/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SimVascular.md b/docs/version-specific/supported-software/s/SimVascular.md deleted file mode 100644 index 56407799d1..0000000000 --- a/docs/version-specific/supported-software/s/SimVascular.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SimVascular - -SimVascular is an open source software suite for cardiovascular simulation, providing a complete pipeline from medical image data to 3D model construction, meshing, and blood flow simulation. - -*homepage*: - -version | toolchain ---------|---------- -``2.16.0406`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/Simple-DFTD3.md b/docs/version-specific/supported-software/s/Simple-DFTD3.md index 2c45dde54e..fb9d1b14a9 100644 --- a/docs/version-specific/supported-software/s/Simple-DFTD3.md +++ b/docs/version-specific/supported-software/s/Simple-DFTD3.md @@ -11,6 +11,7 @@ Reimplementation of the D3 dispersion correction. The s-dftd3 project aims to pr version | toolchain --------|---------- ``0.7.0`` | ``foss/2022a`` +``1.2.1`` | ``gfbf/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SimpleElastix.md b/docs/version-specific/supported-software/s/SimpleElastix.md deleted file mode 100644 index 186298b5e9..0000000000 --- a/docs/version-specific/supported-software/s/SimpleElastix.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SimpleElastix - -Multi-lingual medical image registration library. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.0`` | ``-Python-3.6.3`` | ``foss/2017b`` -``0.10.0`` | ``-Python-3.6.4`` | ``foss/2018a`` -``1.1.0`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SimpleITK.md b/docs/version-specific/supported-software/s/SimpleITK.md index fc6a896c31..fab3b2be01 100644 --- a/docs/version-specific/supported-software/s/SimpleITK.md +++ b/docs/version-specific/supported-software/s/SimpleITK.md @@ -4,22 +4,18 @@ search: --- # SimpleITK -ITK is an open-source, cross-platform system that provides developers with an extensive suite of software tools for image analysis. Among them, SimpleITK is a simplified layer built on top of ITK, intended to facilitate its use in rapid prototyping, education, interpreted languages. +SimpleITK is a simplified programming interface to the algorithms and data structures of the Insight Toolkit (ITK). *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.0`` | ``-Python-3.6.4`` | ``foss/2018a`` -``1.1.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.1.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.2.4`` | ``-Python-3.7.4`` | ``foss/2019b`` -``2.1.0`` | | ``foss/2020b`` -``2.1.0`` | | ``fosscuda/2020b`` -``2.1.1`` | | ``foss/2021a`` -``2.1.1.2`` | | ``foss/2021b`` -``2.1.1.2`` | | ``foss/2022a`` -``2.3.1`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``2.1.0`` | ``foss/2020b`` +``2.1.0`` | ``fosscuda/2020b`` +``2.1.1`` | ``foss/2021a`` +``2.1.1.2`` | ``foss/2021b`` +``2.1.1.2`` | ``foss/2022a`` +``2.3.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SingleM.md b/docs/version-specific/supported-software/s/SingleM.md index bb3fb29596..214b14d168 100644 --- a/docs/version-specific/supported-software/s/SingleM.md +++ b/docs/version-specific/supported-software/s/SingleM.md @@ -4,14 +4,13 @@ search: --- # SingleM -SingleM is a tool to find the abundances of discrete operational taxonomic units (OTUs) directly from shotgun metagenome data, without heavy reliance on reference sequence databases. +SingleM is a tool for profiling shotgun metagenomes. It has a particular strength in detecting microbial lineages which are not in reference databases. The method it uses also makes it suitable for some related tasks, such as assessing eukaryotic contamination, finding bias in genome recovery, computing ecological diversity metrics, and lineage-targeted MAG recovery. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.12.1`` | ``-Python-2.7.15`` | ``intel/2019a`` -``0.16.0`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``0.16.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Singular.md b/docs/version-specific/supported-software/s/Singular.md index fed6646058..79dc0ae5da 100644 --- a/docs/version-specific/supported-software/s/Singular.md +++ b/docs/version-specific/supported-software/s/Singular.md @@ -10,7 +10,6 @@ Singular is a computer algebra system for polynomial computations, with special version | toolchain --------|---------- -``4.1.2`` | ``GCC/8.2.0-2.31.1`` ``4.1.2`` | ``system`` ``4.3.2p10`` | ``gfbf/2022a`` ``4.4.0`` | ``gfbf/2023b`` diff --git a/docs/version-specific/supported-software/s/Slideflow.md b/docs/version-specific/supported-software/s/Slideflow.md new file mode 100644 index 0000000000..ec6e1a0a0b --- /dev/null +++ b/docs/version-specific/supported-software/s/Slideflow.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Slideflow + +Slideflow is a Python package that provides a unified API for building and testing deep learning models for histopathology, supporting both Tensorflow/Keras and PyTorch. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``3.0.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/SlurmViewer.md b/docs/version-specific/supported-software/s/SlurmViewer.md new file mode 100644 index 0000000000..ab9b7e4c74 --- /dev/null +++ b/docs/version-specific/supported-software/s/SlurmViewer.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# SlurmViewer + +View the status of a Slurm cluster, including nodes and queue. + +*homepage*: + +version | toolchain +--------|---------- +``1.0.1`` | ``GCCcore/13.2.0`` +``1.0.2`` | ``GCCcore/13.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/Smoldyn.md b/docs/version-specific/supported-software/s/Smoldyn.md deleted file mode 100644 index 50da99e33e..0000000000 --- a/docs/version-specific/supported-software/s/Smoldyn.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Smoldyn - -Smoldyn is a computer program for cell-scale biochemical simulations. It simulates each molecule of interest individually to capture natural stochasticity and to yield nanometer-scale spatial resolution. It treats other molecules implicitly, enabling it to simulate hundreds of thousands of molecules over several minutes of real time. Simulated molecules diffuse, react, are confined by surfaces, and bind to membranes much as they would in a real biological system. - -*homepage*: - -version | toolchain ---------|---------- -``2.48`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/Sniffles.md b/docs/version-specific/supported-software/s/Sniffles.md index 95edd1c540..a504d6721f 100644 --- a/docs/version-specific/supported-software/s/Sniffles.md +++ b/docs/version-specific/supported-software/s/Sniffles.md @@ -11,6 +11,7 @@ A fast structural variant caller for long-read sequencing, Sniffles2 accurately version | toolchain --------|---------- ``2.0.7`` | ``GCC/11.3.0`` +``2.4`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SoX.md b/docs/version-specific/supported-software/s/SoX.md index 36c88164bc..d1a8fb69c5 100644 --- a/docs/version-specific/supported-software/s/SoX.md +++ b/docs/version-specific/supported-software/s/SoX.md @@ -4,15 +4,15 @@ search: --- # SoX -SoX is the Swiss Army Knife of sound processing utilities. It can convert audio files to other popular audio file types and also apply sound effects and filters during the conversion. +Sound eXchange, the Swiss Army knife of audio manipulation -*homepage*: +*homepage*: version | toolchain --------|---------- -``14.4.2`` | ``GCC/8.3.0`` ``14.4.2`` | ``GCCcore/11.3.0`` ``14.4.2`` | ``GCCcore/12.3.0`` +``14.4.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SolexaQA++.md b/docs/version-specific/supported-software/s/SolexaQA++.md deleted file mode 100644 index 7ae8687351..0000000000 --- a/docs/version-specific/supported-software/s/SolexaQA++.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SolexaQA++ - -SolexaQA calculates sequence quality statistics and creates visual representations of data quality for second-generation sequencing data. Originally developed for the Illumina system (historically known as “Solexa”), SolexaQA now also supports Ion Torrent and 454 data. - -*homepage*: - -version | toolchain ---------|---------- -``3.1.5`` | ``foss/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/Solids4foam.md b/docs/version-specific/supported-software/s/Solids4foam.md new file mode 100644 index 0000000000..3a63d5a979 --- /dev/null +++ b/docs/version-specific/supported-software/s/Solids4foam.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Solids4foam + +A toolbox for performing solid mechanics and fluid-solid interactions in OpenFOAM. + +*homepage*: + +version | toolchain +--------|---------- +``2.1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/SortMeRNA.md b/docs/version-specific/supported-software/s/SortMeRNA.md deleted file mode 100644 index c4b6dc2a02..0000000000 --- a/docs/version-specific/supported-software/s/SortMeRNA.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SortMeRNA - -SortMeRNA is a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads. - -*homepage*: - -version | toolchain ---------|---------- -``2.1`` | ``GCC/9.3.0`` -``2.1`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SpaceRanger.md b/docs/version-specific/supported-software/s/SpaceRanger.md index 68b2bb80fe..08532c6a2b 100644 --- a/docs/version-specific/supported-software/s/SpaceRanger.md +++ b/docs/version-specific/supported-software/s/SpaceRanger.md @@ -10,8 +10,6 @@ Space Ranger is a set of analysis pipelines that process Visium spatial RNA-seq version | toolchain --------|---------- -``1.1.0`` | ``GCC/9.3.0`` -``1.2.2`` | ``GCC/9.3.0`` ``1.3.0`` | ``GCC/10.3.0`` ``1.3.1`` | ``GCC/11.2.0`` ``2.0.0`` | ``GCC/11.2.0`` diff --git a/docs/version-specific/supported-software/s/Spack.md b/docs/version-specific/supported-software/s/Spack.md index 5994b0c2be..a299177064 100644 --- a/docs/version-specific/supported-software/s/Spack.md +++ b/docs/version-specific/supported-software/s/Spack.md @@ -10,9 +10,6 @@ Spack is a package manager for supercomputers, Linux, and macOS. It makes instal version | toolchain --------|---------- -``0.10.0`` | ``system`` -``0.11.2`` | ``system`` -``0.12.1`` | ``system`` ``0.16.2`` | ``system`` ``0.17.0`` | ``system`` ``0.17.2`` | ``system`` diff --git a/docs/version-specific/supported-software/s/Spark.md b/docs/version-specific/supported-software/s/Spark.md index 34687132af..484c90a84b 100644 --- a/docs/version-specific/supported-software/s/Spark.md +++ b/docs/version-specific/supported-software/s/Spark.md @@ -6,30 +6,10 @@ search: Spark is Hadoop MapReduce done in memory -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.3.0`` | | ``system`` -``1.4.1`` | | ``system`` -``1.5.0`` | | ``system`` -``1.6.0`` | | ``system`` -``1.6.1`` | | ``system`` -``2.0.0`` | | ``system`` -``2.0.2`` | | ``system`` -``2.2.0`` | ``-Hadoop-2.6-Java-1.8.0_144`` | ``system`` -``2.2.0`` | ``-Hadoop-2.6-Java-1.8.0_152`` | ``system`` -``2.2.0`` | ``-Hadoop-2.6-Java-1.8.0_152-Python-3.6.3`` | ``intel/2017b`` -``2.3.0`` | ``-Hadoop-2.7-Java-1.8.0_162`` | ``system`` -``2.4.0`` | ``-Hadoop-2.7-Java-1.8`` | ``system`` -``2.4.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``2.4.0`` | ``-Hadoop-2.7-Java-1.8-Python-3.6.6`` | ``intel/2018b`` -``2.4.0`` | ``-Python-2.7.15`` | ``intel/2018b`` -``2.4.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``2.4.5`` | ``-Python-3.7.4-Java-1.8`` | ``intel/2019b`` -``3.0.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``3.0.0`` | ``-Python-2.7.15`` | ``intel/2018b`` -``3.1.1`` | ``-Python-3.8.2`` | ``foss/2020a`` ``3.1.1`` | | ``foss/2020b`` ``3.1.1`` | | ``fosscuda/2020b`` ``3.2.1`` | | ``foss/2021b`` diff --git a/docs/version-specific/supported-software/s/Spectre.md b/docs/version-specific/supported-software/s/Spectre.md new file mode 100644 index 0000000000..10f26bf910 --- /dev/null +++ b/docs/version-specific/supported-software/s/Spectre.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Spectre + +Spectre is a long read copy number variation (CNV) caller. Spectre is designed to detect large CNVs (>100kb) in a couple of minutes depending on your hardware. + +*homepage*: + +version | toolchain +--------|---------- +``0.2.1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/Sphinx.md b/docs/version-specific/supported-software/s/Sphinx.md deleted file mode 100644 index f5a81d5e71..0000000000 --- a/docs/version-specific/supported-software/s/Sphinx.md +++ /dev/null @@ -1,27 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Sphinx - -Sphinx is a tool that makes it easy to create intelligent and beautiful documentation. It was originally created for the new Python documentation, and it has excellent facilities for the documentation of Python projects, but C/C++ is already supported as well, and it is planned to add special support for other languages as well. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.4.8`` | ``-Python-2.7.11`` | ``foss/2016a`` -``1.4.8`` | ``-Python-3.5.1`` | ``foss/2016a`` -``1.8.1`` | ``-Python-2.7.14`` | ``foss/2017b`` -``1.8.1`` | ``-Python-3.6.3`` | ``foss/2017b`` -``1.8.1`` | ``-Python-3.6.4`` | ``foss/2018a`` -``1.8.1`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.8.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.8.1`` | ``-Python-2.7.14`` | ``intel/2017b`` -``1.8.1`` | ``-Python-3.6.3`` | ``intel/2017b`` -``1.8.1`` | ``-Python-3.6.6`` | ``intel/2018b`` -``1.8.3`` | ``-Python-3.6.4`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SpiceyPy.md b/docs/version-specific/supported-software/s/SpiceyPy.md deleted file mode 100644 index 98f0a3b831..0000000000 --- a/docs/version-specific/supported-software/s/SpiceyPy.md +++ /dev/null @@ -1,21 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SpiceyPy - -SpiceyPy is a Python wrapper for the NAIF C SPICE Toolkit (N65) - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.1.1`` | ``-Python-3.6.1`` | ``intel/2017a`` -``2.1.0`` | ``-Python-3.6.3`` | ``foss/2017b`` -``2.1.0`` | ``-Python-3.6.4`` | ``foss/2018a`` -``2.1.0`` | ``-Python-3.6.3`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SpiecEasi.md b/docs/version-specific/supported-software/s/SpiecEasi.md index e3dd75021e..ac0f88294c 100644 --- a/docs/version-specific/supported-software/s/SpiecEasi.md +++ b/docs/version-specific/supported-software/s/SpiecEasi.md @@ -10,9 +10,7 @@ Sparse InversE Covariance estimation for Ecological Association and Statistical version | versionsuffix | toolchain --------|---------------|---------- -``1.0.0`` | ``-R-3.4.4`` | ``intel/2018a`` ``1.1.1`` | ``-R-4.2.1`` | ``foss/2022a`` -``20160830`` | ``-R-3.3.1`` | ``intel/2016b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SplAdder.md b/docs/version-specific/supported-software/s/SplAdder.md deleted file mode 100644 index 5c47e67ece..0000000000 --- a/docs/version-specific/supported-software/s/SplAdder.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SplAdder - -Splicing Adder is a toolbox for alternative splicing analysis based on RNA-Seq alignment data. Briefly, the software takes a given annotation and RNA-Seq read alignments in standardized formats, transforms the annotation into a splicing graph representation, augments the splicing graph with additional information extracted from the read data, extracts alternative splicing events from the graph and quantifies the events based on the alignment data. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.4.2`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SpliceMap.md b/docs/version-specific/supported-software/s/SpliceMap.md deleted file mode 100644 index 1681bcfcda..0000000000 --- a/docs/version-specific/supported-software/s/SpliceMap.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SpliceMap - -SpliceMap is a de novo splice junction discovery and alignment tool. It offers high sensitivity and support for arbitrary RNA-seq read lengths. - -*homepage*: - -version | toolchain ---------|---------- -``3.3.5.2`` | ``GCC/7.3.0-2.30`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/Spyder.md b/docs/version-specific/supported-software/s/Spyder.md index f0a74977fe..79a37d87d4 100644 --- a/docs/version-specific/supported-software/s/Spyder.md +++ b/docs/version-specific/supported-software/s/Spyder.md @@ -8,13 +8,9 @@ Spyder is an interactive Python development environment providing MATLAB-like fe *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.1.4`` | ``-Python-2.7.13`` | ``intel/2017a`` -``3.3.1`` | ``-Python-3.6.4`` | ``foss/2018a`` -``3.3.2`` | ``-Python-3.6.6`` | ``foss/2018b`` -``4.1.5`` | ``-Python-3.7.2`` | ``foss/2019a`` -``4.1.5`` | ``-Python-3.8.2`` | ``foss/2020a`` +version | toolchain +--------|---------- +``6.0.1`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SqueezeMeta.md b/docs/version-specific/supported-software/s/SqueezeMeta.md index be8d1c5477..bb7e0f6692 100644 --- a/docs/version-specific/supported-software/s/SqueezeMeta.md +++ b/docs/version-specific/supported-software/s/SqueezeMeta.md @@ -8,11 +8,9 @@ SqueezeMeta is a full automatic pipeline for metagenomics/metatranscriptomics, *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.4.3`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.0.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.5.0`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``1.5.0`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/StaMPS.md b/docs/version-specific/supported-software/s/StaMPS.md deleted file mode 100644 index c5283e2ef5..0000000000 --- a/docs/version-specific/supported-software/s/StaMPS.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# StaMPS - -A software package to extract ground displacements from time series of synthetic aperture radar (SAR) acquisitions. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.3b1`` | ``-Perl-5.24.1`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/Stable-Baselines3.md b/docs/version-specific/supported-software/s/Stable-Baselines3.md index e1c5c3477a..2e569c3691 100644 --- a/docs/version-specific/supported-software/s/Stable-Baselines3.md +++ b/docs/version-specific/supported-software/s/Stable-Baselines3.md @@ -4,13 +4,14 @@ search: --- # Stable-Baselines3 -Stable Baselines3 (SB3) is a set of reliable implementations of reinforcement learning algorithms in PyTorch. +Stable Baselines3 (SB3) is a set of reliable implementations of reinforcement learning algorithms in PyTorch. *homepage*: -version | toolchain ---------|---------- -``2.3.2`` | ``foss/2023a`` +version | versionsuffix | toolchain +--------|---------------|---------- +``2.3.2`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``2.3.2`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Stacks.md b/docs/version-specific/supported-software/s/Stacks.md index b41ac2e4c3..6d3099a068 100644 --- a/docs/version-specific/supported-software/s/Stacks.md +++ b/docs/version-specific/supported-software/s/Stacks.md @@ -6,35 +6,12 @@ search: Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.40`` | ``foss/2016a`` -``1.42`` | ``foss/2016a`` -``1.44`` | ``foss/2016a`` -``1.45`` | ``foss/2016a`` -``1.46`` | ``intel/2017a`` -``1.47`` | ``foss/2016a`` -``1.48`` | ``intel/2017b`` -``1.48`` | ``intel/2018b`` -``2.0`` | ``foss/2018a`` -``2.0`` | ``intel/2018a`` -``2.0Beta10a`` | ``foss/2018a`` -``2.0Beta7c`` | ``intel/2017b`` -``2.0Beta8c`` | ``intel/2017b`` -``2.0Beta9`` | ``intel/2018a`` -``2.2`` | ``foss/2018a`` -``2.3b`` | ``foss/2018a`` -``2.3e`` | ``foss/2018b`` -``2.41`` | ``GCC/8.2.0-2.31.1`` -``2.41`` | ``foss/2018b`` -``2.41`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``2.5`` | ``iccifort/2019.5.281`` -``2.53`` | ``foss/2019b`` -``2.53`` | ``iccifort/2019.5.281`` -``2.54`` | ``foss/2020a`` ``2.62`` | ``foss/2022a`` +``2.68`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Stampy.md b/docs/version-specific/supported-software/s/Stampy.md deleted file mode 100644 index fcff80c8c2..0000000000 --- a/docs/version-specific/supported-software/s/Stampy.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Stampy - -Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genome. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.31`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.0.32`` | ``-Python-2.7.14`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/Stata.md b/docs/version-specific/supported-software/s/Stata.md index f5772c9596..00618b8c96 100644 --- a/docs/version-specific/supported-software/s/Stata.md +++ b/docs/version-specific/supported-software/s/Stata.md @@ -10,7 +10,6 @@ Stata is a complete, integrated statistical software package that provides every version | versionsuffix | toolchain --------|---------------|---------- -``15`` | | ``system`` ``16`` | ``-legacy`` | ``system`` ``17`` | | ``system`` diff --git a/docs/version-specific/supported-software/s/Statistics-R.md b/docs/version-specific/supported-software/s/Statistics-R.md index 1690384a48..b90ce6a2bc 100644 --- a/docs/version-specific/supported-software/s/Statistics-R.md +++ b/docs/version-specific/supported-software/s/Statistics-R.md @@ -10,7 +10,7 @@ Perl interface with the R statistical program version | toolchain --------|---------- -``0.34`` | ``foss/2020a`` +``0.34`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Stellarscope.md b/docs/version-specific/supported-software/s/Stellarscope.md new file mode 100644 index 0000000000..519046730b --- /dev/null +++ b/docs/version-specific/supported-software/s/Stellarscope.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Stellarscope + +Single-cell Transposable Element Locus Level Analysis of scRNA Sequencing. + +*homepage*: + +version | toolchain +--------|---------- +``1.4.1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/StringTie.md b/docs/version-specific/supported-software/s/StringTie.md index a01b0da9b3..0410741635 100644 --- a/docs/version-specific/supported-software/s/StringTie.md +++ b/docs/version-specific/supported-software/s/StringTie.md @@ -4,28 +4,16 @@ search: --- # StringTie -StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. +StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.3.0`` | | ``intel/2016b`` -``1.3.3`` | | ``GCCcore/6.4.0`` -``1.3.3`` | | ``intel/2017a`` -``1.3.3b`` | | ``foss/2016b`` -``1.3.5`` | | ``GCCcore/8.2.0`` -``1.3.5`` | | ``foss/2018b`` -``2.0.3`` | | ``GCCcore/7.3.0`` -``2.1.0`` | | ``foss/2018b`` -``2.1.1`` | | ``GCC/8.3.0`` -``2.1.3`` | | ``GCC/8.3.0`` -``2.1.3`` | | ``GCC/9.3.0`` -``2.1.4`` | | ``GCC/8.3.0`` -``2.1.4`` | | ``GCC/9.3.0`` ``2.1.7`` | | ``GCC/10.3.0`` ``2.2.1`` | ``-Python-2.7.18`` | ``GCC/11.2.0`` ``2.2.1`` | | ``GCC/11.2.0`` +``2.2.3`` | | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Structure.md b/docs/version-specific/supported-software/s/Structure.md index 2876064fae..dd729c8a4b 100644 --- a/docs/version-specific/supported-software/s/Structure.md +++ b/docs/version-specific/supported-software/s/Structure.md @@ -12,9 +12,6 @@ version | toolchain --------|---------- ``2.3.4`` | ``GCC/11.3.0`` ``2.3.4`` | ``GCC/12.2.0`` -``2.3.4`` | ``GCC/8.2.0-2.31.1`` -``2.3.4`` | ``iccifort/2019.3.199-GCC-8.3.0-2.32`` -``2.3.4`` | ``iccifort/2019.5.281`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Subread.md b/docs/version-specific/supported-software/s/Subread.md index 56fb418b09..9f83698d20 100644 --- a/docs/version-specific/supported-software/s/Subread.md +++ b/docs/version-specific/supported-software/s/Subread.md @@ -10,17 +10,11 @@ High performance read alignment, quantification and mutation discovery version | toolchain --------|---------- -``1.5.0-p1`` | ``foss/2016a`` -``1.5.0-p1`` | ``foss/2016b`` -``1.6.3`` | ``foss/2018b`` -``1.6.4`` | ``foss/2018b`` -``2.0.0`` | ``GCC/7.3.0-2.30`` -``2.0.0`` | ``GCC/8.3.0`` ``2.0.2`` | ``GCC/10.2.0`` ``2.0.3`` | ``GCC/10.3.0`` ``2.0.3`` | ``GCC/11.2.0`` -``2.0.3`` | ``GCC/9.3.0`` ``2.0.4`` | ``GCC/11.3.0`` +``2.0.6`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Subversion.md b/docs/version-specific/supported-software/s/Subversion.md index c0a001c9fc..ba9d35c6bc 100644 --- a/docs/version-specific/supported-software/s/Subversion.md +++ b/docs/version-specific/supported-software/s/Subversion.md @@ -6,20 +6,14 @@ search: Subversion is an open source version control system. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.10.0`` | ``foss/2017b`` -``1.10.0`` | ``intel/2017b`` -``1.12.0`` | ``GCCcore/8.2.0`` ``1.14.0`` | ``GCCcore/10.2.0`` -``1.14.0`` | ``GCCcore/9.3.0`` ``1.14.1`` | ``GCCcore/10.3.0`` ``1.14.1`` | ``GCCcore/11.2.0`` ``1.14.2`` | ``GCCcore/11.3.0`` -``1.9.7`` | ``iomkl/2018a`` -``1.9.9`` | ``GCCcore/7.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SuiteSparse.md b/docs/version-specific/supported-software/s/SuiteSparse.md index 8f8cca4477..a7d0bd0c0d 100644 --- a/docs/version-specific/supported-software/s/SuiteSparse.md +++ b/docs/version-specific/supported-software/s/SuiteSparse.md @@ -6,36 +6,10 @@ search: SuiteSparse is a collection of libraries manipulate sparse matrices. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``4.5.1`` | ``-METIS-5.1.0`` | ``foss/2016a`` -``4.5.1`` | ``-METIS-5.1.0`` | ``intel/2016a`` -``4.5.2`` | ``-METIS-5.1.0`` | ``foss/2016a`` -``4.5.2`` | ``-METIS-5.1.0`` | ``intel/2016a`` -``4.5.3`` | ``-METIS-5.1.0`` | ``foss/2016a`` -``4.5.3`` | ``-ParMETIS-4.0.3`` | ``foss/2016a`` -``4.5.3`` | ``-METIS-5.1.0`` | ``foss/2016b`` -``4.5.3`` | ``-ParMETIS-4.0.3`` | ``foss/2016b`` -``4.5.3`` | ``-ParMETIS-4.0.3`` | ``intel/2016a`` -``4.5.3`` | ``-METIS-5.1.0`` | ``intel/2016b`` -``4.5.3`` | ``-ParMETIS-4.0.3`` | ``intel/2016b`` -``4.5.5`` | ``-METIS-5.1.0`` | ``foss/2017a`` -``4.5.5`` | ``-ParMETIS-4.0.3`` | ``foss/2017a`` -``4.5.5`` | ``-ParMETIS-4.0.3`` | ``foss/2017b`` -``4.5.5`` | ``-METIS-5.1.0`` | ``intel/2017a`` -``4.5.5`` | ``-ParMETIS-4.0.3`` | ``intel/2017a`` -``4.5.5`` | ``-ParMETIS-4.0.3`` | ``intel/2017b`` -``4.5.6`` | ``-METIS-5.1.0`` | ``foss/2017b`` -``5.1.2`` | ``-METIS-5.1.0`` | ``foss/2017b`` -``5.1.2`` | ``-ParMETIS-4.0.3`` | ``foss/2017b`` -``5.1.2`` | ``-METIS-5.1.0`` | ``foss/2018a`` -``5.1.2`` | ``-METIS-5.1.0`` | ``foss/2018b`` -``5.1.2`` | ``-METIS-5.1.0`` | ``intel/2017b`` -``5.1.2`` | ``-ParMETIS-4.0.3`` | ``intel/2017b`` -``5.1.2`` | ``-METIS-5.1.0`` | ``intel/2018a`` -``5.1.2`` | ``-METIS-5.1.0`` | ``intel/2018b`` ``5.10.1`` | ``-METIS-5.1.0-CUDA-11.3.1`` | ``foss/2021a`` ``5.10.1`` | ``-METIS-5.1.0`` | ``foss/2021a`` ``5.10.1`` | ``-METIS-5.1.0`` | ``foss/2021b`` @@ -43,17 +17,11 @@ version | versionsuffix | toolchain ``5.10.1`` | ``-METIS-5.1.0`` | ``intel/2021b`` ``5.13.0`` | ``-METIS-5.1.0`` | ``foss/2022a`` ``5.13.0`` | ``-METIS-5.1.0`` | ``foss/2022b`` -``5.4.0`` | ``-METIS-5.1.0`` | ``foss/2019a`` -``5.4.0`` | ``-METIS-5.1.0`` | ``intel/2018b`` -``5.4.0`` | ``-METIS-5.1.0`` | ``intel/2019a`` -``5.6.0`` | ``-METIS-5.1.0`` | ``foss/2019b`` -``5.6.0`` | ``-METIS-5.1.0`` | ``intel/2019b`` -``5.7.1`` | ``-METIS-5.1.0`` | ``foss/2020a`` -``5.7.1`` | ``-METIS-5.1.0`` | ``intel/2020a`` ``5.8.1`` | ``-METIS-5.1.0`` | ``foss/2020b`` ``5.8.1`` | ``-METIS-5.1.0`` | ``intel/2020b`` ``7.1.0`` | | ``foss/2023a`` ``7.7.0`` | ``-METIS-5.1.0`` | ``foss/2023b`` +``7.8.2`` | ``-METIS-5.1.0`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SunPy.md b/docs/version-specific/supported-software/s/SunPy.md deleted file mode 100644 index 81c553f05d..0000000000 --- a/docs/version-specific/supported-software/s/SunPy.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SunPy - -The community-developed, free and open-source solar data analysis environment for Python. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.3`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SuperLU.md b/docs/version-specific/supported-software/s/SuperLU.md index 07fa050da2..cbb3ac976f 100644 --- a/docs/version-specific/supported-software/s/SuperLU.md +++ b/docs/version-specific/supported-software/s/SuperLU.md @@ -6,16 +6,10 @@ search: SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines. -*homepage*: +*homepage*: version | toolchain --------|---------- -``5.1.1`` | ``foss/2016a`` -``5.1.1`` | ``intel/2016a`` -``5.2.1`` | ``foss/2017b`` -``5.2.1`` | ``intel/2017b`` -``5.2.2`` | ``foss/2020a`` -``5.2.2`` | ``intel/2020a`` ``5.3.0`` | ``foss/2020b`` ``5.3.0`` | ``foss/2021a`` ``5.3.0`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/s/SuperLU_DIST.md b/docs/version-specific/supported-software/s/SuperLU_DIST.md index 5e58ed2346..5716c15cb7 100644 --- a/docs/version-specific/supported-software/s/SuperLU_DIST.md +++ b/docs/version-specific/supported-software/s/SuperLU_DIST.md @@ -8,15 +8,12 @@ SuperLU is a general purpose library for the direct solution of large, sparse, n *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``5.4.0`` | ``-trisolve-merge`` | ``intel/2020a`` -``6.4.0`` | | ``foss/2020a`` -``6.4.0`` | | ``intel/2020a`` -``8.1.0`` | | ``foss/2022a`` -``8.1.2`` | | ``foss/2022b`` -``8.1.2`` | | ``foss/2023a`` -``8.2.1`` | | ``foss/2023b`` +version | toolchain +--------|---------- +``8.1.0`` | ``foss/2022a`` +``8.1.2`` | ``foss/2022b`` +``8.1.2`` | ``foss/2023a`` +``8.2.1`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Suppressor.md b/docs/version-specific/supported-software/s/Suppressor.md new file mode 100644 index 0000000000..0384d331e6 --- /dev/null +++ b/docs/version-specific/supported-software/s/Suppressor.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Suppressor + +Julia macros for suppressing and/or capturing output (STDOUT), warnings (STDERR) or both streams at the same time. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``0.2.4`` | ``-Julia-1.9.2`` | ``system`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/SymEngine.md b/docs/version-specific/supported-software/s/SymEngine.md index 79a3cb2c69..90102534ef 100644 --- a/docs/version-specific/supported-software/s/SymEngine.md +++ b/docs/version-specific/supported-software/s/SymEngine.md @@ -8,12 +8,10 @@ SymEngine is a standalone fast C++ symbolic manipulation library *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.11.2`` | | ``gfbf/2023b`` -``0.3.0`` | ``-20181006`` | ``intel/2018a`` -``0.4.0`` | | ``GCC/8.2.0-2.31.1`` -``0.7.0`` | | ``GCC/10.3.0`` +version | toolchain +--------|---------- +``0.11.2`` | ``gfbf/2023b`` +``0.7.0`` | ``GCC/10.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Szip.md b/docs/version-specific/supported-software/s/Szip.md index 08969265ca..77f62c9c54 100644 --- a/docs/version-specific/supported-software/s/Szip.md +++ b/docs/version-specific/supported-software/s/Szip.md @@ -6,25 +6,10 @@ search: Szip compression software, providing lossless compression of scientific data -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.1`` | ``GCC/4.8.1`` -``2.1`` | ``GCCcore/5.4.0`` -``2.1`` | ``foss/2016a`` -``2.1`` | ``foss/2016b`` -``2.1`` | ``foss/2017a`` -``2.1`` | ``gimkl/2.11.5`` -``2.1`` | ``gimkl/2017a`` -``2.1`` | ``gmpolf/2017.10`` -``2.1`` | ``intel/2016.02-GCC-4.9`` -``2.1`` | ``intel/2016a`` -``2.1`` | ``intel/2016b`` -``2.1`` | ``intel/2017.01`` -``2.1`` | ``intel/2017a`` -``2.1`` | ``iomkl/2016.07`` -``2.1`` | ``iomkl/2016.09-GCC-4.9.3-2.25`` ``2.1.1`` | ``GCCcore/10.2.0`` ``2.1.1`` | ``GCCcore/10.3.0`` ``2.1.1`` | ``GCCcore/11.2.0`` @@ -32,12 +17,7 @@ version | toolchain ``2.1.1`` | ``GCCcore/12.2.0`` ``2.1.1`` | ``GCCcore/12.3.0`` ``2.1.1`` | ``GCCcore/13.2.0`` -``2.1.1`` | ``GCCcore/6.3.0`` -``2.1.1`` | ``GCCcore/6.4.0`` -``2.1.1`` | ``GCCcore/7.3.0`` -``2.1.1`` | ``GCCcore/8.2.0`` -``2.1.1`` | ``GCCcore/8.3.0`` -``2.1.1`` | ``GCCcore/9.3.0`` +``2.1.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/index.md b/docs/version-specific/supported-software/s/index.md index 359cccc9e2..ab4fbdc193 100644 --- a/docs/version-specific/supported-software/s/index.md +++ b/docs/version-specific/supported-software/s/index.md @@ -8,27 +8,19 @@ search: - * [S-Lang](S-Lang.md) * [s3fs](s3fs.md) - * [S4](S4.md) * [Sabre](Sabre.md) * [safestringlib](safestringlib.md) * [Safetensors](Safetensors.md) - * [SAGE](SAGE.md) * [Sagemath](Sagemath.md) - * [Sailfish](Sailfish.md) - * [SALib](SALib.md) * [Salmon](Salmon.md) - * [SALMON-TDDFT](SALMON-TDDFT.md) * [Sambamba](Sambamba.md) * [samblaster](samblaster.md) - * [Samcef](Samcef.md) * [samclip](samclip.md) * [samplot](samplot.md) * [SAMtools](SAMtools.md) * [sansa](sansa.md) * [SAP](SAP.md) - * [SAS](SAS.md) * [Satsuma2](Satsuma2.md) * [savvy](savvy.md) * [Saxon-HE](Saxon-HE.md) @@ -37,7 +29,6 @@ search: * [ScaFaCoS](ScaFaCoS.md) * [ScaLAPACK](ScaLAPACK.md) * [Scalasca](Scalasca.md) - * [SCALCE](SCALCE.md) * [Scalene](Scalene.md) * [scanpy](scanpy.md) * [scArches](scArches.md) @@ -52,82 +43,62 @@ search: * [scGSVA](scGSVA.md) * [scHiCExplorer](scHiCExplorer.md) * [Schrodinger](Schrodinger.md) + * [SciANN](SciANN.md) * [scib](scib.md) * [scib-metrics](scib-metrics.md) - * [sciClone](sciClone.md) - * [ScientificPython](ScientificPython.md) + * [SciKeras](SciKeras.md) * [scikit-allel](scikit-allel.md) * [scikit-bio](scikit-bio.md) * [scikit-build](scikit-build.md) * [scikit-build-core](scikit-build-core.md) - * [scikit-cuda](scikit-cuda.md) * [scikit-extremes](scikit-extremes.md) * [scikit-image](scikit-image.md) * [scikit-learn](scikit-learn.md) * [scikit-lego](scikit-lego.md) * [scikit-misc](scikit-misc.md) - * [scikit-multilearn](scikit-multilearn.md) * [scikit-optimize](scikit-optimize.md) * [scikit-plot](scikit-plot.md) - * [scikit-uplift](scikit-uplift.md) * [SCIP](SCIP.md) - * [SCIPhI](SCIPhI.md) - * [scipy](scipy.md) * [SciPy-bundle](SciPy-bundle.md) * [SciTools-Iris](SciTools-Iris.md) - * [SCnorm](SCnorm.md) + * [scNanoGPS](scNanoGPS.md) * [Scoary](Scoary.md) * [SCons](SCons.md) - * [SCOOP](SCOOP.md) * [SCopeLoomR](SCopeLoomR.md) * [Score-P](Score-P.md) * [SCOTCH](SCOTCH.md) - * [scp](scp.md) * [scPred](scPred.md) - * [Scrappie](Scrappie.md) * [SCReadCounts](SCReadCounts.md) + * [screen](screen.md) + * [SCRIPro](SCRIPro.md) * [scrublet](scrublet.md) + * [scTIE](scTIE.md) * [scVelo](scVelo.md) * [scvi-tools](scvi-tools.md) - * [Scythe](Scythe.md) - * [SDCC](SDCC.md) - * [SDL](SDL.md) * [SDL2](SDL2.md) * [SDL2_gfx](SDL2_gfx.md) * [SDL2_image](SDL2_image.md) * [SDL2_mixer](SDL2_mixer.md) * [SDL2_ttf](SDL2_ttf.md) - * [SDL_image](SDL_image.md) - * [SDSL](SDSL.md) * [sdsl-lite](sdsl-lite.md) * [Seaborn](Seaborn.md) * [SEACells](SEACells.md) - * [SearchGUI](SearchGUI.md) * [SeaView](SeaView.md) - * [SECAPR](SECAPR.md) - * [Seeder](Seeder.md) * [segemehl](segemehl.md) * [segment-anything](segment-anything.md) - * [segmentation-models](segmentation-models.md) * [segmentation-models-pytorch](segmentation-models-pytorch.md) - * [SeisSol](SeisSol.md) - * [SelEstim](SelEstim.md) * [SELFIES](SELFIES.md) * [SemiBin](SemiBin.md) * [semla](semla.md) + * [sensormotion](sensormotion.md) * [Sentence-Transformers](Sentence-Transformers.md) * [SentencePiece](SentencePiece.md) * [sentinelsat](sentinelsat.md) - * [sep](sep.md) * [SEPP](SEPP.md) - * [Seq-Gen](Seq-Gen.md) - * [seq2HLA](seq2HLA.md) * [SeqAn](SeqAn.md) - * [SeqAn3](SeqAn3.md) * [SeqKit](SeqKit.md) * [SeqLib](SeqLib.md) * [Seqmagick](Seqmagick.md) - * [SeqPrep](SeqPrep.md) * [seqtk](seqtk.md) * [Serf](Serf.md) * [setuptools](setuptools.md) @@ -136,27 +107,18 @@ search: * [SeuratData](SeuratData.md) * [SeuratDisk](SeuratDisk.md) * [SeuratWrappers](SeuratWrappers.md) - * [sf](sf.md) * [sfftk](sfftk.md) - * [Shannon](Shannon.md) * [SHAP](SHAP.md) - * [shapAAR](shapAAR.md) - * [SHAPEIT](SHAPEIT.md) * [SHAPEIT4](SHAPEIT4.md) * [Shapely](Shapely.md) * [SharedMeatAxe](SharedMeatAxe.md) - * [sharutils](sharutils.md) * [Shasta](Shasta.md) * [ShengBTE](ShengBTE.md) - * [shift](shift.md) - * [SHORE](SHORE.md) * [Short-Pair](Short-Pair.md) * [shovill](shovill.md) * [shrinkwrap](shrinkwrap.md) * [SHTns](SHTns.md) * [Sibelia](Sibelia.md) - * [SICER2](SICER2.md) - * [sickle](sickle.md) * [Siesta](Siesta.md) * [SignalP](SignalP.md) * [silhouetteRank](silhouetteRank.md) @@ -167,48 +129,41 @@ search: * [SimPEG](SimPEG.md) * [SIMPLE](SIMPLE.md) * [Simple-DFTD3](Simple-DFTD3.md) - * [SimpleElastix](SimpleElastix.md) * [SimpleITK](SimpleITK.md) - * [simpy](simpy.md) * [Simstrat](Simstrat.md) - * [SimVascular](SimVascular.md) * [Single-cell-python-bundle](Single-cell-python-bundle.md) * [SingleM](SingleM.md) * [Singular](Singular.md) * [sinto](sinto.md) - * [SiNVICT](SiNVICT.md) * [SIONlib](SIONlib.md) * [SIP](SIP.md) * [SIRIUS](SIRIUS.md) * [sirocco](sirocco.md) * [siscone](siscone.md) + * [sisl](sisl.md) * [SISSO](SISSO.md) * [SISSO++](SISSO++.md) * [SKA2](SKA2.md) + * [skani](skani.md) * [SKESA](SKESA.md) - * [sketchmap](sketchmap.md) - * [skewer](skewer.md) * [sklearn-pandas](sklearn-pandas.md) * [sklearn-som](sklearn-som.md) * [skorch](skorch.md) * [sktime](sktime.md) * [SlamDunk](SlamDunk.md) - * [SLATEC](SLATEC.md) * [SLEPc](SLEPc.md) * [slepc4py](slepc4py.md) * [sleuth](sleuth.md) - * [slidingwindow](slidingwindow.md) + * [Slideflow](Slideflow.md) * [SLiM](SLiM.md) * [slow5tools](slow5tools.md) * [slurm-drmaa](slurm-drmaa.md) + * [SlurmViewer](SlurmViewer.md) * [smafa](smafa.md) - * [smallgenomeutilities](smallgenomeutilities.md) * [SMAP](SMAP.md) - * [SMARTdenovo](SMARTdenovo.md) * [SMC++](SMC++.md) * [smfishHmrf](smfishHmrf.md) * [smithwaterman](smithwaterman.md) - * [Smoldyn](Smoldyn.md) * [smooth-topk](smooth-topk.md) * [SMRT-Link](SMRT-Link.md) * [SMV](SMV.md) @@ -218,26 +173,19 @@ search: * [SNAP-ESA-python](SNAP-ESA-python.md) * [SNAP-HMM](SNAP-HMM.md) * [SNAPE-pooled](SNAPE-pooled.md) - * [snaphu](snaphu.md) * [snappy](snappy.md) * [Sniffles](Sniffles.md) * [snippy](snippy.md) * [snp-sites](snp-sites.md) * [snpEff](snpEff.md) - * [SNPhylo](SNPhylo.md) - * [SNPomatic](SNPomatic.md) - * [SOAPaligner](SOAPaligner.md) + * [SNPTEST](SNPTEST.md) * [SOAPdenovo-Trans](SOAPdenovo-Trans.md) - * [SOAPdenovo2](SOAPdenovo2.md) - * [SOAPfuse](SOAPfuse.md) - * [socat](socat.md) * [SOCI](SOCI.md) - * [SolexaQA++](SolexaQA++.md) + * [Solids4foam](Solids4foam.md) * [solo](solo.md) * [sonic](sonic.md) * [SoPlex](SoPlex.md) * [SoQt](SoQt.md) - * [SortMeRNA](SortMeRNA.md) * [SoupX](SoupX.md) * [SoX](SoX.md) * [SoXt](SoXt.md) @@ -253,64 +201,51 @@ search: * [spatialreg](spatialreg.md) * [spdlog](spdlog.md) * [SpectrA](SpectrA.md) - * [spectral.methods](spectral.methods.md) + * [Spectre](Spectre.md) * [speech_tools](speech_tools.md) * [SPEI](SPEI.md) * [spektral](spektral.md) * [SpFFT](SpFFT.md) * [spglib](spglib.md) * [spglib-python](spglib-python.md) - * [Sphinx](Sphinx.md) * [Sphinx-RTD-Theme](Sphinx-RTD-Theme.md) - * [SpiceyPy](SpiceyPy.md) * [SpiecEasi](SpiecEasi.md) * [spla](spla.md) - * [SplAdder](SplAdder.md) - * [SPLASH](SPLASH.md) - * [SpliceMap](SpliceMap.md) - * [split-seq](split-seq.md) - * [splitRef](splitRef.md) * [SPM](SPM.md) * [spoa](spoa.md) * [SPOOLES](SPOOLES.md) * [SPOTPY](SPOTPY.md) * [SPRNG](SPRNG.md) * [Spyder](Spyder.md) + * [sPyRMSD](sPyRMSD.md) * [SQLAlchemy](SQLAlchemy.md) * [SQLite](SQLite.md) + * [squashfs-tools](squashfs-tools.md) * [SqueezeMeta](SqueezeMeta.md) * [Squidpy](Squidpy.md) * [SRA-Toolkit](SRA-Toolkit.md) * [sradownloader](sradownloader.md) * [SRPRISM](SRPRISM.md) * [SRST2](SRST2.md) - * [SSAHA2](SSAHA2.md) - * [SSN](SSN.md) * [SSPACE_Basic](SSPACE_Basic.md) * [SSW](SSW.md) * [Stable-Baselines3](Stable-Baselines3.md) * [STACEY](STACEY.md) * [Stack](Stack.md) * [Stacks](Stacks.md) - * [STAMP](STAMP.md) - * [StaMPS](StaMPS.md) - * [Stampy](Stampy.md) * [STAR](STAR.md) * [STAR-CCM+](STAR-CCM+.md) - * [STAR-Fusion](STAR-Fusion.md) + * [starcode](starcode.md) * [stardist](stardist.md) * [starparser](starparser.md) - * [stars](stars.md) * [Stata](Stata.md) * [Statistics-R](Statistics-R.md) * [statsmodels](statsmodels.md) * [STEAK](STEAK.md) - * [STIR](STIR.md) - * [stpipeline](stpipeline.md) + * [Stellarscope](Stellarscope.md) * [strace](strace.md) * [Strainberry](Strainberry.md) * [STREAM](STREAM.md) - * [strelka](strelka.md) * [StringTie](StringTie.md) * [stripy](stripy.md) * [STRique](STRique.md) @@ -324,37 +259,26 @@ search: * [subset-bam](subset-bam.md) * [subunit](subunit.md) * [Subversion](Subversion.md) - * [suds](suds.md) * [SuiteSparse](SuiteSparse.md) - * [SUMACLUST](SUMACLUST.md) - * [SUMATRA](SUMATRA.md) * [SUMO](SUMO.md) * [SUNDIALS](SUNDIALS.md) - * [SunPy](SunPy.md) * [SuperLU](SuperLU.md) * [SuperLU_DIST](SuperLU_DIST.md) - * [supermagic](supermagic.md) - * [supernova](supernova.md) * [SUPPA](SUPPA.md) + * [Suppressor](Suppressor.md) * [SURVIVOR](SURVIVOR.md) * [SVclone](SVclone.md) - * [SVDetect](SVDetect.md) - * [SVDquest](SVDquest.md) * [SVDSS2](SVDSS2.md) * [SVG](SVG.md) * [SVIM](SVIM.md) * [svist4get](svist4get.md) - * [swarm](swarm.md) - * [SWASH](SWASH.md) * [SWAT+](SWAT+.md) * [swifter](swifter.md) * [SWIG](SWIG.md) * [SWIPE](SWIPE.md) - * [swissknife](swissknife.md) * [SymEngine](SymEngine.md) * [SymEngine-python](SymEngine-python.md) * [SYMMETRICA](SYMMETRICA.md) - * [SYMPHONY](SYMPHONY.md) * [sympy](sympy.md) * [synapseclient](synapseclient.md) * [synthcity](synthcity.md) diff --git a/docs/version-specific/supported-software/s/s3fs.md b/docs/version-specific/supported-software/s/s3fs.md index 0ddc32e75c..16fc2dc1a0 100644 --- a/docs/version-specific/supported-software/s/s3fs.md +++ b/docs/version-specific/supported-software/s/s3fs.md @@ -11,6 +11,7 @@ S3FS builds on aiobotocore to provide a convenient Python filesystem interface f version | toolchain --------|---------- ``2023.12.2`` | ``foss/2023a`` +``2024.9.0`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/sPyRMSD.md b/docs/version-specific/supported-software/s/sPyRMSD.md new file mode 100644 index 0000000000..ef6e8f09cd --- /dev/null +++ b/docs/version-specific/supported-software/s/sPyRMSD.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# sPyRMSD + +sPyRMSD is a Python tool for symmetry-corrected RMSD calculations. + +*homepage*: + +version | toolchain +--------|---------- +``0.8.0`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/safestringlib.md b/docs/version-specific/supported-software/s/safestringlib.md index 5719dcf78b..668373b2db 100644 --- a/docs/version-specific/supported-software/s/safestringlib.md +++ b/docs/version-specific/supported-software/s/safestringlib.md @@ -10,6 +10,8 @@ The Secure Development Lifecycle (SDL) recommends banning certain C Library func version | toolchain --------|---------- +``20240228`` | ``GCC/11.2.0`` +``20240228`` | ``GCC/13.3.0`` ``20240228`` | ``intel-compilers/2023.1.0`` diff --git a/docs/version-specific/supported-software/s/samblaster.md b/docs/version-specific/supported-software/s/samblaster.md index dcaaf2f0f4..ea1fab0921 100644 --- a/docs/version-specific/supported-software/s/samblaster.md +++ b/docs/version-specific/supported-software/s/samblaster.md @@ -10,7 +10,6 @@ samblaster is a fast and flexible program for marking duplicates in read-id gro version | toolchain --------|---------- -``0.1.24`` | ``foss/2018b`` ``0.1.26`` | ``GCC/10.2.0`` ``0.1.26`` | ``GCC/10.3.0`` ``0.1.26`` | ``GCC/11.3.0`` diff --git a/docs/version-specific/supported-software/s/samclip.md b/docs/version-specific/supported-software/s/samclip.md index bb4eaf44cb..9b1007daa0 100644 --- a/docs/version-specific/supported-software/s/samclip.md +++ b/docs/version-specific/supported-software/s/samclip.md @@ -4,16 +4,15 @@ search: --- # samclip -Filter SAM file for soft and hard clipped alignments +Filter SAM file for soft and hard clipped alignments. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.2`` | ``-Perl-5.28.0`` | ``GCCcore/7.3.0`` -``0.4.0`` | | ``GCCcore/10.2.0`` -``0.4.0`` | | ``GCCcore/11.2.0`` -``0.4.0`` | | ``GCCcore/9.3.0`` +version | toolchain +--------|---------- +``0.4.0`` | ``GCCcore/10.2.0`` +``0.4.0`` | ``GCCcore/11.2.0`` +``0.4.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/savvy.md b/docs/version-specific/supported-software/s/savvy.md index e99ab8abcf..1ea48e7ae6 100644 --- a/docs/version-specific/supported-software/s/savvy.md +++ b/docs/version-specific/supported-software/s/savvy.md @@ -10,7 +10,7 @@ Interface to various variant calling formats. version | toolchain --------|---------- -``1.3.0`` | ``GCC/8.2.0-2.31.1`` +``2.1.0`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/sbt.md b/docs/version-specific/supported-software/s/sbt.md index fc836639f4..e90d63544f 100644 --- a/docs/version-specific/supported-software/s/sbt.md +++ b/docs/version-specific/supported-software/s/sbt.md @@ -10,7 +10,6 @@ sbt is a build tool for Scala, Java, and more. version | versionsuffix | toolchain --------|---------------|---------- -``1.0.2`` | ``-Java-1.8.0_152`` | ``system`` ``1.3.13`` | ``-Java-1.8`` | ``system`` ``1.3.13`` | ``-Java-8`` | ``system`` ``1.6.2`` | ``-Java-8`` | ``system`` diff --git a/docs/version-specific/supported-software/s/scGSVA.md b/docs/version-specific/supported-software/s/scGSVA.md index 2592cde90e..cacc1f144b 100644 --- a/docs/version-specific/supported-software/s/scGSVA.md +++ b/docs/version-specific/supported-software/s/scGSVA.md @@ -4,7 +4,7 @@ search: --- # scGSVA -scGSVA provides wrap functions to do GSVA analysis for single cell data. And scGSVA includes functions to build annotation for almost all species. scGSVA also provides function to generate figures based on the GSVA results. +scGSVA provides wrap functions to do GSVA analysis for single cell data. And scGSVA includes functions to build annotation for almost all species. scGSVA also provides function to generate figures based on the GSVA results. *homepage*: diff --git a/docs/version-specific/supported-software/s/scNanoGPS.md b/docs/version-specific/supported-software/s/scNanoGPS.md new file mode 100644 index 0000000000..25fbd7e959 --- /dev/null +++ b/docs/version-specific/supported-software/s/scNanoGPS.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# scNanoGPS + +Single cell Nanopore sequencing data for Genotype and Phenotype. + +*homepage*: + +version | toolchain +--------|---------- +``1.1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/a/APBS.md b/docs/version-specific/supported-software/s/scTIE.md similarity index 61% rename from docs/version-specific/supported-software/a/APBS.md rename to docs/version-specific/supported-software/s/scTIE.md index a577e5cdc8..288eaa16fe 100644 --- a/docs/version-specific/supported-software/a/APBS.md +++ b/docs/version-specific/supported-software/s/scTIE.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# APBS +# scTIE -APBS is a software package for modeling biomolecular solvation through solution of the Poisson-Boltzmann equation (PBE), one of the most popular continuum models for describing electrostatic interactions between molecular solutes in salty, aqueous media. +scTIE (single-cell Temporal Integration and inference of multimodal Experiments) is an autoencoder-based method for integrating multimodal profiling of scRNA-seq and scATAC-seq data over a time course and inferring cell-type specific GRNs. scTIE projects cells from all time points into a common embedding space, followed by extracting interpretable information from this space to predict cell trajectories. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.4`` | ``-linux-static-x86_64`` | ``system`` +``20231205`` | ``-CUDA-12.1.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/scVelo.md b/docs/version-specific/supported-software/s/scVelo.md index 565898c1c8..3fdba80ea6 100644 --- a/docs/version-specific/supported-software/s/scVelo.md +++ b/docs/version-specific/supported-software/s/scVelo.md @@ -8,11 +8,11 @@ scVelo is a scalable toolkit for estimating and analyzing RNA velocities in sing *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1.24`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.2.3`` | | ``foss/2021a`` -``0.3.1`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``0.2.3`` | ``foss/2021a`` +``0.2.5`` | ``foss/2022a`` +``0.3.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/sciClone.md b/docs/version-specific/supported-software/s/sciClone.md deleted file mode 100644 index 2ce11223e8..0000000000 --- a/docs/version-specific/supported-software/s/sciClone.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# sciClone - -An R package for inferring the subclonal architecture of tumors - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1`` | ``-R-3.5.1`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/scikit-allel.md b/docs/version-specific/supported-software/s/scikit-allel.md index 0ac2e77bed..af5d577bb5 100644 --- a/docs/version-specific/supported-software/s/scikit-allel.md +++ b/docs/version-specific/supported-software/s/scikit-allel.md @@ -4,16 +4,14 @@ search: --- # scikit-allel -This package provides utilities for exploratory analysis of large scale genetic variation data. It is based on numpy, scipy and other general-purpose Python scientific libraries. +This package provides utilities for exploratory analysis of large scale genetic variation data. It is based on numpy, scipy and other general-purpose Python scientific libraries. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.8`` | ``-Python-2.7.13`` | ``foss/2017a`` -``1.2.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``1.3.2`` | | ``foss/2020b`` -``1.3.3`` | | ``foss/2021a`` +version | toolchain +--------|---------- +``1.3.2`` | ``foss/2020b`` +``1.3.3`` | ``foss/2021a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/scikit-bio.md b/docs/version-specific/supported-software/s/scikit-bio.md index d6d0f00af8..40ecb3ca85 100644 --- a/docs/version-specific/supported-software/s/scikit-bio.md +++ b/docs/version-specific/supported-software/s/scikit-bio.md @@ -8,14 +8,13 @@ scikit-bio is an open-source, BSD-licensed Python 3 package providing data struc *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.5.6`` | ``-Python-3.8.2`` | ``foss/2020a`` -``0.5.7`` | | ``foss/2020b`` -``0.5.7`` | | ``foss/2021a`` -``0.5.7`` | | ``foss/2021b`` -``0.5.7`` | | ``foss/2022a`` -``0.6.0`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``0.5.7`` | ``foss/2020b`` +``0.5.7`` | ``foss/2021a`` +``0.5.7`` | ``foss/2021b`` +``0.5.7`` | ``foss/2022a`` +``0.6.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/scikit-build-core.md b/docs/version-specific/supported-software/s/scikit-build-core.md index 8fe193b020..516902bcf7 100644 --- a/docs/version-specific/supported-software/s/scikit-build-core.md +++ b/docs/version-specific/supported-software/s/scikit-build-core.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``0.10.6`` | ``GCCcore/13.3.0`` ``0.5.0`` | ``GCCcore/12.3.0`` +``0.9.3`` | ``GCCcore/12.3.0`` ``0.9.3`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/s/scikit-build.md b/docs/version-specific/supported-software/s/scikit-build.md index 78b3f432ca..30fd983e53 100644 --- a/docs/version-specific/supported-software/s/scikit-build.md +++ b/docs/version-specific/supported-software/s/scikit-build.md @@ -4,30 +4,26 @@ search: --- # scikit-build -Scikit-Build, or skbuild, is an improved build system generator for CPython C/C++/Fortran/Cython extensions. +Scikit-Build, or skbuild, is an improved build system generator for CPython C/C++/Fortran/Cython extensions. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.10.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``0.10.0`` | ``-Python-3.8.2`` | ``fosscuda/2020a`` -``0.10.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``0.11.1`` | | ``GCCcore/10.3.0`` -``0.11.1`` | | ``GCCcore/11.2.0`` -``0.11.1`` | | ``foss/2020b`` -``0.11.1`` | | ``fosscuda/2020b`` -``0.11.1`` | | ``intel/2020b`` -``0.11.1`` | | ``intelcuda/2020b`` -``0.15.0`` | | ``GCCcore/10.2.0`` -``0.15.0`` | | ``GCCcore/10.3.0`` -``0.15.0`` | | ``GCCcore/11.2.0`` -``0.15.0`` | | ``GCCcore/11.3.0`` -``0.17.2`` | | ``GCCcore/12.2.0`` -``0.17.6`` | | ``GCCcore/12.3.0`` -``0.17.6`` | | ``GCCcore/13.2.0`` -``0.17.6`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``0.11.1`` | ``GCCcore/10.3.0`` +``0.11.1`` | ``GCCcore/11.2.0`` +``0.11.1`` | ``foss/2020b`` +``0.11.1`` | ``fosscuda/2020b`` +``0.11.1`` | ``intel/2020b`` +``0.11.1`` | ``intelcuda/2020b`` +``0.15.0`` | ``GCCcore/10.2.0`` +``0.15.0`` | ``GCCcore/10.3.0`` +``0.15.0`` | ``GCCcore/11.2.0`` +``0.15.0`` | ``GCCcore/11.3.0`` +``0.17.2`` | ``GCCcore/12.2.0`` +``0.17.6`` | ``GCCcore/12.3.0`` +``0.17.6`` | ``GCCcore/13.2.0`` +``0.17.6`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/scikit-cuda.md b/docs/version-specific/supported-software/s/scikit-cuda.md deleted file mode 100644 index e0cfefcbdf..0000000000 --- a/docs/version-specific/supported-software/s/scikit-cuda.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# scikit-cuda - -SciKit-cuda, a.k.a. skcuda, provides Python interfaces to many of the functions in the CUDA device/runtime, CUBLAS, CUFFT, and CUSOLVER libraries distributed as part of NVIDIA's CUDA Programming Toolkit. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.5.3`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/scikit-extremes.md b/docs/version-specific/supported-software/s/scikit-extremes.md index 37e00b5702..3a792aca52 100644 --- a/docs/version-specific/supported-software/s/scikit-extremes.md +++ b/docs/version-specific/supported-software/s/scikit-extremes.md @@ -4,7 +4,7 @@ search: --- # scikit-extremes -scikit-extremes is a basic statistical package to perform univariate extreme value calculations using Python +scikit-extremes is a basic statistical package to perform univariate extreme value calculations using Python *homepage*: diff --git a/docs/version-specific/supported-software/s/scikit-image.md b/docs/version-specific/supported-software/s/scikit-image.md index d4c74ee207..2dc6b5b9e6 100644 --- a/docs/version-specific/supported-software/s/scikit-image.md +++ b/docs/version-specific/supported-software/s/scikit-image.md @@ -6,38 +6,21 @@ search: scikit-image is a collection of algorithms for image processing. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.12.3`` | ``-Python-2.7.11`` | ``foss/2016a`` -``0.12.3`` | ``-Python-3.5.2`` | ``foss/2016b`` -``0.12.3`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.12.3`` | ``-Python-3.5.2`` | ``intel/2016b`` -``0.13.0`` | ``-Python-3.6.3`` | ``foss/2017b`` -``0.13.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``0.13.0`` | ``-Python-3.6.1`` | ``intel/2017a`` -``0.13.1`` | ``-Python-3.6.3`` | ``foss/2017b`` -``0.13.1`` | ``-Python-3.6.4`` | ``foss/2018a`` -``0.13.1`` | ``-Python-2.7.14`` | ``intel/2017b`` -``0.14.0`` | ``-Python-3.6.4`` | ``intel/2018a`` -``0.14.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.14.1`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` -``0.14.1`` | ``-Python-3.6.6`` | ``intel/2018b`` -``0.15.0`` | ``-Python-3.7.2`` | ``foss/2019a`` -``0.16.2`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.16.2`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``0.16.2`` | ``-Python-3.7.4`` | ``intel/2019b`` -``0.17.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``0.18.1`` | | ``foss/2020b`` -``0.18.1`` | | ``fosscuda/2020b`` -``0.18.1`` | | ``intel/2020b`` -``0.18.1`` | | ``intelcuda/2020b`` -``0.18.3`` | | ``foss/2021a`` -``0.19.1`` | | ``foss/2021b`` -``0.19.3`` | | ``foss/2022a`` -``0.21.0`` | | ``foss/2022b`` -``0.22.0`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``0.18.1`` | ``foss/2020b`` +``0.18.1`` | ``fosscuda/2020b`` +``0.18.1`` | ``intel/2020b`` +``0.18.1`` | ``intelcuda/2020b`` +``0.18.3`` | ``foss/2021a`` +``0.19.1`` | ``foss/2021b`` +``0.19.3`` | ``foss/2022a`` +``0.21.0`` | ``foss/2022b`` +``0.22.0`` | ``foss/2023a`` +``0.24.0`` | ``foss/2023b`` +``0.25.0`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/scikit-learn.md b/docs/version-specific/supported-software/s/scikit-learn.md index 4c1f80cc5a..979ea7ac05 100644 --- a/docs/version-specific/supported-software/s/scikit-learn.md +++ b/docs/version-specific/supported-software/s/scikit-learn.md @@ -10,54 +10,9 @@ Scikit-learn integrates machine learning algorithms in the tightly-knit scientif version | versionsuffix | toolchain --------|---------------|---------- -``0.16.1`` | ``-Python-2.7.13`` | ``foss/2017a`` -``0.17.1`` | ``-Python-2.7.11`` | ``foss/2016a`` -``0.17.1`` | ``-Python-3.5.1`` | ``foss/2016a`` -``0.17.1`` | ``-Python-2.7.11-freetype-2.6.3`` | ``intel/2016a`` -``0.17.1`` | ``-Python-2.7.11`` | ``intel/2016a`` -``0.17.1`` | ``-Python-3.5.1`` | ``intel/2016a`` -``0.17.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.18`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.18`` | ``-Python-3.5.2`` | ``intel/2016b`` -``0.18.1`` | ``-Python-2.7.12`` | ``foss/2016b`` -``0.18.1`` | ``-Python-3.5.2`` | ``foss/2016b`` -``0.18.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.18.1`` | ``-Python-3.5.2`` | ``intel/2016b`` -``0.18.1`` | ``-Python-2.7.13`` | ``intel/2017a`` -``0.18.1`` | ``-Python-3.6.1`` | ``intel/2017a`` -``0.18.2`` | ``-Python-3.6.1`` | ``intel/2017a`` -``0.19.0`` | ``-Python-3.6.1`` | ``intel/2017a`` -``0.19.1`` | ``-Python-2.7.13`` | ``foss/2017a`` -``0.19.1`` | ``-Python-2.7.14`` | ``foss/2017b`` -``0.19.1`` | ``-Python-3.6.3`` | ``foss/2017b`` -``0.19.1`` | ``-Python-3.6.4`` | ``foss/2018a`` -``0.19.1`` | ``-Python-2.7.14`` | ``fosscuda/2017b`` -``0.19.1`` | ``-Python-3.6.3`` | ``fosscuda/2017b`` -``0.19.1`` | ``-Python-2.7.14`` | ``intel/2017b`` -``0.19.1`` | ``-Python-3.6.3`` | ``intel/2017b`` -``0.19.1`` | ``-Python-3.6.4`` | ``intel/2018a`` -``0.19.1`` | ``-Python-2.7.14`` | ``intelcuda/2017b`` -``0.19.1`` | ``-Python-3.6.3`` | ``intelcuda/2017b`` -``0.20.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``0.20.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.20.0`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` -``0.20.0`` | ``-Python-2.7.15`` | ``intel/2018b`` -``0.20.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``0.20.2`` | ``-Python-2.7.15`` | ``foss/2018b`` -``0.20.2`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.20.3`` | | ``foss/2019a`` -``0.20.3`` | | ``fosscuda/2019a`` -``0.20.3`` | | ``intel/2019a`` ``0.20.4`` | ``-Python-2.7.18`` | ``foss/2020b`` ``0.20.4`` | ``-Python-2.7.18`` | ``foss/2021b`` -``0.20.4`` | ``-Python-2.7.16`` | ``intel/2019b`` -``0.21.3`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.21.3`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``0.21.3`` | ``-Python-3.7.4`` | ``intel/2019b`` -``0.23.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``0.23.1`` | ``-Python-3.8.2`` | ``fosscuda/2020a`` -``0.23.1`` | ``-Python-3.8.2`` | ``intel/2020a`` -``0.23.1`` | ``-Python-3.8.2`` | ``intelcuda/2020a`` +``0.20.4`` | ``-Python-2.7.18`` | ``foss/2023a`` ``0.23.2`` | | ``foss/2020b`` ``0.23.2`` | | ``fosscuda/2020b`` ``0.23.2`` | | ``intel/2020b`` @@ -75,6 +30,7 @@ version | versionsuffix | toolchain ``1.3.2`` | | ``gfbf/2023b`` ``1.4.0`` | | ``gfbf/2023b`` ``1.4.2`` | | ``gfbf/2023a`` +``1.5.2`` | | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/scikit-multilearn.md b/docs/version-specific/supported-software/s/scikit-multilearn.md deleted file mode 100644 index de31381cfe..0000000000 --- a/docs/version-specific/supported-software/s/scikit-multilearn.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# scikit-multilearn - -Scikit-multilearn is a BSD-licensed library for multi-label classification that is built on top of the well-known scikit-learn ecosystem. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.2.0`` | ``-Python-3.6.6`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/scikit-optimize.md b/docs/version-specific/supported-software/s/scikit-optimize.md index 6fbe67ba4f..abce3c4563 100644 --- a/docs/version-specific/supported-software/s/scikit-optimize.md +++ b/docs/version-specific/supported-software/s/scikit-optimize.md @@ -8,13 +8,10 @@ Scikit-Optimize, or skopt, is a simple and efficient library to minimize (very) *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.5.2`` | ``-Python-3.6.6`` | ``intel/2018b`` -``0.7.4`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.8.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``0.9.0`` | | ``foss/2021a`` -``0.9.0`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``0.9.0`` | ``foss/2021a`` +``0.9.0`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/scikit-uplift.md b/docs/version-specific/supported-software/s/scikit-uplift.md deleted file mode 100644 index 642fb84a73..0000000000 --- a/docs/version-specific/supported-software/s/scikit-uplift.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# scikit-uplift - -scikit-uplift is a Python module for classic approaches for uplift modeling built on top of scikit-learn. Uplift prediction aims to estimate the causal impact of a treatment at the individual level. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.2.0`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/scipy.md b/docs/version-specific/supported-software/s/scipy.md deleted file mode 100644 index ce7107cd7f..0000000000 --- a/docs/version-specific/supported-software/s/scipy.md +++ /dev/null @@ -1,21 +0,0 @@ ---- -search: - boost: 0.5 ---- -# scipy - -SciPy is a collection of mathematical algorithms and convenience functions built on the Numpy extension for Python. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.16.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.17.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``0.19.0`` | ``-Python-3.5.2`` | ``intel/2016b`` -``1.4.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.4.1`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/scp.md b/docs/version-specific/supported-software/s/scp.md deleted file mode 100644 index 98c72adafd..0000000000 --- a/docs/version-specific/supported-software/s/scp.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# scp - -The scp.py module uses a paramiko transport to send and recieve files via the scp1 protocol. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.2`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.13.1`` | ``-Python-2.7.15`` | ``intel/2018b`` -``0.13.2`` | ``-Python-2.7.15`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/screen.md b/docs/version-specific/supported-software/s/screen.md new file mode 100644 index 0000000000..7fe21e2635 --- /dev/null +++ b/docs/version-specific/supported-software/s/screen.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# screen + +Screen is a full-screen window manager that multiplexes a physical terminal between several processes, typically interactive shells + +*homepage*: + +version | toolchain +--------|---------- +``5.0.0`` | ``system`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/sdsl-lite.md b/docs/version-specific/supported-software/s/sdsl-lite.md index 0cd4c347e1..01efbcff51 100644 --- a/docs/version-specific/supported-software/s/sdsl-lite.md +++ b/docs/version-specific/supported-software/s/sdsl-lite.md @@ -11,6 +11,8 @@ The Succinct Data Structure Library (SDSL) is a powerful and flexible C++11 libr version | toolchain --------|---------- ``2.0.3`` | ``GCCcore/12.2.0`` +``2.0.3`` | ``GCCcore/12.3.0`` +``2.1.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/segemehl.md b/docs/version-specific/supported-software/s/segemehl.md index 83d439f3f9..2447f7740d 100644 --- a/docs/version-specific/supported-software/s/segemehl.md +++ b/docs/version-specific/supported-software/s/segemehl.md @@ -4,20 +4,15 @@ search: --- # segemehl -segemehl is a software to map short sequencer reads to reference genomes. Unlike other methods, segemehl is able to detect not only mismatches but also insertions and deletions. Furthermore, segemehl is not limited to a specific read length and is able to mapprimer- or polyadenylation contaminated reads correctly. segemehl implements a matching strategy based on enhanced suffix arrays (ESA). Segemehl now supports the SAM format, reads gziped queries to save both disk and memory space and allows bisulfite sequencing mapping and split read mapping. +segemehl is a software to map short sequencer reads to reference genomes. Unlike other methods, segemehl is able to detect not only mismatches but also insertions and deletions. Furthermore, segemehl is not limited to a specific read length and is able to mapprimer- or polyadenylation contaminated reads correctly. segemehl implements a matching strategy based on enhanced suffix arrays (ESA). Segemehl now supports the SAM format, reads gziped queries to save both disk and memory space and allows bisulfite sequencing mapping and split read mapping. -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.2.0`` | ``foss/2016b`` -``0.2.0`` | ``intel/2017b`` -``0.2.0`` | ``intel/2018a`` ``0.3.4`` | ``GCC/10.2.0`` ``0.3.4`` | ``GCC/10.3.0`` ``0.3.4`` | ``GCC/11.2.0`` -``0.3.4`` | ``GCC/8.3.0`` -``0.3.4`` | ``foss/2018b`` ``0.3.4`` | ``iccifort/2020.4.304`` diff --git a/docs/version-specific/supported-software/s/segmentation-models.md b/docs/version-specific/supported-software/s/segmentation-models.md deleted file mode 100644 index 86f1b32236..0000000000 --- a/docs/version-specific/supported-software/s/segmentation-models.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# segmentation-models - -Python library with Neural Networks for Image Segmentation based on Keras and TensorFlow. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.0.1`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/sensormotion.md b/docs/version-specific/supported-software/s/sensormotion.md new file mode 100644 index 0000000000..ff096dc895 --- /dev/null +++ b/docs/version-specific/supported-software/s/sensormotion.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# sensormotion + +Python package for analyzing sensor-collected human motion data (e.g. physical activity levels, gait dynamics). + +*homepage*: + +version | toolchain +--------|---------- +``1.1.5`` | ``foss/2022a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/sentinelsat.md b/docs/version-specific/supported-software/s/sentinelsat.md index a42017b19f..b23b941ad0 100644 --- a/docs/version-specific/supported-software/s/sentinelsat.md +++ b/docs/version-specific/supported-software/s/sentinelsat.md @@ -4,7 +4,7 @@ search: --- # sentinelsat -Sentinelsat makes searching, downloading and retrieving the metadata of Sentinel satellite images from the Copernicus Open Access Hub easy. +Sentinelsat makes searching, downloading and retrieving the metadata of Sentinel satellite images from the Copernicus Open Access Hub easy. *homepage*: diff --git a/docs/version-specific/supported-software/s/sep.md b/docs/version-specific/supported-software/s/sep.md deleted file mode 100644 index 52cdea7aba..0000000000 --- a/docs/version-specific/supported-software/s/sep.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# sep - -Python and C library for Source Extraction and Photometry. (this easyconfig provides python library only) - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.3`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.0.3`` | ``-Python-2.7.15`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/seq2HLA.md b/docs/version-specific/supported-software/s/seq2HLA.md deleted file mode 100644 index a1c29c3c5f..0000000000 --- a/docs/version-specific/supported-software/s/seq2HLA.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# seq2HLA - -In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie index comprising all HLA alleles and outputs the most likely HLA class I and class II genotypes (in 4 digit resolution), a p-value for each call, and the expression of each class. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.3`` | ``-Python-2.7.15`` | ``foss/2018b`` -``2.3`` | ``-Python-2.7.14`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/seqtk.md b/docs/version-specific/supported-software/s/seqtk.md index b14474b131..1d666edada 100644 --- a/docs/version-specific/supported-software/s/seqtk.md +++ b/docs/version-specific/supported-software/s/seqtk.md @@ -4,25 +4,19 @@ search: --- # seqtk -Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. It seamlessly parses both FASTA and FASTQ files which can also be optionally compressed by gzip. +Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. It seamlessly parses both FASTA and FASTQ files which can also be optionally compressed by gzip. *homepage*: version | toolchain --------|---------- -``1.2`` | ``foss/2016b`` -``1.2`` | ``intel/2017a`` ``1.3`` | ``GCC/10.2.0`` ``1.3`` | ``GCC/10.3.0`` ``1.3`` | ``GCC/11.2.0`` ``1.3`` | ``GCC/11.3.0`` -``1.3`` | ``GCC/8.2.0-2.31.1`` -``1.3`` | ``GCC/8.3.0`` -``1.3`` | ``GCC/9.3.0`` -``1.3`` | ``foss/2018a`` -``1.3`` | ``foss/2018b`` ``1.4`` | ``GCC/12.2.0`` ``1.4`` | ``GCC/12.3.0`` +``1.4`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/setuptools.md b/docs/version-specific/supported-software/s/setuptools.md index d8a2fc7c1d..7ff7e2186c 100644 --- a/docs/version-specific/supported-software/s/setuptools.md +++ b/docs/version-specific/supported-software/s/setuptools.md @@ -4,15 +4,13 @@ search: --- # setuptools -Download, build, install, upgrade, and uninstall Python packages -- easily! +Easily download, build, install, upgrade, and uninstall Python packages -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.4.2`` | | ``system`` -``41.0.1`` | ``-py3`` | ``system`` -``64.0.3`` | | ``GCCcore/12.2.0`` +version | toolchain +--------|---------- +``64.0.3`` | ``GCCcore/12.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/sf.md b/docs/version-specific/supported-software/s/sf.md deleted file mode 100644 index 521fc2892a..0000000000 --- a/docs/version-specific/supported-software/s/sf.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# sf - -Support for simple features, a standardized way to encode spatial vector data. Binds to GDAL for reading and writing data, to GEOS for geometrical operations, and to PROJ for projection conversions and datum transformations. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.9-5`` | ``-R-4.0.0-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/sfftk.md b/docs/version-specific/supported-software/s/sfftk.md index 42e3bf531c..e924255907 100644 --- a/docs/version-specific/supported-software/s/sfftk.md +++ b/docs/version-specific/supported-software/s/sfftk.md @@ -4,7 +4,7 @@ search: --- # sfftk -sfftk is a set of utilities that facilitate creation, conversion and modification of Electron Microscopy Data Bank - Segmentation File Format (EMDB-SFF) files. EMDB-SFF is an open, community-driven file format to handle annotated segmentations and subtomogram averages that facilitates segmentation file interchange. It is written in Python and provides both a command-line suite of commands and a Python API. +sfftk is a set of utilities that facilitate creation, conversion and modification of Electron Microscopy Data Bank - Segmentation File Format (EMDB-SFF) files. EMDB-SFF is an open, community-driven file format to handle annotated segmentations and subtomogram averages that facilitates segmentation file interchange. It is written in Python and provides both a command-line suite of commands and a Python API. *homepage*: diff --git a/docs/version-specific/supported-software/s/shapAAR.md b/docs/version-specific/supported-software/s/shapAAR.md deleted file mode 100644 index 5e1b81d233..0000000000 --- a/docs/version-specific/supported-software/s/shapAAR.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# shapAAR - -An R package for the extraction, analysis and classification of (not only) archaeological objects from scanned images. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1.0-20180425`` | ``-R-3.6.0`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/sharutils.md b/docs/version-specific/supported-software/s/sharutils.md deleted file mode 100644 index 3e65cac1f9..0000000000 --- a/docs/version-specific/supported-software/s/sharutils.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# sharutils - -GNU shar makes so-called shell archives out of many files, preparing them for transmission by electronic mail services, while unshar helps unpacking shell archives after reception. - -*homepage*: - -version | toolchain ---------|---------- -``4.15`` | ``GCCcore/6.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/shift.md b/docs/version-specific/supported-software/s/shift.md deleted file mode 100644 index 38869330f7..0000000000 --- a/docs/version-specific/supported-software/s/shift.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# shift - -Shift is a framework for Self-Healing Independent File Transfer that provides high performance and resilience for local and remote transfers through a variety of techniques. - -*homepage*: - -version | toolchain ---------|---------- -``4.0`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/shovill.md b/docs/version-specific/supported-software/s/shovill.md index 9d2dd9800f..b621e31640 100644 --- a/docs/version-specific/supported-software/s/shovill.md +++ b/docs/version-specific/supported-software/s/shovill.md @@ -8,11 +8,9 @@ Faster SPAdes assembly of Illumina reads *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.9.0`` | ``-Python-2.7.14`` | ``foss/2018a`` -``1.0.4`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.1.0`` | | ``gompi/2021b`` +version | toolchain +--------|---------- +``1.1.0`` | ``gompi/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/shrinkwrap.md b/docs/version-specific/supported-software/s/shrinkwrap.md index 53c1dc2541..d6c4dbbee2 100644 --- a/docs/version-specific/supported-software/s/shrinkwrap.md +++ b/docs/version-specific/supported-software/s/shrinkwrap.md @@ -10,8 +10,8 @@ A std::streambuf wrapper for compression formats. version | toolchain --------|---------- -``1.0.0-beta`` | ``GCCcore/8.2.0`` ``1.1.0`` | ``GCCcore/10.2.0`` +``1.2.0`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/sickle.md b/docs/version-specific/supported-software/s/sickle.md deleted file mode 100644 index 2623337247..0000000000 --- a/docs/version-specific/supported-software/s/sickle.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# sickle - -Windowed Adaptive Trimming for fastq files using quality - -*homepage*: - -version | toolchain ---------|---------- -``1.33`` | ``foss/2017a`` -``1.33`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/silx.md b/docs/version-specific/supported-software/s/silx.md index d3791ea9e9..baaa9d3948 100644 --- a/docs/version-specific/supported-software/s/silx.md +++ b/docs/version-specific/supported-software/s/silx.md @@ -4,17 +4,15 @@ search: --- # silx -The silx project provides a collection of Python packages to support the development of data assessment, reduction and analysis applications at synchrotron radiation facilities. +The silx project provides a collection of Python packages to support the development of data assessment, reduction and analysis applications at synchrotron radiation facilities. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.13.2`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.13.2`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``0.14.0`` | | ``foss/2020b`` -``0.14.0`` | | ``fosscuda/2020b`` -``1.0.0`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``0.14.0`` | ``foss/2020b`` +``0.14.0`` | ``fosscuda/2020b`` +``1.0.0`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/simint.md b/docs/version-specific/supported-software/s/simint.md index 9294c7069e..4c44b9ccdd 100644 --- a/docs/version-specific/supported-software/s/simint.md +++ b/docs/version-specific/supported-software/s/simint.md @@ -4,7 +4,7 @@ search: --- # simint -Simint is a vectorized implementation of the Obara-Saika (OS) method of calculating electron repulsion integrals. Speedup is gained by vectorizing the primitive loop of the OS algorithm, with additional vectorization and optimizations left to the compiler. +Simint is a vectorized implementation of the Obara-Saika (OS) method of calculating electron repulsion integrals. Speedup is gained by vectorizing the primitive loop of the OS algorithm, with additional vectorization and optimizations left to the compiler. *homepage*: diff --git a/docs/version-specific/supported-software/s/simpy.md b/docs/version-specific/supported-software/s/simpy.md deleted file mode 100644 index 8f8a371ad6..0000000000 --- a/docs/version-specific/supported-software/s/simpy.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# simpy - -SimPy is a process-based discrete-event simulation framework based on standard Python. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0.11`` | ``-Python-3.6.6`` | ``intel/2018b`` -``3.0.11`` | | ``intel/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/blasr_libcpp.md b/docs/version-specific/supported-software/s/sisl.md similarity index 71% rename from docs/version-specific/supported-software/b/blasr_libcpp.md rename to docs/version-specific/supported-software/s/sisl.md index 135f6de193..8e41a58ce0 100644 --- a/docs/version-specific/supported-software/b/blasr_libcpp.md +++ b/docs/version-specific/supported-software/s/sisl.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# blasr_libcpp +# sisl -Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences +sisl is an open-source easy-to-use density functional theory API framework to post-analyse density functional theory codes output as well as providing tight-binding calculation capabilities. -*homepage*: +*homepage*: version | toolchain --------|---------- -``20170426`` | ``intel/2017a`` +``0.15.2`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/git-extras.md b/docs/version-specific/supported-software/s/skani.md similarity index 82% rename from docs/version-specific/supported-software/g/git-extras.md rename to docs/version-specific/supported-software/s/skani.md index 23079340ec..17e9a90dcc 100644 --- a/docs/version-specific/supported-software/g/git-extras.md +++ b/docs/version-specific/supported-software/s/skani.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# git-extras +# skani -Extra useful scripts for git +skani - accurate, fast nucleotide identity calculation for MAGs, genomes, and databases -*homepage*: +*homepage*: version | toolchain --------|---------- -``5.1.0`` | ``foss/2016a`` +``0.2.2`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/sketchmap.md b/docs/version-specific/supported-software/s/sketchmap.md deleted file mode 100644 index 26803b1083..0000000000 --- a/docs/version-specific/supported-software/s/sketchmap.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# sketchmap - -Sketch-map is a dimensionality reduction algorithm that is particularly well suited to examining the high-dimensionality data that is routinely produced in atomistic simulations. - -*homepage*: - -version | toolchain ---------|---------- -``20170130`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/skewer.md b/docs/version-specific/supported-software/s/skewer.md deleted file mode 100644 index c0ba2df5a4..0000000000 --- a/docs/version-specific/supported-software/s/skewer.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# skewer - -skewer implements the bit-masked k-difference matching algorithm dedicated to the task of adapter trimming and it is specially designed for processing next-generation sequencing (NGS) paired-end sequences. - -*homepage*: - -version | toolchain ---------|---------- -``0.2.2`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/sktime.md b/docs/version-specific/supported-software/s/sktime.md index 445744e398..853e13b183 100644 --- a/docs/version-specific/supported-software/s/sktime.md +++ b/docs/version-specific/supported-software/s/sktime.md @@ -4,7 +4,7 @@ search: --- # sktime -sktime is a library for time series analysis in Python. It provides a unified interface for multiple time series learning tasks. Currently, this includes time series classification, regression, clustering, annotation, and forecasting. It comes with time series algorithms and scikit-learn compatible tools to build, tune and validate time series models. +sktime is a library for time series analysis in Python. It provides a unified interface for multiple time series learning tasks. Currently, this includes time series classification, regression, clustering, annotation, and forecasting. It comes with time series algorithms and scikit-learn compatible tools to build, tune and validate time series models. *homepage*: diff --git a/docs/version-specific/supported-software/s/slepc4py.md b/docs/version-specific/supported-software/s/slepc4py.md index 59d7aac706..9e1cafedcd 100644 --- a/docs/version-specific/supported-software/s/slepc4py.md +++ b/docs/version-specific/supported-software/s/slepc4py.md @@ -8,12 +8,11 @@ Python bindings for SLEPc, the Scalable Library for Eigenvalue Problem Computati *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.12.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``3.15.1`` | | ``foss/2021a`` -``3.20.2`` | | ``foss/2023a`` -``3.9.0`` | ``-Python-3.6.4`` | ``foss/2018a`` +version | toolchain +--------|---------- +``3.15.1`` | ``foss/2021a`` +``3.17.2`` | ``foss/2022a`` +``3.20.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/sleuth.md b/docs/version-specific/supported-software/s/sleuth.md index 9a882e1174..969bb8100c 100644 --- a/docs/version-specific/supported-software/s/sleuth.md +++ b/docs/version-specific/supported-software/s/sleuth.md @@ -6,13 +6,11 @@ search: Investigate RNA-Seq transcript abundance from kallisto and perform differential expression analysis. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.29.0`` | ``-R-3.4.0`` | ``intel/2017a`` -``0.30.0`` | ``-R-3.5.1`` | ``foss/2018b`` -``0.30.1`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``0.30.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/slidingwindow.md b/docs/version-specific/supported-software/s/slidingwindow.md deleted file mode 100644 index 128c3ecde0..0000000000 --- a/docs/version-specific/supported-software/s/slidingwindow.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# slidingwindow - -slidingwindow is a simple little Python library for computing a set of windows into a larger dataset, designed for use with image-processing algorithms that utilise a sliding window to break the processing up into a series of smaller chunks. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.0.13`` | ``-Python-2.7.15`` | ``intel/2018b`` -``0.0.13`` | ``-Python-3.6.6`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/smafa.md b/docs/version-specific/supported-software/s/smafa.md index e977f3a57d..01af0f325f 100644 --- a/docs/version-specific/supported-software/s/smafa.md +++ b/docs/version-specific/supported-software/s/smafa.md @@ -4,13 +4,12 @@ search: --- # smafa -Smafa attempts to align or cluster pre-aligned biological sequences, handling sequences which are all the same length. +Biological sequence aligner for pre-aligned sequences. *homepage*: version | toolchain --------|---------- -``0.4.0`` | ``GCCcore/8.2.0`` ``0.8.0`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/s/smallgenomeutilities.md b/docs/version-specific/supported-software/s/smallgenomeutilities.md deleted file mode 100644 index 32f8e32c7f..0000000000 --- a/docs/version-specific/supported-software/s/smallgenomeutilities.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# smallgenomeutilities - -The smallgenomeutilities are a collection of scripts that is useful for dealing and manipulating NGS data of small viral genomes. They are written in Python 3 with a small number of dependencies. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.2.1`` | ``-Python-3.6.6`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/smithwaterman.md b/docs/version-specific/supported-software/s/smithwaterman.md index 7e29d4aba2..3db5007978 100644 --- a/docs/version-specific/supported-software/s/smithwaterman.md +++ b/docs/version-specific/supported-software/s/smithwaterman.md @@ -16,7 +16,6 @@ version | toolchain ``20160702`` | ``GCCcore/11.3.0`` ``20160702`` | ``GCCcore/12.2.0`` ``20160702`` | ``GCCcore/12.3.0`` -``20160702`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/snakemake.md b/docs/version-specific/supported-software/s/snakemake.md index 56cf98f6a2..3c18ff25a0 100644 --- a/docs/version-specific/supported-software/s/snakemake.md +++ b/docs/version-specific/supported-software/s/snakemake.md @@ -8,20 +8,16 @@ The Snakemake workflow management system is a tool to create reproducible and sc *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``5.2.2`` | ``-Python-3.6.4`` | ``intel/2018a`` -``5.2.4`` | ``-Python-3.6.6`` | ``foss/2018b`` -``5.2.4`` | ``-Python-3.6.6`` | ``intel/2018b`` -``5.26.1`` | ``-Python-3.8.2`` | ``intel/2020a`` -``5.7.1`` | ``-Python-3.7.2`` | ``foss/2019a`` -``6.1.0`` | | ``foss/2020b`` -``6.10.0`` | | ``foss/2021b`` -``6.6.1`` | | ``foss/2021a`` -``7.18.2`` | | ``foss/2021b`` -``7.22.0`` | | ``foss/2022a`` -``7.32.3`` | | ``foss/2022b`` -``8.4.2`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``6.1.0`` | ``foss/2020b`` +``6.10.0`` | ``foss/2021b`` +``6.6.1`` | ``foss/2021a`` +``7.18.2`` | ``foss/2021b`` +``7.22.0`` | ``foss/2022a`` +``7.32.3`` | ``foss/2022b`` +``8.27.0`` | ``foss/2024a`` +``8.4.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/snaphu.md b/docs/version-specific/supported-software/s/snaphu.md deleted file mode 100644 index 9dcf3a7d75..0000000000 --- a/docs/version-specific/supported-software/s/snaphu.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# snaphu - -SNAPHU is an implementation of the Statistical-cost, Network-flow Algorithm for Phase Unwrapping proposed by Chen and Zebker - -*homepage*: - -version | toolchain ---------|---------- -``1.4.2`` | ``GCCcore/6.3.0`` -``1.4.2`` | ``intel/2016b`` -``1.4.2`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/snappy.md b/docs/version-specific/supported-software/s/snappy.md index f0dbb07953..24b9cea444 100644 --- a/docs/version-specific/supported-software/s/snappy.md +++ b/docs/version-specific/supported-software/s/snappy.md @@ -12,22 +12,13 @@ version | toolchain --------|---------- ``1.1.10`` | ``GCCcore/12.3.0`` ``1.1.10`` | ``GCCcore/13.2.0`` -``1.1.2`` | ``GCC/4.9.2`` -``1.1.3`` | ``GCC/4.9.3-2.25`` -``1.1.3`` | ``GCC/4.9.3`` -``1.1.6`` | ``system`` -``1.1.7`` | ``GCCcore/6.4.0`` -``1.1.7`` | ``GCCcore/7.3.0`` -``1.1.7`` | ``GCCcore/8.2.0`` -``1.1.7`` | ``GCCcore/8.3.0`` -``1.1.7`` | ``intel/2017a`` -``1.1.7`` | ``intel/2017b`` +``1.1.10`` | ``GCCcore/13.3.0`` ``1.1.8`` | ``GCCcore/10.2.0`` ``1.1.8`` | ``GCCcore/10.3.0`` -``1.1.8`` | ``GCCcore/9.3.0`` ``1.1.9`` | ``GCCcore/11.2.0`` ``1.1.9`` | ``GCCcore/11.3.0`` ``1.1.9`` | ``GCCcore/12.2.0`` +``1.2.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/snippy.md b/docs/version-specific/supported-software/s/snippy.md index 23ebd8d0b4..79476ed1d9 100644 --- a/docs/version-specific/supported-software/s/snippy.md +++ b/docs/version-specific/supported-software/s/snippy.md @@ -4,15 +4,13 @@ search: --- # snippy -Snippy finds SNPs between a haploid reference genome and your NGS sequence reads. It will find both substitutions (snps) and insertions/deletions (indels). Rapid haploid variant calling and core genome alignment. +Rapid haploid variant calling and core genome alignment *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``4.4.1`` | ``-Perl-5.28.0`` | ``foss/2018b`` ``4.6.0`` | | ``GCC/10.2.0`` -``4.6.0`` | ``-Java-13-Python-3.8.2`` | ``GCC/9.3.0`` ``4.6.0`` | ``-R-4.1.2`` | ``foss/2021b`` diff --git a/docs/version-specific/supported-software/s/snp-sites.md b/docs/version-specific/supported-software/s/snp-sites.md index 85881e6465..96f69e116c 100644 --- a/docs/version-specific/supported-software/s/snp-sites.md +++ b/docs/version-specific/supported-software/s/snp-sites.md @@ -13,7 +13,6 @@ version | toolchain ``2.5.1`` | ``GCCcore/10.2.0`` ``2.5.1`` | ``GCCcore/10.3.0`` ``2.5.1`` | ``GCCcore/11.2.0`` -``2.5.1`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/snpEff.md b/docs/version-specific/supported-software/s/snpEff.md index 2ad4ca1ca9..885de08899 100644 --- a/docs/version-specific/supported-software/s/snpEff.md +++ b/docs/version-specific/supported-software/s/snpEff.md @@ -4,20 +4,18 @@ search: --- # snpEff -SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of genetic variants (such as amino acid changes). +SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of genetic variants (such as amino acid changes). *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``3.6`` | ``-Java-1.7.0_80`` | ``system`` -``4.1d`` | ``-Java-1.7.0_80`` | ``system`` ``4.3t`` | ``-Java-1.8`` | ``system`` -``5.0`` | ``-Java-13-Python-3.8.2`` | ``GCCcore/9.3.0`` ``5.0`` | ``-Java-13`` | ``system`` ``5.0e`` | ``-Java-13`` | ``GCCcore/10.2.0`` ``5.0e`` | ``-Java-11`` | ``GCCcore/11.2.0`` ``5.2c`` | ``-Java-11`` | ``GCCcore/12.2.0`` +``5.2c`` | ``-Java-11`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/socat.md b/docs/version-specific/supported-software/s/socat.md deleted file mode 100644 index f40858833d..0000000000 --- a/docs/version-specific/supported-software/s/socat.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# socat - -socat is a relay for bidirectional data transfer between two independent data channels. - -*homepage*: - -version | toolchain ---------|---------- -``1.7.3.3`` | ``GCCcore/8.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/sonic.md b/docs/version-specific/supported-software/s/sonic.md index 866118fd29..8a4648b362 100644 --- a/docs/version-specific/supported-software/s/sonic.md +++ b/docs/version-specific/supported-software/s/sonic.md @@ -11,7 +11,6 @@ Sonic is a simple algorithm for speeding up or slowing down speech. However, it version | toolchain --------|---------- ``20180202`` | ``gfbf/2023a`` -``20180202`` | ``gompi/2020a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/spaCy.md b/docs/version-specific/supported-software/s/spaCy.md index 352fdc4004..c7ec4cbaed 100644 --- a/docs/version-specific/supported-software/s/spaCy.md +++ b/docs/version-specific/supported-software/s/spaCy.md @@ -11,7 +11,9 @@ Industrial-strength Natural Language Processing (NLP) in Python. version | toolchain --------|---------- ``3.4.4`` | ``foss/2022a`` +``3.7.4`` | ``foss/2022b`` ``3.7.4`` | ``foss/2023a`` +``3.7.5`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/spaln.md b/docs/version-specific/supported-software/s/spaln.md index ff55773772..b42a676eb1 100644 --- a/docs/version-specific/supported-software/s/spaln.md +++ b/docs/version-specific/supported-software/s/spaln.md @@ -10,11 +10,10 @@ Spaln (space-efficient spliced alignment) is a stand-alone program that maps an version | toolchain --------|---------- -``2.3.3c`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``2.4.03`` | ``iccifort/2019.5.281`` ``2.4.12`` | ``GCC/10.2.0`` ``2.4.12`` | ``GCC/11.2.0`` ``2.4.13f`` | ``GCC/11.3.0`` +``3.0.6b`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/sparsehash.md b/docs/version-specific/supported-software/s/sparsehash.md index 2069354742..d3a2070774 100644 --- a/docs/version-specific/supported-software/s/sparsehash.md +++ b/docs/version-specific/supported-software/s/sparsehash.md @@ -4,24 +4,16 @@ search: --- # sparsehash -An extremely memory-efficient hash_map implementation. 2 bits/entry overhead! The SparseHash library contains several hash-map implementations, including implementations that optimize for space or speed. +An extremely memory-efficient hash_map implementation. 2 bits/entry overhead! The SparseHash library contains several hash-map implementations, including implementations that optimize for space or speed. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.0.2`` | ``foss/2016a`` -``2.0.3`` | ``GCCcore/5.4.0`` -``2.0.3`` | ``GCCcore/6.4.0`` -``2.0.3`` | ``GCCcore/7.3.0`` -``2.0.3`` | ``GCCcore/8.2.0`` -``2.0.3`` | ``GCCcore/8.3.0`` -``2.0.3`` | ``foss/2016b`` -``2.0.3`` | ``intel/2017a`` ``2.0.4`` | ``GCCcore/10.2.0`` ``2.0.4`` | ``GCCcore/11.3.0`` ``2.0.4`` | ``GCCcore/12.3.0`` -``2.0.4`` | ``GCCcore/9.3.0`` +``2.0.4`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/spatialreg.md b/docs/version-specific/supported-software/s/spatialreg.md index 47aa0e0e10..d4e6633b73 100644 --- a/docs/version-specific/supported-software/s/spatialreg.md +++ b/docs/version-specific/supported-software/s/spatialreg.md @@ -10,7 +10,6 @@ A collection of all the estimation functions for spatial cross-sectional models version | versionsuffix | toolchain --------|---------------|---------- -``1.1-5`` | ``-R-3.6.2`` | ``foss/2019b`` ``1.1-8`` | ``-R-4.1.0`` | ``foss/2021a`` diff --git a/docs/version-specific/supported-software/s/spdlog.md b/docs/version-specific/supported-software/s/spdlog.md index f923496eb6..ff79db56b4 100644 --- a/docs/version-specific/supported-software/s/spdlog.md +++ b/docs/version-specific/supported-software/s/spdlog.md @@ -14,6 +14,7 @@ version | toolchain ``1.11.0`` | ``GCCcore/12.2.0`` ``1.11.0`` | ``GCCcore/12.3.0`` ``1.12.0`` | ``GCCcore/13.2.0`` +``1.12.0`` | ``GCCcore/13.3.0`` ``1.9.2`` | ``GCCcore/10.3.0`` diff --git a/docs/version-specific/supported-software/s/spectral.methods.md b/docs/version-specific/supported-software/s/spectral.methods.md deleted file mode 100644 index 20e57c10c4..0000000000 --- a/docs/version-specific/supported-software/s/spectral.methods.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# spectral.methods - -Contains some implementations of Singular Spectrum Analysis (SSA) for the gapfilling and spectral decomposition of time series. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.7.2.133`` | ``-R-3.4.3`` | ``intel/2017b`` -``0.7.2.133`` | ``-R-3.4.4`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/speech_tools.md b/docs/version-specific/supported-software/s/speech_tools.md index fdfbee72b5..46cb804a95 100644 --- a/docs/version-specific/supported-software/s/speech_tools.md +++ b/docs/version-specific/supported-software/s/speech_tools.md @@ -11,7 +11,6 @@ The Edinburgh Speech Tools Library is a collection of C++ class, functions and r version | toolchain --------|---------- ``2.5.0`` | ``GCCcore/12.3.0`` -``2.5.0`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/spektral.md b/docs/version-specific/supported-software/s/spektral.md index 8eb906c2a4..f2590c686d 100644 --- a/docs/version-specific/supported-software/s/spektral.md +++ b/docs/version-specific/supported-software/s/spektral.md @@ -12,6 +12,8 @@ version | versionsuffix | toolchain --------|---------------|---------- ``1.1.0`` | ``-CUDA-11.4.1`` | ``foss/2021b`` ``1.2.0`` | ``-TensorFlow-2.5.0`` | ``fosscuda/2020b`` +``1.3.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``1.3.1`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/spglib-python.md b/docs/version-specific/supported-software/s/spglib-python.md index 747a45f57c..8f0ca5500f 100644 --- a/docs/version-specific/supported-software/s/spglib-python.md +++ b/docs/version-specific/supported-software/s/spglib-python.md @@ -8,33 +8,23 @@ Spglib for Python. Spglib is a library for finding and handling crystal symmetri *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.10.0.2`` | ``-Python-2.7.14`` | ``intel/2017b`` -``1.10.0.2`` | ``-Python-3.6.3`` | ``intel/2017b`` -``1.14.1.post0`` | ``-Python-3.7.2`` | ``intel/2019a`` -``1.16.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``1.16.0`` | | ``foss/2020b`` -``1.16.0`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``1.16.0`` | | ``fosscuda/2020b`` -``1.16.0`` | ``-Python-3.7.4`` | ``intel/2019b`` -``1.16.0`` | ``-Python-3.8.2`` | ``intel/2020a`` -``1.16.0`` | | ``intel/2020b`` -``1.16.0`` | ``-Python-3.7.4`` | ``intelcuda/2019b`` -``1.16.1`` | | ``foss/2021a`` -``1.16.1`` | | ``gomkl/2021a`` -``1.16.1`` | | ``intel/2021a`` -``1.16.3`` | | ``foss/2021b`` -``1.16.3`` | | ``intel/2021b`` -``1.9.4.2`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.9.5`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.9.9.38`` | ``-Python-2.7.13`` | ``intel/2017a`` -``2.0.0`` | | ``foss/2022a`` -``2.0.0`` | | ``intel/2022a`` -``2.0.2`` | | ``gfbf/2022b`` -``2.1.0`` | | ``gfbf/2023a`` -``2.1.0`` | | ``iimkl/2023a`` -``2.5.0`` | | ``gfbf/2023b`` +version | toolchain +--------|---------- +``1.16.0`` | ``foss/2020b`` +``1.16.0`` | ``fosscuda/2020b`` +``1.16.0`` | ``intel/2020b`` +``1.16.1`` | ``foss/2021a`` +``1.16.1`` | ``gomkl/2021a`` +``1.16.1`` | ``intel/2021a`` +``1.16.3`` | ``foss/2021b`` +``1.16.3`` | ``intel/2021b`` +``2.0.0`` | ``foss/2022a`` +``2.0.0`` | ``intel/2022a`` +``2.0.2`` | ``gfbf/2022b`` +``2.1.0`` | ``gfbf/2023a`` +``2.1.0`` | ``iimkl/2023a`` +``2.5.0`` | ``gfbf/2023b`` +``2.5.0`` | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/spglib.md b/docs/version-specific/supported-software/s/spglib.md index 1a94f571c1..f0b56ef62c 100644 --- a/docs/version-specific/supported-software/s/spglib.md +++ b/docs/version-specific/supported-software/s/spglib.md @@ -12,8 +12,6 @@ version | toolchain --------|---------- ``1.16.1`` | ``GCCcore/10.2.0`` ``1.16.2`` | ``GCCcore/10.3.0`` -``1.9.2`` | ``intel/2016.02-GCC-4.9`` -``1.9.9`` | ``intel/2017b`` ``2.0.2`` | ``GCCcore/11.3.0`` ``2.0.2`` | ``GCCcore/12.2.0`` ``2.5.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/s/spla.md b/docs/version-specific/supported-software/s/spla.md index fa1b731729..1381493906 100644 --- a/docs/version-specific/supported-software/s/spla.md +++ b/docs/version-specific/supported-software/s/spla.md @@ -4,7 +4,7 @@ search: --- # spla -SPLA provides specialized functions for linear algebra computations with a C++ and C interface, which are inspired by requirements in computational material science codes. +SPLA provides specialized functions for linear algebra computations with a C++ and C interface, which are inspired by requirements in computational material science codes. *homepage*: diff --git a/docs/version-specific/supported-software/s/split-seq.md b/docs/version-specific/supported-software/s/split-seq.md deleted file mode 100644 index 4643c83e4e..0000000000 --- a/docs/version-specific/supported-software/s/split-seq.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# split-seq - -Analysis tools for split-seq. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20190717`` | ``-Python-3.6.6`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/splitRef.md b/docs/version-specific/supported-software/s/splitRef.md deleted file mode 100644 index e35e30c5cc..0000000000 --- a/docs/version-specific/supported-software/s/splitRef.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# splitRef - -splitRef splits a reference haplotype file into smaller files with subsets of markers. The current version is a pre-release. - -*homepage*: - -version | toolchain ---------|---------- -``0.0.2`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/spoa.md b/docs/version-specific/supported-software/s/spoa.md index 3fb02eccd5..eeb9d4ad01 100644 --- a/docs/version-specific/supported-software/s/spoa.md +++ b/docs/version-specific/supported-software/s/spoa.md @@ -10,9 +10,7 @@ Spoa (SIMD POA) is a c++ implementation of the partial order alignment (POA) alg version | toolchain --------|---------- -``3.0.1`` | ``GCC/7.3.0-2.30`` ``3.4.0`` | ``GCC/10.2.0`` -``4.0.0`` | ``GCC/8.3.0`` ``4.0.7`` | ``GCC/10.2.0`` ``4.0.7`` | ``GCC/10.3.0`` ``4.0.7`` | ``GCC/11.2.0`` diff --git a/docs/version-specific/supported-software/s/squashfs-tools.md b/docs/version-specific/supported-software/s/squashfs-tools.md new file mode 100644 index 0000000000..822b55adad --- /dev/null +++ b/docs/version-specific/supported-software/s/squashfs-tools.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# squashfs-tools + +tools to create and extract Squashfs filesystems + +*homepage*: < https://github.com/plougher/squashfs-tools> + +version | toolchain +--------|---------- +``4.6.1`` | ``GCCcore/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/sradownloader.md b/docs/version-specific/supported-software/s/sradownloader.md index 1005f7a3de..9489f05955 100644 --- a/docs/version-specific/supported-software/s/sradownloader.md +++ b/docs/version-specific/supported-software/s/sradownloader.md @@ -4,7 +4,7 @@ search: --- # sradownloader -SRAdownloader takes the annotation table from the SRA run selector tool and retrieves the raw fastq files for the selected samples +SRAdownloader takes the annotation table from the SRA run selector tool and retrieves the raw fastq files for the selected samples *homepage*: diff --git a/docs/version-specific/supported-software/s/starcode.md b/docs/version-specific/supported-software/s/starcode.md new file mode 100644 index 0000000000..cd96c0b03c --- /dev/null +++ b/docs/version-specific/supported-software/s/starcode.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# starcode + +Starcode is a DNA sequence clustering software. Starcode clustering is based on all pairs search within a specified Levenshtein distance (allowing insertions and deletions), followed by a clustering algorithm: Message Passing, Spheres or Connected Components. + +*homepage*: + +version | toolchain +--------|---------- +``1.4`` | ``GCC/13.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/stardist.md b/docs/version-specific/supported-software/s/stardist.md index 079b72eb9f..dfb3f8307b 100644 --- a/docs/version-specific/supported-software/s/stardist.md +++ b/docs/version-specific/supported-software/s/stardist.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``0.8.3`` | ``-CUDA-11.4.1`` | ``foss/2021b`` ``0.8.3`` | | ``foss/2021b`` +``0.8.5`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/starparser.md b/docs/version-specific/supported-software/s/starparser.md index ca35e97388..c0159ffe04 100644 --- a/docs/version-specific/supported-software/s/starparser.md +++ b/docs/version-specific/supported-software/s/starparser.md @@ -4,7 +4,7 @@ search: --- # starparser -Use this package to manipulate Relion star files, including counting, modifying, plotting, and sifting the data. At the very least, this is a useful alternative to awk commands, which can get awkward. Below is a description of the command- line options with some examples. Alternatively, use starparser within Relion or load the modules in your own Python scripts. +Use this package to manipulate Relion star files, including counting, modifying, plotting, and sifting the data. At the very least, this is a useful alternative to awk commands, which can get awkward. Below is a description of the command- line options with some examples. Alternatively, use starparser within Relion or load the modules in your own Python scripts. *homepage*: diff --git a/docs/version-specific/supported-software/s/stars.md b/docs/version-specific/supported-software/s/stars.md deleted file mode 100644 index 6edd953910..0000000000 --- a/docs/version-specific/supported-software/s/stars.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# stars - -Reading, manipulating, writing and plotting spatiotemporal arrays (raster and vector data cubes) in R, using GDAL bindings provided by sf, and NetCDF bindings by ncmeta and RNetCDF. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.4-3`` | ``-R-4.0.0-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/statsmodels.md b/docs/version-specific/supported-software/s/statsmodels.md index b392bab254..1431653942 100644 --- a/docs/version-specific/supported-software/s/statsmodels.md +++ b/docs/version-specific/supported-software/s/statsmodels.md @@ -6,34 +6,21 @@ search: Statsmodels is a Python module that allows users to explore data, estimate statistical models, and perform statistical tests. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.1`` | | ``foss/2019a`` -``0.11.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.11.0`` | ``-Python-3.7.4`` | ``intel/2019b`` -``0.11.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``0.11.1`` | ``-Python-3.8.2`` | ``intel/2020a`` -``0.12.1`` | | ``foss/2020b`` -``0.12.1`` | | ``fosscuda/2020b`` -``0.12.1`` | | ``intel/2020b`` -``0.12.2`` | | ``foss/2021a`` -``0.13.1`` | | ``foss/2021b`` -``0.13.1`` | | ``foss/2022a`` -``0.13.1`` | | ``intel/2021b`` -``0.14.0`` | | ``gfbf/2022b`` -``0.14.1`` | | ``gfbf/2023a`` -``0.14.1`` | | ``gfbf/2023b`` -``0.6.1`` | ``-Python-2.7.13`` | ``foss/2017a`` -``0.6.1`` | ``-Python-3.5.1`` | ``intel/2016a`` -``0.6.1`` | ``-Python-3.5.2`` | ``intel/2016b`` -``0.8.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``0.9.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``0.9.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.9.0`` | ``-Python-2.7.15`` | ``intel/2018b`` -``0.9.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``0.9.0`` | ``-Python-2.7.16`` | ``intel/2019b`` +version | toolchain +--------|---------- +``0.12.1`` | ``foss/2020b`` +``0.12.1`` | ``fosscuda/2020b`` +``0.12.1`` | ``intel/2020b`` +``0.12.2`` | ``foss/2021a`` +``0.13.1`` | ``foss/2021b`` +``0.13.1`` | ``foss/2022a`` +``0.13.1`` | ``intel/2021b`` +``0.14.0`` | ``gfbf/2022b`` +``0.14.1`` | ``gfbf/2023a`` +``0.14.1`` | ``gfbf/2023b`` +``0.14.4`` | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/stpipeline.md b/docs/version-specific/supported-software/s/stpipeline.md deleted file mode 100644 index 2cfa62d507..0000000000 --- a/docs/version-specific/supported-software/s/stpipeline.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# stpipeline - -The ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format to generated datasets for down-stream analysis. The ST pipeline can also be used to process single cell data as long as a file with barcodes identifying each cell is provided. The ST Pipeline can also process RNA-Seq datasets generated with or without UMIs. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.7.3`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.7.6`` | ``-Python-3.7.2`` | ``foss/2019a`` -``1.7.6`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/strelka.md b/docs/version-specific/supported-software/s/strelka.md deleted file mode 100644 index d5b1dd8f42..0000000000 --- a/docs/version-specific/supported-software/s/strelka.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# strelka - -Strelka2 is a fast and accurate small variant caller optimized for analysis of germline variation in small cohorts and somatic variation in tumor/normal sample pairs. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.9.10`` | ``-Python-2.7.15`` | ``foss/2018b`` -``2.9.10`` | ``-Python-2.7.15`` | ``intel/2018b`` -``2.9.7`` | | ``intel/2018a`` -``2.9.9`` | | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/stripy.md b/docs/version-specific/supported-software/s/stripy.md index 6cb4db8088..bcef1c2c2a 100644 --- a/docs/version-specific/supported-software/s/stripy.md +++ b/docs/version-specific/supported-software/s/stripy.md @@ -4,7 +4,7 @@ search: --- # stripy -A Python interface to TRIPACK and STRIPACK Fortran code for (constrained) triangulation in Cartesian coordinates and on a sphere. Stripy is an object-oriented package and includes routines from SRFPACK and SSRFPACK for interpolation (nearest neighbor, linear and hermite cubic) and to evaluate derivatives (Renka 1996a,b and 1997a,b). +A Python interface to TRIPACK and STRIPACK Fortran code for (constrained) triangulation in Cartesian coordinates and on a sphere. Stripy is an object-oriented package and includes routines from SRFPACK and SSRFPACK for interpolation (nearest neighbor, linear and hermite cubic) and to evaluate derivatives (Renka 1996a,b and 1997a,b). *homepage*: diff --git a/docs/version-specific/supported-software/s/subset-bam.md b/docs/version-specific/supported-software/s/subset-bam.md index cdc8d3611b..deb272b30e 100644 --- a/docs/version-specific/supported-software/s/subset-bam.md +++ b/docs/version-specific/supported-software/s/subset-bam.md @@ -4,13 +4,14 @@ search: --- # subset-bam -subset-bam is a tool to subset a 10x Genomics BAM file based on a tag, most commonly the cell barcode tag. +subset-bam is a tool to subset a 10x Genomics BAM file based on a tag, most commonly the cell barcode tag. *homepage*: version | toolchain --------|---------- ``1.1.0`` | ``GCCcore/10.3.0`` +``1.1.0`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/supermagic.md b/docs/version-specific/supported-software/s/supermagic.md deleted file mode 100644 index 8035039f21..0000000000 --- a/docs/version-specific/supported-software/s/supermagic.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# supermagic - -Very simple MPI sanity code. Nothing more, nothing less. - -*homepage*: - -version | toolchain ---------|---------- -``20170824`` | ``foss/2017a`` -``20170824`` | ``gompi/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/supernova.md b/docs/version-specific/supported-software/s/supernova.md deleted file mode 100644 index ffed4ba59a..0000000000 --- a/docs/version-specific/supported-software/s/supernova.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# supernova - -Supernova is a software package for de novo assembly from Chromium Linked-Reads that are made from a single whole-genome library from an individual DNA source - -*homepage*: - -version | toolchain ---------|---------- -``2.0.1`` | ``system`` -``2.1.1`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/svist4get.md b/docs/version-specific/supported-software/s/svist4get.md index d80f225d83..0e534ee1b8 100644 --- a/docs/version-specific/supported-software/s/svist4get.md +++ b/docs/version-specific/supported-software/s/svist4get.md @@ -4,7 +4,7 @@ search: --- # svist4get -Svist4get is a simple bioinformatics tool for visualization of genomic signal tracks in user-defined genomic windows, either arbitrary selected by genomic coordinates or anchored to particular transcripts or genes. +Svist4get is a simple bioinformatics tool for visualization of genomic signal tracks in user-defined genomic windows, either arbitrary selected by genomic coordinates or anchored to particular transcripts or genes. *homepage*: diff --git a/docs/version-specific/supported-software/s/swarm.md b/docs/version-specific/supported-software/s/swarm.md deleted file mode 100644 index 16a189806e..0000000000 --- a/docs/version-specific/supported-software/s/swarm.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# swarm - -A robust and fast clustering method for amplicon-based studies - -*homepage*: - -version | toolchain ---------|---------- -``2.2.2`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/swissknife.md b/docs/version-specific/supported-software/s/swissknife.md deleted file mode 100644 index c61748c76d..0000000000 --- a/docs/version-specific/supported-software/s/swissknife.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# swissknife - -Perl module for reading and writing UniProtKB data in plain text format. - -*homepage*: - -version | toolchain ---------|---------- -``1.80`` | ``GCCcore/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/sympy.md b/docs/version-specific/supported-software/s/sympy.md index fb76b08f4b..93c7008130 100644 --- a/docs/version-specific/supported-software/s/sympy.md +++ b/docs/version-specific/supported-software/s/sympy.md @@ -8,30 +8,21 @@ SymPy is a Python library for symbolic mathematics. It aims to become a full-fe *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``1.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``1.10.1`` | | ``foss/2022a`` -``1.10.1`` | | ``intel/2022a`` -``1.11.1`` | | ``foss/2022a`` -``1.11.1`` | | ``intel/2022a`` -``1.12`` | | ``gfbf/2022b`` -``1.12`` | | ``gfbf/2023a`` -``1.12`` | | ``gfbf/2023b`` -``1.3`` | ``-Python-2.7.15`` | ``foss/2018b`` -``1.3`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.3`` | ``-Python-2.7.14`` | ``intel/2018a`` -``1.3`` | ``-Python-3.6.4`` | ``intel/2018a`` -``1.4`` | | ``foss/2019a`` -``1.4`` | | ``intel/2019a`` -``1.5.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.6.2`` | ``-Python-3.8.2`` | ``foss/2020a`` -``1.7.1`` | | ``foss/2020b`` -``1.7.1`` | | ``intel/2020b`` -``1.8`` | | ``foss/2021a`` -``1.9`` | | ``foss/2021b`` -``1.9`` | | ``intel/2021b`` +version | toolchain +--------|---------- +``1.10.1`` | ``foss/2022a`` +``1.10.1`` | ``intel/2022a`` +``1.11.1`` | ``foss/2022a`` +``1.11.1`` | ``intel/2022a`` +``1.12`` | ``gfbf/2022b`` +``1.12`` | ``gfbf/2023a`` +``1.12`` | ``gfbf/2023b`` +``1.13.3`` | ``gfbf/2024a`` +``1.7.1`` | ``foss/2020b`` +``1.7.1`` | ``intel/2020b`` +``1.8`` | ``foss/2021a`` +``1.9`` | ``foss/2021b`` +``1.9`` | ``intel/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/synthcity.md b/docs/version-specific/supported-software/s/synthcity.md index e09cd10889..bb36ac8002 100644 --- a/docs/version-specific/supported-software/s/synthcity.md +++ b/docs/version-specific/supported-software/s/synthcity.md @@ -10,6 +10,8 @@ A library for generating and evaluating synthetic tabular data. version | toolchain --------|---------- +``0.2.10`` | ``foss/2022b`` +``0.2.11`` | ``foss/2023b`` ``0.2.4`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/t/TALYS.md b/docs/version-specific/supported-software/t/TALYS.md index ef70bbdfe1..3208e3e7fb 100644 --- a/docs/version-specific/supported-software/t/TALYS.md +++ b/docs/version-specific/supported-software/t/TALYS.md @@ -11,7 +11,6 @@ TALYS is a nuclear reaction program. version | toolchain --------|---------- ``1.95`` | ``GCCcore/10.3.0`` -``1.95`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/TAMkin.md b/docs/version-specific/supported-software/t/TAMkin.md index 8f0175ef8a..e16a92af5c 100644 --- a/docs/version-specific/supported-software/t/TAMkin.md +++ b/docs/version-specific/supported-software/t/TAMkin.md @@ -6,21 +6,16 @@ search: TAMkin is a post-processing toolkit for normal mode analysis, thermochemistry and reaction kinetics. It uses a Hessian computation from a standard computational chemistry program as its input. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.9`` | ``-Python-2.7.11`` | ``intel/2016a`` -``1.2.4`` | ``-Python-2.7.14`` | ``intel/2017b`` -``1.2.6`` | ``-Python-3.8.2`` | ``foss/2020a`` -``1.2.6`` | | ``foss/2020b`` -``1.2.6`` | | ``foss/2021a`` -``1.2.6`` | | ``foss/2021b`` -``1.2.6`` | | ``foss/2022a`` -``1.2.6`` | | ``foss/2022b`` -``1.2.6`` | | ``foss/2023a`` -``1.2.6`` | ``-Python-3.7.2`` | ``intel/2019a`` -``1.2.6`` | ``-Python-3.8.2`` | ``intel/2020a`` +version | toolchain +--------|---------- +``1.2.6`` | ``foss/2020b`` +``1.2.6`` | ``foss/2021a`` +``1.2.6`` | ``foss/2021b`` +``1.2.6`` | ``foss/2022a`` +``1.2.6`` | ``foss/2022b`` +``1.2.6`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/TBA.md b/docs/version-specific/supported-software/t/TBA.md index f18e75a41e..c10519c3de 100644 --- a/docs/version-specific/supported-software/t/TBA.md +++ b/docs/version-specific/supported-software/t/TBA.md @@ -4,7 +4,7 @@ search: --- # TBA -TBA (a Transcription factor Binding Analysis): TBA is a multi-functional machine learning tool for identifying transcription factors associated with genomic features +TBA (a Transcription factor Binding Analysis): TBA is a multi-functional machine learning tool for identifying transcription factors associated with genomic features *homepage*: diff --git a/docs/version-specific/supported-software/t/TCC.md b/docs/version-specific/supported-software/t/TCC.md deleted file mode 100644 index 0a8cd7e2e5..0000000000 --- a/docs/version-specific/supported-software/t/TCC.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# TCC - -The Tiny C Compiler (aka TCC, tCc, or TinyCC) is an x86 and x86-64 C compiler created by Fabrice Bellard. It is designed to work for slow computers with little disk space and can run shebang style !/usr/bin/tcc . TCC is distributed under the LGPL. TCC claims to implement all of ANSI C (C89/C90),[1] much of the new ISO C99 standard, and many GNU C extensions including inline assembly. - -*homepage*: - -version | toolchain ---------|---------- -``0.9.26`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/TCLAP.md b/docs/version-specific/supported-software/t/TCLAP.md index 74fa8e954d..22bee15fa5 100644 --- a/docs/version-specific/supported-software/t/TCLAP.md +++ b/docs/version-specific/supported-software/t/TCLAP.md @@ -4,15 +4,13 @@ search: --- # TCLAP -TCLAP is a small, flexible library that provides a simple interface for defining and accessing command line arguments. It was intially inspired by the user friendly CLAP libary. +TCLAP is a small, flexible library that provides a simple interface for defining and accessing command line arguments. It was initially inspired by the user friendly CLAP library. *homepage*: version | toolchain --------|---------- -``1.2.2`` | ``GCCcore/8.3.0`` ``1.2.4`` | ``GCCcore/10.2.0`` -``1.2.4`` | ``GCCcore/9.3.0`` ``1.2.5`` | ``GCCcore/10.3.0`` ``1.2.5`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/t/TEToolkit.md b/docs/version-specific/supported-software/t/TEToolkit.md deleted file mode 100644 index c26a4b41d2..0000000000 --- a/docs/version-specific/supported-software/t/TEToolkit.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# TEToolkit - -Tools for estimating differential enrichment of Transposable Elements and other highly repetitive regions - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.5.1`` | ``-Python-2.7.11`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/TEtranscripts.md b/docs/version-specific/supported-software/t/TEtranscripts.md index 45606301e2..3bc6ab2f17 100644 --- a/docs/version-specific/supported-software/t/TEtranscripts.md +++ b/docs/version-specific/supported-software/t/TEtranscripts.md @@ -10,7 +10,7 @@ TEtranscripts and TEcount takes RNA-seq (and similar data) and annotates reads t version | toolchain --------|---------- -``2.2.0`` | ``foss/2020a`` +``2.2.3`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/THetA.md b/docs/version-specific/supported-software/t/THetA.md deleted file mode 100644 index b4bf0d906b..0000000000 --- a/docs/version-specific/supported-software/t/THetA.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# THetA - -Tumor Heterogeneity Analysis (THetA) and THetA2 are algorithms that estimate the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.7`` | ``-Python-2.7.15`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/TINKER.md b/docs/version-specific/supported-software/t/TINKER.md index 683e256505..385d93258d 100644 --- a/docs/version-specific/supported-software/t/TINKER.md +++ b/docs/version-specific/supported-software/t/TINKER.md @@ -4,15 +4,13 @@ search: --- # TINKER -The TINKER molecular modeling software is a complete and general package for molecular mechanics and dynamics, with some special features for biopolymers. +The Tinker molecular modeling software is a complete and general package for molecular mechanics and dynamics, with some special features for biopolymers. -*homepage*: +*homepage*: version | toolchain --------|---------- -``8.6.1`` | ``foss/2018b`` -``8.7.2`` | ``foss/2019b`` -``8.8.1`` | ``foss/2020a`` +``8.11.3`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/TM-align.md b/docs/version-specific/supported-software/t/TM-align.md index 62b650ee32..3c48dd18fc 100644 --- a/docs/version-specific/supported-software/t/TM-align.md +++ b/docs/version-specific/supported-software/t/TM-align.md @@ -10,8 +10,6 @@ This package unifies protein structure alignment and RNA structure alignment in version | toolchain --------|---------- -``20180426`` | ``foss/2018b`` -``20180426`` | ``intel/2019a`` ``20190822`` | ``GCC/11.3.0`` diff --git a/docs/version-specific/supported-software/t/TOML-Fortran.md b/docs/version-specific/supported-software/t/TOML-Fortran.md index e54215c2e6..d54a7b67ec 100644 --- a/docs/version-specific/supported-software/t/TOML-Fortran.md +++ b/docs/version-specific/supported-software/t/TOML-Fortran.md @@ -16,6 +16,7 @@ version | toolchain ``0.3.1`` | ``GCC/11.3.0`` ``0.4.1`` | ``GCC/12.2.0`` ``0.4.1`` | ``intel-compilers/2022.2.1`` +``0.4.2`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/TRF.md b/docs/version-specific/supported-software/t/TRF.md index ca2ddcf8a2..2d5ab6e14b 100644 --- a/docs/version-specific/supported-software/t/TRF.md +++ b/docs/version-specific/supported-software/t/TRF.md @@ -4,19 +4,17 @@ search: --- # TRF -Tandem repeats finder: a program to analyze DNA sequences. Legacy version. +Tandem Repeats Finder: a program to analyze DNA sequences. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.09`` | ``-linux64`` | ``system`` -``4.09.1`` | | ``GCC/10.3.0`` -``4.09.1`` | | ``GCCcore/10.2.0`` -``4.09.1`` | | ``GCCcore/11.2.0`` -``4.09.1`` | | ``GCCcore/11.3.0`` -``4.09.1`` | | ``GCCcore/12.3.0`` -``4.09.1`` | | ``GCCcore/9.3.0`` +version | toolchain +--------|---------- +``4.09.1`` | ``GCC/10.3.0`` +``4.09.1`` | ``GCCcore/10.2.0`` +``4.09.1`` | ``GCCcore/11.2.0`` +``4.09.1`` | ``GCCcore/11.3.0`` +``4.09.1`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/TRIQS-cthyb.md b/docs/version-specific/supported-software/t/TRIQS-cthyb.md index d0cceb8112..2f816832a8 100644 --- a/docs/version-specific/supported-software/t/TRIQS-cthyb.md +++ b/docs/version-specific/supported-software/t/TRIQS-cthyb.md @@ -8,12 +8,10 @@ TRIQS (Toolbox for Research on Interacting Quantum Systems) is a scientific pro *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.2.0`` | ``-Python-2.7.15`` | ``foss/2019a`` -``3.0.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``3.1.0`` | | ``foss/2022a`` -``3.2.1`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``3.1.0`` | ``foss/2022a`` +``3.2.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/TRIQS-dft_tools.md b/docs/version-specific/supported-software/t/TRIQS-dft_tools.md index 3bab8b0db8..631532e06c 100644 --- a/docs/version-specific/supported-software/t/TRIQS-dft_tools.md +++ b/docs/version-specific/supported-software/t/TRIQS-dft_tools.md @@ -4,16 +4,14 @@ search: --- # TRIQS-dft_tools -TRIQS (Toolbox for Research on Interacting Quantum Systems) is a scientific project providing a set of C++ and Python libraries to develop new tools for the study of interacting quantum systems. This TRIQS-based-based application is aimed at ab-initio calculations for correlated materials, combining realistic DFT band-structure calculations with the dynamical mean-field theory. Together with the necessary tools to perform the DMFT self-consistency loop for realistic multi-band problems, the package provides a full-fledged charge self-consistent interface to the Wien2K package. In addition, if Wien2k is not available, it provides a generic interface for one-shot DFT+DMFT calculations, where only the single-particle Hamiltonian in orbital space has to be provided. +TRIQS (Toolbox for Research on Interacting Quantum Systems) is a scientific project providing a set of C++ and Python libraries to develop new tools for the study of interacting quantum systems. This TRIQS-based-based application is aimed at ab-initio calculations for correlated materials, combining realistic DFT band-structure calculation with the dynamical mean-field theory. Together with the necessary tools to perform the DMFT self-consistency loop for realistic multi-band problems, the package provides a full-fledged charge self-consistent interface to the Wien2K package. In addition, if Wien2k is not available, it provides a generic interface for one-shot DFT+DMFT calculations, where only the single-particle Hamiltonian in orbital space has to be provided. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.2.0`` | ``-Python-2.7.15`` | ``foss/2019a`` -``3.0.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``3.1.0`` | | ``foss/2022a`` -``3.2.0`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``3.1.0`` | ``foss/2022a`` +``3.2.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/TRIQS-tprf.md b/docs/version-specific/supported-software/t/TRIQS-tprf.md index 0c75ce5e55..d470e88080 100644 --- a/docs/version-specific/supported-software/t/TRIQS-tprf.md +++ b/docs/version-specific/supported-software/t/TRIQS-tprf.md @@ -8,12 +8,10 @@ TRIQS (Toolbox for Research on Interacting Quantum Systems) is a scientific pro *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.2.0`` | ``-Python-2.7.15`` | ``foss/2019a`` -``3.0.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``3.1.1`` | | ``foss/2022a`` -``3.2.1`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``3.1.1`` | ``foss/2022a`` +``3.2.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/TRIQS.md b/docs/version-specific/supported-software/t/TRIQS.md index 1421966123..cb5cb5771f 100644 --- a/docs/version-specific/supported-software/t/TRIQS.md +++ b/docs/version-specific/supported-software/t/TRIQS.md @@ -6,15 +6,12 @@ search: TRIQS (Toolbox for Research on Interacting Quantum Systems) is a scientific project providing a set of C++ and Python libraries to develop new tools for the study of interacting quantum systems. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.2.0`` | ``-Python-2.7.15`` | ``foss/2019a`` -``2.2.1`` | ``-Python-2.7.15`` | ``foss/2019a`` -``3.0.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``3.1.1`` | | ``foss/2022a`` -``3.2.0`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``3.1.1`` | ``foss/2022a`` +``3.2.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/TRUST.md b/docs/version-specific/supported-software/t/TRUST.md deleted file mode 100644 index 88c0ce5b29..0000000000 --- a/docs/version-specific/supported-software/t/TRUST.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# TRUST - -Tcr Receptor Utilities for Solid Tissue (TRUST) is a computational tool to analyze TCR and BCR sequences using unselected RNA sequencing data, profiled from solid tissues, including tumors. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0.2`` | ``-Python-2.7.14`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/TRUST4.md b/docs/version-specific/supported-software/t/TRUST4.md index 7fd42310bc..4044344b1c 100644 --- a/docs/version-specific/supported-software/t/TRUST4.md +++ b/docs/version-specific/supported-software/t/TRUST4.md @@ -4,7 +4,7 @@ search: --- # TRUST4 -Tcr Receptor Utilities for Solid Tissue (TRUST) is a computational tool to analyze TCR and BCR sequences using unselected RNA sequencing data, profiled from solid tissues, including tumors. TRUST4 performs de novo assembly on V, J, C genes including the hypervariable complementarity-determining region 3 (CDR3) and reports consensus of BCR/TCR sequences. +Tcr Receptor Utilities for Solid Tissue (TRUST) is a computational tool to analyze TCR and BCR sequences using unselected RNA sequencing data, profiled from solid tissues, including tumors. TRUST4 performs de novo assembly on V, J, C genes including the hypervariable complementarity-determining region 3 (CDR3) and reports consensus of BCR/TCR sequences. *homepage*: diff --git a/docs/version-specific/supported-software/t/TVB-deps.md b/docs/version-specific/supported-software/t/TVB-deps.md deleted file mode 100644 index 7c460d9741..0000000000 --- a/docs/version-specific/supported-software/t/TVB-deps.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# TVB-deps - -Bundle of dependency Python packages for TVB (The Virtual Brain) - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20160618`` | ``-Python-2.7.11`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/TVB.md b/docs/version-specific/supported-software/t/TVB.md deleted file mode 100644 index a2fd2fc7c5..0000000000 --- a/docs/version-specific/supported-software/t/TVB.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# TVB - -The Virtual Brain will deliver the first open simulation of the human brain based on individual large-scale connectivity. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.4.1`` | ``-Python-2.7.11`` | ``intel/2016a`` -``1.5`` | ``-Python-2.7.11`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/TagDust.md b/docs/version-specific/supported-software/t/TagDust.md index 338d8f8132..c58cd7f37f 100644 --- a/docs/version-specific/supported-software/t/TagDust.md +++ b/docs/version-specific/supported-software/t/TagDust.md @@ -11,7 +11,6 @@ Raw sequences produced by next generation sequencing (NGS) machines may contain version | toolchain --------|---------- ``2.33`` | ``GCCcore/10.2.0`` -``2.33`` | ``GCCcore/8.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/TagLib.md b/docs/version-specific/supported-software/t/TagLib.md deleted file mode 100644 index 0f09d2457b..0000000000 --- a/docs/version-specific/supported-software/t/TagLib.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# TagLib - -TagLib is a library for reading and editing the meta-data of several popular audio formats. - -*homepage*: - -version | toolchain ---------|---------- -``1.11.1`` | ``GCCcore/8.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/Taiyaki.md b/docs/version-specific/supported-software/t/Taiyaki.md deleted file mode 100644 index 85cf6ec682..0000000000 --- a/docs/version-specific/supported-software/t/Taiyaki.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Taiyaki - -Taiyaki is research software for training models for basecalling Oxford Nanopore reads. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``5.1.0-20200617`` | ``-Python-3.7.2-PyTorch-1.2.0`` | ``foss/2019a`` -``5.1.0-20200617`` | ``-Python-3.7.2-PyTorch-1.2.0`` | ``fosscuda/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/Tcl.md b/docs/version-specific/supported-software/t/Tcl.md index 2921995280..66977d37b2 100644 --- a/docs/version-specific/supported-software/t/Tcl.md +++ b/docs/version-specific/supported-software/t/Tcl.md @@ -4,15 +4,13 @@ search: --- # Tcl -Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more. +Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more. -*homepage*: +*homepage*: version | toolchain --------|---------- -``8.5.19`` | ``foss/2017a`` ``8.6.10`` | ``GCCcore/10.2.0`` -``8.6.10`` | ``GCCcore/9.3.0`` ``8.6.11`` | ``GCCcore/10.3.0`` ``8.6.11`` | ``GCCcore/11.2.0`` ``8.6.12`` | ``GCCcore/11.3.0`` @@ -21,32 +19,7 @@ version | toolchain ``8.6.13`` | ``GCCcore/13.1.0`` ``8.6.13`` | ``GCCcore/13.2.0`` ``8.6.14`` | ``GCCcore/13.3.0`` -``8.6.3`` | ``GCC/4.8.4`` -``8.6.3`` | ``GCC/4.9.2`` -``8.6.4`` | ``GCC/4.9.3-2.25`` -``8.6.4`` | ``GNU/4.9.3-2.25`` -``8.6.4`` | ``foss/2016a`` -``8.6.4`` | ``gimkl/2.11.5`` -``8.6.4`` | ``intel/2016.02-GCC-4.9`` -``8.6.4`` | ``intel/2016a`` -``8.6.4`` | ``iomkl/2016.07`` -``8.6.4`` | ``iomkl/2016.09-GCC-4.9.3-2.25`` -``8.6.5`` | ``GCC/4.9.3-2.25`` -``8.6.5`` | ``GCC/5.4.0-2.26`` -``8.6.5`` | ``GCCcore/6.3.0`` -``8.6.5`` | ``foss/2016.04`` -``8.6.5`` | ``foss/2016a`` -``8.6.5`` | ``foss/2016b`` -``8.6.5`` | ``iccifort/2016.3.210-GCC-5.4.0-2.26`` -``8.6.5`` | ``intel/2016b`` -``8.6.6`` | ``GCCcore/4.9.3`` -``8.6.6`` | ``GCCcore/6.3.0`` -``8.6.7`` | ``GCCcore/6.4.0`` -``8.6.8`` | ``GCCcore/6.4.0`` -``8.6.8`` | ``GCCcore/7.2.0`` -``8.6.8`` | ``GCCcore/7.3.0`` -``8.6.9`` | ``GCCcore/8.2.0`` -``8.6.9`` | ``GCCcore/8.3.0`` +``8.6.16`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/Telescope.md b/docs/version-specific/supported-software/t/Telescope.md deleted file mode 100644 index 913c2dcaa7..0000000000 --- a/docs/version-specific/supported-software/t/Telescope.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Telescope - -Single locus resolution of Transposable ELEment expression using next-generation sequencing. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.3`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/Teneto.md b/docs/version-specific/supported-software/t/Teneto.md deleted file mode 100644 index 5146b8810f..0000000000 --- a/docs/version-specific/supported-software/t/Teneto.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Teneto - -Teneto is package for deriving, analysing and plotting temporal network representations. Additional tools for temporal network analysis with neuroimaging contexts. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.5.1`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/TensorFlow.md b/docs/version-specific/supported-software/t/TensorFlow.md index 8d1abb63c9..25d9e42325 100644 --- a/docs/version-specific/supported-software/t/TensorFlow.md +++ b/docs/version-specific/supported-software/t/TensorFlow.md @@ -10,81 +10,17 @@ An open-source software library for Machine Intelligence version | versionsuffix | toolchain --------|---------------|---------- -``0.12.1`` | ``-Python-2.7.12`` | ``foss/2016b`` -``0.12.1`` | ``-Python-3.5.2`` | ``foss/2016b`` -``0.12.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.12.1`` | ``-Python-3.5.2`` | ``intel/2016b`` -``1.0.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.0.1`` | ``-Python-3.5.2`` | ``intel/2016b`` -``1.1.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``1.1.0`` | ``-Python-3.6.1`` | ``intel/2017a`` -``1.10.0`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` -``1.10.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.10.1`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` -``1.11.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.12.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.12.0`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` -``1.12.0`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` -``1.13.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.13.1`` | ``-Python-3.7.2`` | ``foss/2019a`` -``1.13.1`` | ``-Python-3.7.2`` | ``fosscuda/2019a`` -``1.14.0`` | ``-Python-3.7.2`` | ``foss/2019a`` -``1.14.0`` | ``-Python-3.7.2`` | ``fosscuda/2019a`` -``1.15.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.15.0`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``1.15.2`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.15.2`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``1.15.5`` | ``-Python-3.7.4-nompi`` | ``fosscuda/2019b`` -``1.15.5`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``1.2.0`` | ``-Python-3.6.1`` | ``intel/2017a`` -``1.2.1`` | ``-GPU-Python-3.5.2`` | ``foss/2016b`` -``1.2.1`` | ``-Python-3.5.2`` | ``foss/2016b`` -``1.3.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``1.3.0`` | ``-Python-3.6.1`` | ``intel/2017a`` -``1.3.0`` | ``-Python-3.6.3`` | ``intel/2017b`` -``1.4.0`` | ``-Python-3.6.3`` | ``foss/2017b`` -``1.4.0`` | ``-Python-3.6.3`` | ``intel/2017b`` -``1.4.1`` | ``-Python-3.6.3`` | ``foss/2017b`` -``1.5.0`` | ``-Python-3.6.3`` | ``foss/2017b`` -``1.5.0`` | ``-Python-3.6.3`` | ``intel/2017b`` -``1.6.0`` | ``-Python-3.6.4-CUDA-9.1.85`` | ``foss/2018a`` -``1.6.0`` | ``-Python-3.6.4`` | ``foss/2018a`` -``1.6.0`` | ``-Python-3.6.4`` | ``intel/2018a`` -``1.7.0`` | ``-Python-3.6.4-CUDA-9.1.85`` | ``foss/2018a`` -``1.7.0`` | ``-Python-3.6.4`` | ``foss/2018a`` -``1.8.0`` | ``-Python-2.7.14`` | ``foss/2017b`` -``1.8.0`` | ``-Python-3.6.3`` | ``foss/2017b`` -``1.8.0`` | ``-Python-3.6.4`` | ``foss/2018a`` -``1.8.0`` | ``-Python-2.7.14`` | ``fosscuda/2017b`` -``1.8.0`` | ``-Python-3.6.3`` | ``fosscuda/2017b`` -``1.8.0`` | ``-Python-3.6.4`` | ``fosscuda/2018a`` -``1.8.0`` | ``-Python-3.6.4`` | ``intel/2018a`` -``2.0.0`` | ``-Python-3.7.2`` | ``foss/2019a`` -``2.0.0`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``2.0.1`` | ``-Python-3.7.2`` | ``foss/2019a`` -``2.0.1`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``2.1.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``2.1.0`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` ``2.11.0`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``2.11.0`` | | ``foss/2022a`` ``2.13.0`` | | ``foss/2022b`` ``2.13.0`` | | ``foss/2023a`` ``2.15.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``2.15.1`` | | ``foss/2023a`` -``2.2.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``2.2.0`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``2.2.2`` | ``-Python-3.7.4`` | ``foss/2019b`` ``2.2.3`` | | ``foss/2020b`` -``2.3.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``2.3.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``2.3.1`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``2.3.1`` | ``-Python-3.8.2`` | ``fosscuda/2020a`` ``2.4.1`` | | ``foss/2020b`` -``2.4.1`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` ``2.4.1`` | | ``fosscuda/2020b`` ``2.4.4`` | | ``foss/2021a`` ``2.5.0`` | | ``foss/2020b`` -``2.5.0`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` ``2.5.0`` | | ``fosscuda/2020b`` ``2.5.3`` | ``-CUDA-11.3.1`` | ``foss/2021a`` ``2.5.3`` | | ``foss/2021a`` diff --git a/docs/version-specific/supported-software/t/TensorRT.md b/docs/version-specific/supported-software/t/TensorRT.md index 3ee3738e2f..4085b759be 100644 --- a/docs/version-specific/supported-software/t/TensorRT.md +++ b/docs/version-specific/supported-software/t/TensorRT.md @@ -10,7 +10,6 @@ NVIDIA TensorRT is a platform for high-performance deep learning inference version | versionsuffix | toolchain --------|---------------|---------- -``4.0.1.6`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` ``8.6.1`` | ``-CUDA-11.7.0`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/t/Tesla-Deployment-Kit.md b/docs/version-specific/supported-software/t/Tesla-Deployment-Kit.md deleted file mode 100644 index 1d31609eb5..0000000000 --- a/docs/version-specific/supported-software/t/Tesla-Deployment-Kit.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Tesla-Deployment-Kit - -The Tesla Deployment Kit is a set of tools provided primarily for the NVIDIA Tesla range of GPUs. They aim to empower users to better manage their NVIDIA GPUs by providing a broad range of functionalities. The kit contains: * NVIDIA Management Library (NVML), * Tesla Deployment Kit - Linux Edition (Aug 1st, 2013) - -*homepage*: - -version | toolchain ---------|---------- -``5.319.43`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/TestU01.md b/docs/version-specific/supported-software/t/TestU01.md new file mode 100644 index 0000000000..01808ec054 --- /dev/null +++ b/docs/version-specific/supported-software/t/TestU01.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# TestU01 + +Utilities for the empirical statistical testing of uniform random number generators + +*homepage*: + +version | toolchain +--------|---------- +``1.2.3`` | ``GCCcore/13.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/t/TetGen.md b/docs/version-specific/supported-software/t/TetGen.md index 8a153b8902..2174e5c259 100644 --- a/docs/version-specific/supported-software/t/TetGen.md +++ b/docs/version-specific/supported-software/t/TetGen.md @@ -6,11 +6,10 @@ search: A Quality Tetrahedral Mesh Generator and a 3D Delaunay Triangulator -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.5.0`` | ``GCCcore/6.4.0`` ``1.6.0`` | ``GCCcore/10.2.0`` diff --git a/docs/version-specific/supported-software/t/Text-CSV.md b/docs/version-specific/supported-software/t/Text-CSV.md deleted file mode 100644 index b21af0cd9d..0000000000 --- a/docs/version-specific/supported-software/t/Text-CSV.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Text-CSV - -Text-CSV parser - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.33`` | ``-Perl-5.22.1`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/Theano.md b/docs/version-specific/supported-software/t/Theano.md index 9864bfa463..dbebd845d7 100644 --- a/docs/version-specific/supported-software/t/Theano.md +++ b/docs/version-specific/supported-software/t/Theano.md @@ -6,37 +6,10 @@ search: Theano is a Python library that allows you to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``0.8.2`` | ``-Python-2.7.11`` | ``foss/2016a`` -``0.8.2`` | ``-Python-3.5.1`` | ``foss/2016a`` -``0.8.2`` | ``-Python-3.5.2`` | ``intel/2016b`` -``0.9.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``0.9.0`` | ``-Python-3.6.1`` | ``intel/2017a`` -``1.0.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``1.0.0`` | ``-Python-3.6.3`` | ``intel/2017b`` -``1.0.1`` | ``-Python-3.6.3`` | ``foss/2017b`` -``1.0.1`` | ``-Python-3.6.3`` | ``intel/2017b`` -``1.0.2`` | ``-Python-3.6.4`` | ``foss/2018a`` -``1.0.2`` | ``-Python-2.7.14`` | ``fosscuda/2017b`` -``1.0.2`` | ``-Python-3.6.3`` | ``fosscuda/2017b`` -``1.0.2`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` -``1.0.2`` | ``-Python-3.6.4`` | ``intel/2018a`` -``1.0.2`` | ``-Python-2.7.14`` | ``intelcuda/2017b`` -``1.0.2`` | ``-Python-3.6.3`` | ``intelcuda/2017b`` -``1.0.3`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.0.3`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` -``1.0.4`` | ``-Python-3.6.4`` | ``foss/2018a`` -``1.0.4`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.0.4`` | | ``foss/2019a`` -``1.0.4`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.0.4`` | ``-Python-3.8.2`` | ``foss/2020a`` -``1.0.4`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` -``1.0.4`` | | ``fosscuda/2019a`` -``1.0.4`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``1.0.4`` | ``-Python-3.7.4`` | ``intel/2019b`` ``1.1.2`` | ``-PyMC`` | ``foss/2020b`` ``1.1.2`` | ``-PyMC`` | ``foss/2021b`` ``1.1.2`` | ``-PyMC`` | ``fosscuda/2020b`` diff --git a/docs/version-specific/supported-software/t/TiCCutils.md b/docs/version-specific/supported-software/t/TiCCutils.md deleted file mode 100644 index 8f20999803..0000000000 --- a/docs/version-specific/supported-software/t/TiCCutils.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# TiCCutils - -TiCC utils is a collection of generic C++ software which is used in a lot of programs produced at Tilburg centre for Cognition and Communication (TiCC) at Tilburg University and Centre for Dutch Language and Speech at University of Antwerp. - -*homepage*: - -version | toolchain ---------|---------- -``0.11`` | ``foss/2016a`` -``0.21`` | ``iimpi/2019a`` -``0.21`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/TiMBL.md b/docs/version-specific/supported-software/t/TiMBL.md deleted file mode 100644 index 5ad93fa720..0000000000 --- a/docs/version-specific/supported-software/t/TiMBL.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# TiMBL - -TiMBL (Tilburg Memory Based Learner) is an open source software package implementing several memory-based learning algorithms, among which IB1-IG, an implementation of k-nearest neighbor classification with feature weighting suitable for symbolic feature spaces, and IGTree, a decision-tree approximation of IB1-IG. All implemented algorithms have in common that they store some representation of the training set explicitly in memory. During testing, new cases are classified by extrapolation from the most similar stored cases. - -*homepage*: - -version | toolchain ---------|---------- -``6.4.13`` | ``iimpi/2019a`` -``6.4.13`` | ``intel/2018b`` -``6.4.7`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/Tika.md b/docs/version-specific/supported-software/t/Tika.md deleted file mode 100644 index 1b5f2c6504..0000000000 --- a/docs/version-specific/supported-software/t/Tika.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Tika - -The Apache Tika toolkit detects and extracts metadata and text from over a thousand different file types (such as PPT, XLS, and PDF). - -*homepage*: - -version | toolchain ---------|---------- -``1.16`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/TinyDB.md b/docs/version-specific/supported-software/t/TinyDB.md deleted file mode 100644 index a717c3ff36..0000000000 --- a/docs/version-specific/supported-software/t/TinyDB.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# TinyDB - -TinyDB is a lightweight document oriented database optimized for your happiness :) It's written in pure Python and has no external dependencies. The target are small apps that would be blown away by a SQL-DB or an external database server. - -*homepage*: - -version | toolchain ---------|---------- -``3.15.2`` | ``GCCcore/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/Tk.md b/docs/version-specific/supported-software/t/Tk.md index 4f76c0cc44..d90214356d 100644 --- a/docs/version-specific/supported-software/t/Tk.md +++ b/docs/version-specific/supported-software/t/Tk.md @@ -8,47 +8,16 @@ Tk is an open source, cross-platform widget toolchain that provides a library of *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``8.6.10`` | | ``GCCcore/10.2.0`` -``8.6.10`` | | ``GCCcore/9.3.0`` -``8.6.11`` | | ``GCCcore/10.3.0`` -``8.6.11`` | | ``GCCcore/11.2.0`` -``8.6.12`` | | ``GCCcore/11.3.0`` -``8.6.12`` | | ``GCCcore/12.2.0`` -``8.6.13`` | | ``GCCcore/12.3.0`` -``8.6.13`` | | ``GCCcore/13.2.0`` -``8.6.14`` | | ``GCCcore/13.3.0`` -``8.6.3`` | ``-no-X11`` | ``GCC/4.8.4`` -``8.6.3`` | ``-no-X11`` | ``GCC/4.9.2`` -``8.6.4`` | ``-no-X11`` | ``GCC/4.9.3-2.25`` -``8.6.4`` | ``-no-X11`` | ``GNU/4.9.3-2.25`` -``8.6.4`` | ``-no-X11`` | ``foss/2016a`` -``8.6.4`` | ``-no-X11`` | ``gimkl/2.11.5`` -``8.6.4`` | ``-no-X11`` | ``intel/2016.02-GCC-4.9`` -``8.6.4`` | ``-libX11-1.6.3`` | ``intel/2016a`` -``8.6.4`` | ``-no-X11`` | ``intel/2016a`` -``8.6.4`` | | ``iomkl/2016.07`` -``8.6.4`` | | ``iomkl/2016.09-GCC-4.9.3-2.25`` -``8.6.5`` | | ``GCC/5.4.0-2.26`` -``8.6.5`` | | ``GCCcore/6.3.0`` -``8.6.5`` | | ``foss/2016.04`` -``8.6.5`` | | ``foss/2016a`` -``8.6.5`` | | ``foss/2016b`` -``8.6.5`` | | ``iccifort/2016.3.210-GCC-5.4.0-2.26`` -``8.6.5`` | | ``intel/2016b`` -``8.6.6`` | | ``foss/2017a`` -``8.6.6`` | | ``intel/2017a`` -``8.6.7`` | | ``foss/2017b`` -``8.6.7`` | | ``fosscuda/2017b`` -``8.6.7`` | | ``intel/2017b`` -``8.6.7`` | | ``intelcuda/2017b`` -``8.6.8`` | | ``GCCcore/6.4.0`` -``8.6.8`` | | ``GCCcore/7.3.0`` -``8.6.8`` | | ``foss/2018a`` -``8.6.8`` | | ``iomkl/2018a`` -``8.6.9`` | | ``GCCcore/8.2.0`` -``8.6.9`` | | ``GCCcore/8.3.0`` +version | toolchain +--------|---------- +``8.6.10`` | ``GCCcore/10.2.0`` +``8.6.11`` | ``GCCcore/10.3.0`` +``8.6.11`` | ``GCCcore/11.2.0`` +``8.6.12`` | ``GCCcore/11.3.0`` +``8.6.12`` | ``GCCcore/12.2.0`` +``8.6.13`` | ``GCCcore/12.3.0`` +``8.6.13`` | ``GCCcore/13.2.0`` +``8.6.14`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/Tkinter.md b/docs/version-specific/supported-software/t/Tkinter.md index 62c46c012c..dcfb0dd14c 100644 --- a/docs/version-specific/supported-software/t/Tkinter.md +++ b/docs/version-specific/supported-software/t/Tkinter.md @@ -6,49 +6,18 @@ search: Tkinter module, built with the Python buildsystem -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2.7.13`` | ``-Python-2.7.13`` | ``foss/2017a`` -``2.7.13`` | ``-Python-2.7.13`` | ``intel/2017a`` -``2.7.14`` | ``-Python-2.7.14`` | ``foss/2017b`` -``2.7.14`` | ``-Python-2.7.14`` | ``foss/2018a`` -``2.7.14`` | ``-Python-2.7.14`` | ``fosscuda/2017b`` -``2.7.14`` | ``-Python-2.7.14`` | ``intel/2017b`` -``2.7.14`` | ``-Python-2.7.14`` | ``intel/2018a`` -``2.7.14`` | ``-Python-2.7.14`` | ``intelcuda/2017b`` -``2.7.15`` | | ``GCCcore/8.2.0`` -``2.7.15`` | ``-Python-2.7.15`` | ``foss/2018b`` -``2.7.15`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` -``2.7.15`` | ``-Python-2.7.15`` | ``intel/2018b`` -``2.7.16`` | | ``GCCcore/8.3.0`` ``2.7.18`` | | ``GCCcore/10.2.0`` ``2.7.18`` | | ``GCCcore/11.2.0`` -``2.7.18`` | | ``GCCcore/9.3.0`` +``2.7.18`` | ``-Python-2.7.18`` | ``GCCcore/12.3.0`` ``3.10.4`` | | ``GCCcore/11.3.0`` ``3.10.8`` | | ``GCCcore/12.2.0`` ``3.11.3`` | | ``GCCcore/12.3.0`` ``3.11.5`` | | ``GCCcore/13.2.0`` ``3.12.3`` | | ``GCCcore/13.3.0`` -``3.6.1`` | ``-Python-3.6.1`` | ``foss/2017a`` -``3.6.1`` | ``-Python-3.6.1`` | ``intel/2017a`` -``3.6.2`` | ``-Python-3.6.2`` | ``foss/2017b`` -``3.6.3`` | ``-Python-3.6.3`` | ``foss/2017b`` -``3.6.3`` | ``-Python-3.6.3`` | ``fosscuda/2017b`` -``3.6.3`` | ``-Python-3.6.3`` | ``intel/2017b`` -``3.6.3`` | ``-Python-3.6.3`` | ``intelcuda/2017b`` -``3.6.4`` | ``-Python-3.6.4`` | ``foss/2018a`` -``3.6.4`` | ``-Python-3.6.4`` | ``intel/2018a`` -``3.6.4`` | ``-Python-3.6.4`` | ``iomkl/2018.02`` -``3.6.4`` | ``-Python-3.6.4`` | ``iomkl/2018a`` -``3.6.6`` | ``-Python-3.6.6`` | ``foss/2018b`` -``3.6.6`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` -``3.6.6`` | ``-Python-3.6.6`` | ``intel/2018b`` -``3.6.6`` | ``-Python-3.6.6`` | ``iomkl/2018b`` -``3.7.2`` | | ``GCCcore/8.2.0`` -``3.7.4`` | | ``GCCcore/8.3.0`` -``3.8.2`` | | ``GCCcore/9.3.0`` ``3.8.6`` | | ``GCCcore/10.2.0`` ``3.9.5`` | | ``GCCcore/10.3.0`` ``3.9.6`` | | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/t/ToFu.md b/docs/version-specific/supported-software/t/ToFu.md index a598508921..b59f69aaca 100644 --- a/docs/version-specific/supported-software/t/ToFu.md +++ b/docs/version-specific/supported-software/t/ToFu.md @@ -8,18 +8,10 @@ Tomography for Fusion. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.3.17`` | ``-Python-2.7.14`` | ``foss/2018a`` -``1.3.17`` | ``-Python-3.6.4`` | ``foss/2018a`` -``1.4.0`` | ``-Python-2.7.14`` | ``foss/2018a`` -``1.4.0`` | ``-Python-3.6.4`` | ``foss/2018a`` -``1.4.0`` | ``-Python-2.7.14`` | ``intel/2018a`` -``1.4.0`` | ``-Python-3.6.4`` | ``intel/2018a`` -``1.4.1`` | ``-Python-3.6.4`` | ``foss/2018a`` -``1.4.1`` | ``-Python-3.6.4`` | ``intel/2018a`` -``1.5.0`` | | ``foss/2020b`` -``1.5.0`` | | ``intel/2020b`` +version | toolchain +--------|---------- +``1.5.0`` | ``foss/2020b`` +``1.5.0`` | ``intel/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/Togl.md b/docs/version-specific/supported-software/t/Togl.md index b53637945c..fc46a8b423 100644 --- a/docs/version-specific/supported-software/t/Togl.md +++ b/docs/version-specific/supported-software/t/Togl.md @@ -13,7 +13,7 @@ version | toolchain ``2.0`` | ``GCCcore/10.2.0`` ``2.0`` | ``GCCcore/11.2.0`` ``2.0`` | ``GCCcore/11.3.0`` -``2.0`` | ``GCCcore/8.3.0`` +``2.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/Tombo.md b/docs/version-specific/supported-software/t/Tombo.md index cf1f7edca7..906b2ce7b0 100644 --- a/docs/version-specific/supported-software/t/Tombo.md +++ b/docs/version-specific/supported-software/t/Tombo.md @@ -8,9 +8,9 @@ Tombo is a suite of tools primarily for the identification of modified nucleotid *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.5.1`` | ``-Python-3.7.4`` | ``foss/2019b`` +version | toolchain +--------|---------- +``1.5.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/TopHat.md b/docs/version-specific/supported-software/t/TopHat.md index 2c32802d6b..0de4cc5866 100644 --- a/docs/version-specific/supported-software/t/TopHat.md +++ b/docs/version-specific/supported-software/t/TopHat.md @@ -10,20 +10,10 @@ TopHat is a fast splice junction mapper for RNA-Seq reads. version | versionsuffix | toolchain --------|---------------|---------- -``2.1.0`` | ``-Python-2.7.14`` | ``intel/2018a`` -``2.1.1`` | | ``foss/2016a`` -``2.1.1`` | | ``foss/2016b`` -``2.1.1`` | | ``foss/2017b`` -``2.1.1`` | | ``intel/2017a`` -``2.1.1`` | | ``intel/2017b`` ``2.1.2`` | ``-Python-2.7.18`` | ``GCC/10.2.0`` ``2.1.2`` | ``-Python-2.7.18`` | ``GCC/11.2.0`` ``2.1.2`` | ``-Python-2.7.18`` | ``GCC/11.3.0`` -``2.1.2`` | | ``foss/2018b`` -``2.1.2`` | | ``gompi/2019b`` -``2.1.2`` | ``-Python-2.7.18`` | ``gompi/2020a`` -``2.1.2`` | | ``iimpi/2019b`` -``2.1.2`` | ``-Python-2.7.18`` | ``iimpi/2020a`` +``2.1.2`` | ``-Python-2.7.18`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/TotalView.md b/docs/version-specific/supported-software/t/TotalView.md deleted file mode 100644 index f411772961..0000000000 --- a/docs/version-specific/supported-software/t/TotalView.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -search: - boost: 0.5 ---- -# TotalView - -TotalView is a GUI-based source code defect analysis tool that gives you unprecedented control over processes and thread execution and visibility into program state and variables. It allows you to debug one or many processes and/or threads in a single window with complete control over program execution. This allows you to set breakpoints, stepping line by line through the code on a single thread, or with coordinated groups of processes or threads, and run or halt arbitrary sets of processes or threads. You can reproduce and troubleshoot difficult problems that can occur in concurrent programs that take advantage of threads, OpenMP, MPI, GPUs or coprocessors. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``8.11.0-0`` | ``-linux-x86-64`` | ``system`` -``8.11.0-2`` | ``-linux-x86-64`` | ``system`` -``8.12.0-0`` | ``-linux-x86-64`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/Tracer.md b/docs/version-specific/supported-software/t/Tracer.md deleted file mode 100644 index a93ea5d6dd..0000000000 --- a/docs/version-specific/supported-software/t/Tracer.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Tracer - -Tracer is a graphical tool for visualization and diagnostics of MCMC output. - -*homepage*: - -version | toolchain ---------|---------- -``1.7.1`` | ``GCCcore/8.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/TransDecoder.md b/docs/version-specific/supported-software/t/TransDecoder.md index 79e00f7f06..f4941ff6cf 100644 --- a/docs/version-specific/supported-software/t/TransDecoder.md +++ b/docs/version-specific/supported-software/t/TransDecoder.md @@ -8,10 +8,10 @@ TransDecoder identifies candidate coding regions within transcript sequences, s *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1.0`` | ``-Perl-5.24.1`` | ``intel/2017a`` -``5.5.0`` | | ``GCC/11.3.0`` +version | toolchain +--------|---------- +``5.5.0`` | ``GCC/11.3.0`` +``5.7.1`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/Transformers.md b/docs/version-specific/supported-software/t/Transformers.md index 85f4b93195..ba20995b21 100644 --- a/docs/version-specific/supported-software/t/Transformers.md +++ b/docs/version-specific/supported-software/t/Transformers.md @@ -8,15 +8,15 @@ State-of-the-art Natural Language Processing for PyTorch and TensorFlow 2.0 *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.2.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``4.20.1`` | | ``foss/2021a`` -``4.21.1`` | | ``foss/2021b`` -``4.24.0`` | | ``foss/2022a`` -``4.29.2`` | | ``foss/2022a`` -``4.30.2`` | | ``foss/2022b`` -``4.39.3`` | | ``gfbf/2023a`` +version | toolchain +--------|---------- +``4.20.1`` | ``foss/2021a`` +``4.21.1`` | ``foss/2021b`` +``4.24.0`` | ``foss/2022a`` +``4.29.2`` | ``foss/2022a`` +``4.30.2`` | ``gfbf/2022b`` +``4.39.3`` | ``gfbf/2023a`` +``4.44.0`` | ``gfbf/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/Transrate.md b/docs/version-specific/supported-software/t/Transrate.md index d9b496b42d..541b7a7ac8 100644 --- a/docs/version-specific/supported-software/t/Transrate.md +++ b/docs/version-specific/supported-software/t/Transrate.md @@ -11,7 +11,6 @@ Transrate is software for de-novo transcriptome assembly quality analysis. It e version | toolchain --------|---------- ``1.0.3`` | ``GCC/12.3.0`` -``1.0.3`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/TreeMix.md b/docs/version-specific/supported-software/t/TreeMix.md index 191ae0f14f..936f7a9d7f 100644 --- a/docs/version-specific/supported-software/t/TreeMix.md +++ b/docs/version-specific/supported-software/t/TreeMix.md @@ -12,7 +12,6 @@ version | toolchain --------|---------- ``1.13`` | ``GCC/10.3.0`` ``1.13`` | ``GCC/11.2.0`` -``1.13`` | ``intel/2018a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/TreeShrink.md b/docs/version-specific/supported-software/t/TreeShrink.md deleted file mode 100644 index ef4af548de..0000000000 --- a/docs/version-specific/supported-software/t/TreeShrink.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# TreeShrink - -TreeShrink is an algorithm for detecting abnormally long branches in one or more phylogenetic trees. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.3.2`` | ``-Python-3.7.2`` | ``GCC/8.2.0-2.31.1`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/Triangle.md b/docs/version-specific/supported-software/t/Triangle.md index 3f3e6c515e..5af06fab87 100644 --- a/docs/version-specific/supported-software/t/Triangle.md +++ b/docs/version-specific/supported-software/t/Triangle.md @@ -11,13 +11,6 @@ Triangle generates exact Delaunay triangulations, constrained Delaunay triangula version | toolchain --------|---------- ``1.6`` | ``GCCcore/13.2.0`` -``1.6`` | ``GCCcore/6.4.0`` -``1.6`` | ``GCCcore/9.3.0`` -``1.6`` | ``foss/2016a`` -``1.6`` | ``foss/2018a`` -``1.6`` | ``intel/2016b`` -``1.6`` | ``intel/2017a`` -``1.6`` | ``intel/2018a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/Trilinos.md b/docs/version-specific/supported-software/t/Trilinos.md index 556095eac2..f5e581db31 100644 --- a/docs/version-specific/supported-software/t/Trilinos.md +++ b/docs/version-specific/supported-software/t/Trilinos.md @@ -10,11 +10,6 @@ The Trilinos Project is an effort to develop algorithms and enabling technologie version | versionsuffix | toolchain --------|---------------|---------- -``12.12.1`` | ``-Python-2.7.14`` | ``foss/2017b`` -``12.12.1`` | ``-Python-3.6.4`` | ``foss/2018a`` -``12.12.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``12.12.1`` | ``-Python-2.7.14`` | ``intel/2017b`` -``12.12.1`` | ``-Python-3.6.4`` | ``intel/2018a`` ``13.4.1`` | ``-zoltan`` | ``foss/2022a`` ``13.4.1`` | | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/t/Trim_Galore.md b/docs/version-specific/supported-software/t/Trim_Galore.md index 22cabe0fd0..b87089e2ba 100644 --- a/docs/version-specific/supported-software/t/Trim_Galore.md +++ b/docs/version-specific/supported-software/t/Trim_Galore.md @@ -4,29 +4,17 @@ search: --- # Trim_Galore -A wrapper tool around Cutadapt and FastQC to consistently apply quality and adapter trimming to FastQ files, with some extra functionality for MspI-digested RRBS-type (Reduced Representation Bisufite-Seq) libraries. +Trim Galore! is a wrapper script to automate quality and adapter trimming as well as quality control, with some added functionality to remove biased methylation positions for RRBS sequence files (for directional, non-directional (or paired-end) sequencing). -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``0.4.2`` | | ``foss/2016b`` -``0.4.4`` | | ``foss/2016b`` -``0.4.4`` | | ``intel/2017a`` -``0.5.0`` | | ``foss/2018b`` -``0.5.0`` | ``-Python-3.6.6`` | ``intel/2018b`` -``0.6.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``0.6.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.6.1`` | ``-Python-2.7.15`` | ``foss/2018b`` -``0.6.1`` | ``-Python-3.6.6`` | ``foss/2018b`` ``0.6.10`` | | ``GCCcore/11.2.0`` ``0.6.10`` | | ``GCCcore/11.3.0`` -``0.6.2`` | ``-Java-11`` | ``GCCcore/8.2.0`` -``0.6.2`` | ``-Python-2.7.15`` | ``foss/2018b`` -``0.6.2`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.6.5`` | ``-Java-11-Python-3.7.4`` | ``GCCcore/8.3.0`` +``0.6.10`` | ``-Python-2.7.18`` | ``GCCcore/12.3.0`` +``0.6.10`` | | ``GCCcore/12.3.0`` ``0.6.6`` | ``-Python-2.7.18`` | ``GCC/10.2.0`` -``0.6.6`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` ``0.6.7`` | | ``GCCcore/10.3.0`` diff --git a/docs/version-specific/supported-software/t/Trimmomatic.md b/docs/version-specific/supported-software/t/Trimmomatic.md index 511532cd10..04d8b596b7 100644 --- a/docs/version-specific/supported-software/t/Trimmomatic.md +++ b/docs/version-specific/supported-software/t/Trimmomatic.md @@ -4,16 +4,12 @@ search: --- # Trimmomatic -Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data.The selection of trimming steps and their associated parameters are supplied on the command line. +Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data.The selection of trimming steps and their associated parameters are supplied on the command line. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``0.32`` | ``-Java-1.7.0_80`` | ``system`` -``0.36`` | ``-Java-1.8.0_92`` | ``system`` -``0.38`` | ``-Java-1.8.0_162`` | ``system`` -``0.38`` | ``-Java-1.8`` | ``system`` ``0.39`` | ``-Java-1.8`` | ``system`` ``0.39`` | ``-Java-11`` | ``system`` ``0.39`` | ``-Java-17`` | ``system`` diff --git a/docs/version-specific/supported-software/t/Trinity.md b/docs/version-specific/supported-software/t/Trinity.md index 9c92841390..3a167aa146 100644 --- a/docs/version-specific/supported-software/t/Trinity.md +++ b/docs/version-specific/supported-software/t/Trinity.md @@ -8,22 +8,12 @@ Trinity represents a novel method for the efficient and robust de novo reconstru *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.10.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``2.15.1`` | | ``foss/2021b`` -``2.15.1`` | | ``foss/2022a`` -``2.2.0`` | | ``foss/2016a`` -``2.4.0`` | | ``foss/2017a`` -``2.5.1`` | | ``intel/2017a`` -``2.5.1`` | | ``intel/2017b`` -``2.6.6`` | | ``intel/2018a`` -``2.8.4`` | | ``foss/2018b`` -``2.8.5`` | ``-Java-11`` | ``GCC/8.3.0`` -``2.8.5`` | | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``2.9.1`` | ``-Python-2.7.16`` | ``foss/2019b`` -``2.9.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``2.9.1`` | | ``foss/2020b`` +version | toolchain +--------|---------- +``2.15.1`` | ``foss/2021b`` +``2.15.1`` | ``foss/2022a`` +``2.15.2`` | ``foss/2023a`` +``2.9.1`` | ``foss/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/Trinotate.md b/docs/version-specific/supported-software/t/Trinotate.md index 27a959ebec..e0532a0b82 100644 --- a/docs/version-specific/supported-software/t/Trinotate.md +++ b/docs/version-specific/supported-software/t/Trinotate.md @@ -11,6 +11,7 @@ Trinotate is a comprehensive annotation suite designed for automatic functional version | toolchain --------|---------- ``4.0.1`` | ``foss/2022a`` +``4.0.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/Trycycler.md b/docs/version-specific/supported-software/t/Trycycler.md index 9abcc9d720..5770e12517 100644 --- a/docs/version-specific/supported-software/t/Trycycler.md +++ b/docs/version-specific/supported-software/t/Trycycler.md @@ -10,7 +10,6 @@ Trycycler is a tool for generating consensus long-read assemblies for bacterial version | versionsuffix | toolchain --------|---------------|---------- -``0.3.3`` | ``-Python-3.8.2`` | ``foss/2020a`` ``0.5.2`` | | ``foss/2021a`` ``0.5.3`` | | ``foss/2021b`` ``0.5.5`` | ``-R-4.3.2`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/t/TurboVNC.md b/docs/version-specific/supported-software/t/TurboVNC.md index 58e21ffa71..57437a66b9 100644 --- a/docs/version-specific/supported-software/t/TurboVNC.md +++ b/docs/version-specific/supported-software/t/TurboVNC.md @@ -10,7 +10,6 @@ TurboVNC is a derivative of VNC (Virtual Network Computing) that is tuned to pro version | toolchain --------|---------- -``2.2.3`` | ``GCCcore/8.2.0`` ``3.0.1`` | ``GCCcore/11.3.0`` ``3.1.2`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/t/index.md b/docs/version-specific/supported-software/t/index.md index fc8722ff5d..96e0697df2 100644 --- a/docs/version-specific/supported-software/t/index.md +++ b/docs/version-specific/supported-software/t/index.md @@ -12,10 +12,7 @@ search: * [t-SNE-CUDA](t-SNE-CUDA.md) * [tabix](tabix.md) * [tabixpp](tabixpp.md) - * [taco](taco.md) * [TagDust](TagDust.md) - * [TagLib](TagLib.md) - * [Taiyaki](Taiyaki.md) * [TALON](TALON.md) * [TALYS](TALYS.md) * [TAMkin](TAMkin.md) @@ -26,15 +23,12 @@ search: * [TBA](TBA.md) * [tbb](tbb.md) * [tbl2asn](tbl2asn.md) - * [TCC](TCC.md) + * [tblis](tblis.md) * [Tcl](Tcl.md) * [TCLAP](TCLAP.md) * [tcsh](tcsh.md) * [tdlib](tdlib.md) - * [tecplot360ex](tecplot360ex.md) * [TELEMAC-MASCARET](TELEMAC-MASCARET.md) - * [Telescope](Telescope.md) - * [Teneto](Teneto.md) * [tensorboard](tensorboard.md) * [tensorboardX](tensorboardX.md) * [TensorFlow](TensorFlow.md) @@ -43,35 +37,27 @@ search: * [TensorFlow-Graphics](TensorFlow-Graphics.md) * [tensorflow-probability](tensorflow-probability.md) * [TensorRT](TensorRT.md) - * [terastructure](terastructure.md) + * [tensorstore](tensorstore.md) * [termcolor](termcolor.md) - * [Tesla-Deployment-Kit](Tesla-Deployment-Kit.md) * [tesseract](tesseract.md) - * [testpath](testpath.md) + * [test-drive](test-drive.md) + * [TestU01](TestU01.md) * [TetGen](TetGen.md) - * [TEToolkit](TEToolkit.md) * [TEtranscripts](TEtranscripts.md) * [texinfo](texinfo.md) * [texlive](texlive.md) - * [Text-CSV](Text-CSV.md) + * [text-unidecode](text-unidecode.md) * [TF-COMB](TF-COMB.md) * [TFEA](TFEA.md) * [Theano](Theano.md) * [ThemisPy](ThemisPy.md) - * [THetA](THetA.md) * [thirdorder](thirdorder.md) - * [thurstonianIRT](thurstonianIRT.md) - * [TiCCutils](TiCCutils.md) - * [tidybayes](tidybayes.md) * [tidymodels](tidymodels.md) - * [Tika](Tika.md) * [tiktoken](tiktoken.md) - * [TiMBL](TiMBL.md) * [time](time.md) * [timm](timm.md) * [TINKER](TINKER.md) * [tiny-cuda-nn](tiny-cuda-nn.md) - * [TinyDB](TinyDB.md) * [TinyXML](TinyXML.md) * [Tk](Tk.md) * [Tkinter](Tkinter.md) @@ -100,19 +86,15 @@ search: * [torchvf](torchvf.md) * [torchvision](torchvision.md) * [tornado](tornado.md) - * [TotalView](TotalView.md) * [tox](tox.md) * [tqdm](tqdm.md) - * [Tracer](Tracer.md) * [TranscriptClean](TranscriptClean.md) * [TransDecoder](TransDecoder.md) * [Transformers](Transformers.md) * [Transrate](Transrate.md) - * [travis](travis.md) * [TRAVIS-Analyzer](TRAVIS-Analyzer.md) - * [treatSens](treatSens.md) * [TreeMix](TreeMix.md) - * [TreeShrink](TreeShrink.md) + * [treeseg](treeseg.md) * [TRF](TRF.md) * [Triangle](Triangle.md) * [Trilinos](Trilinos.md) @@ -129,18 +111,12 @@ search: * [TRIQS-tprf](TRIQS-tprf.md) * [Triton](Triton.md) * [tRNAscan-SE](tRNAscan-SE.md) - * [TRUST](TRUST.md) * [TRUST4](TRUST4.md) + * [trusTEr](trusTEr.md) * [Trycycler](Trycycler.md) + * [tsai](tsai.md) * [tseriesEntropy](tseriesEntropy.md) - * [tsne](tsne.md) - * [turbinesFoam](turbinesFoam.md) * [TurboVNC](TurboVNC.md) - * [TVB](TVB.md) - * [tvb-data](tvb-data.md) - * [TVB-deps](TVB-deps.md) - * [tvb-framework](tvb-framework.md) - * [tvb-library](tvb-library.md) * [TWL-NINJA](TWL-NINJA.md) * [TXR](TXR.md) * [typing-extensions](typing-extensions.md) diff --git a/docs/version-specific/supported-software/t/tRNAscan-SE.md b/docs/version-specific/supported-software/t/tRNAscan-SE.md index 1b1c293eff..e8859c64da 100644 --- a/docs/version-specific/supported-software/t/tRNAscan-SE.md +++ b/docs/version-specific/supported-software/t/tRNAscan-SE.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``2.0.12`` | ``GCC/11.2.0`` ``2.0.12`` | ``foss/2022b`` +``2.0.12`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/tabix.md b/docs/version-specific/supported-software/t/tabix.md index 1baca98496..ca66defad1 100644 --- a/docs/version-specific/supported-software/t/tabix.md +++ b/docs/version-specific/supported-software/t/tabix.md @@ -14,13 +14,7 @@ version | toolchain ``0.2.6`` | ``GCCcore/10.3.0`` ``0.2.6`` | ``GCCcore/11.2.0`` ``0.2.6`` | ``GCCcore/11.3.0`` -``0.2.6`` | ``GCCcore/5.4.0`` -``0.2.6`` | ``GCCcore/6.4.0`` -``0.2.6`` | ``GCCcore/7.3.0`` -``0.2.6`` | ``GCCcore/8.3.0`` -``0.2.6`` | ``foss/2016a`` -``0.2.6`` | ``intel/2016a`` -``0.2.6`` | ``intel/2016b`` +``0.2.6`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/tabixpp.md b/docs/version-specific/supported-software/t/tabixpp.md index 375da903f6..b4ba07ea62 100644 --- a/docs/version-specific/supported-software/t/tabixpp.md +++ b/docs/version-specific/supported-software/t/tabixpp.md @@ -13,7 +13,6 @@ version | toolchain ``1.1.0`` | ``GCC/10.2.0`` ``1.1.0`` | ``GCC/10.3.0`` ``1.1.0`` | ``GCC/11.2.0`` -``1.1.0`` | ``GCC/9.3.0`` ``1.1.2`` | ``GCC/11.3.0`` ``1.1.2`` | ``GCC/12.2.0`` ``1.1.2`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/t/taco.md b/docs/version-specific/supported-software/t/taco.md deleted file mode 100644 index 5a5ff8804d..0000000000 --- a/docs/version-specific/supported-software/t/taco.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# taco - -Multi-sample transcriptome assembly from RNA-Seq - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.5.1`` | ``-Python-2.7.12`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/tantan.md b/docs/version-specific/supported-software/t/tantan.md index f92872e9e3..418cfc4a59 100644 --- a/docs/version-specific/supported-software/t/tantan.md +++ b/docs/version-specific/supported-software/t/tantan.md @@ -11,6 +11,7 @@ tantan identifies simple regions / low complexity / tandem repeats in DNA or pro version | toolchain --------|---------- ``40`` | ``GCC/11.2.0`` +``50`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/taxator-tk.md b/docs/version-specific/supported-software/t/taxator-tk.md index d67ed11cda..9836759caa 100644 --- a/docs/version-specific/supported-software/t/taxator-tk.md +++ b/docs/version-specific/supported-software/t/taxator-tk.md @@ -8,11 +8,10 @@ A set of programs for the taxonomic analysis of nucleotide sequence data *homepage*: -version | toolchain ---------|---------- -``1.3.3`` | ``GCC/10.2.0`` -``1.3.3`` | ``foss/2018b`` -``1.3.3`` | ``gompi/2019a`` +version | versionsuffix | toolchain +--------|---------------|---------- +``1.3.3`` | | ``GCC/10.2.0`` +``1.5.0`` | ``-Python-2.7.18`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/tbb.md b/docs/version-specific/supported-software/t/tbb.md index 8937459511..031362f078 100644 --- a/docs/version-specific/supported-software/t/tbb.md +++ b/docs/version-specific/supported-software/t/tbb.md @@ -4,43 +4,24 @@ search: --- # tbb -Intel Threading Building Blocks (Intel TBB) is a widely used, award-winning C++ template library for creating reliable, portable, and scalable parallel applications. Use Intel TBB for a simple and rapid way of developing robust task-based parallel applications that scale to available processor cores, are compatible with multiple environments, and are easier to maintain. Intel TBB is the most proficient way to implement future-proof parallel applications that tap into the power and performance of multicore and manycore hardware platforms. +Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2017.2.132`` | ``system`` -``2017.4.174`` | ``system`` -``2017.6.196`` | ``system`` -``2017_U5`` | ``GCCcore/5.4.0`` -``2017_U5`` | ``foss/2016b`` -``2017_U5`` | ``intel/2017a`` -``2017_U6`` | ``GCCcore/6.3.0`` -``2017_U6`` | ``intel/2017a`` -``2018_U1`` | ``GCCcore/6.4.0`` -``2018_U2`` | ``GCCcore/6.4.0`` -``2018_U3`` | ``GCCcore/6.4.0`` -``2018_U5`` | ``GCCcore/6.4.0`` -``2018_U5`` | ``GCCcore/7.3.0`` -``2019_U4`` | ``GCCcore/8.2.0`` -``2019_U9`` | ``GCCcore/8.3.0`` ``2020.1`` | ``GCCcore/12.3.0`` -``2020.1`` | ``GCCcore/9.3.0`` -``2020.2`` | ``GCCcore/8.3.0`` ``2020.3`` | ``GCCcore/10.2.0`` ``2020.3`` | ``GCCcore/10.3.0`` ``2020.3`` | ``GCCcore/11.2.0`` ``2020.3`` | ``GCCcore/12.3.0`` ``2021.10.0`` | ``GCCcore/12.2.0`` ``2021.11.0`` | ``GCCcore/12.3.0`` +``2021.13.0`` | ``GCCcore/13.2.0`` +``2021.13.0`` | ``GCCcore/13.3.0`` ``2021.4.0`` | ``GCCcore/11.2.0`` ``2021.5.0`` | ``GCCcore/11.3.0`` ``2021.9.0`` | ``GCCcore/12.2.0`` -``4.0.0.233`` | ``system`` -``4.0.5.339`` | ``system`` -``4.3.6.211`` | ``system`` -``4.4.2.152`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/tbl2asn.md b/docs/version-specific/supported-software/t/tbl2asn.md index e106adfb6a..976c4f75ba 100644 --- a/docs/version-specific/supported-software/t/tbl2asn.md +++ b/docs/version-specific/supported-software/t/tbl2asn.md @@ -10,11 +10,12 @@ Tbl2asn is a command-line program that automates the creation of sequence recor version | versionsuffix | toolchain --------|---------------|---------- -``20180227`` | ``-linux64`` | ``system`` ``20200302`` | ``-linux64`` | ``system`` ``20220427`` | ``-linux64`` | ``system`` +``20230713`` | | ``GCCcore/12.3.0`` +``20230713`` | | ``GCCcore/13.2.0`` +``20230713`` | | ``GCCcore/13.3.0`` ``20230713`` | ``-linux64`` | ``system`` -``25.8`` | ``-linux64`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/tblis.md b/docs/version-specific/supported-software/t/tblis.md new file mode 100644 index 0000000000..acf8473ea8 --- /dev/null +++ b/docs/version-specific/supported-software/t/tblis.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# tblis + +TBLIS is a library and framework for performing tensor operations, especially tensor contraction, using native algorithms. + +*homepage*: + +version | toolchain +--------|---------- +``20230422`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/t/tcsh.md b/docs/version-specific/supported-software/t/tcsh.md index 31cc848e7a..4f06613621 100644 --- a/docs/version-specific/supported-software/t/tcsh.md +++ b/docs/version-specific/supported-software/t/tcsh.md @@ -4,25 +4,19 @@ search: --- # tcsh -Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). It is a command language interpreter usable both as an interactive login shell and a shell script command processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax. +Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). It is a command language interpreter usable both as an interactive login shell and a shell script command processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax. -*homepage*: +*homepage*: version | toolchain --------|---------- -``6.19.00`` | ``intel/2016a`` -``6.20.00`` | ``GCCcore/5.4.0`` -``6.20.00`` | ``GCCcore/6.4.0`` -``6.20.00`` | ``GCCcore/7.3.0`` -``6.22.02`` | ``GCCcore/8.2.0`` -``6.22.02`` | ``GCCcore/8.3.0`` -``6.22.02`` | ``GCCcore/9.3.0`` ``6.22.03`` | ``GCCcore/10.2.0`` ``6.22.04`` | ``GCCcore/10.3.0`` ``6.24.01`` | ``GCCcore/11.2.0`` ``6.24.01`` | ``GCCcore/11.3.0`` ``6.24.07`` | ``GCCcore/12.2.0`` ``6.24.10`` | ``GCCcore/12.3.0`` +``6.24.13`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/tecplot360ex.md b/docs/version-specific/supported-software/t/tecplot360ex.md deleted file mode 100644 index 6b41ffb7dd..0000000000 --- a/docs/version-specific/supported-software/t/tecplot360ex.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# tecplot360ex - -Quickly plot and animate your CFD results exactly the way you want. Analyze complex solutions, arrange multiple layouts, and communicate your results with professional images and animations. - -*homepage*: - -version | toolchain ---------|---------- -``linux64`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/tensorboard.md b/docs/version-specific/supported-software/t/tensorboard.md index 4ff555d72d..9aa37e953e 100644 --- a/docs/version-specific/supported-software/t/tensorboard.md +++ b/docs/version-specific/supported-software/t/tensorboard.md @@ -13,6 +13,7 @@ version | toolchain ``2.10.0`` | ``foss/2022a`` ``2.15.1`` | ``gfbf/2022b`` ``2.15.1`` | ``gfbf/2023a`` +``2.18.0`` | ``gfbf/2023b`` ``2.8.0`` | ``foss/2021a`` diff --git a/docs/version-specific/supported-software/t/tensorboardX.md b/docs/version-specific/supported-software/t/tensorboardX.md index e05fcde5a3..ae4051cb59 100644 --- a/docs/version-specific/supported-software/t/tensorboardX.md +++ b/docs/version-specific/supported-software/t/tensorboardX.md @@ -10,13 +10,13 @@ Tensorboard for PyTorch. version | versionsuffix | toolchain --------|---------------|---------- -``2.0`` | ``-Python-3.7.4`` | ``foss/2019b`` ``2.1`` | ``-PyTorch-1.7.1`` | ``fosscuda/2020b`` ``2.2`` | ``-PyTorch-1.7.1`` | ``foss/2020b`` ``2.2`` | ``-PyTorch-1.7.1`` | ``fosscuda/2020b`` ``2.5.1`` | | ``foss/2022a`` ``2.6.2.2`` | | ``foss/2022b`` ``2.6.2.2`` | | ``foss/2023a`` +``2.6.2.2`` | | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/tensorflow-probability.md b/docs/version-specific/supported-software/t/tensorflow-probability.md index 85ea10f22c..a5ce762c85 100644 --- a/docs/version-specific/supported-software/t/tensorflow-probability.md +++ b/docs/version-specific/supported-software/t/tensorflow-probability.md @@ -17,7 +17,6 @@ version | versionsuffix | toolchain ``0.19.0`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``0.19.0`` | | ``foss/2022a`` ``0.20.0`` | | ``foss/2023a`` -``0.9.0`` | ``-Python-3.7.4`` | ``foss/2019b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/tensorstore.md b/docs/version-specific/supported-software/t/tensorstore.md new file mode 100644 index 0000000000..d538b99733 --- /dev/null +++ b/docs/version-specific/supported-software/t/tensorstore.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# tensorstore + +TensorStore is an open-source C++ and Python software library designed for storage and manipulation of large multi-dimensional arrays. + +*homepage*: + +version | toolchain +--------|---------- +``0.1.65`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/t/terastructure.md b/docs/version-specific/supported-software/t/terastructure.md deleted file mode 100644 index dda8f2686e..0000000000 --- a/docs/version-specific/supported-software/t/terastructure.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# terastructure - -TeraStructure is a new algorithm to fit Bayesian models of genetic variation in human populations on tera-sample-sized data sets (10^12 observed genotypes, i.e., 1M individuals at 1M SNPs). This package provides a scalable, multi-threaded C++ implementation that can be run on a single computer. - -*homepage*: - -version | toolchain ---------|---------- -``1.0`` | ``GCC/8.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/tesseract.md b/docs/version-specific/supported-software/t/tesseract.md index 2aca48897a..a7076d8afd 100644 --- a/docs/version-specific/supported-software/t/tesseract.md +++ b/docs/version-specific/supported-software/t/tesseract.md @@ -10,11 +10,10 @@ Tesseract is an optical character recognition engine version | toolchain --------|---------- -``4.0.0`` | ``GCCcore/7.3.0`` ``4.1.0`` | ``GCCcore/10.3.0`` -``4.1.0`` | ``GCCcore/8.2.0`` ``5.3.0`` | ``GCCcore/11.3.0`` ``5.3.4`` | ``GCCcore/12.3.0`` +``5.5.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/test-drive.md b/docs/version-specific/supported-software/t/test-drive.md new file mode 100644 index 0000000000..7e42826f54 --- /dev/null +++ b/docs/version-specific/supported-software/t/test-drive.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# test-drive + +This project offers a lightweight, procedural unit testing framework based on nothing but standard Fortran. + +*homepage*: + +version | toolchain +--------|---------- +``0.5.0`` | ``GCC/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/t/testpath.md b/docs/version-specific/supported-software/t/testpath.md deleted file mode 100644 index 65dcb79e2c..0000000000 --- a/docs/version-specific/supported-software/t/testpath.md +++ /dev/null @@ -1,22 +0,0 @@ ---- -search: - boost: 0.5 ---- -# testpath - -Test utilities for code working with files and commands - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.3`` | ``-Python-2.7.11`` | ``foss/2016a`` -``0.3`` | ``-Python-3.5.1`` | ``foss/2016a`` -``0.3`` | ``-Python-2.7.12`` | ``foss/2016b`` -``0.3`` | ``-Python-2.7.11`` | ``intel/2016a`` -``0.3`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.3`` | ``-Python-3.5.2`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/texinfo.md b/docs/version-specific/supported-software/t/texinfo.md index 855e3b8100..cf5e84b206 100644 --- a/docs/version-specific/supported-software/t/texinfo.md +++ b/docs/version-specific/supported-software/t/texinfo.md @@ -10,15 +10,7 @@ Texinfo is the official documentation format of the GNU project. version | toolchain --------|---------- -``4.13a`` | ``system`` -``5.2`` | ``GCC/4.8.2`` -``6.4`` | ``GCCcore/5.4.0`` -``6.5`` | ``GCCcore/6.4.0`` -``6.5`` | ``GCCcore/7.3.0`` -``6.6`` | ``GCCcore/8.2.0`` ``6.7`` | ``GCCcore/10.2.0`` -``6.7`` | ``GCCcore/8.3.0`` -``6.7`` | ``GCCcore/9.3.0`` ``6.8`` | ``GCCcore/11.2.0`` ``7.0.2`` | ``GCCcore/11.3.0`` ``7.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/t/texlive.md b/docs/version-specific/supported-software/t/texlive.md index 9e587303a7..fb2bc3b1a9 100644 --- a/docs/version-specific/supported-software/t/texlive.md +++ b/docs/version-specific/supported-software/t/texlive.md @@ -10,7 +10,6 @@ TeX is a typesetting language. Instead of visually formatting your text, you ent version | toolchain --------|---------- -``20200406`` | ``GCCcore/8.3.0`` ``20210324`` | ``GCC/10.3.0`` ``20210324`` | ``GCC/11.2.0`` ``20220321`` | ``GCC/11.2.0`` diff --git a/docs/version-specific/supported-software/t/text-unidecode.md b/docs/version-specific/supported-software/t/text-unidecode.md new file mode 100644 index 0000000000..b4a7e8890e --- /dev/null +++ b/docs/version-specific/supported-software/t/text-unidecode.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# text-unidecode + +Text-unidecode is the most basic port of the Text::Unidecode Perl library. + +*homepage*: + +version | toolchain +--------|---------- +``1.3`` | ``GCCcore/13.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/t/thurstonianIRT.md b/docs/version-specific/supported-software/t/thurstonianIRT.md deleted file mode 100644 index 50d42369b0..0000000000 --- a/docs/version-specific/supported-software/t/thurstonianIRT.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# thurstonianIRT - -Fit Thurstonian IRT models in R using Stan, lavaan, or Mplus - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.9.0`` | ``-R-3.6.0`` | ``foss/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/tidybayes.md b/docs/version-specific/supported-software/t/tidybayes.md deleted file mode 100644 index c80a1a65d3..0000000000 --- a/docs/version-specific/supported-software/t/tidybayes.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# tidybayes - -Compose data for and extract, manipulate, and visualize posterior draws from Bayesian models ('JAGS', 'Stan', 'rstanarm', 'brms', 'MCMCglmm', 'coda', ...) in a tidy data format. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1.1`` | ``-R-4.0.0`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/tidymodels.md b/docs/version-specific/supported-software/t/tidymodels.md index 4d111a5d29..f70e9cb3ab 100644 --- a/docs/version-specific/supported-software/t/tidymodels.md +++ b/docs/version-specific/supported-software/t/tidymodels.md @@ -4,14 +4,13 @@ search: --- # tidymodels -The tidy modeling "verse" is a collection of packages for modeling and statistical analysis that share the underlying design philosophy, grammar, and data structures of the tidyverse. +tidymodels is a 'meta-package' for modeling and statistical analysis that shares the underlying design philosophy, grammar, and data structures of the tidyverse. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1.0`` | ``-R-4.0.0`` | ``foss/2020a`` -``1.1.0`` | | ``foss/2022b`` +version | toolchain +--------|---------- +``1.1.0`` | ``foss/2022b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/tiktoken.md b/docs/version-specific/supported-software/t/tiktoken.md index c409e3582a..048036b5d7 100644 --- a/docs/version-specific/supported-software/t/tiktoken.md +++ b/docs/version-specific/supported-software/t/tiktoken.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``0.6.0`` | ``GCCcore/12.3.0`` ``0.7.0`` | ``GCCcore/12.3.0`` +``0.7.0`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/time.md b/docs/version-specific/supported-software/t/time.md index 23efa302c1..6b8f5b9a05 100644 --- a/docs/version-specific/supported-software/t/time.md +++ b/docs/version-specific/supported-software/t/time.md @@ -6,20 +6,17 @@ search: The `time' command runs another program, then displays information about the resources used by that program, collected by the system while the program was running. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.7`` | ``system`` ``1.9`` | ``GCCcore/10.2.0`` ``1.9`` | ``GCCcore/10.3.0`` ``1.9`` | ``GCCcore/11.2.0`` ``1.9`` | ``GCCcore/11.3.0`` ``1.9`` | ``GCCcore/12.2.0`` ``1.9`` | ``GCCcore/12.3.0`` -``1.9`` | ``GCCcore/7.3.0`` -``1.9`` | ``GCCcore/8.3.0`` -``1.9`` | ``GCCcore/9.3.0`` +``1.9`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/timm.md b/docs/version-specific/supported-software/t/timm.md index 47f3e68d9c..e427c05ddb 100644 --- a/docs/version-specific/supported-software/t/timm.md +++ b/docs/version-specific/supported-software/t/timm.md @@ -13,6 +13,7 @@ version | versionsuffix | toolchain ``0.6.13`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``0.9.7`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``1.0.8`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``1.0.8`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/tmux.md b/docs/version-specific/supported-software/t/tmux.md index 26564a608f..f33aec1e68 100644 --- a/docs/version-specific/supported-software/t/tmux.md +++ b/docs/version-specific/supported-software/t/tmux.md @@ -4,19 +4,13 @@ search: --- # tmux -tmux is a terminal multiplexer. It lets you switch easily between several programs in one terminal, detach them (they keep running in the background) and reattach them to a different terminal. +tmux is a terminal multiplexer: it enables a number of terminals to be created, accessed, and controlled from a single screen. tmux may be detached from a screen and continue running in the background, then later reattached. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.9a`` | ``GCC/4.9.2`` -``2.2`` | ``GCCcore/4.9.3`` -``2.3`` | ``GCC/5.4.0-2.26`` -``2.3`` | ``system`` -``3.1c`` | ``GCCcore/8.3.0`` ``3.2`` | ``GCCcore/10.2.0`` -``3.2`` | ``GCCcore/9.3.0`` ``3.2a`` | ``GCCcore/10.3.0`` ``3.2a`` | ``GCCcore/11.2.0`` ``3.2a`` | ``system`` @@ -27,6 +21,7 @@ version | toolchain ``3.4`` | ``GCCcore/13.2.0`` ``3.4`` | ``GCCcore/13.3.0`` ``3.4`` | ``system`` +``3.5a`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/tokenizers.md b/docs/version-specific/supported-software/t/tokenizers.md index c7a71305ff..e5c0903be8 100644 --- a/docs/version-specific/supported-software/t/tokenizers.md +++ b/docs/version-specific/supported-software/t/tokenizers.md @@ -11,8 +11,10 @@ Fast State-of-the-Art Tokenizers optimized for Research and Production version | toolchain --------|---------- ``0.12.1`` | ``GCCcore/10.3.0`` +``0.13.3`` | ``GCCcore/11.3.0`` ``0.13.3`` | ``GCCcore/12.2.0`` ``0.15.2`` | ``GCCcore/12.3.0`` +``0.19.1`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/torch-em.md b/docs/version-specific/supported-software/t/torch-em.md index 05d0bc2335..bceca1448b 100644 --- a/docs/version-specific/supported-software/t/torch-em.md +++ b/docs/version-specific/supported-software/t/torch-em.md @@ -4,7 +4,7 @@ search: --- # torch-em -Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch. +Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch. *homepage*: diff --git a/docs/version-specific/supported-software/t/torchaudio.md b/docs/version-specific/supported-software/t/torchaudio.md index 66a1a7add6..314d684f27 100644 --- a/docs/version-specific/supported-software/t/torchaudio.md +++ b/docs/version-specific/supported-software/t/torchaudio.md @@ -12,8 +12,6 @@ version | versionsuffix | toolchain --------|---------------|---------- ``0.12.0`` | ``-PyTorch-1.12.0-CUDA-11.7.0`` | ``foss/2022a`` ``0.12.0`` | ``-PyTorch-1.12.0`` | ``foss/2022a`` -``0.5.0`` | ``-Python-3.7.4-PyTorch-1.4.0`` | ``foss/2019b`` -``0.5.0`` | ``-Python-3.7.4-PyTorch-1.4.0`` | ``fosscuda/2019b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/torchdata.md b/docs/version-specific/supported-software/t/torchdata.md index 4c0cea639b..4669794eb3 100644 --- a/docs/version-specific/supported-software/t/torchdata.md +++ b/docs/version-specific/supported-software/t/torchdata.md @@ -11,6 +11,7 @@ TorchData is a prototype library of common modular data loading primitives for e version | versionsuffix | toolchain --------|---------------|---------- ``0.3.0`` | ``-PyTorch-1.11.0-CUDA-11.3.1`` | ``foss/2021a`` +``0.7.1`` | ``-PyTorch-2.1.2`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/torchtext.md b/docs/version-specific/supported-software/t/torchtext.md index cc5a298af5..b7e24fd8df 100644 --- a/docs/version-specific/supported-software/t/torchtext.md +++ b/docs/version-specific/supported-software/t/torchtext.md @@ -12,9 +12,8 @@ version | versionsuffix | toolchain --------|---------------|---------- ``0.10.0`` | ``-PyTorch-1.9.0`` | ``fosscuda/2020b`` ``0.14.1`` | ``-PyTorch-1.12.0`` | ``foss/2022a`` -``0.5.0`` | ``-PyTorch-1.4.0-Python-3.7.4`` | ``fosscuda/2019b`` -``0.7.0`` | ``-Python-3.7.4-PyTorch-1.6.0`` | ``foss/2019b`` -``0.7.0`` | ``-Python-3.7.4-PyTorch-1.6.0`` | ``fosscuda/2019b`` +``0.14.1`` | ``-PyTorch-1.13.1`` | ``foss/2022b`` +``0.16.2`` | ``-PyTorch-2.1.2`` | ``foss/2023b`` ``0.8.1`` | ``-PyTorch-1.7.1`` | ``fosscuda/2020b`` ``0.9.1`` | ``-PyTorch-1.8.1`` | ``fosscuda/2020b`` diff --git a/docs/version-specific/supported-software/t/torchvision.md b/docs/version-specific/supported-software/t/torchvision.md index a26466d247..ec83a0e3ac 100644 --- a/docs/version-specific/supported-software/t/torchvision.md +++ b/docs/version-specific/supported-software/t/torchvision.md @@ -21,22 +21,10 @@ version | versionsuffix | toolchain ``0.14.1`` | | ``foss/2022b`` ``0.16.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``0.16.0`` | | ``foss/2023a`` -``0.2.0`` | ``-Python-3.6.4-CUDA-9.1.85`` | ``foss/2018a`` -``0.2.0`` | ``-Python-3.6.4`` | ``intel/2018a`` -``0.2.2`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.2.2`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` -``0.3.0`` | ``-Python-3.7.2`` | ``foss/2019a`` -``0.4.2`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.4.2`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` +``0.17.0`` | | ``foss/2023b`` ``0.4.2`` | ``-PyTorch-1.3.1`` | ``fosscuda/2020b`` -``0.5.0`` | ``-Python-3.7.4-PyTorch-1.4.0`` | ``fosscuda/2019b`` -``0.7.0`` | ``-Python-3.7.4-PyTorch-1.6.0`` | ``foss/2019b`` -``0.7.0`` | ``-Python-3.7.4-PyTorch-1.6.0-imkl`` | ``fosscuda/2019b`` -``0.7.0`` | ``-Python-3.7.4-PyTorch-1.6.0`` | ``fosscuda/2019b`` ``0.8.2`` | ``-PyTorch-1.7.1`` | ``foss/2020b`` -``0.8.2`` | ``-Python-3.7.4-PyTorch-1.7.1`` | ``fosscuda/2019b`` ``0.8.2`` | ``-PyTorch-1.7.1`` | ``fosscuda/2020b`` -``0.9.1`` | ``-Python-3.7.4-PyTorch-1.8.1`` | ``fosscuda/2019b`` ``0.9.1`` | ``-PyTorch-1.8.1`` | ``fosscuda/2020b`` diff --git a/docs/version-specific/supported-software/t/tornado.md b/docs/version-specific/supported-software/t/tornado.md index 241bb525ce..a3f06adefd 100644 --- a/docs/version-specific/supported-software/t/tornado.md +++ b/docs/version-specific/supported-software/t/tornado.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``6.3.2`` | ``GCCcore/12.3.0`` ``6.4`` | ``GCCcore/13.2.0`` +``6.4.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/tqdm.md b/docs/version-specific/supported-software/t/tqdm.md index a75fd41e1f..5e30b7ef5c 100644 --- a/docs/version-specific/supported-software/t/tqdm.md +++ b/docs/version-specific/supported-software/t/tqdm.md @@ -8,27 +8,18 @@ A fast, extensible progress bar for Python and CLI *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``4.24.0`` | ``-Python-3.5.1`` | ``foss/2016a`` -``4.24.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``4.29.0`` | ``-Python-3.6.4`` | ``intel/2018a`` -``4.32.1`` | | ``GCCcore/8.2.0`` -``4.41.1`` | | ``GCCcore/8.3.0`` -``4.41.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``4.41.1`` | ``-Python-3.6.6`` | ``intel/2018b`` -``4.47.0`` | | ``GCCcore/9.3.0`` -``4.51.0`` | ``-Python-3.8.2`` | ``intel/2020a`` -``4.56.2`` | | ``GCCcore/10.2.0`` -``4.60.0`` | | ``GCCcore/10.2.0`` -``4.61.1`` | | ``GCCcore/10.3.0`` -``4.61.2`` | | ``GCCcore/10.3.0`` -``4.62.3`` | | ``GCCcore/11.2.0`` -``4.64.0`` | | ``GCCcore/11.3.0`` -``4.64.1`` | | ``GCCcore/12.2.0`` -``4.66.1`` | | ``GCCcore/12.3.0`` -``4.66.2`` | | ``GCCcore/13.2.0`` -``4.66.5`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``4.56.2`` | ``GCCcore/10.2.0`` +``4.60.0`` | ``GCCcore/10.2.0`` +``4.61.1`` | ``GCCcore/10.3.0`` +``4.61.2`` | ``GCCcore/10.3.0`` +``4.62.3`` | ``GCCcore/11.2.0`` +``4.64.0`` | ``GCCcore/11.3.0`` +``4.64.1`` | ``GCCcore/12.2.0`` +``4.66.1`` | ``GCCcore/12.3.0`` +``4.66.2`` | ``GCCcore/13.2.0`` +``4.66.5`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/travis.md b/docs/version-specific/supported-software/t/travis.md deleted file mode 100644 index 33630f9b13..0000000000 --- a/docs/version-specific/supported-software/t/travis.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# travis - -Travis CI Client (CLI and Ruby library) - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.8.2`` | ``-Ruby-2.3.1`` | ``system`` -``1.8.4`` | ``-Ruby-2.3.3`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/treatSens.md b/docs/version-specific/supported-software/t/treatSens.md deleted file mode 100644 index f1c3aadd50..0000000000 --- a/docs/version-specific/supported-software/t/treatSens.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# treatSens - -Utilities to investigate sensitivity to unmeasured confounding in parametric models with either binary or continuous treatment. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0-20201002`` | ``-R-4.0.0`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/treeseg.md b/docs/version-specific/supported-software/t/treeseg.md new file mode 100644 index 0000000000..70ae40fb8c --- /dev/null +++ b/docs/version-specific/supported-software/t/treeseg.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# treeseg + +treeseg has been developed to near-automatically segment individual tree point clouds from high-density larger-area lidar point clouds acquired in forests. A formal, albeit somewhat outdated description of the methods can be found in our paper (https://doi.org/10.1111/2041-210X.13121). + +*homepage*: + +version | toolchain +--------|---------- +``0.2.2`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/t/trimAl.md b/docs/version-specific/supported-software/t/trimAl.md index 3db3bccccf..fdaf50e0c9 100644 --- a/docs/version-specific/supported-software/t/trimAl.md +++ b/docs/version-specific/supported-software/t/trimAl.md @@ -10,13 +10,10 @@ EVB, FEP and LIE simulator. version | toolchain --------|---------- -``1.4.1`` | ``GCC/8.2.0-2.31.1`` ``1.4.1`` | ``GCCcore/10.3.0`` ``1.4.1`` | ``GCCcore/11.2.0`` ``1.4.1`` | ``GCCcore/11.3.0`` ``1.4.1`` | ``GCCcore/12.3.0`` -``1.4.1`` | ``GCCcore/9.3.0`` -``1.4.1`` | ``intel/2018a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/trimesh.md b/docs/version-specific/supported-software/t/trimesh.md index a67dec99d0..a3fe17801b 100644 --- a/docs/version-specific/supported-software/t/trimesh.md +++ b/docs/version-specific/supported-software/t/trimesh.md @@ -12,6 +12,8 @@ version | toolchain --------|---------- ``3.17.1`` | ``foss/2022a`` ``3.21.5`` | ``gfbf/2022b`` +``4.4.9`` | ``gfbf/2024a`` +``4.5.3`` | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/trusTEr.md b/docs/version-specific/supported-software/t/trusTEr.md new file mode 100644 index 0000000000..f1013ce120 --- /dev/null +++ b/docs/version-specific/supported-software/t/trusTEr.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# trusTEr + +Takes fastq files from 10x single cell RNA sequencing, clusters cells using Seurat, and can be used to produce read count matrices in a cluster level. You can also quantify reads per cluster having predefined clusters. + +*homepage*: + +version | toolchain +--------|---------- +``0.1.1-20241025`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/t/tsai.md b/docs/version-specific/supported-software/t/tsai.md new file mode 100644 index 0000000000..1454835e9a --- /dev/null +++ b/docs/version-specific/supported-software/t/tsai.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# tsai + +Time series Timeseries Deep Learning Machine Learning Python Pytorch fastai | State-of-the-art Deep Learning library for Time Series and Sequences in Pytorch / fastai. + +*homepage*: + +version | toolchain +--------|---------- +``0.3.9`` | ``foss/2023b`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/t/tsne.md b/docs/version-specific/supported-software/t/tsne.md deleted file mode 100644 index 5ef25c03c8..0000000000 --- a/docs/version-specific/supported-software/t/tsne.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# tsne - -Python library containing T-SNE algorithms. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1.8`` | ``-Python-2.7.16`` | ``intel/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/turbinesFoam.md b/docs/version-specific/supported-software/t/turbinesFoam.md deleted file mode 100644 index 0dfffc0eea..0000000000 --- a/docs/version-specific/supported-software/t/turbinesFoam.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# turbinesFoam - -turbinesFoam is a library for simulating wind and marine hydrokinetic turbines in OpenFOAM using the actuator line method. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20220516`` | ``-OpenFOAM-8`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/tvb-data.md b/docs/version-specific/supported-software/t/tvb-data.md deleted file mode 100644 index 9a87bca457..0000000000 --- a/docs/version-specific/supported-software/t/tvb-data.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# tvb-data - -The Virtual Brain Project (TVB Project) has the purpose of offering some modern tools to the Neurosciences community, for computing, simulating and analyzing functional and structural data of human brains. Various demonstration data for use with TVB. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.5`` | ``-Python-2.7.11`` | ``intel/2016a`` -``20150915`` | ``-Python-2.7.11`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/tvb-framework.md b/docs/version-specific/supported-software/t/tvb-framework.md deleted file mode 100644 index 8577323cca..0000000000 --- a/docs/version-specific/supported-software/t/tvb-framework.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# tvb-framework - -The Virtual Brain Project (TVB Project) has the purpose of offering some modern tools to the Neurosciences community, for computing, simulating and analyzing functional and structural data of human brains. TVB Scientific Library is the most important scientific contribution of TVB Project. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.5`` | ``-Python-2.7.11`` | ``intel/2016a`` -``20150921`` | ``-Python-2.7.11`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/tvb-library.md b/docs/version-specific/supported-software/t/tvb-library.md deleted file mode 100644 index bf558c93f2..0000000000 --- a/docs/version-specific/supported-software/t/tvb-library.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# tvb-library - -The Virtual Brain Project (TVB Project) has the purpose of offering some modern tools to the Neurosciences community, for computing, simulating and analyzing functional and structural data of human brains. TVB Scientific Library is the most important scientific contribution of TVB Project. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.5`` | ``-Python-2.7.11`` | ``intel/2016a`` -``20150922`` | ``-Python-2.7.11`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/typing-extensions.md b/docs/version-specific/supported-software/t/typing-extensions.md index 0d20c29756..1efce16992 100644 --- a/docs/version-specific/supported-software/t/typing-extensions.md +++ b/docs/version-specific/supported-software/t/typing-extensions.md @@ -8,19 +8,17 @@ Typing Extensions – Backported and Experimental Type Hints for Python *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.10.0.0`` | | ``GCCcore/10.3.0`` -``3.10.0.2`` | | ``GCCcore/11.2.0`` -``3.7.4.3`` | | ``GCCcore/10.2.0`` -``3.7.4.3`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``3.7.4.3`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` -``4.10.0`` | | ``GCCcore/13.2.0`` -``4.11.0`` | | ``GCCcore/13.3.0`` -``4.3.0`` | | ``GCCcore/11.3.0`` -``4.4.0`` | | ``GCCcore/10.3.0`` -``4.9.0`` | | ``GCCcore/12.2.0`` -``4.9.0`` | | ``GCCcore/12.3.0`` +version | toolchain +--------|---------- +``3.10.0.0`` | ``GCCcore/10.3.0`` +``3.10.0.2`` | ``GCCcore/11.2.0`` +``3.7.4.3`` | ``GCCcore/10.2.0`` +``4.10.0`` | ``GCCcore/13.2.0`` +``4.11.0`` | ``GCCcore/13.3.0`` +``4.3.0`` | ``GCCcore/11.3.0`` +``4.4.0`` | ``GCCcore/10.3.0`` +``4.9.0`` | ``GCCcore/12.2.0`` +``4.9.0`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/u/UCC-CUDA.md b/docs/version-specific/supported-software/u/UCC-CUDA.md index 7ee53c2385..0791a92f9e 100644 --- a/docs/version-specific/supported-software/u/UCC-CUDA.md +++ b/docs/version-specific/supported-software/u/UCC-CUDA.md @@ -4,7 +4,7 @@ search: --- # UCC-CUDA -UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. This module adds the UCC CUDA support. +UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. This module adds the UCC CUDA support. *homepage*: @@ -13,6 +13,8 @@ version | versionsuffix | toolchain ``1.0.0`` | ``-CUDA-11.7.0`` | ``GCCcore/11.3.0`` ``1.1.0`` | ``-CUDA-12.0.0`` | ``GCCcore/12.2.0`` ``1.2.0`` | ``-CUDA-12.1.1`` | ``GCCcore/12.3.0`` +``1.2.0`` | ``-CUDA-12.4.0`` | ``GCCcore/13.2.0`` +``1.3.0`` | ``-CUDA-12.6.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/u/UCC.md b/docs/version-specific/supported-software/u/UCC.md index ab6b0523a6..9835a193ba 100644 --- a/docs/version-specific/supported-software/u/UCC.md +++ b/docs/version-specific/supported-software/u/UCC.md @@ -4,7 +4,7 @@ search: --- # UCC -UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. +UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. *homepage*: @@ -15,6 +15,7 @@ version | toolchain ``1.2.0`` | ``GCCcore/12.3.0`` ``1.2.0`` | ``GCCcore/13.2.0`` ``1.3.0`` | ``GCCcore/13.3.0`` +``1.3.0`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/u/UCLUST.md b/docs/version-specific/supported-software/u/UCLUST.md deleted file mode 100644 index 19d18177d1..0000000000 --- a/docs/version-specific/supported-software/u/UCLUST.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# UCLUST - -UCLUST: Extreme high-speed sequence clustering, alignment and database search. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.22q`` | ``-i86linux64`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/u/UCX.md b/docs/version-specific/supported-software/u/UCX.md index aaea0fdd67..f842948a69 100644 --- a/docs/version-specific/supported-software/u/UCX.md +++ b/docs/version-specific/supported-software/u/UCX.md @@ -25,16 +25,7 @@ version | versionsuffix | toolchain ``1.16.0-rc4`` | | ``GCCcore/12.2.0`` ``1.16.0-rc4`` | | ``GCCcore/12.3.0`` ``1.16.0-rc4`` | | ``GCCcore/13.2.0`` -``1.3.1`` | | ``GCCcore/6.4.0`` -``1.3.1`` | | ``GCCcore/7.3.0`` -``1.5.0`` | | ``GCCcore/6.4.0`` -``1.5.0`` | | ``GCCcore/7.3.0`` -``1.5.0`` | | ``GCCcore/8.2.0`` -``1.5.0rc1`` | ``-hpcx`` | ``GCCcore/8.2.0`` -``1.5.1`` | | ``GCCcore/8.2.0`` -``1.6.1`` | | ``GCCcore/8.3.0`` -``1.8.0`` | ``-CUDA-11.0.2`` | ``GCCcore/9.3.0`` -``1.8.0`` | | ``GCCcore/9.3.0`` +``1.18.0`` | | ``GCCcore/14.2.0`` ``1.9.0`` | ``-CUDA-11.1.1`` | ``GCCcore/10.2.0`` ``1.9.0`` | ``-CUDA-11.2.1`` | ``GCCcore/10.2.0`` ``1.9.0`` | | ``GCCcore/10.2.0`` diff --git a/docs/version-specific/supported-software/u/UDUNITS.md b/docs/version-specific/supported-software/u/UDUNITS.md index 617902ecb4..2fac0f99cb 100644 --- a/docs/version-specific/supported-software/u/UDUNITS.md +++ b/docs/version-specific/supported-software/u/UDUNITS.md @@ -10,28 +10,14 @@ UDUNITS supports conversion of unit specifications between formatted and binary version | toolchain --------|---------- -``2.2.20`` | ``foss/2016a`` -``2.2.20`` | ``intel/2016b`` -``2.2.24`` | ``intel/2017a`` -``2.2.25`` | ``foss/2017b`` -``2.2.25`` | ``intel/2017b`` ``2.2.26`` | ``GCCcore/10.2.0`` -``2.2.26`` | ``GCCcore/8.2.0`` -``2.2.26`` | ``GCCcore/8.3.0`` -``2.2.26`` | ``GCCcore/9.3.0`` -``2.2.26`` | ``foss/2018a`` -``2.2.26`` | ``foss/2018b`` -``2.2.26`` | ``foss/2020a`` -``2.2.26`` | ``intel/2017b`` -``2.2.26`` | ``intel/2018a`` -``2.2.26`` | ``intel/2018b`` -``2.2.26`` | ``iomkl/2018b`` ``2.2.28`` | ``GCCcore/10.3.0`` ``2.2.28`` | ``GCCcore/11.2.0`` ``2.2.28`` | ``GCCcore/11.3.0`` ``2.2.28`` | ``GCCcore/12.2.0`` ``2.2.28`` | ``GCCcore/12.3.0`` ``2.2.28`` | ``GCCcore/13.2.0`` +``2.2.28`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/u/UFL.md b/docs/version-specific/supported-software/u/UFL.md deleted file mode 100644 index 4cab8a43e3..0000000000 --- a/docs/version-specific/supported-software/u/UFL.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# UFL - -The Unified Form Language (UFL) is a domain specific language for declaration of finite element discretizations of variational forms. More precisely, it defines a flexible interface for choosing finite element spaces and defining expressions for weak forms in a notation close to mathematical notation. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2018.1.0`` | ``-Python-3.6.4`` | ``foss/2018a`` -``2019.1.0`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/u/UMI-tools.md b/docs/version-specific/supported-software/u/UMI-tools.md index f709c90f88..2301b4add1 100644 --- a/docs/version-specific/supported-software/u/UMI-tools.md +++ b/docs/version-specific/supported-software/u/UMI-tools.md @@ -8,12 +8,9 @@ Tools for handling Unique Molecular Identifiers in NGS data sets *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.0`` | ``-Python-3.6.6`` | ``foss/2018b`` -``1.0.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.0.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``1.1.4`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``1.1.4`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/u/UNAFold.md b/docs/version-specific/supported-software/u/UNAFold.md deleted file mode 100644 index b75e9e2282..0000000000 --- a/docs/version-specific/supported-software/u/UNAFold.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# UNAFold - -The UNAFold package contains several programs for performing energy minimization and partition function calculations on nucleic acid sequences. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.8`` | ``-Perl-5.24.1`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/u/UQTk.md b/docs/version-specific/supported-software/u/UQTk.md deleted file mode 100644 index fab6b25bbb..0000000000 --- a/docs/version-specific/supported-software/u/UQTk.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# UQTk - -The UQ Toolkit (UQTk) is a collection of libraries and tools for the quantification of uncertainty in numerical model predictions. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.1.0`` | ``-Python-3.7.4`` | ``intel/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/u/USEARCH.md b/docs/version-specific/supported-software/u/USEARCH.md index 7be9b447b5..d5cb902f6c 100644 --- a/docs/version-specific/supported-software/u/USEARCH.md +++ b/docs/version-specific/supported-software/u/USEARCH.md @@ -11,9 +11,6 @@ USEARCH is a unique sequence analysis tool which offers search and clustering al version | versionsuffix | toolchain --------|---------------|---------- ``11.0.667`` | ``-i86linux32`` | ``system`` -``5.2.236-6.1.544`` | ``-i86linux32`` | ``system`` -``5.2.236`` | ``-i86linux32`` | ``system`` -``6.1.544`` | ``-i86linux32`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/u/USPEX.md b/docs/version-specific/supported-software/u/USPEX.md deleted file mode 100644 index 58962de33e..0000000000 --- a/docs/version-specific/supported-software/u/USPEX.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# USPEX - -USPEX (Universal Structure Predictor: Evolutionary Xtallography... and in Russian "uspekh" means "success" - owing to the high success rate and many useful results produced by this method) is a method developed by the Oganov laboratory since 2004. The problem of crystal structure prediction is very old and does, in fact, constitute the central problem of theoretical crystal chemistry. USPEX can also be used for finding low-energy metastable phases, as well as stable structures of nanoparticles, surface reconstructions, molecular packings in organic crystals, and for searching for materials with desired physical (mechanical, electronic) properties. The USPEX code is based on an efficient evolutionary algorithm developed by A.R. Oganov's group, but also has options for using alternative methods (random sampling, metadynamics, corrected particle swarm optimization algorithms). USPEX is interfaced with many ab initio codes, such as VASP, SIESTA, GULP, Quantum Espresso, CP2K, CASTEP, LAMMPS, and so on. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``9.4.4`` | ``-Python-2.7.12`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/u/UShER.md b/docs/version-specific/supported-software/u/UShER.md index 1f048b4b34..6ca2f4e3bd 100644 --- a/docs/version-specific/supported-software/u/UShER.md +++ b/docs/version-specific/supported-software/u/UShER.md @@ -4,7 +4,7 @@ search: --- # UShER -UShER is now a package consisting of a family of programs for rapid phylogenetic analyses, particularly suitable for the SARS-CoV-2 genomes. +UShER is now a package consisting of a family of programs for rapid phylogenetic analyses, particularly suitable for the SARS-CoV-2 genomes. *homepage*: diff --git a/docs/version-specific/supported-software/u/Umpire.md b/docs/version-specific/supported-software/u/Umpire.md index f8e05c94ee..c3fcf9541f 100644 --- a/docs/version-specific/supported-software/u/Umpire.md +++ b/docs/version-specific/supported-software/u/Umpire.md @@ -4,7 +4,7 @@ search: --- # Umpire -Umpire is a resource management library that allows the discovery, provision, and management of memory on machines with multiple memory devices like NUMA and GPUs. +Umpire is a resource management library that allows the discovery, provision, and management of memory on machines with multiple memory devices like NUMA and GPUs. *homepage*: diff --git a/docs/version-specific/supported-software/u/UnZip.md b/docs/version-specific/supported-software/u/UnZip.md index d394c446ec..47e18e1c98 100644 --- a/docs/version-specific/supported-software/u/UnZip.md +++ b/docs/version-specific/supported-software/u/UnZip.md @@ -19,11 +19,7 @@ version | toolchain ``6.0`` | ``GCCcore/13.1.0`` ``6.0`` | ``GCCcore/13.2.0`` ``6.0`` | ``GCCcore/13.3.0`` -``6.0`` | ``GCCcore/6.4.0`` -``6.0`` | ``GCCcore/7.3.0`` -``6.0`` | ``GCCcore/8.2.0`` -``6.0`` | ``GCCcore/8.3.0`` -``6.0`` | ``GCCcore/9.3.0`` +``6.0`` | ``GCCcore/14.2.0`` ``6.0`` | ``system`` diff --git a/docs/version-specific/supported-software/u/Uni-Core.md b/docs/version-specific/supported-software/u/Uni-Core.md index 8c85bd578d..94813eeec2 100644 --- a/docs/version-specific/supported-software/u/Uni-Core.md +++ b/docs/version-specific/supported-software/u/Uni-Core.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``0.0.3`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``0.0.3`` | | ``foss/2022a`` +``0.0.3`` | ``-CUDA-12.1.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/u/Unicycler.md b/docs/version-specific/supported-software/u/Unicycler.md index e45b0ff8a8..64169bdbe1 100644 --- a/docs/version-specific/supported-software/u/Unicycler.md +++ b/docs/version-specific/supported-software/u/Unicycler.md @@ -8,12 +8,12 @@ Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumin *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.4.7`` | ``-Python-3.7.2`` | ``foss/2019a`` -``0.4.8`` | ``-Python-3.8.2`` | ``gompi/2020a`` -``0.4.9`` | | ``gompi/2021a`` -``0.5.0`` | | ``gompi/2021b`` +version | toolchain +--------|---------- +``0.4.9`` | ``gompi/2021a`` +``0.5.0`` | ``gompi/2021b`` +``0.5.0`` | ``gompi/2023a`` +``0.5.1`` | ``gompi/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/u/Unidecode.md b/docs/version-specific/supported-software/u/Unidecode.md index 0e84ea28b7..892cdcc262 100644 --- a/docs/version-specific/supported-software/u/Unidecode.md +++ b/docs/version-specific/supported-software/u/Unidecode.md @@ -8,10 +8,9 @@ Python library for lossy ASCII transliterations of Unicode text (port of Text::U *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.1`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` -``1.3.6`` | | ``GCCcore/11.3.0`` +version | toolchain +--------|---------- +``1.3.6`` | ``GCCcore/11.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/u/index.md b/docs/version-specific/supported-software/u/index.md index 9d911de5f6..f04cfb2b9e 100644 --- a/docs/version-specific/supported-software/u/index.md +++ b/docs/version-specific/supported-software/u/index.md @@ -10,21 +10,15 @@ search: * [UCC](UCC.md) * [UCC-CUDA](UCC-CUDA.md) - * [UCLUST](UCLUST.md) * [UCX](UCX.md) * [UCX-CUDA](UCX-CUDA.md) * [ucx-py](ucx-py.md) * [UCX-ROCm](UCX-ROCm.md) - * [udocker](udocker.md) * [UDUNITS](UDUNITS.md) - * [UFL](UFL.md) * [Ultralytics](Ultralytics.md) * [umap-learn](umap-learn.md) * [UMI-tools](UMI-tools.md) - * [umi4cPackage](umi4cPackage.md) - * [umis](umis.md) * [Umpire](Umpire.md) - * [UNAFold](UNAFold.md) * [uncertainties](uncertainties.md) * [uncertainty-calibration](uncertainty-calibration.md) * [Uni-Core](Uni-Core.md) @@ -34,14 +28,12 @@ search: * [unifdef](unifdef.md) * [UniFrac](UniFrac.md) * [unimap](unimap.md) - * [units](units.md) + * [unittest-xml-reporting](unittest-xml-reporting.md) * [unixODBC](unixODBC.md) * [unrar](unrar.md) * [UnZip](UnZip.md) - * [UQTk](UQTk.md) * [USEARCH](USEARCH.md) * [UShER](UShER.md) - * [USPEX](USPEX.md) * [utf8proc](utf8proc.md) * [util-linux](util-linux.md) diff --git a/docs/version-specific/supported-software/u/udocker.md b/docs/version-specific/supported-software/u/udocker.md deleted file mode 100644 index 8d1e4dd337..0000000000 --- a/docs/version-specific/supported-software/u/udocker.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# udocker - -A basic user tool to execute simple docker containers in batch or interactive systems without root privileges. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.1`` | ``-Python-2.7.14`` | ``foss/2017b`` -``1.1.3`` | ``-Python-2.7.14`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/u/umap-learn.md b/docs/version-specific/supported-software/u/umap-learn.md index 432e396cdd..e09c0fc35a 100644 --- a/docs/version-specific/supported-software/u/umap-learn.md +++ b/docs/version-specific/supported-software/u/umap-learn.md @@ -4,7 +4,7 @@ search: --- # umap-learn -Uniform Manifold Approximation and Projection (UMAP) is a dimension reduction technique that can be used for visualisation similarly to t-SNE, but also for general non-linear dimension reduction. +Uniform Manifold Approximation and Projection (UMAP) is a dimension reduction technique that can be used for visualisation similarly to t-SNE, but also for general non-linear dimension reduction. *homepage*: diff --git a/docs/version-specific/supported-software/u/umi4cPackage.md b/docs/version-specific/supported-software/u/umi4cPackage.md deleted file mode 100644 index 59b8cfb695..0000000000 --- a/docs/version-specific/supported-software/u/umi4cPackage.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# umi4cPackage - -umi4cPackage is a processing and analysis pipeline for UMI-4C experiment. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20200116`` | ``-R-4.0.0`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/u/umis.md b/docs/version-specific/supported-software/u/umis.md deleted file mode 100644 index 85d367af1b..0000000000 --- a/docs/version-specific/supported-software/u/umis.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# umis - -Package for estimating UMI counts in Transcript Tag Counting data. - -*homepage*: - -version | toolchain ---------|---------- -``1.0.3`` | ``intel/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/u/uncertainties.md b/docs/version-specific/supported-software/u/uncertainties.md index 71f3f7bc3d..870256b25f 100644 --- a/docs/version-specific/supported-software/u/uncertainties.md +++ b/docs/version-specific/supported-software/u/uncertainties.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``3.1.7`` | ``foss/2021b`` ``3.1.7`` | ``foss/2023a`` +``3.2.2`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/u/unifdef.md b/docs/version-specific/supported-software/u/unifdef.md index 3feb42c585..c480cff2a8 100644 --- a/docs/version-specific/supported-software/u/unifdef.md +++ b/docs/version-specific/supported-software/u/unifdef.md @@ -11,6 +11,7 @@ unifdef - selectively remove C preprocessor conditionals The unifdef utility sel version | toolchain --------|---------- ``2.12`` | ``GCCcore/11.3.0`` +``2.12`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/u/units.md b/docs/version-specific/supported-software/u/units.md deleted file mode 100644 index de76be04e0..0000000000 --- a/docs/version-specific/supported-software/u/units.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# units - -GNU Units converts quantities expressed in various systems of measurement to their equivalents in other systems of measurement. Like many similar programs, it can handle multiplicative scale changes. It can also handle nonlinear conversions such as Fahrenheit to Celsius or wire gauge, and it can convert from and to sums of units, such as converting between meters and feet plus inches. - -*homepage*: - -version | toolchain ---------|---------- -``2.19`` | ``GCCcore/8.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/u/unittest-xml-reporting.md b/docs/version-specific/supported-software/u/unittest-xml-reporting.md new file mode 100644 index 0000000000..34a479b79f --- /dev/null +++ b/docs/version-specific/supported-software/u/unittest-xml-reporting.md @@ -0,0 +1,24 @@ +--- +search: + boost: 0.5 +--- +# unittest-xml-reporting + +A unittest test runner that can save test results to XML files in xUnit format. The files can be consumed by a wide range of tools, such as build systems, IDEs and continuous integration servers. + +*homepage*: + +version | toolchain +--------|---------- +``3.1.0`` | ``GCCcore/10.3.0`` +``3.1.0`` | ``GCCcore/11.2.0`` +``3.1.0`` | ``GCCcore/11.3.0`` +``3.1.0`` | ``GCCcore/12.2.0`` +``3.1.0`` | ``GCCcore/12.3.0`` +``3.1.0`` | ``GCCcore/13.2.0`` +``3.1.0`` | ``GCCcore/13.3.0`` +``3.1.0`` | ``GCCcore/14.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/u/unixODBC.md b/docs/version-specific/supported-software/u/unixODBC.md index 09d5375e37..00f84daf0f 100644 --- a/docs/version-specific/supported-software/u/unixODBC.md +++ b/docs/version-specific/supported-software/u/unixODBC.md @@ -12,7 +12,6 @@ version | toolchain --------|---------- ``2.3.11`` | ``foss/2022b`` ``2.3.12`` | ``GCCcore/12.3.0`` -``2.3.7`` | ``foss/2018b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/u/unrar.md b/docs/version-specific/supported-software/u/unrar.md index 715d92ccc6..f4999b78bb 100644 --- a/docs/version-specific/supported-software/u/unrar.md +++ b/docs/version-specific/supported-software/u/unrar.md @@ -10,8 +10,6 @@ RAR is a powerful archive manager. version | toolchain --------|---------- -``5.6.1`` | ``GCCcore/7.3.0`` -``5.7.3`` | ``GCCcore/8.2.0`` ``6.0.2`` | ``GCCcore/10.2.0`` diff --git a/docs/version-specific/supported-software/u/utf8proc.md b/docs/version-specific/supported-software/u/utf8proc.md index 065675e7fd..2f738b742a 100644 --- a/docs/version-specific/supported-software/u/utf8proc.md +++ b/docs/version-specific/supported-software/u/utf8proc.md @@ -4,23 +4,20 @@ search: --- # utf8proc -utf8proc is a small, clean C library that provides Unicode normalization, case-folding, and other operations for data in the UTF-8 encoding. +utf8proc is a small, clean C library that provides Unicode normalization, case-folding, and other operations for data in the UTF-8 encoding. *homepage*: version | toolchain --------|---------- -``2.2.0`` | ``GCCcore/6.4.0`` -``2.3.0`` | ``GCCcore/8.2.0`` ``2.5.0`` | ``GCCcore/10.2.0`` -``2.5.0`` | ``GCCcore/8.3.0`` -``2.5.0`` | ``GCCcore/9.3.0`` ``2.6.1`` | ``GCCcore/10.3.0`` ``2.6.1`` | ``GCCcore/11.2.0`` ``2.7.0`` | ``GCCcore/11.3.0`` ``2.8.0`` | ``GCCcore/12.2.0`` ``2.8.0`` | ``GCCcore/12.3.0`` ``2.9.0`` | ``GCCcore/13.2.0`` +``2.9.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/u/util-linux.md b/docs/version-specific/supported-software/u/util-linux.md index 6ae96add96..4161672ada 100644 --- a/docs/version-specific/supported-software/u/util-linux.md +++ b/docs/version-specific/supported-software/u/util-linux.md @@ -6,30 +6,10 @@ search: Set of Linux utilities -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.27.1`` | ``foss/2016a`` -``2.27.1`` | ``intel/2016a`` -``2.28`` | ``foss/2016a`` -``2.28`` | ``intel/2016a`` -``2.28.1`` | ``intel/2016b`` -``2.29`` | ``foss/2016b`` -``2.29`` | ``intel/2016b`` -``2.29.2`` | ``GCCcore/6.3.0`` -``2.29.2`` | ``intel/2017a`` -``2.30`` | ``GCCcore/6.4.0`` -``2.30.1`` | ``GCCcore/6.3.0`` -``2.30.1`` | ``foss/2017a`` -``2.31`` | ``GCCcore/6.4.0`` -``2.31.1`` | ``GCCcore/6.4.0`` -``2.32`` | ``GCCcore/6.4.0`` -``2.32`` | ``GCCcore/7.3.0`` -``2.32.1`` | ``GCCcore/7.3.0`` -``2.33`` | ``GCCcore/8.2.0`` -``2.34`` | ``GCCcore/8.3.0`` -``2.35`` | ``GCCcore/9.3.0`` ``2.36`` | ``GCCcore/10.2.0`` ``2.36`` | ``GCCcore/10.3.0`` ``2.37`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/v/V8.md b/docs/version-specific/supported-software/v/V8.md deleted file mode 100644 index c0f304a95c..0000000000 --- a/docs/version-specific/supported-software/v/V8.md +++ /dev/null @@ -1,21 +0,0 @@ ---- -search: - boost: 0.5 ---- -# V8 - -R interface to Google's open source JavaScript engine - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.2`` | ``-R-3.5.1`` | ``foss/2018b`` -``2.3`` | ``-R-3.6.0`` | ``foss/2019a`` -``2.3`` | ``-R-3.6.0`` | ``intel/2019a`` -``3.2.0`` | ``-R-3.6.2`` | ``foss/2019b`` -``3.4.0`` | ``-R-4.0.0`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/v/VAMPIRE-ASM.md b/docs/version-specific/supported-software/v/VAMPIRE-ASM.md index e82754159d..b8b5d6403b 100644 --- a/docs/version-specific/supported-software/v/VAMPIRE-ASM.md +++ b/docs/version-specific/supported-software/v/VAMPIRE-ASM.md @@ -4,7 +4,7 @@ search: --- # VAMPIRE-ASM -Vampire is designed from the ground-up to be an easy to use, fast, open-source and extensible software package capable of modelling almost any magnetic material with atomic resolution. +Vampire is designed from the ground-up to be an easy to use, fast, open-source and extensible software package capable of modelling almost any magnetic material with atomic resolution. *homepage*: diff --git a/docs/version-specific/supported-software/v/VASP.md b/docs/version-specific/supported-software/v/VASP.md index c0f13c6d21..15d31cd34b 100644 --- a/docs/version-specific/supported-software/v/VASP.md +++ b/docs/version-specific/supported-software/v/VASP.md @@ -6,11 +6,10 @@ search: The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic scale materials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics, from first principles. -*homepage*: +*homepage*: version | toolchain --------|---------- -``5.4.1`` | ``intel/2016.02-GCC-4.9`` ``6.3.2`` | ``nvofbf/2022.07`` diff --git a/docs/version-specific/supported-software/n/NEXUS-CL.md b/docs/version-specific/supported-software/v/VASPKIT.md similarity index 72% rename from docs/version-specific/supported-software/n/NEXUS-CL.md rename to docs/version-specific/supported-software/v/VASPKIT.md index 2510a23620..b73b711341 100644 --- a/docs/version-specific/supported-software/n/NEXUS-CL.md +++ b/docs/version-specific/supported-software/v/VASPKIT.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# NEXUS-CL +# VASPKIT -The NEXUS Class Library is a C++ library for parsing NEXUS files. +VASPKIT aims at providing a powerful and user-friendly interface to perform high throughput analysis of various material properties from the raw calculated data using the widely-used VASP code. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.1.18`` | ``GCC/8.2.0-2.31.1`` +``1.5.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/v/VAtools.md b/docs/version-specific/supported-software/v/VAtools.md deleted file mode 100644 index b8faaede64..0000000000 --- a/docs/version-specific/supported-software/v/VAtools.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# VAtools - -VAtools is a python package that includes several tools to annotate VCF files with data from other tools. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0.1`` | ``-Python-3.6.6`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/v/VCF-kit.md b/docs/version-specific/supported-software/v/VCF-kit.md deleted file mode 100644 index 0066aa096b..0000000000 --- a/docs/version-specific/supported-software/v/VCF-kit.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# VCF-kit - -VCF-kit is a command-line based collection of utilities for performing analysis on Variant Call Format (VCF) files. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1.6`` | ``-Python-2.7.15`` | ``intel/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/v/VCFtools.md b/docs/version-specific/supported-software/v/VCFtools.md index db8d25108e..38deab26c3 100644 --- a/docs/version-specific/supported-software/v/VCFtools.md +++ b/docs/version-specific/supported-software/v/VCFtools.md @@ -4,29 +4,19 @@ search: --- # VCFtools -The aim of VCFtools is to provide easily accessible methods for working with complex genetic variation data in the form of VCF files. +The aim of VCFtools is to provide easily accessible methods for working with complex genetic variation data in the form of VCF files. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1.14`` | ``-Perl-5.22.1`` | ``foss/2016a`` -``0.1.14`` | ``-Perl-5.22.1`` | ``intel/2016a`` -``0.1.15`` | ``-Perl-5.24.0`` | ``foss/2016b`` -``0.1.15`` | ``-Perl-5.26.0`` | ``foss/2017b`` -``0.1.15`` | ``-Perl-5.26.1`` | ``foss/2018a`` -``0.1.15`` | ``-Perl-5.26.0`` | ``intel/2017b`` -``0.1.16`` | | ``GCC/10.2.0`` -``0.1.16`` | | ``GCC/10.3.0`` -``0.1.16`` | | ``GCC/11.2.0`` -``0.1.16`` | | ``GCC/11.3.0`` -``0.1.16`` | | ``GCC/12.2.0`` -``0.1.16`` | | ``GCC/12.3.0`` -``0.1.16`` | | ``GCC/8.3.0`` -``0.1.16`` | | ``GCC/9.3.0`` -``0.1.16`` | ``-Perl-5.28.0`` | ``foss/2018b`` -``0.1.16`` | | ``iccifort/2019.5.281`` -``0.1.16`` | ``-Perl-5.28.0`` | ``intel/2018b`` +version | toolchain +--------|---------- +``0.1.16`` | ``GCC/10.2.0`` +``0.1.16`` | ``GCC/10.3.0`` +``0.1.16`` | ``GCC/11.2.0`` +``0.1.16`` | ``GCC/11.3.0`` +``0.1.16`` | ``GCC/12.2.0`` +``0.1.16`` | ``GCC/12.3.0`` +``0.1.16`` | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/v/VEGAS.md b/docs/version-specific/supported-software/v/VEGAS.md deleted file mode 100644 index 23b8a1f1b3..0000000000 --- a/docs/version-specific/supported-software/v/VEGAS.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# VEGAS - -VEGAS (Versatile Gene-based Association Study) is a free program for performing gene-based tests for association using the results from genetic association studies - -*homepage*: - -version | toolchain ---------|---------- -``0.8.27`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/v/VEP.md b/docs/version-specific/supported-software/v/VEP.md index 2218a64db2..d1b7fd2c54 100644 --- a/docs/version-specific/supported-software/v/VEP.md +++ b/docs/version-specific/supported-software/v/VEP.md @@ -8,18 +8,14 @@ Variant Effect Predictor (VEP) determines the effect of your variants (SNPs, in *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``103.1`` | | ``GCC/10.2.0`` -``105`` | | ``GCC/11.2.0`` -``107`` | | ``GCC/11.3.0`` -``111`` | | ``GCC/12.2.0`` -``93.4`` | ``-Perl-5.26.1`` | ``intel/2018a`` -``94.0`` | ``-Perl-5.28.0`` | ``foss/2018b`` -``94.5`` | ``-Perl-5.26.0`` | ``foss/2017b`` -``94.5`` | ``-Perl-5.26.0`` | ``intel/2017b`` -``95.0`` | ``-Perl-5.28.0`` | ``foss/2018b`` -``96.0`` | ``-Perl-5.28.1`` | ``foss/2019a`` +version | toolchain +--------|---------- +``103.1`` | ``GCC/10.2.0`` +``105`` | ``GCC/11.2.0`` +``107`` | ``GCC/11.3.0`` +``111`` | ``GCC/12.2.0`` +``113.0`` | ``GCC/12.3.0`` +``113.3`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/v/VERSE.md b/docs/version-specific/supported-software/v/VERSE.md deleted file mode 100644 index 35fd387bbe..0000000000 --- a/docs/version-specific/supported-software/v/VERSE.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# VERSE - -A versatile and efficient RNA-Seq read counting tool - -*homepage*: - -version | toolchain ---------|---------- -``0.1.5`` | ``foss/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/v/VESTA.md b/docs/version-specific/supported-software/v/VESTA.md index bd9703057c..491ccb8331 100644 --- a/docs/version-specific/supported-software/v/VESTA.md +++ b/docs/version-specific/supported-software/v/VESTA.md @@ -4,7 +4,7 @@ search: --- # VESTA -VESTA is a 3D visualization program for structured models, volumetric data such as electron/nuclear densities, and crystal morphologies. +VESTA is a 3D visualization program for structured models, volumetric data such as electron/nuclear densities, and crystal morphologies. *homepage*: diff --git a/docs/version-specific/supported-software/v/VMD.md b/docs/version-specific/supported-software/v/VMD.md index f7a02cd71a..67aafed21f 100644 --- a/docs/version-specific/supported-software/v/VMD.md +++ b/docs/version-specific/supported-software/v/VMD.md @@ -6,18 +6,14 @@ search: VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.9.3`` | ``-Python-2.7.14`` | ``foss/2017b`` -``1.9.3`` | ``-Python-2.7.12`` | ``intel/2016b`` -``1.9.3`` | ``-Python-2.7.14`` | ``intel/2018a`` -``1.9.3`` | ``-Python-2.7.15`` | ``intel/2018b`` -``1.9.4a43`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` -``1.9.4a51`` | | ``foss/2020b`` -``1.9.4a51`` | | ``fosscuda/2020b`` -``1.9.4a57`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``1.9.4a51`` | ``foss/2020b`` +``1.9.4a51`` | ``fosscuda/2020b`` +``1.9.4a57`` | ``foss/2022a`` +``1.9.4a57`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/v/VMTK.md b/docs/version-specific/supported-software/v/VMTK.md deleted file mode 100644 index 2725862178..0000000000 --- a/docs/version-specific/supported-software/v/VMTK.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# VMTK - -vmtk is a collection of libraries and tools for 3D reconstruction, geometric analysis, mesh generation and surface data analysis for image-based modeling of blood vessels. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.4.0`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/v/VSCode.md b/docs/version-specific/supported-software/v/VSCode.md index 985b428035..1ccaf3b150 100644 --- a/docs/version-specific/supported-software/v/VSCode.md +++ b/docs/version-specific/supported-software/v/VSCode.md @@ -4,7 +4,7 @@ search: --- # VSCode -Visual Studio Code is a lightweight but powerful source code editor which runs on your desktop and is available for Windows, macOS and Linux. It comes with built-in support for JavaScript, TypeScript and Node.js and has a rich ecosystem of extensions for other languages and runtimes (such as C++, C#, Java, Python, PHP, Go, .NET). Begin your journey with VS Code with these introductory videos. +Visual Studio Code is a lightweight but powerful source code editor which runs on your desktop and is available for Windows, macOS and Linux. It comes with built-in support for JavaScript, TypeScript and Node.js and has a rich ecosystem of extensions for other languages and runtimes (such as C++, C#, Java, Python, PHP, Go, .NET). Begin your journey with VS Code with these introductory videos. *homepage*: diff --git a/docs/version-specific/supported-software/v/VSEARCH.md b/docs/version-specific/supported-software/v/VSEARCH.md index cec911d160..8f63c17ebf 100644 --- a/docs/version-specific/supported-software/v/VSEARCH.md +++ b/docs/version-specific/supported-software/v/VSEARCH.md @@ -10,14 +10,11 @@ VSEARCH supports de novo and reference based chimera detection, clustering, ful version | toolchain --------|---------- -``2.13.4`` | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` -``2.15.0`` | ``GCC/9.3.0`` ``2.18.0`` | ``GCC/10.2.0`` ``2.21.1`` | ``GCC/10.3.0`` ``2.22.1`` | ``GCC/11.3.0`` ``2.25.0`` | ``GCC/12.3.0`` ``2.28.1`` | ``GCC/10.2.0`` -``2.9.1`` | ``foss/2018b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/v/VTK.md b/docs/version-specific/supported-software/v/VTK.md index 69b4953cc1..1ce5bf79f6 100644 --- a/docs/version-specific/supported-software/v/VTK.md +++ b/docs/version-specific/supported-software/v/VTK.md @@ -6,46 +6,21 @@ search: The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``6.3.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``6.3.0`` | ``-Python-2.7.12`` | ``foss/2016b`` -``6.3.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``6.3.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``7.0.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``7.1.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``7.1.1`` | ``-Python-2.7.13`` | ``intel/2017a`` -``8.0.1`` | ``-Python-2.7.14`` | ``foss/2017b`` -``8.0.1`` | ``-Python-2.7.14`` | ``intel/2017b`` -``8.1.0`` | ``-Python-2.7.14`` | ``foss/2018a`` -``8.1.0`` | ``-Python-3.6.4`` | ``foss/2018a`` -``8.1.0`` | ``-Python-2.7.14`` | ``intel/2018a`` -``8.1.0`` | ``-Python-3.6.4`` | ``intel/2018a`` -``8.1.1`` | ``-Python-2.7.15`` | ``foss/2018b`` -``8.1.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``8.1.1`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` -``8.1.1`` | ``-Python-2.7.14`` | ``intel/2018a`` -``8.2.0`` | ``-Python-2.7.15`` | ``foss/2019a`` -``8.2.0`` | ``-Python-3.7.2`` | ``foss/2019a`` -``8.2.0`` | ``-Python-2.7.16`` | ``foss/2019b`` -``8.2.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``8.2.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``8.2.0`` | | ``foss/2021a`` -``8.2.0`` | ``-Python-3.8.2`` | ``fosscuda/2020a`` -``8.2.0`` | ``-Python-3.7.2`` | ``intel/2019a`` -``8.2.0`` | ``-Python-3.8.2`` | ``intel/2020a`` -``9.0.1`` | | ``foss/2020b`` -``9.0.1`` | | ``foss/2021a`` -``9.0.1`` | | ``fosscuda/2020b`` -``9.1.0`` | | ``foss/2021b`` -``9.2.0.rc2`` | | ``foss/2022a`` -``9.2.2`` | | ``foss/2022a`` -``9.2.6`` | | ``foss/2022b`` -``9.2.6`` | | ``foss/2023a`` -``9.3.0`` | | ``foss/2023a`` -``9.3.0`` | | ``foss/2023b`` +version | toolchain +--------|---------- +``8.2.0`` | ``foss/2021a`` +``9.0.1`` | ``foss/2020b`` +``9.0.1`` | ``foss/2021a`` +``9.0.1`` | ``fosscuda/2020b`` +``9.1.0`` | ``foss/2021b`` +``9.2.0.rc2`` | ``foss/2022a`` +``9.2.2`` | ``foss/2022a`` +``9.2.6`` | ``foss/2022b`` +``9.2.6`` | ``foss/2023a`` +``9.3.0`` | ``foss/2023a`` +``9.3.0`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/v/VTune.md b/docs/version-specific/supported-software/v/VTune.md index f64dee85b3..3a3814a7b6 100644 --- a/docs/version-specific/supported-software/v/VTune.md +++ b/docs/version-specific/supported-software/v/VTune.md @@ -6,27 +6,10 @@ search: Intel VTune Amplifier XE is the premier performance profiler for C, C++, C#, Fortran, Assembly and Java. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2013_update10`` | ``system`` -``2013_update11`` | ``system`` -``2013_update12`` | ``system`` -``2013_update6`` | ``system`` -``2013_update8`` | ``system`` -``2013_update9`` | ``system`` -``2016_update3`` | ``system`` -``2017`` | ``system`` -``2017_update1`` | ``system`` -``2017_update2`` | ``system`` -``2017_update3`` | ``system`` -``2018_update1`` | ``system`` -``2018_update2`` | ``system`` -``2018_update3`` | ``system`` -``2019_update2`` | ``system`` -``2019_update3`` | ``system`` -``2019_update5`` | ``system`` ``2020_update3`` | ``system`` ``2021.6.0`` | ``system`` ``2021.9.0`` | ``system`` @@ -34,6 +17,8 @@ version | toolchain ``2022.2.0`` | ``system`` ``2022.3.0`` | ``system`` ``2023.2.0`` | ``system`` +``2024.3.0`` | ``system`` +``2025.0.0`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/v/VXL.md b/docs/version-specific/supported-software/v/VXL.md deleted file mode 100644 index 5461ba2f0b..0000000000 --- a/docs/version-specific/supported-software/v/VXL.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# VXL - -A multi-platform collection of C++ software libraries for Computer Vision and Image Understanding. - -*homepage*: - -version | toolchain ---------|---------- -``1.18.0`` | ``foss/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/v/Valgrind.md b/docs/version-specific/supported-software/v/Valgrind.md index bbb7aee765..e23018a559 100644 --- a/docs/version-specific/supported-software/v/Valgrind.md +++ b/docs/version-specific/supported-software/v/Valgrind.md @@ -6,22 +6,11 @@ search: Valgrind: Debugging and profiling tools -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.11.0`` | ``foss/2016a`` -``3.11.0`` | ``intel/2016a`` -``3.13.0`` | ``foss/2017b`` -``3.13.0`` | ``foss/2018a`` -``3.13.0`` | ``intel/2017a`` -``3.13.0`` | ``intel/2017b`` -``3.13.0`` | ``intel/2018a`` -``3.14.0`` | ``foss/2018b`` -``3.16.1`` | ``gompi/2019b`` -``3.16.1`` | ``gompi/2020a`` ``3.16.1`` | ``gompi/2020b`` -``3.16.1`` | ``iimpi/2020a`` ``3.17.0`` | ``gompi/2021a`` ``3.18.1`` | ``gompi/2021b`` ``3.18.1`` | ``iimpi/2021b`` @@ -30,6 +19,7 @@ version | toolchain ``3.21.0`` | ``gompi/2022b`` ``3.21.0`` | ``gompi/2023a`` ``3.23.0`` | ``gompi/2023b`` +``3.24.0`` | ``gompi/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/v/Vampir.md b/docs/version-specific/supported-software/v/Vampir.md deleted file mode 100644 index 8774877177..0000000000 --- a/docs/version-specific/supported-software/v/Vampir.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Vampir - -The Vampir software tool provides an easy-to-use framework that enables developers to quickly display and analyze arbitrary program behavior at any level of detail. The tool suite implements optimized event analysis algorithms and customizable displays that enable fast and interactive rendering of very complex performance monitoring data. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``8.4.1`` | ``-demo`` | ``system`` -``8.4.1`` | | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/v/VarDict.md b/docs/version-specific/supported-software/v/VarDict.md deleted file mode 100644 index 60fd08f31f..0000000000 --- a/docs/version-specific/supported-software/v/VarDict.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# VarDict - -VarDict is an ultra sensitive variant caller for both single and paired sample variant calling from BAM files. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.5.7`` | ``-Perl-5.28.0`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/v/VarScan.md b/docs/version-specific/supported-software/v/VarScan.md index bfa35c12ef..5a945c7782 100644 --- a/docs/version-specific/supported-software/v/VarScan.md +++ b/docs/version-specific/supported-software/v/VarScan.md @@ -6,12 +6,10 @@ search: Variant calling and somatic mutation/CNV detection for next-generation sequencing data -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2.3.6`` | ``-Java-1.7.0_80`` | ``system`` -``2.4.1`` | ``-Java-1.7.0_80`` | ``system`` ``2.4.4`` | ``-Java-1.8`` | ``system`` ``2.4.4`` | ``-Java-11`` | ``system`` diff --git a/docs/version-specific/supported-software/v/VariantMetaCaller.md b/docs/version-specific/supported-software/v/VariantMetaCaller.md deleted file mode 100644 index fb5180ed4d..0000000000 --- a/docs/version-specific/supported-software/v/VariantMetaCaller.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# VariantMetaCaller - -VariantMetaCaller automatically integrates variant calling pipelines into a better performing overall model that also predicts accurate variant probabilities. - -*homepage*: - -version | toolchain ---------|---------- -``1.0`` | ``intel/2017a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/v/Velvet.md b/docs/version-specific/supported-software/v/Velvet.md index 58a41eb82d..77fb98ca5a 100644 --- a/docs/version-specific/supported-software/v/Velvet.md +++ b/docs/version-specific/supported-software/v/Velvet.md @@ -11,11 +11,8 @@ Sequence assembler for very short reads version | versionsuffix | toolchain --------|---------------|---------- ``1.2.10`` | ``-mt-kmer_191`` | ``GCC/11.2.0`` -``1.2.10`` | ``-mt-kmer_191`` | ``GCC/8.3.0`` -``1.2.10`` | ``-mt-kmer_191`` | ``foss/2018a`` -``1.2.10`` | ``-mt-kmer_191`` | ``foss/2018b`` +``1.2.10`` | ``-mt-kmer_191`` | ``GCC/13.3.0`` ``1.2.10`` | ``-mt-kmer_191`` | ``foss/2023a`` -``1.2.10`` | ``-mt-kmer_37`` | ``intel/2017a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ART.md b/docs/version-specific/supported-software/v/Verkko.md similarity index 72% rename from docs/version-specific/supported-software/a/ART.md rename to docs/version-specific/supported-software/v/Verkko.md index f623f06e79..edc46ae820 100644 --- a/docs/version-specific/supported-software/a/ART.md +++ b/docs/version-specific/supported-software/v/Verkko.md @@ -2,16 +2,15 @@ search: boost: 0.5 --- -# ART +# Verkko -ART is a set of simulation tools to generate synthetic next-generation sequencing reads" +Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2016.06.05`` | ``GCCcore/6.4.0`` -``2016.06.05`` | ``intel/2016b`` +``2.2.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/v/ViennaRNA.md b/docs/version-specific/supported-software/v/ViennaRNA.md index 6e97f49b5c..c3e15c4410 100644 --- a/docs/version-specific/supported-software/v/ViennaRNA.md +++ b/docs/version-specific/supported-software/v/ViennaRNA.md @@ -6,19 +6,12 @@ search: The Vienna RNA Package consists of a C code library and several stand-alone programs for the prediction and comparison of RNA secondary structures. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.2.3`` | | ``intel/2016b`` -``2.3.4`` | | ``foss/2016b`` -``2.3.5`` | | ``intel/2017a`` -``2.4.10`` | ``-Python-2.7.15`` | ``foss/2018b`` -``2.4.10`` | ``-Python-2.7.15`` | ``intel/2018b`` -``2.4.11`` | ``-Python-3.6.6`` | ``foss/2018b`` -``2.4.14`` | ``-Python-3.6.6`` | ``foss/2018b`` -``2.5.0`` | | ``foss/2021b`` -``2.5.1`` | | ``foss/2021b`` +version | toolchain +--------|---------- +``2.5.0`` | ``foss/2021b`` +``2.5.1`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/v/Vim.md b/docs/version-specific/supported-software/v/Vim.md index 08ea82a461..c1df86c2ed 100644 --- a/docs/version-specific/supported-software/v/Vim.md +++ b/docs/version-specific/supported-software/v/Vim.md @@ -4,18 +4,15 @@ search: --- # Vim -Vim is an advanced text editor that seeks to provide the power of the de-facto Unix editor 'Vi', with a more complete feature set. +Vim is an advanced text editor that seeks to provide the power of the de-facto Unix editor 'Vi', with a more complete feature set. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``8.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``8.1.0483`` | ``-Python-2.7.15`` | ``foss/2018b`` -``8.1.1209`` | ``-Python-3.7.2`` | ``GCCcore/8.2.0`` -``9.0.0950`` | | ``GCCcore/11.3.0`` -``9.0.1434`` | | ``GCCcore/12.2.0`` -``9.1.0004`` | | ``GCCcore/12.3.0`` +version | toolchain +--------|---------- +``9.0.0950`` | ``GCCcore/11.3.0`` +``9.0.1434`` | ``GCCcore/12.2.0`` +``9.1.0004`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/v/VirSorter.md b/docs/version-specific/supported-software/v/VirSorter.md index 167f788145..9ea419c80e 100644 --- a/docs/version-specific/supported-software/v/VirSorter.md +++ b/docs/version-specific/supported-software/v/VirSorter.md @@ -8,10 +8,9 @@ VirSorter: mining viral signal from microbial genomic data. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.6`` | | ``foss/2021b`` -``20160601`` | ``-Perl-5.22.1`` | ``foss/2016a`` +version | toolchain +--------|---------- +``1.0.6`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/v/VirtualGL.md b/docs/version-specific/supported-software/v/VirtualGL.md index a272ffd522..76e2eaca24 100644 --- a/docs/version-specific/supported-software/v/VirtualGL.md +++ b/docs/version-specific/supported-software/v/VirtualGL.md @@ -4,14 +4,12 @@ search: --- # VirtualGL -VirtualGL is an open source toolkit that gives any Linux or Unix remote display software the ability to run OpenGL applications with full hardware acceleration. +VirtualGL is an open source toolkit that gives any Linux or Unix remote display software the ability to run OpenGL applications with full hardware acceleration. *homepage*: version | toolchain --------|---------- -``2.6.1`` | ``foss/2018b`` -``2.6.2`` | ``GCCcore/9.3.0`` ``3.0`` | ``GCC/11.2.0`` ``3.1`` | ``GCC/12.3.0`` ``3.1.1`` | ``GCC/13.3.0`` diff --git a/docs/version-specific/supported-software/v/Voro++.md b/docs/version-specific/supported-software/v/Voro++.md index 73bdcacacb..3b064de6be 100644 --- a/docs/version-specific/supported-software/v/Voro++.md +++ b/docs/version-specific/supported-software/v/Voro++.md @@ -16,12 +16,8 @@ version | toolchain ``0.4.6`` | ``GCCcore/11.3.0`` ``0.4.6`` | ``GCCcore/12.2.0`` ``0.4.6`` | ``GCCcore/12.3.0`` -``0.4.6`` | ``GCCcore/6.4.0`` -``0.4.6`` | ``GCCcore/9.3.0`` -``0.4.6`` | ``foss/2016a`` -``0.4.6`` | ``foss/2019b`` -``0.4.6`` | ``intel/2016a`` -``0.4.6`` | ``intel/2019b`` +``0.4.6`` | ``GCCcore/13.2.0`` +``0.4.6`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/v/index.md b/docs/version-specific/supported-software/v/index.md index 4acf8b9510..f1bf773728 100644 --- a/docs/version-specific/supported-software/v/index.md +++ b/docs/version-specific/supported-software/v/index.md @@ -8,34 +8,24 @@ search: - * [V8](V8.md) * [vaeda](vaeda.md) * [Vala](Vala.md) * [Valgrind](Valgrind.md) * [Vamb](Vamb.md) - * [Vampir](Vampir.md) * [Vampire](Vampire.md) * [VAMPIRE-ASM](VAMPIRE-ASM.md) - * [VarDict](VarDict.md) - * [variant_tools](variant_tools.md) - * [VariantMetaCaller](VariantMetaCaller.md) * [VarScan](VarScan.md) - * [vartools](vartools.md) * [VASP](VASP.md) - * [VAtools](VAtools.md) + * [VASPKIT](VASPKIT.md) * [vawk](vawk.md) * [VBZ-Compression](VBZ-Compression.md) - * [VCF-kit](VCF-kit.md) * [vcflib](vcflib.md) - * [vcfnp](vcfnp.md) * [VCFtools](VCFtools.md) * [vConTACT2](vConTACT2.md) - * [VEGAS](VEGAS.md) * [velocyto](velocyto.md) * [Velvet](Velvet.md) * [VEP](VEP.md) - * [verifyBamID](verifyBamID.md) - * [VERSE](VERSE.md) + * [Verkko](Verkko.md) * [versioningit](versioningit.md) * [VESTA](VESTA.md) * [ViennaRNA](ViennaRNA.md) @@ -52,23 +42,18 @@ search: * [VisPy](VisPy.md) * [vitessce-python](vitessce-python.md) * [vitessceR](vitessceR.md) + * [vLLM](vLLM.md) * [VMD](VMD.md) - * [VMTK](VMTK.md) * [voltools](voltools.md) * [vorbis-tools](vorbis-tools.md) * [Voro++](Voro++.md) - * [vsc-base](vsc-base.md) - * [vsc-install](vsc-install.md) + * [vRhyme](vRhyme.md) * [vsc-mympirun](vsc-mympirun.md) - * [vsc-mympirun-scoop](vsc-mympirun-scoop.md) - * [vsc-processcontrol](vsc-processcontrol.md) * [VSCode](VSCode.md) * [VSEARCH](VSEARCH.md) * [vt](vt.md) * [VTK](VTK.md) * [VTune](VTune.md) - * [VV](VV.md) - * [VXL](VXL.md) *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - *v* - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/mkl_fft.md b/docs/version-specific/supported-software/v/vLLM.md similarity index 80% rename from docs/version-specific/supported-software/m/mkl_fft.md rename to docs/version-specific/supported-software/v/vLLM.md index 8a4624e067..f0195fa3e9 100644 --- a/docs/version-specific/supported-software/m/mkl_fft.md +++ b/docs/version-specific/supported-software/v/vLLM.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# mkl_fft +# vLLM -NumPy-based Python interface to Intel(R) MKL FFT functionality +A high-throughput and memory-efficient inference and serving engine for LLMs. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.0.14`` | ``-Python-3.6.6`` | ``intel/2018b`` +``0.4.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/v/vRhyme.md b/docs/version-specific/supported-software/v/vRhyme.md new file mode 100644 index 0000000000..25d1990b1e --- /dev/null +++ b/docs/version-specific/supported-software/v/vRhyme.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# vRhyme + +vRhyme is a multi-functional tool for binning virus genomes from metagenomes. vRhyme functions by utilizing coverage variance comparisons and supervised machine learning classification of sequence features to construct viral metagenome-assembled genomes (vMAGs). + +*homepage*: + +version | toolchain +--------|---------- +``1.1.0`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/v/variant_tools.md b/docs/version-specific/supported-software/v/variant_tools.md deleted file mode 100644 index 7ffefc6c2b..0000000000 --- a/docs/version-specific/supported-software/v/variant_tools.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# variant_tools - -Variant tools is a software tool for the manipulation, annotation, selection, simulation, and analysis of variants in the context of next-gen sequencing analysis. Unlike some other tools used for Next-Gen sequencing analysis, variant tools is project based and provides a whole set of tools to manipulate and analyze genetic variants. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.1.3`` | ``-Python-3.7.4`` | ``foss/2019b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/v/vartools.md b/docs/version-specific/supported-software/v/vartools.md deleted file mode 100644 index 8a6d9b2956..0000000000 --- a/docs/version-specific/supported-software/v/vartools.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# vartools - -Command line utility that provides tools for processing and analyzing astronomical time series data. - -*homepage*: - -version | toolchain ---------|---------- -``1.35`` | ``foss/2016b`` -``1.35`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/v/vcflib.md b/docs/version-specific/supported-software/v/vcflib.md index b565a26211..b51c66f092 100644 --- a/docs/version-specific/supported-software/v/vcflib.md +++ b/docs/version-specific/supported-software/v/vcflib.md @@ -12,7 +12,6 @@ version | versionsuffix | toolchain --------|---------------|---------- ``1.0.2`` | | ``GCC/10.2.0`` ``1.0.2`` | | ``GCC/10.3.0`` -``1.0.2`` | ``-Python-3.8.2`` | ``GCC/9.3.0`` ``1.0.3`` | ``-R-4.1.0`` | ``foss/2021a`` ``1.0.3`` | ``-R-4.1.2`` | ``foss/2021b`` ``1.0.9`` | ``-R-4.2.1`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/v/vcfnp.md b/docs/version-specific/supported-software/v/vcfnp.md deleted file mode 100644 index 2f26ce398c..0000000000 --- a/docs/version-specific/supported-software/v/vcfnp.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# vcfnp - -Load data from a VCF (variant call format) file into numpy arrays, and (optionally) from there into an HDF5 file. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.3.0`` | ``-Python-2.7.11`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/v/velocyto.md b/docs/version-specific/supported-software/v/velocyto.md index 1ecd18e19b..95a7057114 100644 --- a/docs/version-specific/supported-software/v/velocyto.md +++ b/docs/version-specific/supported-software/v/velocyto.md @@ -8,12 +8,11 @@ Velocyto is a library for the analysis of RNA velocity. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.17.17`` | | ``foss/2021a`` -``0.17.17`` | | ``foss/2022a`` -``0.17.17`` | | ``foss/2023a`` -``0.17.17`` | ``-Python-3.8.2`` | ``intel/2020a`` +version | toolchain +--------|---------- +``0.17.17`` | ``foss/2021a`` +``0.17.17`` | ``foss/2022a`` +``0.17.17`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/v/verifyBamID.md b/docs/version-specific/supported-software/v/verifyBamID.md deleted file mode 100644 index ccee7b3cde..0000000000 --- a/docs/version-specific/supported-software/v/verifyBamID.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# verifyBamID - -verifyBamID is a software that verifies whether the reads in particular file match previously known genotypes for an individual (or group of individuals), and checks whether the reads are contaminated as a mixture of two samples. verifyBamID can detect sample contamination and swaps when external genotypes are available. When external genotypes are not available, verifyBamID still robustly detects sample swaps. - -*homepage*: - -version | toolchain ---------|---------- -``1.1.3`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/v/versioningit.md b/docs/version-specific/supported-software/v/versioningit.md index fc8505cee8..ec5f6832ce 100644 --- a/docs/version-specific/supported-software/v/versioningit.md +++ b/docs/version-specific/supported-software/v/versioningit.md @@ -10,6 +10,7 @@ versioningit is yet another Python packaging plugin for automatically determinin version | toolchain --------|---------- +``3.1.2`` | ``GCCcore/13.2.0`` ``3.1.2`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/v/vigra.md b/docs/version-specific/supported-software/v/vigra.md index ab5d4ef6fd..eb5e38cb84 100644 --- a/docs/version-specific/supported-software/v/vigra.md +++ b/docs/version-specific/supported-software/v/vigra.md @@ -4,7 +4,7 @@ search: --- # vigra -Vision with Generic Algorithms is an image processing and analysis library that puts its main emphasis on customizable algorithms and data structures. +Vision with Generic Algorithms is an image processing and analysis library that puts its main emphasis on customizable algorithms and data structures. *homepage*: diff --git a/docs/version-specific/supported-software/v/vsc-base.md b/docs/version-specific/supported-software/v/vsc-base.md deleted file mode 100644 index 7ee698e165..0000000000 --- a/docs/version-specific/supported-software/v/vsc-base.md +++ /dev/null @@ -1,29 +0,0 @@ ---- -search: - boost: 0.5 ---- -# vsc-base - -VSC-tools is a set of Python libraries and scripts that are commonly used within HPC-UGent. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.6.9`` | | ``system`` -``1.7.3`` | | ``system`` -``2.0.4`` | | ``system`` -``2.1.2`` | | ``system`` -``2.4.17`` | ``-Python-2.7.11`` | ``intel/2016a`` -``2.4.2`` | | ``system`` -``2.5.1`` | ``-Python-2.7.11`` | ``intel/2016a`` -``2.5.1`` | ``-Python-2.7.12`` | ``intel/2016b`` -``2.5.1`` | | ``system`` -``2.5.8`` | | ``system`` -``2.8.0`` | | ``system`` -``2.8.1`` | | ``system`` -``2.8.3`` | | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/v/vsc-install.md b/docs/version-specific/supported-software/v/vsc-install.md deleted file mode 100644 index 23a69ba763..0000000000 --- a/docs/version-specific/supported-software/v/vsc-install.md +++ /dev/null @@ -1,25 +0,0 @@ ---- -search: - boost: 0.5 ---- -# vsc-install - -vsc-install provides shared setuptools functions and classes for Python libraries developed by UGent's HPC group - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.11`` | ``-Python-2.7.11`` | ``intel/2016a`` -``0.10.11`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.10.25`` | | ``system`` -``0.10.26`` | | ``system`` -``0.10.6`` | ``-Python-2.7.11`` | ``intel/2016a`` -``0.10.6`` | | ``system`` -``0.11.1`` | | ``system`` -``0.11.2`` | | ``system`` -``0.9.18`` | ``-Python-2.7.11`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/v/vsc-mympirun-scoop.md b/docs/version-specific/supported-software/v/vsc-mympirun-scoop.md deleted file mode 100644 index 681c6fa56c..0000000000 --- a/docs/version-specific/supported-software/v/vsc-mympirun-scoop.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# vsc-mympirun-scoop - -VSC-tools is a set of Python libraries and scripts that are commonly used within HPC-UGent. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.4.1`` | ``-Python-2.7.12`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/v/vsc-mympirun.md b/docs/version-specific/supported-software/v/vsc-mympirun.md index a51e49ca8a..dc3c3c4fff 100644 --- a/docs/version-specific/supported-software/v/vsc-mympirun.md +++ b/docs/version-specific/supported-software/v/vsc-mympirun.md @@ -4,42 +4,26 @@ search: --- # vsc-mympirun -VSC-tools is a set of Python libraries and scripts that are commonly used within HPC-UGent. +mympirun is a tool to make it easier for users of HPC clusters to run MPI programs with good performance. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.2.1`` | | ``system`` -``3.3.0`` | | ``system`` -``3.4.2`` | ``-Python-2.7.11-vsc-base-2.4.17`` | ``intel/2016a`` -``3.4.2`` | ``-Python-2.7.11-vsc-base-2.5.1`` | ``intel/2016a`` -``3.4.2`` | ``-vsc-base-2.4.2`` | ``system`` -``3.4.2`` | | ``system`` -``3.4.3`` | ``-Python-2.7.12`` | ``intel/2016b`` -``4.0.0`` | | ``system`` -``4.0.0b0`` | | ``system`` -``4.0.1`` | | ``system`` -``4.0.2`` | | ``system`` -``4.1.4`` | | ``system`` -``4.1.5`` | | ``system`` -``4.1.6`` | | ``system`` -``4.1.8`` | | ``system`` -``4.1.9`` | | ``system`` -``5.1.0`` | | ``system`` -``5.2.0`` | | ``system`` -``5.2.10`` | | ``system`` -``5.2.11`` | | ``system`` -``5.2.2`` | | ``system`` -``5.2.3`` | | ``system`` -``5.2.4`` | | ``system`` -``5.2.5`` | | ``system`` -``5.2.6`` | | ``system`` -``5.2.7`` | | ``system`` -``5.2.9`` | | ``system`` -``5.3.0`` | | ``system`` -``5.3.1`` | | ``system`` -``5.4.0`` | | ``system`` +version | toolchain +--------|---------- +``5.1.0`` | ``system`` +``5.2.0`` | ``system`` +``5.2.10`` | ``system`` +``5.2.11`` | ``system`` +``5.2.2`` | ``system`` +``5.2.3`` | ``system`` +``5.2.4`` | ``system`` +``5.2.5`` | ``system`` +``5.2.6`` | ``system`` +``5.2.7`` | ``system`` +``5.2.9`` | ``system`` +``5.3.0`` | ``system`` +``5.3.1`` | ``system`` +``5.4.0`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/v/vsc-processcontrol.md b/docs/version-specific/supported-software/v/vsc-processcontrol.md deleted file mode 100644 index 4fad4cea30..0000000000 --- a/docs/version-specific/supported-software/v/vsc-processcontrol.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# vsc-processcontrol - -vsc-processcontrol is a module to abstract process control like scheduler settings and affinity from actual implementations like vsc.affinity and psutil. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0`` | ``-vsc-base-2.1.2`` | ``system`` -``1.0`` | | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/v/vt.md b/docs/version-specific/supported-software/v/vt.md index d8eedc00f2..43c95bb6a8 100644 --- a/docs/version-specific/supported-software/v/vt.md +++ b/docs/version-specific/supported-software/v/vt.md @@ -13,8 +13,6 @@ version | toolchain ``0.57721`` | ``GCC/10.2.0`` ``0.57721`` | ``GCC/10.3.0`` ``0.57721`` | ``GCC/11.2.0`` -``0.57721`` | ``GCC/9.3.0`` -``0.57721`` | ``foss/2018b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/WCSLIB.md b/docs/version-specific/supported-software/w/WCSLIB.md index 1d2967f83f..fdc7399043 100644 --- a/docs/version-specific/supported-software/w/WCSLIB.md +++ b/docs/version-specific/supported-software/w/WCSLIB.md @@ -4,7 +4,7 @@ search: --- # WCSLIB -The FITS "World Coordinate System" (WCS) standard defines keywords and usage that provide for the description of astronomical coordinate systems in a FITS image header. +The FITS "World Coordinate System" (WCS) standard defines keywords and usage that provide for the description of astronomical coordinate systems in a FITS image header. *homepage*: diff --git a/docs/version-specific/supported-software/w/WEKA.md b/docs/version-specific/supported-software/w/WEKA.md index b74e5aa9f6..73b64a95ea 100644 --- a/docs/version-specific/supported-software/w/WEKA.md +++ b/docs/version-specific/supported-software/w/WEKA.md @@ -4,14 +4,13 @@ search: --- # WEKA -Weka is a collection of machine learning algorithms for data mining tasks. The algorithms can either be applied directly to a dataset or called from your own Java code. Weka contains tools for data pre-processing, classification, regression, clustering, association rules, and visualization. It is also well-suited for developing new machine learning schemes. +Weka is a collection of machine learning algorithms for data mining tasks. The algorithms can either be applied directly to a dataset or called from your own Java code. Weka contains tools for data pre-processing, classification, regression, clustering, association rules, and visualization. It is also well-suited for developing new machine learning schemes. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``3.6.12`` | ``-Java-1.7.0_80`` | ``system`` -``3.7.0`` | ``-Java-1.7.0_80`` | ``system`` +``3.8.5`` | ``-Java-11`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/WHAM.md b/docs/version-specific/supported-software/w/WHAM.md deleted file mode 100644 index 1f9aa60774..0000000000 --- a/docs/version-specific/supported-software/w/WHAM.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# WHAM - -An implementation of WHAM: the Weighted Histogram Analysis Method - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0.10.2`` | ``-kj_mol`` | ``intel/2020a`` -``2.0.10.2`` | | ``intel/2020a`` -``2.0.9.1`` | ``-kj_mol`` | ``intel/2019a`` -``2.0.9.1`` | | ``intel/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/w/WIEN2k.md b/docs/version-specific/supported-software/w/WIEN2k.md index 01c9c51a84..1859a1891f 100644 --- a/docs/version-specific/supported-software/w/WIEN2k.md +++ b/docs/version-specific/supported-software/w/WIEN2k.md @@ -10,17 +10,11 @@ The program package WIEN2k allows to perform electronic structure calculations o version | toolchain --------|---------- -``17.1`` | ``foss/2018a`` -``17.1`` | ``gimkl/2017a`` -``17.1`` | ``intel/2018a`` -``18.1`` | ``foss/2018a`` -``18.1`` | ``gimkl/2017a`` -``18.1`` | ``intel/2018a`` -``19.1`` | ``intel/2019a`` ``19.2`` | ``intel/2020b`` ``21.1`` | ``intel/2021a`` ``21.1`` | ``intel/2021b`` ``23.2`` | ``intel/2021b`` +``24.1`` | ``intel/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/WISExome.md b/docs/version-specific/supported-software/w/WISExome.md deleted file mode 100644 index fd77e4dc53..0000000000 --- a/docs/version-specific/supported-software/w/WISExome.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# WISExome - -A within-sample comparison approach to detect copy number variations in whole exome sequencing data - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20180517`` | ``-Python-2.7.14`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/w/WPS.md b/docs/version-specific/supported-software/w/WPS.md index 4131e3e1f2..01dc6c29e2 100644 --- a/docs/version-specific/supported-software/w/WPS.md +++ b/docs/version-specific/supported-software/w/WPS.md @@ -4,20 +4,17 @@ search: --- # WPS -WRF Preprocessing System (WPS) for WRF. The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale numerical weather prediction system designed to serve both operational forecasting and atmospheric research needs. +WRF Preprocessing System (WPS) for WRF. The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale numerical weather prediction system designed to serve both operational forecasting and atmospheric research needs. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``3.8.0`` | ``-dmpar`` | ``intel/2016a`` ``3.9.1`` | ``-dmpar`` | ``foss/2020b`` -``4.0.1`` | ``-dmpar`` | ``intel/2018b`` -``4.0.2`` | ``-dmpar`` | ``foss/2018b`` -``4.1`` | ``-dmpar`` | ``intel/2019b`` ``4.2`` | ``-dmpar`` | ``foss/2020b`` ``4.3.1`` | ``-dmpar`` | ``foss/2021a`` ``4.4`` | ``-dmpar`` | ``foss/2022a`` +``4.6.0`` | ``-dmpar`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/WRF-Fire.md b/docs/version-specific/supported-software/w/WRF-Fire.md deleted file mode 100644 index 7c16c640d7..0000000000 --- a/docs/version-specific/supported-software/w/WRF-Fire.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# WRF-Fire - -WRF-Fire combines the Weather Research and Forecasting model (WRF) with a fire code implementing a surface fire behavior model, called SFIRE, based on semi-empirical formulas calculate the rate of spread of the fire line (the interface between burning and unignited fuel) based on fuel properties, wind velocities from WRF, and terrain slope. The fire spread is implemented by the level set method. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20170221`` | ``-dmpar`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/w/WRF.md b/docs/version-specific/supported-software/w/WRF.md index 0b8aa8341c..ab2ffb5090 100644 --- a/docs/version-specific/supported-software/w/WRF.md +++ b/docs/version-specific/supported-software/w/WRF.md @@ -6,27 +6,18 @@ search: The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale numerical weather prediction system designed to serve both operational forecasting and atmospheric research needs. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``3.8.0`` | ``-dmpar`` | ``intel/2016a`` -``3.8.0`` | ``-dmpar`` | ``intel/2016b`` -``3.9.1.1`` | ``-dmpar`` | ``foss/2020a`` ``3.9.1.1`` | ``-dmpar`` | ``foss/2020b`` -``3.9.1.1`` | ``-dmpar`` | ``intel/2020a`` ``3.9.1.1`` | ``-dmpar`` | ``intel/2020b`` -``4.0.1`` | ``-dmpar`` | ``intel/2018b`` -``4.0.2`` | ``-dmpar`` | ``foss/2018b`` -``4.1.3`` | ``-dmpar`` | ``foss/2019b`` -``4.1.3`` | ``-dmpar`` | ``foss/2020a`` -``4.1.3`` | ``-dm+sm`` | ``intel/2019b`` -``4.1.3`` | ``-dmpar`` | ``intel/2019b`` ``4.2.2`` | ``-dmpar`` | ``foss/2020b`` ``4.3`` | ``-dmpar`` | ``foss/2021a`` ``4.4`` | ``-dmpar`` | ``foss/2022a`` ``4.4.1`` | ``-dmpar`` | ``foss/2022b`` ``4.5.1`` | ``-dmpar`` | ``foss/2023a`` +``4.6.1`` | ``-dmpar`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/WSClean.md b/docs/version-specific/supported-software/w/WSClean.md index 76b8331356..b49cf3e870 100644 --- a/docs/version-specific/supported-software/w/WSClean.md +++ b/docs/version-specific/supported-software/w/WSClean.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``3.4`` | ``foss/2022a`` ``3.4`` | ``foss/2023b`` +``3.5`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/Wannier90.md b/docs/version-specific/supported-software/w/Wannier90.md index e8a55f545c..fb7090f39a 100644 --- a/docs/version-specific/supported-software/w/Wannier90.md +++ b/docs/version-specific/supported-software/w/Wannier90.md @@ -8,31 +8,25 @@ A tool for obtaining maximally-localised Wannier functions *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2`` | | ``intel/2016.02-GCC-4.9`` -``2.0.1`` | | ``intel/2016.02-GCC-4.9`` -``2.0.1`` | | ``intel/2016a`` -``2.0.1.1`` | ``-abinit`` | ``intel/2018b`` -``2.1.0`` | | ``foss/2017b`` -``2.1.0`` | | ``intel/2017a`` -``2.1.0`` | | ``intel/2017b`` -``3.0.0`` | | ``intel/2018b`` -``3.1.0`` | | ``foss/2020b`` -``3.1.0`` | | ``foss/2021a`` -``3.1.0`` | | ``foss/2021b`` -``3.1.0`` | | ``foss/2022a`` -``3.1.0`` | | ``foss/2023a`` -``3.1.0`` | | ``gomkl/2021a`` -``3.1.0`` | | ``gomkl/2022a`` -``3.1.0`` | | ``gomkl/2023a`` -``3.1.0`` | | ``intel/2020a`` -``3.1.0`` | | ``intel/2020b`` -``3.1.0`` | | ``intel/2021a`` -``3.1.0`` | | ``intel/2021b`` -``3.1.0`` | | ``intel/2022a`` -``3.1.0`` | | ``intel/2022b`` -``3.1.0`` | | ``intel/2023a`` +version | toolchain +--------|---------- +``3.1.0`` | ``foss/2020b`` +``3.1.0`` | ``foss/2021a`` +``3.1.0`` | ``foss/2021b`` +``3.1.0`` | ``foss/2022a`` +``3.1.0`` | ``foss/2023a`` +``3.1.0`` | ``foss/2024a`` +``3.1.0`` | ``gomkl/2021a`` +``3.1.0`` | ``gomkl/2022a`` +``3.1.0`` | ``gomkl/2023a`` +``3.1.0`` | ``gomkl/2023b`` +``3.1.0`` | ``intel/2020b`` +``3.1.0`` | ``intel/2021a`` +``3.1.0`` | ``intel/2021b`` +``3.1.0`` | ``intel/2022a`` +``3.1.0`` | ``intel/2022b`` +``3.1.0`` | ``intel/2023a`` +``3.1.0`` | ``intel/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/WannierTools.md b/docs/version-specific/supported-software/w/WannierTools.md index 0f38c222ae..9f6552421e 100644 --- a/docs/version-specific/supported-software/w/WannierTools.md +++ b/docs/version-specific/supported-software/w/WannierTools.md @@ -4,13 +4,12 @@ search: --- # WannierTools -an open-source software package for novel topological materials +WannierTools is an open source software that studies the physical properties of given tight-binding model. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.3.0`` | ``intel/2018a`` ``2.5.1`` | ``intel/2020b`` diff --git a/docs/version-specific/supported-software/w/Waylandpp.md b/docs/version-specific/supported-software/w/Waylandpp.md index 6c14c7ea19..a3ed6e6390 100644 --- a/docs/version-specific/supported-software/w/Waylandpp.md +++ b/docs/version-specific/supported-software/w/Waylandpp.md @@ -4,7 +4,7 @@ search: --- # Waylandpp -Wayland is an object oriented display protocol, which features request and events. Requests can be seen as method calls on certain objects, whereas events can be seen as signals of an object. This makes the Wayland protocol a perfect candidate for a C++ binding. The goal of this library is to create such a C++ binding for Wayland using the most modern C++ technology currently available, providing an easy to use C++ API to Wayland. +Wayland is an object oriented display protocol, which features request and events. Requests can be seen as method calls on certain objects, whereas events can be seen as signals of an object. This makes the Wayland protocol a perfect candidate for a C++ binding. The goal of this library is to create such a C++ binding for Wayland using the most modern C++ technology currently available, providing an easy to use C++ API to Wayland. *homepage*: @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``1.0.0`` | ``GCCcore/11.2.0`` ``1.0.0`` | ``GCCcore/11.3.0`` +``1.0.0`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/WebKitGTK+.md b/docs/version-specific/supported-software/w/WebKitGTK+.md index 5c87978f50..929355c901 100644 --- a/docs/version-specific/supported-software/w/WebKitGTK+.md +++ b/docs/version-specific/supported-software/w/WebKitGTK+.md @@ -10,11 +10,10 @@ WebKitGTK+ is a full-featured port of the WebKit rendering engine, suitable for version | toolchain --------|---------- -``2.24.1`` | ``GCC/8.2.0-2.31.1`` ``2.27.4`` | ``GCC/10.3.0`` -``2.27.4`` | ``GCC/8.3.0`` ``2.37.1`` | ``GCC/11.2.0`` ``2.40.4`` | ``GCC/11.3.0`` +``2.41.4`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/WebSocket++.md b/docs/version-specific/supported-software/w/WebSocket++.md deleted file mode 100644 index 90bf5b7258..0000000000 --- a/docs/version-specific/supported-software/w/WebSocket++.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# WebSocket++ - -WebSocket++ is an open source (BSD license) header only C++ library that implements RFC6455 The WebSocket Protocol. - -*homepage*: - -version | toolchain ---------|---------- -``0.8.1`` | ``gompi/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/AMPL-MP.md b/docs/version-specific/supported-software/w/Wengan.md similarity index 83% rename from docs/version-specific/supported-software/a/AMPL-MP.md rename to docs/version-specific/supported-software/w/Wengan.md index 884b0f9429..a0192d65f1 100644 --- a/docs/version-specific/supported-software/a/AMPL-MP.md +++ b/docs/version-specific/supported-software/w/Wengan.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# AMPL-MP +# Wengan -An open-source library for mathematical programming. +An accurate and ultra-fast genome assembler. -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.1.0`` | ``GCCcore/6.4.0`` +``0.2`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/Whisper.md b/docs/version-specific/supported-software/w/Whisper.md new file mode 100644 index 0000000000..f9e6aa4a70 --- /dev/null +++ b/docs/version-specific/supported-software/w/Whisper.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# Whisper + +Whisper is a general-purpose speech recognition model + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``20231117`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``20240930`` | ``-CUDA-12.1.1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/a/AutoMap.md b/docs/version-specific/supported-software/w/WhisperX.md similarity index 79% rename from docs/version-specific/supported-software/a/AutoMap.md rename to docs/version-specific/supported-software/w/WhisperX.md index 303fdbf483..b8f40b18b6 100644 --- a/docs/version-specific/supported-software/a/AutoMap.md +++ b/docs/version-specific/supported-software/w/WhisperX.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# AutoMap +# WhisperX -Tool to find regions of homozygosity (ROHs) from sequencing data. +Automatic Speech Recognition with Word-level Timestamps (& Diarization). -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.0`` | ``-20200324`` | ``foss/2019b`` +``3.3.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/WildMagic.md b/docs/version-specific/supported-software/w/WildMagic.md index 31c7259bca..fc4fc51669 100644 --- a/docs/version-specific/supported-software/w/WildMagic.md +++ b/docs/version-specific/supported-software/w/WildMagic.md @@ -11,7 +11,6 @@ Wild Magic 5.17 version | toolchain --------|---------- ``5.17`` | ``GCCcore/10.3.0`` -``5.17`` | ``foss/2018b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/Winnowmap.md b/docs/version-specific/supported-software/w/Winnowmap.md index a0ab6f5fe0..d65a3adde1 100644 --- a/docs/version-specific/supported-software/w/Winnowmap.md +++ b/docs/version-specific/supported-software/w/Winnowmap.md @@ -10,7 +10,7 @@ Winnowmap is a long-read mapping algorithm, and a result of our exploration int version | toolchain --------|---------- -``1.0`` | ``GCC/8.3.0`` +``2.03`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/WisecondorX.md b/docs/version-specific/supported-software/w/WisecondorX.md deleted file mode 100644 index 50c0c0293b..0000000000 --- a/docs/version-specific/supported-software/w/WisecondorX.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# WisecondorX - -WisecondorX -- an evolved WISECONDOR - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.6`` | ``-Python-3.8.2`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/w/index.md b/docs/version-specific/supported-software/w/index.md index d905693b4e..37d105f6a7 100644 --- a/docs/version-specific/supported-software/w/index.md +++ b/docs/version-specific/supported-software/w/index.md @@ -16,37 +16,33 @@ search: * [Waylandpp](Waylandpp.md) * [WCSLIB](WCSLIB.md) * [WCT](WCT.md) - * [wcwidth](wcwidth.md) - * [webin-cli](webin-cli.md) * [WebKitGTK+](WebKitGTK+.md) * [weblogo](weblogo.md) - * [WebSocket++](WebSocket++.md) + * [webvtt-py](webvtt-py.md) * [WEKA](WEKA.md) + * [Wengan](Wengan.md) * [WFA2](WFA2.md) * [wfdb](wfdb.md) * [WGDgc](WGDgc.md) * [wget](wget.md) * [wgsim](wgsim.md) - * [WHAM](WHAM.md) * [WhatsHap](WhatsHap.md) - * [wheel](wheel.md) + * [Whisper](Whisper.md) + * [whisper-ctranslate2](whisper-ctranslate2.md) + * [WhisperX](WhisperX.md) * [WIEN2k](WIEN2k.md) * [WildMagic](WildMagic.md) * [Winnowmap](Winnowmap.md) - * [WisecondorX](WisecondorX.md) - * [WISExome](WISExome.md) - * [wkhtmltopdf](wkhtmltopdf.md) * [worker](worker.md) * [wpebackend-fdo](wpebackend-fdo.md) * [WPS](WPS.md) * [wradlib](wradlib.md) * [wrapt](wrapt.md) * [WRF](WRF.md) - * [WRF-Fire](WRF-Fire.md) * [wrf-python](wrf-python.md) * [WSClean](WSClean.md) * [wtdbg2](wtdbg2.md) - * [wxPropertyGrid](wxPropertyGrid.md) + * [wurlitzer](wurlitzer.md) * [wxPython](wxPython.md) * [wxWidgets](wxWidgets.md) diff --git a/docs/version-specific/supported-software/w/waLBerla.md b/docs/version-specific/supported-software/w/waLBerla.md index 438616ffd5..b04c59dc6b 100644 --- a/docs/version-specific/supported-software/w/waLBerla.md +++ b/docs/version-specific/supported-software/w/waLBerla.md @@ -4,14 +4,16 @@ search: --- # waLBerla -Widely applicable Lattics-Boltzmann from Erlangen is a block-structured high-performance framework for multiphysics simulations +Widely applicable Lattics-Boltzmann from Erlangen is a block-structured high-performance framework for multiphysics simulations *homepage*: -version | toolchain ---------|---------- -``6.1`` | ``foss/2021a`` -``6.1`` | ``foss/2022b`` +version | versionsuffix | toolchain +--------|---------------|---------- +``6.1`` | | ``foss/2021a`` +``6.1`` | | ``foss/2022b`` +``6.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``6.1`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/wandb.md b/docs/version-specific/supported-software/w/wandb.md index 473073b285..d1a570b330 100644 --- a/docs/version-specific/supported-software/w/wandb.md +++ b/docs/version-specific/supported-software/w/wandb.md @@ -8,12 +8,11 @@ CLI and Python API for Weights and Biases: a tool for visualizing and tracking y *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.13.4`` | | ``GCCcore/11.3.0`` -``0.13.6`` | | ``GCC/11.3.0`` -``0.16.1`` | | ``GCC/12.3.0`` -``0.8.30`` | ``-Python-3.7.4`` | ``gcccuda/2019b`` +version | toolchain +--------|---------- +``0.13.4`` | ``GCCcore/11.3.0`` +``0.13.6`` | ``GCC/11.3.0`` +``0.16.1`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/wcwidth.md b/docs/version-specific/supported-software/w/wcwidth.md deleted file mode 100644 index 97af7b6c1a..0000000000 --- a/docs/version-specific/supported-software/w/wcwidth.md +++ /dev/null @@ -1,21 +0,0 @@ ---- -search: - boost: 0.5 ---- -# wcwidth - -wcwidth is a low-level Python library to simplify Terminal emulation. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1.7`` | ``-Python-2.7.11`` | ``foss/2016a`` -``0.1.7`` | ``-Python-3.5.1`` | ``foss/2016a`` -``0.1.7`` | ``-Python-2.7.12`` | ``foss/2016b`` -``0.1.7`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.1.7`` | ``-Python-3.5.2`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/w/webin-cli.md b/docs/version-specific/supported-software/w/webin-cli.md deleted file mode 100644 index 13814456c4..0000000000 --- a/docs/version-specific/supported-software/w/webin-cli.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# webin-cli - -The Webin command line submission interface can be used to validate, upload and submit files to the European Nucleotide Archive (ENA) - -*homepage*: - -version | toolchain ---------|---------- -``1.8.9`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/w/webvtt-py.md b/docs/version-specific/supported-software/w/webvtt-py.md new file mode 100644 index 0000000000..f40ed049cd --- /dev/null +++ b/docs/version-specific/supported-software/w/webvtt-py.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# webvtt-py + +webvtt-py is a Python library for reading, writing and converting WebVTT caption files + +*homepage*: + +version | toolchain +--------|---------- +``0.5.1`` | ``GCCcore/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/w/wget.md b/docs/version-specific/supported-software/w/wget.md index 90574b2905..71b07d8e54 100644 --- a/docs/version-specific/supported-software/w/wget.md +++ b/docs/version-specific/supported-software/w/wget.md @@ -6,17 +6,11 @@ search: GNU Wget is a free software package for retrieving files using HTTP, HTTPS and FTP, the most widely-used Internet protocols. It is a non-interactive commandline tool, so it may easily be called from scripts, cron jobs, terminals without X-Windows support, etc. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.17.1`` | ``foss/2016a`` -``1.17.1`` | ``foss/2016b`` -``1.19.4`` | ``GCCcore/6.4.0`` -``1.20.1`` | ``GCCcore/7.3.0`` -``1.20.1`` | ``GCCcore/8.3.0`` ``1.20.3`` | ``GCCcore/10.2.0`` -``1.20.3`` | ``GCCcore/9.3.0`` ``1.21.1`` | ``GCCcore/10.3.0`` ``1.21.2`` | ``GCCcore/11.2.0`` ``1.21.3`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/w/wheel.md b/docs/version-specific/supported-software/w/wheel.md deleted file mode 100644 index f9c28575b6..0000000000 --- a/docs/version-specific/supported-software/w/wheel.md +++ /dev/null @@ -1,35 +0,0 @@ ---- -search: - boost: 0.5 ---- -# wheel - -A built-package format for Python. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.29.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``0.29.0`` | ``-Python-3.5.1`` | ``foss/2016a`` -``0.30.0`` | ``-Python-2.7.14`` | ``foss/2017b`` -``0.30.0`` | ``-Python-3.6.3`` | ``foss/2017b`` -``0.30.0`` | ``-Python-3.6.4`` | ``foss/2018a`` -``0.30.0`` | ``-Python-2.7.14`` | ``fosscuda/2017b`` -``0.30.0`` | ``-Python-3.6.3`` | ``fosscuda/2017b`` -``0.30.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``0.30.0`` | ``-Python-3.6.3`` | ``intel/2017b`` -``0.30.0`` | ``-Python-3.6.4`` | ``intel/2018a`` -``0.30.0`` | ``-Python-2.7.14`` | ``intelcuda/2017b`` -``0.30.0`` | ``-Python-3.6.3`` | ``intelcuda/2017b`` -``0.31.0`` | ``-Python-3.6.4`` | ``foss/2018a`` -``0.31.0`` | ``-Python-2.7.14`` | ``fosscuda/2018a`` -``0.31.0`` | ``-Python-3.6.4`` | ``fosscuda/2018a`` -``0.31.0`` | ``-Python-2.7.14`` | ``intel/2018a`` -``0.31.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.31.1`` | ``-Python-2.7.15`` | ``fosscuda/2018b`` -``0.31.1`` | ``-Python-3.6.6`` | ``fosscuda/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CellMix.md b/docs/version-specific/supported-software/w/whisper-ctranslate2.md similarity index 76% rename from docs/version-specific/supported-software/c/CellMix.md rename to docs/version-specific/supported-software/w/whisper-ctranslate2.md index 0383df4954..f467e85185 100644 --- a/docs/version-specific/supported-software/c/CellMix.md +++ b/docs/version-specific/supported-software/w/whisper-ctranslate2.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# CellMix +# whisper-ctranslate2 -A Comprehensive Toolbox for Gene Expression Deconvolution +Whisper command line client compatible with original OpenAI client based on CTranslate2. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.6.2`` | ``-R-3.5.1`` | ``foss/2018b`` +``0.5.2`` | ``-CUDA-12.6.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/wkhtmltopdf.md b/docs/version-specific/supported-software/w/wkhtmltopdf.md deleted file mode 100644 index b7520ba4cb..0000000000 --- a/docs/version-specific/supported-software/w/wkhtmltopdf.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# wkhtmltopdf - -wkhtmltopdf and wkhtmltoimage are open source (LGPLv3) command line tools to render HTML into PDF and various image formats using the Qt WebKit rendering engine. These run entirely headless and do not require a display or display service. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.12.3`` | ``-Linux-x86_64`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/w/worker.md b/docs/version-specific/supported-software/w/worker.md index 65430e9497..719a11d13f 100644 --- a/docs/version-specific/supported-software/w/worker.md +++ b/docs/version-specific/supported-software/w/worker.md @@ -8,22 +8,12 @@ The Worker framework has been developed to help deal with parameter exploration *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.6.11`` | | ``intel/2019b`` -``1.6.12`` | | ``foss/2019a`` -``1.6.12`` | | ``foss/2021b`` -``1.6.13`` | | ``iimpi/2021b`` -``1.6.13`` | | ``iimpi/2022b`` -``1.6.13`` | | ``iimpi/2023a`` -``1.6.4`` | | ``intel/2016a`` -``1.6.5`` | | ``intel/2016a`` -``1.6.6`` | | ``intel/2016b`` -``1.6.7`` | ``-intel-2016b`` | ``system`` -``1.6.7`` | ``-intel-2017a`` | ``system`` -``1.6.7`` | ``-intel-2017b`` | ``system`` -``1.6.8`` | ``-intel-2018a`` | ``system`` -``1.6.8`` | ``-intel-2018b`` | ``system`` +version | toolchain +--------|---------- +``1.6.12`` | ``foss/2021b`` +``1.6.13`` | ``iimpi/2021b`` +``1.6.13`` | ``iimpi/2022b`` +``1.6.13`` | ``iimpi/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/wpebackend-fdo.md b/docs/version-specific/supported-software/w/wpebackend-fdo.md index e9612986ec..503b9b9479 100644 --- a/docs/version-specific/supported-software/w/wpebackend-fdo.md +++ b/docs/version-specific/supported-software/w/wpebackend-fdo.md @@ -4,7 +4,7 @@ search: --- # wpebackend-fdo -WPE WebKit allows embedders to create simple and performant systems based on Web platform technologies. It is a WebKit port designed with flexibility and hardware acceleration in mind, leveraging common 3D graphics APIs for best performance. +WPE WebKit allows embedders to create simple and performant systems based on Web platform technologies. It is a WebKit port designed with flexibility and hardware acceleration in mind, leveraging common 3D graphics APIs for best performance. *homepage*: @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``1.13.1`` | ``GCCcore/11.2.0`` ``1.14.1`` | ``GCCcore/11.3.0`` +``1.15.90`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/wrapt.md b/docs/version-specific/supported-software/w/wrapt.md index dc6fbde110..1b8e4eb3bc 100644 --- a/docs/version-specific/supported-software/w/wrapt.md +++ b/docs/version-specific/supported-software/w/wrapt.md @@ -14,6 +14,8 @@ version | toolchain ``1.15.0`` | ``gfbf/2022b`` ``1.15.0`` | ``gfbf/2023a`` ``1.15.0`` | ``intel/2022a`` +``1.16.0`` | ``GCCcore/13.2.0`` +``1.16.0`` | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/wrf-python.md b/docs/version-specific/supported-software/w/wrf-python.md index 36b58927c7..c33695c078 100644 --- a/docs/version-specific/supported-software/w/wrf-python.md +++ b/docs/version-specific/supported-software/w/wrf-python.md @@ -8,11 +8,10 @@ A collection of diagnostic and interpolation routines for use with output from *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.0`` | ``-Python-3.6.4`` | ``intel/2018a`` -``1.3.1`` | ``-Python-3.6.6`` | ``intel/2018b`` -``1.3.4.1`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``1.3.4.1-20241111`` | ``foss/2024a`` +``1.3.4.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/wtdbg2.md b/docs/version-specific/supported-software/w/wtdbg2.md index df862f5a57..52c31a6d97 100644 --- a/docs/version-specific/supported-software/w/wtdbg2.md +++ b/docs/version-specific/supported-software/w/wtdbg2.md @@ -4,16 +4,14 @@ search: --- # wtdbg2 -Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output. +Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output. *homepage*: version | toolchain --------|---------- -``2.3`` | ``GCC/7.3.0-2.30`` ``2.5`` | ``GCCcore/11.2.0`` ``2.5`` | ``GCCcore/11.3.0`` -``2.5`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/wurlitzer.md b/docs/version-specific/supported-software/w/wurlitzer.md new file mode 100644 index 0000000000..be8ee4da77 --- /dev/null +++ b/docs/version-specific/supported-software/w/wurlitzer.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# wurlitzer + +Capture C-level output in context managers For more details on why this is needed, please read this blog post: https://eli.thegreenplace.net/2015/redirecting-all-kinds-of-stdout-in-python + +*homepage*: + +version | toolchain +--------|---------- +``3.1.1`` | ``GCCcore/13.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/w/wxPropertyGrid.md b/docs/version-specific/supported-software/w/wxPropertyGrid.md deleted file mode 100644 index dd4a28f357..0000000000 --- a/docs/version-specific/supported-software/w/wxPropertyGrid.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# wxPropertyGrid - -wxPropertyGrid is a property sheet control for wxWidgets. In other words, it is a specialized two-column grid for editing properties such as strings, numbers, flagsets, string arrays, and colours. - -*homepage*: - -version | toolchain ---------|---------- -``1.4.15`` | ``GCC/4.9.2`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/w/wxPython.md b/docs/version-specific/supported-software/w/wxPython.md index d50d7492c7..d185c4c435 100644 --- a/docs/version-specific/supported-software/w/wxPython.md +++ b/docs/version-specific/supported-software/w/wxPython.md @@ -4,24 +4,16 @@ search: --- # wxPython -wxPython is a GUI toolkit for the Python programming language. It allows Python programmers to create programs with a robust, highly functional graphical user interface, simply and easily. It is implemented as a Python extension module (native code) that wraps the popular wxWidgets cross platform GUI library, which is written in C++. +Wraps the wxWidgets C++ toolkit and provides access to the user interface portions of the wxWidgets API, enabling Python applications to have a native GUI on Windows, Macs or Unix systems, with a native look and feel and requiring very little (if any) platform specific code. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0.2.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``3.0.2.0`` | ``-Python-2.7.15`` | ``foss/2018b`` -``3.0.2.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``3.0.2.0`` | ``-Python-2.7.12`` | ``intel/2016b`` -``3.0.2.0`` | ``-Python-2.7.13`` | ``intel/2017a`` -``3.0.2.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``4.0.4`` | ``-Python-2.7.15`` | ``GCC/8.2.0-2.31.1`` -``4.0.4`` | ``-Python-3.7.2`` | ``GCC/8.2.0-2.31.1`` -``4.0.7.post2`` | ``-Python-3.7.4`` | ``GCC/8.3.0`` -``4.1.1`` | | ``foss/2021a`` -``4.2.0`` | | ``foss/2021b`` -``4.2.1`` | | ``foss/2022a`` +version | toolchain +--------|---------- +``4.1.1`` | ``foss/2021a`` +``4.2.0`` | ``foss/2021b`` +``4.2.1`` | ``foss/2022a`` +``4.2.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/wxWidgets.md b/docs/version-specific/supported-software/w/wxWidgets.md index 24905ddbfc..92b3c926d9 100644 --- a/docs/version-specific/supported-software/w/wxWidgets.md +++ b/docs/version-specific/supported-software/w/wxWidgets.md @@ -4,15 +4,12 @@ search: --- # wxWidgets -wxWidgets is a C++ library that lets developers create applications for Windows, Mac OS X, Linux and other platforms with a single code base. It has popular language bindings for Python, Perl, Ruby and many other languages, and unlike other cross-platform toolkits, wxWidgets gives applications a truly native look and feel because it uses the platform's native API rather than emulating the GUI. +wxWidgets is a C++ library that lets developers create applications for Windows, Mac OS X, Linux and other platforms with a single code base. It has popular language bindings for Python, Perl, Ruby and many other languages, and unlike other cross-platform toolkits, wxWidgets gives applications a truly native look and feel because it uses the platform's native API rather than emulating the GUI. *homepage*: version | toolchain --------|---------- -``3.0.3`` | ``foss/2018a`` -``3.0.4`` | ``GCC/8.2.0-2.31.1`` -``3.1.3`` | ``GCC/8.3.0`` ``3.1.4`` | ``GCC/10.2.0`` ``3.1.5`` | ``GCC/10.3.0`` ``3.1.5`` | ``GCC/11.2.0`` @@ -20,6 +17,8 @@ version | toolchain ``3.2.1`` | ``GCC/11.3.0`` ``3.2.2.1`` | ``GCC/12.2.0`` ``3.2.2.1`` | ``GCC/12.3.0`` +``3.2.6`` | ``GCC/13.2.0`` +``3.2.6`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/X11.md b/docs/version-specific/supported-software/x/X11.md index eab2caa328..45308d429f 100644 --- a/docs/version-specific/supported-software/x/X11.md +++ b/docs/version-specific/supported-software/x/X11.md @@ -10,18 +10,6 @@ The X Window System (X11) is a windowing system for bitmap displays version | toolchain --------|---------- -``20160819`` | ``GCCcore/5.4.0`` -``20160819`` | ``foss/2016b`` -``20160819`` | ``intel/2016b`` -``20170129`` | ``GCCcore/6.3.0`` -``20170129`` | ``gimkl/2017a`` -``20170314`` | ``GCCcore/6.3.0`` -``20171023`` | ``GCCcore/6.4.0`` -``20180131`` | ``GCCcore/6.4.0`` -``20180604`` | ``GCCcore/7.3.0`` -``20190311`` | ``GCCcore/8.2.0`` -``20190717`` | ``GCCcore/8.3.0`` -``20200222`` | ``GCCcore/9.3.0`` ``20201008`` | ``GCCcore/10.2.0`` ``20210518`` | ``GCCcore/10.3.0`` ``20210802`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/x/XALT.md b/docs/version-specific/supported-software/x/XALT.md deleted file mode 100644 index 397567cb81..0000000000 --- a/docs/version-specific/supported-software/x/XALT.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# XALT - -XALT 2 is a tool to allow a site to track user executables and library usage on a cluster. When installed it can tell a site what are the top executables by Node-Hours or by the number of users or the number of times it is run. XALT 2 also tracks library usage as well. XALT 2 can also track package use by R, MATLAB or Python. It tracks both MPI and non-MPI programs. - -*homepage*: - -version | toolchain ---------|---------- -``2.8.4`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/x/XBeach.md b/docs/version-specific/supported-software/x/XBeach.md index 8722c48a6f..217e378a56 100644 --- a/docs/version-specific/supported-software/x/XBeach.md +++ b/docs/version-specific/supported-software/x/XBeach.md @@ -4,7 +4,7 @@ search: --- # XBeach -XBeach is a two-dimensional model for wave propagation, long waves and mean flow, sediment transport and morphological changes of the nearshore area, beaches, dunes and backbarrier during storms. +XBeach is a two-dimensional model for wave propagation, long waves and mean flow, sediment transport and morphological changes of the nearshore area, beaches, dunes and backbarrier during storms. *homepage*: diff --git a/docs/version-specific/supported-software/x/XCFun.md b/docs/version-specific/supported-software/x/XCFun.md index d4dae59363..812cc5b005 100644 --- a/docs/version-specific/supported-software/x/XCFun.md +++ b/docs/version-specific/supported-software/x/XCFun.md @@ -8,15 +8,13 @@ Arbitrary order exchange-correlation functional library *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1.0`` | | ``GCCcore/9.3.0`` -``2.1.1`` | | ``GCCcore/10.2.0`` -``2.1.1`` | | ``GCCcore/10.3.0`` -``2.1.1`` | | ``GCCcore/11.3.0`` -``2.1.1`` | | ``GCCcore/12.2.0`` -``20180122`` | ``-Python-2.7.14`` | ``intel/2017b`` -``20190127`` | ``-Python-3.7.2`` | ``foss/2019a`` +version | toolchain +--------|---------- +``2.1.1`` | ``GCCcore/10.2.0`` +``2.1.1`` | ``GCCcore/10.3.0`` +``2.1.1`` | ``GCCcore/11.3.0`` +``2.1.1`` | ``GCCcore/12.2.0`` +``2.1.1`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/XCrySDen.md b/docs/version-specific/supported-software/x/XCrySDen.md index f363da3b41..6a8d9da1f8 100644 --- a/docs/version-specific/supported-software/x/XCrySDen.md +++ b/docs/version-specific/supported-software/x/XCrySDen.md @@ -10,11 +10,9 @@ XCrySDen is a crystalline and molecular structure visualisation program aiming version | toolchain --------|---------- -``1.5.60`` | ``intel/2019a`` -``1.6.2`` | ``foss/2019b`` ``1.6.2`` | ``foss/2020b`` ``1.6.2`` | ``foss/2022a`` -``1.6.2`` | ``intel/2019b`` +``1.6.2`` | ``foss/2024a`` ``1.6.2`` | ``intel/2021b`` ``1.6.2`` | ``intel/2022a`` diff --git a/docs/version-specific/supported-software/x/XGBoost.md b/docs/version-specific/supported-software/x/XGBoost.md index f916bea7fd..2b86c2a149 100644 --- a/docs/version-specific/supported-software/x/XGBoost.md +++ b/docs/version-specific/supported-software/x/XGBoost.md @@ -10,19 +10,15 @@ XGBoost is an optimized distributed gradient boosting library designed to be hig version | versionsuffix | toolchain --------|---------------|---------- -``0.6a2`` | ``-Python-2.7.12`` | ``intel/2016b`` -``0.6a2`` | ``-Python-3.5.2`` | ``intel/2016b`` -``0.6a2`` | ``-Python-3.6.1`` | ``intel/2017a`` -``0.72.1`` | ``-Python-2.7.14`` | ``intel/2017b`` -``0.90`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.2.0`` | ``-Python-3.8.2`` | ``foss/2020a`` ``1.5.0`` | | ``foss/2021a`` ``1.7.1`` | | ``foss/2022a`` ``1.7.2`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``1.7.2`` | | ``foss/2022a`` +``1.7.2`` | | ``foss/2022b`` ``2.0.2`` | | ``gfbf/2023a`` ``2.1.1`` | | ``gfbf/2023b`` -``20171120`` | ``-Java-1.8.0_152`` | ``intel/2017b`` +``2.1.3`` | ``-CUDA-12.1.1`` | ``gfbf/2023a`` +``2.1.3`` | | ``gfbf/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/XGrafix.md b/docs/version-specific/supported-software/x/XGrafix.md deleted file mode 100644 index 1e2e50e6a7..0000000000 --- a/docs/version-specific/supported-software/x/XGrafix.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# XGrafix - -A graphics library and controller for physics simulation programs. 3-d surface plots, scatter plots, 2-d line plots. - -*homepage*: - -version | toolchain ---------|---------- -``2.41`` | ``GCCcore/9.3.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/x/XKeyboardConfig.md b/docs/version-specific/supported-software/x/XKeyboardConfig.md deleted file mode 100644 index 7bb6d8afd6..0000000000 --- a/docs/version-specific/supported-software/x/XKeyboardConfig.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# XKeyboardConfig - -The non-arch keyboard configuration database for X Window. The goal is to provide the consistent, well-structured, frequently released open source of X keyboard configuration data for X Window System implementations (free, open source and commercial). The project is targeted to XKB-based systems. - -*homepage*: - -version | toolchain ---------|---------- -``2.17`` | ``foss/2016a`` -``2.17`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/x/XMDS2.md b/docs/version-specific/supported-software/x/XMDS2.md deleted file mode 100644 index ce59997a14..0000000000 --- a/docs/version-specific/supported-software/x/XMDS2.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# XMDS2 - -The purpose of XMDS2 is to simplify the process of creating simulations that solve systems of initial-value first-order partial and ordinary differential equations. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.2.3`` | ``-Python-2.7.15`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/x/XML-Compile.md b/docs/version-specific/supported-software/x/XML-Compile.md index ed828a6b5b..23fee88228 100644 --- a/docs/version-specific/supported-software/x/XML-Compile.md +++ b/docs/version-specific/supported-software/x/XML-Compile.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``1.63`` | ``GCCcore/11.2.0`` ``1.63`` | ``GCCcore/12.2.0`` +``1.63`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/XML-LibXML.md b/docs/version-specific/supported-software/x/XML-LibXML.md index be897a6aa7..7b7e7257fd 100644 --- a/docs/version-specific/supported-software/x/XML-LibXML.md +++ b/docs/version-specific/supported-software/x/XML-LibXML.md @@ -6,27 +6,18 @@ search: Perl binding for libxml2 -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0132`` | ``-Perl-5.26.1`` | ``GCCcore/6.4.0`` -``2.0132`` | ``-Perl-5.28.0`` | ``GCCcore/7.3.0`` -``2.0132`` | ``-Perl-5.24.0`` | ``foss/2016b`` -``2.0132`` | ``-Perl-5.26.0`` | ``foss/2017b`` -``2.0132`` | ``-Perl-5.24.0`` | ``intel/2016b`` -``2.0132`` | ``-Perl-5.24.1`` | ``intel/2017a`` -``2.0132`` | ``-Perl-5.26.0`` | ``intel/2017b`` -``2.0200`` | ``-Perl-5.28.1`` | ``GCCcore/8.2.0`` -``2.0201`` | | ``GCCcore/8.3.0`` -``2.0205`` | | ``GCCcore/9.3.0`` -``2.0206`` | | ``GCCcore/10.2.0`` -``2.0207`` | | ``GCCcore/10.3.0`` -``2.0207`` | | ``GCCcore/11.2.0`` -``2.0207`` | | ``GCCcore/11.3.0`` -``2.0208`` | | ``GCCcore/12.2.0`` -``2.0209`` | | ``GCCcore/12.3.0`` -``2.0210`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``2.0206`` | ``GCCcore/10.2.0`` +``2.0207`` | ``GCCcore/10.3.0`` +``2.0207`` | ``GCCcore/11.2.0`` +``2.0207`` | ``GCCcore/11.3.0`` +``2.0208`` | ``GCCcore/12.2.0`` +``2.0209`` | ``GCCcore/12.3.0`` +``2.0210`` | ``GCCcore/13.2.0`` +``2.0210`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/XML-Parser.md b/docs/version-specific/supported-software/x/XML-Parser.md index 9d198077f3..fca4c48e6a 100644 --- a/docs/version-specific/supported-software/x/XML-Parser.md +++ b/docs/version-specific/supported-software/x/XML-Parser.md @@ -6,26 +6,14 @@ search: This is a Perl extension interface to James Clark's XML parser, expat. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2.41`` | ``-Perl-5.20.3`` | ``intel/2016a`` -``2.44`` | ``-Perl-5.22.1`` | ``foss/2016a`` -``2.44`` | ``-Perl-5.22.1`` | ``intel/2016a`` -``2.44_01`` | ``-Perl-5.24.0`` | ``GCCcore/4.9.3`` -``2.44_01`` | ``-Perl-5.24.0`` | ``GCCcore/5.4.0`` -``2.44_01`` | ``-Perl-5.24.1`` | ``GCCcore/6.3.0`` -``2.44_01`` | ``-Perl-5.26.0`` | ``GCCcore/6.4.0`` -``2.44_01`` | ``-Perl-5.26.1`` | ``GCCcore/6.4.0`` -``2.44_01`` | ``-Perl-5.28.0`` | ``GCCcore/7.3.0`` -``2.44_01`` | ``-Perl-5.24.0`` | ``foss/2016b`` -``2.44_01`` | ``-Perl-5.24.0`` | ``gimkl/2017a`` -``2.44_01`` | ``-Perl-5.24.0`` | ``intel/2016b`` -``2.44_01`` | ``-Perl-5.24.1`` | ``intel/2017a`` ``2.46`` | ``-Perl-5.32.1`` | ``GCCcore/10.3.0`` ``2.46`` | ``-Perl-5.34.1`` | ``GCCcore/11.3.0`` ``2.46`` | ``-Perl-5.36.1`` | ``GCCcore/12.3.0`` +``2.47`` | ``-Perl-5.38.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/XMLSec.md b/docs/version-specific/supported-software/x/XMLSec.md deleted file mode 100644 index 96d93819c8..0000000000 --- a/docs/version-specific/supported-software/x/XMLSec.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# XMLSec - -XML Security Library is a C library based on LibXML2, supporting major XML security standards. - -*homepage*: - -version | toolchain ---------|---------- -``1.2.26`` | ``GCCcore/6.4.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/x/XMLStarlet.md b/docs/version-specific/supported-software/x/XMLStarlet.md deleted file mode 100644 index ab7a2edb81..0000000000 --- a/docs/version-specific/supported-software/x/XMLStarlet.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# XMLStarlet - -Command line XML tool - -*homepage*: - -version | toolchain ---------|---------- -``1.6.1`` | ``GCCcore/6.4.0`` -``1.6.1`` | ``foss/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/x/XOOPIC.md b/docs/version-specific/supported-software/x/XOOPIC.md deleted file mode 100644 index 29f0bd1e5b..0000000000 --- a/docs/version-specific/supported-software/x/XOOPIC.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# XOOPIC - -XOOPIC is a two-dimensional 3-velocity particle-in-cell simulator. It can handle electrostatic and electromagnetic models, has a large variety of boundary conditions, supports multiple gasses and gas chemistry, and is easily reconfigurable via an input file. - -*homepage*: - -version | toolchain ---------|---------- -``20210302`` | ``foss/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/x/XSD.md b/docs/version-specific/supported-software/x/XSD.md deleted file mode 100644 index 627eb5d334..0000000000 --- a/docs/version-specific/supported-software/x/XSD.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# XSD - -CodeSynthesis XSD is an open-source, cross-platform W3C XML Schema to C++ data binding compiler. - -*homepage*: - -version | toolchain ---------|---------- -``4.0.0`` | ``GCCcore/8.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/x/XTandem.md b/docs/version-specific/supported-software/x/XTandem.md deleted file mode 100644 index eb0c635fe3..0000000000 --- a/docs/version-specific/supported-software/x/XTandem.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# XTandem - -X!Tandem open source is software that can match tandem mass spectra with peptide sequences, in a process that has come to be known as protein identification. - -*homepage*: - -version | toolchain ---------|---------- -``17.02.01.4`` | ``GCC/6.4.0-2.28`` -``17.02.01.4`` | ``iccifort/2017.4.196-GCC-6.4.0-2.28`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/x/XZ.md b/docs/version-specific/supported-software/x/XZ.md index fb5eeb6c46..59ea81057b 100644 --- a/docs/version-specific/supported-software/x/XZ.md +++ b/docs/version-specific/supported-software/x/XZ.md @@ -6,42 +6,20 @@ search: xz: XZ utilities -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``5.0.5`` | | ``GCC/4.8.2`` -``5.2.0`` | | ``GCC/4.9.2`` -``5.2.2`` | | ``GCC/4.9.2`` -``5.2.2`` | | ``GCC/5.4.0-2.26`` -``5.2.2`` | | ``GCCcore/4.9.3`` -``5.2.2`` | | ``GCCcore/5.4.0`` -``5.2.2`` | | ``foss/2016.04`` -``5.2.2`` | ``-gettext-0.19.7`` | ``foss/2016a`` -``5.2.2`` | | ``foss/2016a`` -``5.2.2`` | | ``foss/2016b`` -``5.2.2`` | ``-gettext-0.19.7`` | ``intel/2016a`` -``5.2.2`` | | ``intel/2016a`` -``5.2.2`` | | ``intel/2016b`` -``5.2.3`` | | ``GCCcore/6.3.0`` -``5.2.3`` | | ``GCCcore/6.4.0`` -``5.2.3`` | | ``gimkl/2017a`` -``5.2.4`` | | ``GCCcore/7.2.0`` -``5.2.4`` | | ``GCCcore/7.3.0`` -``5.2.4`` | | ``GCCcore/8.2.0`` -``5.2.4`` | | ``GCCcore/8.3.0`` -``5.2.4`` | | ``GCCcore/9.2.0`` -``5.2.5`` | | ``GCCcore/10.1.0`` -``5.2.5`` | | ``GCCcore/10.2.0`` -``5.2.5`` | | ``GCCcore/10.3.0`` -``5.2.5`` | | ``GCCcore/11.2.0`` -``5.2.5`` | | ``GCCcore/11.3.0`` -``5.2.5`` | | ``GCCcore/9.3.0`` -``5.2.7`` | | ``GCCcore/12.2.0`` -``5.4.2`` | | ``GCCcore/12.3.0`` -``5.4.2`` | | ``GCCcore/13.1.0`` -``5.4.4`` | | ``GCCcore/13.2.0`` -``5.4.5`` | | ``GCCcore/13.3.0`` +version | toolchain +--------|---------- +``5.2.5`` | ``GCCcore/10.2.0`` +``5.2.5`` | ``GCCcore/10.3.0`` +``5.2.5`` | ``GCCcore/11.2.0`` +``5.2.5`` | ``GCCcore/11.3.0`` +``5.2.7`` | ``GCCcore/12.2.0`` +``5.4.2`` | ``GCCcore/12.3.0`` +``5.4.2`` | ``GCCcore/13.1.0`` +``5.4.4`` | ``GCCcore/13.2.0`` +``5.4.5`` | ``GCCcore/13.3.0`` +``5.6.3`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/Xerces-C++.md b/docs/version-specific/supported-software/x/Xerces-C++.md index d6d08dace8..06e50f66aa 100644 --- a/docs/version-specific/supported-software/x/Xerces-C++.md +++ b/docs/version-specific/supported-software/x/Xerces-C++.md @@ -4,24 +4,20 @@ search: --- # Xerces-C++ -Xerces-C++ is a validating XML parser written in a portable subset of C++. Xerces-C++ makes it easy to give your application the ability to read and write XML data. A shared library is provided for parsing, generating, manipulating, and validating XML documents using the DOM, SAX, and SAX2 APIs. +Xerces-C++ is a validating XML parser written in a portable subset of C++. Xerces-C++ makes it easy to give your application the ability to read and write XML data. A shared library is provided for parsing, generating, manipulating, and validating XML documents using the DOM, SAX, and SAX2 APIs. -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.1.4`` | ``GCCcore/6.4.0`` -``3.2.0`` | ``GCCcore/7.3.0`` -``3.2.2`` | ``GCCcore/8.2.0`` -``3.2.2`` | ``GCCcore/8.3.0`` ``3.2.3`` | ``GCCcore/10.2.0`` ``3.2.3`` | ``GCCcore/10.3.0`` ``3.2.3`` | ``GCCcore/11.2.0`` -``3.2.3`` | ``GCCcore/9.3.0`` ``3.2.4`` | ``GCCcore/11.3.0`` ``3.2.4`` | ``GCCcore/12.2.0`` ``3.2.4`` | ``GCCcore/12.3.0`` ``3.2.5`` | ``GCCcore/13.2.0`` +``3.2.5`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/XlsxWriter.md b/docs/version-specific/supported-software/x/XlsxWriter.md index 5b3ed75b91..561b4ff302 100644 --- a/docs/version-specific/supported-software/x/XlsxWriter.md +++ b/docs/version-specific/supported-software/x/XlsxWriter.md @@ -17,6 +17,7 @@ version | toolchain ``3.1.2`` | ``GCCcore/12.2.0`` ``3.1.3`` | ``GCCcore/12.3.0`` ``3.1.9`` | ``GCCcore/13.2.0`` +``3.2.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/Xmipp.md b/docs/version-specific/supported-software/x/Xmipp.md index 6136373e17..064bd6cc6a 100644 --- a/docs/version-specific/supported-software/x/Xmipp.md +++ b/docs/version-specific/supported-software/x/Xmipp.md @@ -10,8 +10,6 @@ Scipion is an image processing framework to obtain 3D models of macromolecular c version | versionsuffix | toolchain --------|---------------|---------- -``3.19.04-Apollo`` | ``-Python-2.7.15`` | ``foss/2019a`` -``3.19.04-Apollo`` | ``-Python-2.7.15`` | ``fosscuda/2019a`` ``3.22.07-Helios`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``3.22.07-Helios`` | | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/x/Xvfb.md b/docs/version-specific/supported-software/x/Xvfb.md index 8233f8e0f5..50aa1f8630 100644 --- a/docs/version-specific/supported-software/x/Xvfb.md +++ b/docs/version-specific/supported-software/x/Xvfb.md @@ -12,10 +12,8 @@ version | toolchain --------|---------- ``1.20.11`` | ``GCCcore/10.3.0`` ``1.20.13`` | ``GCCcore/11.2.0`` -``1.20.8`` | ``GCCcore/8.2.0`` -``1.20.8`` | ``GCCcore/8.3.0`` ``1.20.9`` | ``GCCcore/10.2.0`` -``1.20.9`` | ``GCCcore/9.3.0`` +``21.1.14`` | ``GCCcore/13.3.0`` ``21.1.3`` | ``GCCcore/11.3.0`` ``21.1.6`` | ``GCCcore/12.2.0`` ``21.1.8`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/x/index.md b/docs/version-specific/supported-software/x/index.md index 9f46a02e23..6aa2cadf81 100644 --- a/docs/version-specific/supported-software/x/index.md +++ b/docs/version-specific/supported-software/x/index.md @@ -12,49 +12,29 @@ search: * [x13as](x13as.md) * [x264](x264.md) * [x265](x265.md) - * [XALT](XALT.md) * [xarray](xarray.md) * [XBeach](XBeach.md) - * [xbitmaps](xbitmaps.md) - * [xcb-proto](xcb-proto.md) - * [xcb-util](xcb-util.md) - * [xcb-util-image](xcb-util-image.md) - * [xcb-util-keysyms](xcb-util-keysyms.md) - * [xcb-util-renderutil](xcb-util-renderutil.md) - * [xcb-util-wm](xcb-util-wm.md) - * [xCell](xCell.md) * [XCFun](XCFun.md) * [xclip](xclip.md) * [XCrySDen](XCrySDen.md) * [xdotool](xdotool.md) * [Xerces-C++](Xerces-C++.md) * [xESMF](xESMF.md) - * [xextproto](xextproto.md) - * [xf86vidmodeproto](xf86vidmodeproto.md) + * [xformers](xformers.md) * [XGBoost](XGBoost.md) - * [XGrafix](XGrafix.md) - * [xineramaproto](xineramaproto.md) - * [XKeyboardConfig](XKeyboardConfig.md) * [XlsxWriter](XlsxWriter.md) - * [XMDS2](XMDS2.md) * [Xmipp](Xmipp.md) * [xmitgcm](xmitgcm.md) * [XML-Compile](XML-Compile.md) * [XML-LibXML](XML-LibXML.md) * [XML-Parser](XML-Parser.md) * [xmlf90](xmlf90.md) - * [XMLSec](XMLSec.md) - * [XMLStarlet](XMLStarlet.md) - * [xonsh](xonsh.md) - * [XOOPIC](XOOPIC.md) * [xorg-macros](xorg-macros.md) * [xpdf](xpdf.md) * [XPLOR-NIH](XPLOR-NIH.md) * [xprop](xprop.md) * [xproto](xproto.md) - * [XSD](XSD.md) * [xskillscore](xskillscore.md) - * [XTandem](XTandem.md) * [xtb](xtb.md) * [xtb-IFF](xtb-IFF.md) * [xtensor](xtensor.md) diff --git a/docs/version-specific/supported-software/x/x13as.md b/docs/version-specific/supported-software/x/x13as.md index 930467e663..06e67e9ba2 100644 --- a/docs/version-specific/supported-software/x/x13as.md +++ b/docs/version-specific/supported-software/x/x13as.md @@ -4,7 +4,7 @@ search: --- # x13as -X-13ARIMA-SEATS is seasonal adjustment software produced, distributed, and maintained by the Census Bureau. Features of X-13ARIMA-SEATS include: - Extensive time series modeling and model selection capabilities for linear regression models with ARIMA errors (regARIMA models); - The capability to generate ARIMA model-based seasonal adjustment using a version of the SEATS software originally developed by Victor Gómez and Agustín Maravall at the Bank of Spain, as well as nonparametric adjustments from the X-11 procedure; - Diagnostics of the quality and stability of the adjustments achieved under the options selected; - The ability to efficiently process many series at once. +X-13ARIMA-SEATS is seasonal adjustment software produced, distributed, and maintained by the Census Bureau. Features of X-13ARIMA-SEATS include: - Extensive time series modeling and model selection capabilities for linear regression models with ARIMA errors (regARIMA models); - The capability to generate ARIMA model-based seasonal adjustment using a version of the SEATS software originally developed by Victor Gómez and Agustín Maravall at the Bank of Spain, as well as nonparametric adjustments from the X-11 procedure; - Diagnostics of the quality and stability of the adjustments achieved under the options selected; - The ability to efficiently process many series at once. *homepage*: diff --git a/docs/version-specific/supported-software/x/x264.md b/docs/version-specific/supported-software/x/x264.md index 0ffe3865f8..77e879bf5f 100644 --- a/docs/version-specific/supported-software/x/x264.md +++ b/docs/version-specific/supported-software/x/x264.md @@ -4,29 +4,12 @@ search: --- # x264 -x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL. +x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL. -*homepage*: +*homepage*: version | toolchain --------|---------- -``20160114`` | ``gimkl/2.11.5`` -``20160114`` | ``intel/2016a`` -``20160430`` | ``foss/2016a`` -``20160430`` | ``intel/2016a`` -``20160614`` | ``foss/2016b`` -``20160614`` | ``intel/2016b`` -``20170406`` | ``gimkl/2017a`` -``20170721`` | ``GCCcore/6.4.0`` -``20170913`` | ``intel/2017a`` -``20171217`` | ``foss/2017b`` -``20171217`` | ``intel/2017b`` -``20180128`` | ``GCCcore/6.4.0`` -``20180325`` | ``GCCcore/6.4.0`` -``20181203`` | ``GCCcore/7.3.0`` -``20190413`` | ``GCCcore/8.2.0`` -``20190925`` | ``GCCcore/8.3.0`` -``20191217`` | ``GCCcore/9.3.0`` ``20201026`` | ``GCCcore/10.2.0`` ``20210414`` | ``GCCcore/10.3.0`` ``20210613`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/x/x265.md b/docs/version-specific/supported-software/x/x265.md index cc4ad5b908..59e861e331 100644 --- a/docs/version-specific/supported-software/x/x265.md +++ b/docs/version-specific/supported-software/x/x265.md @@ -4,22 +4,13 @@ search: --- # x265 -x265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL. +x265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.4`` | ``foss/2016b`` -``2.5`` | ``intel/2017a`` -``2.6`` | ``GCCcore/6.4.0`` -``2.6`` | ``intel/2017b`` -``2.7`` | ``GCCcore/6.4.0`` -``2.9`` | ``GCCcore/7.3.0`` -``3.0`` | ``GCCcore/8.2.0`` -``3.2`` | ``GCCcore/8.3.0`` ``3.3`` | ``GCCcore/10.2.0`` -``3.3`` | ``GCCcore/9.3.0`` ``3.5`` | ``GCCcore/10.3.0`` ``3.5`` | ``GCCcore/11.2.0`` ``3.5`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/x/xCell.md b/docs/version-specific/supported-software/x/xCell.md deleted file mode 100644 index d6873d1809..0000000000 --- a/docs/version-specific/supported-software/x/xCell.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# xCell - -xCell is a gene signatures-based method learned from thousands of pure cell types from various sources. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.12`` | ``-R-3.5.1`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/x/xESMF.md b/docs/version-specific/supported-software/x/xESMF.md index 355fdd220a..47feea6b15 100644 --- a/docs/version-specific/supported-software/x/xESMF.md +++ b/docs/version-specific/supported-software/x/xESMF.md @@ -8,10 +8,10 @@ xESMF: Universal Regridder for Geospatial Data *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.3.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``0.3.0`` | | ``intel/2020b`` +version | toolchain +--------|---------- +``0.3.0`` | ``intel/2020b`` +``0.8.6`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/xarray.md b/docs/version-specific/supported-software/x/xarray.md index 439ae6e6e0..3c4c3866c9 100644 --- a/docs/version-specific/supported-software/x/xarray.md +++ b/docs/version-specific/supported-software/x/xarray.md @@ -8,35 +8,21 @@ xarray (formerly xray) is an open source project and Python package that aims to *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.0`` | ``-Python-2.7.14`` | ``intel/2017b`` -``0.10.0`` | ``-Python-3.6.3`` | ``intel/2017b`` -``0.10.3`` | ``-Python-3.6.4`` | ``intel/2018a`` -``0.10.4`` | ``-Python-3.6.4`` | ``intel/2018a`` -``0.10.8`` | ``-Python-3.6.4`` | ``intel/2018a`` -``0.12.1`` | ``-Python-3.6.6`` | ``foss/2018b`` -``0.12.1`` | ``-Python-3.6.6`` | ``intel/2018b`` -``0.13.0`` | ``-Python-3.7.2`` | ``intel/2019a`` -``0.15.1`` | ``-Python-3.7.4`` | ``foss/2019b`` -``0.15.1`` | ``-Python-3.7.4`` | ``intel/2019b`` -``0.16.1`` | ``-Python-3.8.2`` | ``foss/2020a`` -``0.16.1`` | ``-Python-3.8.2`` | ``intel/2020a`` -``0.16.2`` | | ``foss/2020b`` -``0.16.2`` | | ``fosscuda/2020b`` -``0.16.2`` | | ``intel/2020b`` -``0.19.0`` | | ``foss/2021a`` -``0.20.1`` | | ``foss/2021b`` -``0.20.1`` | | ``intel/2021b`` -``0.9.5`` | ``-Python-2.7.13`` | ``intel/2017a`` -``0.9.5`` | ``-Python-3.6.1`` | ``intel/2017a`` -``0.9.6`` | ``-Python-2.7.13`` | ``intel/2017a`` -``2022.6.0`` | | ``foss/2022a`` -``2022.6.0`` | | ``intel/2022a`` -``2022.9.0`` | | ``foss/2022a`` -``2023.4.2`` | | ``gfbf/2022b`` -``2023.9.0`` | | ``gfbf/2023a`` -``2024.5.0`` | | ``gfbf/2023b`` +version | toolchain +--------|---------- +``0.16.2`` | ``foss/2020b`` +``0.16.2`` | ``fosscuda/2020b`` +``0.16.2`` | ``intel/2020b`` +``0.19.0`` | ``foss/2021a`` +``0.20.1`` | ``foss/2021b`` +``0.20.1`` | ``intel/2021b`` +``2022.6.0`` | ``foss/2022a`` +``2022.6.0`` | ``intel/2022a`` +``2022.9.0`` | ``foss/2022a`` +``2023.4.2`` | ``gfbf/2022b`` +``2023.9.0`` | ``gfbf/2023a`` +``2024.11.0`` | ``gfbf/2024a`` +``2024.5.0`` | ``gfbf/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/xbitmaps.md b/docs/version-specific/supported-software/x/xbitmaps.md deleted file mode 100644 index c0e1a7bf0c..0000000000 --- a/docs/version-specific/supported-software/x/xbitmaps.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# xbitmaps - -provides bitmaps for x - -*homepage*: - -version | toolchain ---------|---------- -``1.1.1`` | ``foss/2016a`` -``1.1.1`` | ``intel/2016a`` -``1.1.1`` | ``system`` -``1.1.2`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/x/xcb-proto.md b/docs/version-specific/supported-software/x/xcb-proto.md deleted file mode 100644 index 2268f83511..0000000000 --- a/docs/version-specific/supported-software/x/xcb-proto.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# xcb-proto - -The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility. - -*homepage*: - -version | toolchain ---------|---------- -``1.11`` | ``system`` -``1.13`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/x/xcb-util-image.md b/docs/version-specific/supported-software/x/xcb-util-image.md deleted file mode 100644 index c5be4270fc..0000000000 --- a/docs/version-specific/supported-software/x/xcb-util-image.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# xcb-util-image - -The xcb-util-image package provides additional extensions to the XCB library. - -*homepage*: - -version | toolchain ---------|---------- -``0.4.0`` | ``foss/2016a`` -``0.4.0`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/x/xcb-util-keysyms.md b/docs/version-specific/supported-software/x/xcb-util-keysyms.md deleted file mode 100644 index a89ac0db99..0000000000 --- a/docs/version-specific/supported-software/x/xcb-util-keysyms.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# xcb-util-keysyms - -The xcb-util-keysyms package contains a library for handling standard X key constants and conversion to/from keycodes. - -*homepage*: - -version | toolchain ---------|---------- -``0.4.0`` | ``foss/2016a`` -``0.4.0`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/x/xcb-util-renderutil.md b/docs/version-specific/supported-software/x/xcb-util-renderutil.md deleted file mode 100644 index 20e9c86826..0000000000 --- a/docs/version-specific/supported-software/x/xcb-util-renderutil.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# xcb-util-renderutil - -The xcb-util-renderutil package provides additional extensions to the XCB library. - -*homepage*: - -version | toolchain ---------|---------- -``0.3.9`` | ``foss/2016a`` -``0.3.9`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/x/xcb-util-wm.md b/docs/version-specific/supported-software/x/xcb-util-wm.md deleted file mode 100644 index 940b092c83..0000000000 --- a/docs/version-specific/supported-software/x/xcb-util-wm.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# xcb-util-wm - -The xcb-util-wm package contains libraries which provide client and window-manager helpers for EWMH and ICCCM. - -*homepage*: - -version | toolchain ---------|---------- -``0.4.1`` | ``foss/2016a`` -``0.4.1`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/x/xcb-util.md b/docs/version-specific/supported-software/x/xcb-util.md deleted file mode 100644 index 5d49fa3dc0..0000000000 --- a/docs/version-specific/supported-software/x/xcb-util.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# xcb-util - -The xcb-util package provides additional extensions to the XCB library, many that were previously found in Xlib, but are not part of core X protocol - -*homepage*: - -version | toolchain ---------|---------- -``0.4.0`` | ``foss/2016a`` -``0.4.0`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/x/xextproto.md b/docs/version-specific/supported-software/x/xextproto.md deleted file mode 100644 index 58729229c0..0000000000 --- a/docs/version-specific/supported-software/x/xextproto.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -search: - boost: 0.5 ---- -# xextproto - -XExtProto protocol headers. - -*homepage*: - -version | toolchain ---------|---------- -``7.3.0`` | ``foss/2016a`` -``7.3.0`` | ``gimkl/2.11.5`` -``7.3.0`` | ``intel/2016a`` -``7.3.0`` | ``intel/2017b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/x/xf86vidmodeproto.md b/docs/version-specific/supported-software/x/xf86vidmodeproto.md deleted file mode 100644 index 9e60ad4e8e..0000000000 --- a/docs/version-specific/supported-software/x/xf86vidmodeproto.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# xf86vidmodeproto - -X11 XFree86 video mode extension protocol headers. - -*homepage*: - -version | toolchain ---------|---------- -``2.3.1`` | ``foss/2016a`` -``2.3.1`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/a/Alpha.md b/docs/version-specific/supported-software/x/xformers.md similarity index 77% rename from docs/version-specific/supported-software/a/Alpha.md rename to docs/version-specific/supported-software/x/xformers.md index 73db1b32c6..6814fed2d4 100644 --- a/docs/version-specific/supported-software/a/Alpha.md +++ b/docs/version-specific/supported-software/x/xformers.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# Alpha +# xformers -Alpha is a tool designed for detailed comparative study of bacteriophage genomes. +Flexible Transformers, defined by interoperable and optimized building blocks. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``20200430`` | ``-Python-2.7.16`` | ``foss/2019b`` +``0.0.23.post1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/xineramaproto.md b/docs/version-specific/supported-software/x/xineramaproto.md deleted file mode 100644 index 21517b7a6a..0000000000 --- a/docs/version-specific/supported-software/x/xineramaproto.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# xineramaproto - -X protocol and ancillary headers for xinerama - -*homepage*: - -version | toolchain ---------|---------- -``1.2.1`` | ``foss/2016a`` -``1.2.1`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/x/xmitgcm.md b/docs/version-specific/supported-software/x/xmitgcm.md index 9314b44d6b..3c9b3c4dba 100644 --- a/docs/version-specific/supported-software/x/xmitgcm.md +++ b/docs/version-specific/supported-software/x/xmitgcm.md @@ -4,7 +4,7 @@ search: --- # xmitgcm -xmitgcm is a python package for reading MITgcm binary MDS files into xarray data structures. By storing data in dask arrays, xmitgcm enables parallel, out-of-core analysis of MITgcm output data. +xmitgcm is a python package for reading MITgcm binary MDS files into xarray data structures. By storing data in dask arrays, xmitgcm enables parallel, out-of-core analysis of MITgcm output data. *homepage*: diff --git a/docs/version-specific/supported-software/x/xmlf90.md b/docs/version-specific/supported-software/x/xmlf90.md index 05541a7200..d4e81bfe8f 100644 --- a/docs/version-specific/supported-software/x/xmlf90.md +++ b/docs/version-specific/supported-software/x/xmlf90.md @@ -10,16 +10,14 @@ xmlf90 is a basic XML parsing library written in Fortran. version | toolchain --------|---------- -``1.5.3`` | ``foss/2016b`` -``1.5.3`` | ``foss/2017a`` ``1.5.4`` | ``GCC/10.2.0`` ``1.5.4`` | ``GCC/10.3.0`` ``1.5.4`` | ``GCC/11.2.0`` -``1.5.4`` | ``iccifort/2019.5.281`` ``1.5.4`` | ``iccifort/2020.4.304`` ``1.5.4`` | ``intel-compilers/2021.2.0`` ``1.5.4`` | ``intel-compilers/2021.4.0`` ``1.5.6`` | ``GCC/11.3.0`` +``1.6.3`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/xonsh.md b/docs/version-specific/supported-software/x/xonsh.md deleted file mode 100644 index c5b1ac1992..0000000000 --- a/docs/version-specific/supported-software/x/xonsh.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# xonsh - -Xonsh is a Python-ish, BASHwards-looking shell language and command prompt. - -*homepage*: - -version | toolchain ---------|---------- -``0.3.2`` | ``intel/2016a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/x/xorg-macros.md b/docs/version-specific/supported-software/x/xorg-macros.md index 57858bb782..f1f4a3fdce 100644 --- a/docs/version-specific/supported-software/x/xorg-macros.md +++ b/docs/version-specific/supported-software/x/xorg-macros.md @@ -10,20 +10,7 @@ X.org macros utilities. version | toolchain --------|---------- -``1.19.0`` | ``foss/2016a`` -``1.19.0`` | ``foss/2016b`` -``1.19.0`` | ``gimkl/2.11.5`` -``1.19.0`` | ``intel/2016a`` -``1.19.0`` | ``intel/2016b`` -``1.19.1`` | ``GCCcore/6.3.0`` -``1.19.1`` | ``GCCcore/6.4.0`` ``1.19.2`` | ``GCCcore/10.2.0`` -``1.19.2`` | ``GCCcore/7.2.0`` -``1.19.2`` | ``GCCcore/7.3.0`` -``1.19.2`` | ``GCCcore/8.2.0`` -``1.19.2`` | ``GCCcore/8.3.0`` -``1.19.2`` | ``GCCcore/9.2.0`` -``1.19.2`` | ``GCCcore/9.3.0`` ``1.19.3`` | ``GCCcore/10.3.0`` ``1.19.3`` | ``GCCcore/11.2.0`` ``1.19.3`` | ``GCCcore/11.3.0`` @@ -31,6 +18,7 @@ version | toolchain ``1.20.0`` | ``GCCcore/12.3.0`` ``1.20.0`` | ``GCCcore/13.2.0`` ``1.20.1`` | ``GCCcore/13.3.0`` +``1.20.2`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/xpdf.md b/docs/version-specific/supported-software/x/xpdf.md index a5e9be4d95..c5a35c2006 100644 --- a/docs/version-specific/supported-software/x/xpdf.md +++ b/docs/version-specific/supported-software/x/xpdf.md @@ -4,7 +4,7 @@ search: --- # xpdf -Xpdf was first released in 1995. It was written, and is still developed, by Derek Noonburg. Xpdf is a free PDF viewer and toolkit, including a text extractor, image converter, HTML converter, and more. Most of the tools are available as open source. +Xpdf was first released in 1995. It was written, and is still developed, by Derek Noonburg. Xpdf is a free PDF viewer and toolkit, including a text extractor, image converter, HTML converter, and more. Most of the tools are available as open source. *homepage*: diff --git a/docs/version-specific/supported-software/x/xprop.md b/docs/version-specific/supported-software/x/xprop.md index a41b0614f5..ce789d2701 100644 --- a/docs/version-specific/supported-software/x/xprop.md +++ b/docs/version-specific/supported-software/x/xprop.md @@ -6,29 +6,18 @@ search: The xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.2`` | | ``GCCcore/5.4.0`` -``1.2.2`` | ``-X11-20180131`` | ``GCCcore/6.4.0`` -``1.2.2`` | | ``GCCcore/6.4.0`` -``1.2.2`` | | ``foss/2016a`` -``1.2.2`` | | ``foss/2016b`` -``1.2.2`` | | ``intel/2016a`` -``1.2.2`` | | ``intel/2016b`` -``1.2.2`` | | ``intel/2017a`` -``1.2.3`` | | ``GCCcore/7.3.0`` -``1.2.4`` | | ``GCCcore/8.2.0`` -``1.2.4`` | | ``GCCcore/8.3.0`` -``1.2.4`` | | ``GCCcore/9.3.0`` -``1.2.5`` | | ``GCCcore/10.2.0`` -``1.2.5`` | | ``GCCcore/10.3.0`` -``1.2.5`` | | ``GCCcore/11.2.0`` -``1.2.5`` | | ``GCCcore/11.3.0`` -``1.2.5`` | | ``GCCcore/12.2.0`` -``1.2.6`` | | ``GCCcore/12.3.0`` -``1.2.7`` | | ``GCCcore/13.2.0`` +version | toolchain +--------|---------- +``1.2.5`` | ``GCCcore/10.2.0`` +``1.2.5`` | ``GCCcore/10.3.0`` +``1.2.5`` | ``GCCcore/11.2.0`` +``1.2.5`` | ``GCCcore/11.3.0`` +``1.2.5`` | ``GCCcore/12.2.0`` +``1.2.6`` | ``GCCcore/12.3.0`` +``1.2.7`` | ``GCCcore/13.2.0`` +``1.2.8`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/xproto.md b/docs/version-specific/supported-software/x/xproto.md index 37705593d2..ce4520a3ff 100644 --- a/docs/version-specific/supported-software/x/xproto.md +++ b/docs/version-specific/supported-software/x/xproto.md @@ -6,25 +6,17 @@ search: X protocol and ancillary headers -*homepage*: +*homepage*: version | toolchain --------|---------- -``7.0.28`` | ``foss/2016a`` -``7.0.28`` | ``gimkl/2.11.5`` -``7.0.28`` | ``intel/2016a`` -``7.0.29`` | ``intel/2016a`` ``7.0.31`` | ``GCCcore/10.2.0`` ``7.0.31`` | ``GCCcore/10.3.0`` ``7.0.31`` | ``GCCcore/11.2.0`` ``7.0.31`` | ``GCCcore/11.3.0`` ``7.0.31`` | ``GCCcore/12.3.0`` ``7.0.31`` | ``GCCcore/13.2.0`` -``7.0.31`` | ``GCCcore/6.3.0`` -``7.0.31`` | ``GCCcore/6.4.0`` -``7.0.31`` | ``GCCcore/7.3.0`` -``7.0.31`` | ``GCCcore/8.3.0`` -``7.0.31`` | ``GCCcore/9.3.0`` +``7.0.31`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/xtb.md b/docs/version-specific/supported-software/x/xtb.md index 1a62d845e3..59039ae93d 100644 --- a/docs/version-specific/supported-software/x/xtb.md +++ b/docs/version-specific/supported-software/x/xtb.md @@ -6,22 +6,20 @@ search: xtb - An extended tight-binding semi-empirical program package. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``6.2.2-hotfix`` | ``-Python-3.6.3`` | ``intel/2017b`` -``6.2.3`` | | ``foss/2019b`` -``6.4.1`` | | ``foss/2021b`` -``6.4.1`` | | ``intel/2021a`` -``6.5.0`` | | ``foss/2021b`` -``6.5.1`` | | ``foss/2022a`` -``6.6.0`` | | ``foss/2022a`` -``6.6.0`` | | ``intel/2022a`` -``6.6.1`` | | ``gfbf/2022b`` -``6.6.1`` | | ``gfbf/2023a`` -``6.7.0`` | | ``gfbf/2023a`` -``6.7.1`` | | ``gfbf/2023b`` +version | toolchain +--------|---------- +``6.4.1`` | ``foss/2021b`` +``6.4.1`` | ``intel/2021a`` +``6.5.0`` | ``foss/2021b`` +``6.5.1`` | ``foss/2022a`` +``6.6.0`` | ``foss/2022a`` +``6.6.0`` | ``intel/2022a`` +``6.6.1`` | ``gfbf/2022b`` +``6.6.1`` | ``gfbf/2023a`` +``6.7.0`` | ``gfbf/2023a`` +``6.7.1`` | ``gfbf/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/xtrans.md b/docs/version-specific/supported-software/x/xtrans.md index c82e3887e1..defd5cb17c 100644 --- a/docs/version-specific/supported-software/x/xtrans.md +++ b/docs/version-specific/supported-software/x/xtrans.md @@ -11,9 +11,6 @@ xtrans includes a number of routines to make X implementations transport-indepen version | toolchain --------|---------- ``1.3.5`` | ``GCCcore/11.3.0`` -``1.3.5`` | ``foss/2016a`` -``1.3.5`` | ``gimkl/2.11.5`` -``1.3.5`` | ``intel/2016a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/y/YACS.md b/docs/version-specific/supported-software/y/YACS.md index 259e679176..90b44f773e 100644 --- a/docs/version-specific/supported-software/y/YACS.md +++ b/docs/version-specific/supported-software/y/YACS.md @@ -16,7 +16,6 @@ version | toolchain ``0.1.8`` | ``GCCcore/11.3.0`` ``0.1.8`` | ``GCCcore/12.3.0`` ``0.1.8`` | ``GCCcore/13.3.0`` -``0.1.8`` | ``GCCcore/8.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/y/YANK.md b/docs/version-specific/supported-software/y/YANK.md deleted file mode 100644 index d1d764d2f9..0000000000 --- a/docs/version-specific/supported-software/y/YANK.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# YANK - -A GPU-accelerated Python framework for exploring algorithms for alchemical free energy calculations - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.25.2`` | ``-Python-3.8.2`` | ``intel/2020a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/y/YAPS.md b/docs/version-specific/supported-software/y/YAPS.md deleted file mode 100644 index 14beb321e5..0000000000 --- a/docs/version-specific/supported-software/y/YAPS.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# YAPS - -YAPS - Yet Another Positioning Solver - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.0`` | ``-R-3.5.1`` | ``foss/2018b`` -``1.1.0`` | ``-R-3.6.0`` | ``intel/2019a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/y/YAXT.md b/docs/version-specific/supported-software/y/YAXT.md index 31869c156d..20e3992983 100644 --- a/docs/version-specific/supported-software/y/YAXT.md +++ b/docs/version-specific/supported-software/y/YAXT.md @@ -11,15 +11,6 @@ Yet Another eXchange Tool version | toolchain --------|---------- ``0.10.0`` | ``gompi/2022b`` -``0.5.1`` | ``intel/2016b`` -``0.5.1`` | ``intel/2017a`` -``0.5.1`` | ``intel/2017b`` -``0.6.0`` | ``intel/2018a`` -``0.6.0`` | ``intel/2018b`` -``0.6.0`` | ``iomkl/2018b`` -``0.6.2`` | ``foss/2018b`` -``0.6.2`` | ``gompi/2019b`` -``0.6.2`` | ``iimpi/2019b`` ``0.9.0`` | ``gompi/2020b`` ``0.9.1`` | ``gompi/2021a`` ``0.9.2`` | ``iimpi/2021b`` diff --git a/docs/version-specific/supported-software/l/Log-Log4perl.md b/docs/version-specific/supported-software/y/YaHS.md similarity index 85% rename from docs/version-specific/supported-software/l/Log-Log4perl.md rename to docs/version-specific/supported-software/y/YaHS.md index f7e0580f46..e2ed0a4810 100644 --- a/docs/version-specific/supported-software/l/Log-Log4perl.md +++ b/docs/version-specific/supported-software/y/YaHS.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# Log-Log4perl +# YaHS -Log4perl +Yet another Hi-C scaffolding tool -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.47`` | ``foss/2016a`` +``1.2.2`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/y/Yade.md b/docs/version-specific/supported-software/y/Yade.md deleted file mode 100644 index 894826641f..0000000000 --- a/docs/version-specific/supported-software/y/Yade.md +++ /dev/null @@ -1,22 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Yade - -Yade is an extensible open-source framework for discrete numerical models, focused on Discrete Element Method. The computation parts are written in c++ using flexible object model, allowing independent implementation of new alogrithms and interfaces. Python is used for rapid and concise scene construction, simulation control, postprocessing and debugging. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.20.0`` | ``-Python-2.7.11`` | ``foss/2016a`` -``1.20.0`` | ``-Python-2.7.11`` | ``intel/2016a`` -``2016.06a`` | ``-Python-2.7.12`` | ``foss/2016b`` -``2016.06a`` | ``-Python-2.7.12`` | ``intel/2016b`` -``2017.01a`` | ``-Python-2.7.12`` | ``intel/2016b`` -``2018.02b`` | ``-Python-2.7.14`` | ``intel/2018a`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/y/Yambo.md b/docs/version-specific/supported-software/y/Yambo.md index 1e14a7d719..83c5867981 100644 --- a/docs/version-specific/supported-software/y/Yambo.md +++ b/docs/version-specific/supported-software/y/Yambo.md @@ -10,7 +10,6 @@ Yambo is a FORTRAN/C code for Many-Body calculations in solid state and molecula version | toolchain --------|---------- -``3.4.2`` | ``intel/2016.02-GCC-4.9`` ``5.0.4`` | ``intel/2021a`` ``5.1.2`` | ``intel/2021b`` diff --git a/docs/version-specific/supported-software/y/Yasm.md b/docs/version-specific/supported-software/y/Yasm.md index 48d853a4e4..04fdabdde7 100644 --- a/docs/version-specific/supported-software/y/Yasm.md +++ b/docs/version-specific/supported-software/y/Yasm.md @@ -18,19 +18,6 @@ version | toolchain ``1.3.0`` | ``GCCcore/12.3.0`` ``1.3.0`` | ``GCCcore/13.2.0`` ``1.3.0`` | ``GCCcore/13.3.0`` -``1.3.0`` | ``GCCcore/6.4.0`` -``1.3.0`` | ``GCCcore/7.3.0`` -``1.3.0`` | ``GCCcore/8.2.0`` -``1.3.0`` | ``GCCcore/8.3.0`` -``1.3.0`` | ``GCCcore/9.3.0`` -``1.3.0`` | ``foss/2016a`` -``1.3.0`` | ``foss/2016b`` -``1.3.0`` | ``foss/2017a`` -``1.3.0`` | ``gimkl/2.11.5`` -``1.3.0`` | ``gimkl/2017a`` -``1.3.0`` | ``intel/2016a`` -``1.3.0`` | ``intel/2016b`` -``1.3.0`` | ``intel/2017a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/y/index.md b/docs/version-specific/supported-software/y/index.md index acbb3c4c46..27023637b1 100644 --- a/docs/version-specific/supported-software/y/index.md +++ b/docs/version-specific/supported-software/y/index.md @@ -9,12 +9,10 @@ search: * [YACS](YACS.md) - * [Yade](Yade.md) * [yaff](yaff.md) + * [YaHS](YaHS.md) * [Yambo](Yambo.md) * [yaml-cpp](yaml-cpp.md) - * [YANK](YANK.md) - * [YAPS](YAPS.md) * [Yasm](Yasm.md) * [YAXT](YAXT.md) * [yell](yell.md) diff --git a/docs/version-specific/supported-software/y/yaff.md b/docs/version-specific/supported-software/y/yaff.md index 786bc7c427..faa6d4a1c2 100644 --- a/docs/version-specific/supported-software/y/yaff.md +++ b/docs/version-specific/supported-software/y/yaff.md @@ -6,27 +6,12 @@ search: Yaff stands for 'Yet another force field'. It is a pythonic force-field code. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.develop.2.15`` | ``-Python-2.7.12-HDF5-1.8.18`` | ``intel/2016b`` -``1.1.2`` | ``-Python-2.7.13`` | ``intel/2017a`` -``1.1.3`` | ``-Python-2.7.13`` | ``intel/2017a`` -``1.4.2`` | ``-Python-2.7.14`` | ``foss/2018a`` -``1.4.2`` | ``-Python-2.7.14`` | ``intel/2017b`` -``1.4.2`` | ``-Python-3.6.3`` | ``intel/2017b`` -``1.4.2`` | ``-Python-2.7.14`` | ``intel/2018a`` -``1.4.5`` | ``-Python-2.7.15`` | ``intel/2018b`` -``1.5.0`` | ``-Python-2.7.15`` | ``intel/2018b`` -``1.5.0`` | ``-Python-3.7.2`` | ``intel/2019a`` -``1.6.0`` | ``-Python-3.7.4`` | ``foss/2019b`` -``1.6.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``1.6.0`` | | ``foss/2020b`` -``1.6.0`` | | ``foss/2023a`` -``1.6.0`` | ``-Python-3.7.2`` | ``intel/2019a`` -``1.6.0`` | ``-Python-3.7.4`` | ``intel/2019b`` -``1.6.0`` | ``-Python-3.8.2`` | ``intel/2020a`` +version | toolchain +--------|---------- +``1.6.0`` | ``foss/2020b`` +``1.6.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/y/yaml-cpp.md b/docs/version-specific/supported-software/y/yaml-cpp.md index 95a835c8fa..c787454af3 100644 --- a/docs/version-specific/supported-software/y/yaml-cpp.md +++ b/docs/version-specific/supported-software/y/yaml-cpp.md @@ -10,11 +10,11 @@ yaml-cpp is a YAML parser and emitter in C++ matching the YAML 1.2 spec version | toolchain --------|---------- -``0.6.3`` | ``GCCcore/8.3.0`` ``0.7.0`` | ``GCCcore/11.3.0`` ``0.7.0`` | ``GCCcore/12.2.0`` ``0.7.0`` | ``GCCcore/12.3.0`` ``0.8.0`` | ``GCCcore/13.2.0`` +``0.8.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/y/yt.md b/docs/version-specific/supported-software/y/yt.md index 4be848d2bb..25cb28ec4b 100644 --- a/docs/version-specific/supported-software/y/yt.md +++ b/docs/version-specific/supported-software/y/yt.md @@ -4,7 +4,7 @@ search: --- # yt -yt is an open-source, permissively-licensed python package for analyzing and visualizing volumetric data. +yt is an open-source, permissively-licensed python package for analyzing and visualizing volumetric data. *homepage*: diff --git a/docs/version-specific/supported-software/z/Z3.md b/docs/version-specific/supported-software/z/Z3.md index 83e06d998c..d277dfe121 100644 --- a/docs/version-specific/supported-software/z/Z3.md +++ b/docs/version-specific/supported-software/z/Z3.md @@ -17,6 +17,7 @@ version | versionsuffix | toolchain ``4.12.2`` | | ``GCCcore/12.3.0`` ``4.13.0`` | | ``GCCcore/13.2.0`` ``4.13.0`` | | ``GCCcore/13.3.0`` +``4.13.4`` | | ``GCCcore/14.2.0`` ``4.8.10`` | ``-Python-3.8.6`` | ``GCCcore/10.2.0`` ``4.8.10`` | | ``GCCcore/10.2.0`` ``4.8.11`` | ``-Python-3.9.5`` | ``GCCcore/10.3.0`` @@ -25,8 +26,6 @@ version | versionsuffix | toolchain ``4.8.12`` | | ``GCCcore/11.2.0`` ``4.8.16`` | ``-Python-3.10.4`` | ``GCCcore/11.3.0`` ``4.8.16`` | | ``GCCcore/11.3.0`` -``4.8.9`` | | ``GCCcore/8.3.0`` -``4.8.9`` | | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/z/ZPAQ.md b/docs/version-specific/supported-software/z/ZPAQ.md deleted file mode 100644 index 2a51076a5a..0000000000 --- a/docs/version-specific/supported-software/z/ZPAQ.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ZPAQ - -zpaq is a free and open source (GPL v3) incremental, journaling command-line archiver for Windows, Linux and Mac OS/X - -*homepage*: - -version | toolchain ---------|---------- -``7.00`` | ``GCC/4.8.2`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/z/ZeroMQ.md b/docs/version-specific/supported-software/z/ZeroMQ.md index d6ae794b37..70d2863d5f 100644 --- a/docs/version-specific/supported-software/z/ZeroMQ.md +++ b/docs/version-specific/supported-software/z/ZeroMQ.md @@ -6,29 +6,10 @@ search: ZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems. -*homepage*: +*homepage*: version | toolchain --------|---------- -``4.1.4`` | ``foss/2016a`` -``4.1.4`` | ``intel/2016a`` -``4.1.5`` | ``intel/2016b`` -``4.2.0`` | ``foss/2016b`` -``4.2.0`` | ``intel/2016b`` -``4.2.2`` | ``foss/2017a`` -``4.2.2`` | ``foss/2017b`` -``4.2.2`` | ``fosscuda/2017b`` -``4.2.2`` | ``intel/2017a`` -``4.2.2`` | ``intel/2017b`` -``4.2.2`` | ``intelcuda/2017b`` -``4.2.5`` | ``foss/2018a`` -``4.2.5`` | ``foss/2018b`` -``4.2.5`` | ``fosscuda/2018b`` -``4.2.5`` | ``intel/2018a`` -``4.2.5`` | ``intel/2018b`` -``4.3.2`` | ``GCCcore/8.2.0`` -``4.3.2`` | ``GCCcore/8.3.0`` -``4.3.2`` | ``GCCcore/9.3.0`` ``4.3.3`` | ``GCCcore/10.2.0`` ``4.3.4`` | ``GCCcore/10.3.0`` ``4.3.4`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/z/Zgoubi.md b/docs/version-specific/supported-software/z/Zgoubi.md index 48b19ce279..a9fa829010 100644 --- a/docs/version-specific/supported-software/z/Zgoubi.md +++ b/docs/version-specific/supported-software/z/Zgoubi.md @@ -4,7 +4,7 @@ search: --- # Zgoubi -Zgoubi is a ray-tracing code in use for charged particle beam dynamics simulations. It can simulate beam dynamics in a large variety of machines and optical systems. +Zgoubi is a ray-tracing code in use for charged particle beam dynamics simulations. It can simulate beam dynamics in a large variety of machines and optical systems. *homepage*: diff --git a/docs/version-specific/supported-software/z/Zip.md b/docs/version-specific/supported-software/z/Zip.md index 0c5d96e870..bb1870c972 100644 --- a/docs/version-specific/supported-software/z/Zip.md +++ b/docs/version-specific/supported-software/z/Zip.md @@ -18,10 +18,6 @@ version | toolchain ``3.0`` | ``GCCcore/12.3.0`` ``3.0`` | ``GCCcore/13.2.0`` ``3.0`` | ``GCCcore/13.3.0`` -``3.0`` | ``GCCcore/7.3.0`` -``3.0`` | ``GCCcore/8.2.0`` -``3.0`` | ``GCCcore/8.3.0`` -``3.0`` | ``GCCcore/9.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/z/Zopfli.md b/docs/version-specific/supported-software/z/Zopfli.md index 80abaea3ba..725a1b829a 100644 --- a/docs/version-specific/supported-software/z/Zopfli.md +++ b/docs/version-specific/supported-software/z/Zopfli.md @@ -14,6 +14,7 @@ version | toolchain ``1.0.3`` | ``GCCcore/10.3.0`` ``1.0.3`` | ``GCCcore/11.3.0`` ``1.0.3`` | ``GCCcore/12.3.0`` +``1.0.3`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/z/index.md b/docs/version-specific/supported-software/z/index.md index ef40f14a9c..316b76d94a 100644 --- a/docs/version-specific/supported-software/z/index.md +++ b/docs/version-specific/supported-software/z/index.md @@ -17,14 +17,11 @@ search: * [zfp](zfp.md) * [Zgoubi](Zgoubi.md) * [ZIMPL](ZIMPL.md) - * [zingeR](zingeR.md) * [Zip](Zip.md) * [zlib](zlib.md) * [zlib-ng](zlib-ng.md) - * [zlibbioc](zlibbioc.md) * [Zoltan](Zoltan.md) * [Zopfli](Zopfli.md) - * [ZPAQ](ZPAQ.md) * [zsh](zsh.md) * [zstd](zstd.md) * [zUMIs](zUMIs.md) diff --git a/docs/version-specific/supported-software/z/zarr.md b/docs/version-specific/supported-software/z/zarr.md index 40d7f1beee..8e409a3e1a 100644 --- a/docs/version-specific/supported-software/z/zarr.md +++ b/docs/version-specific/supported-software/z/zarr.md @@ -4,20 +4,20 @@ search: --- # zarr -Zarr is a Python package providing an implementation of compressed, chunked, N-dimensional arrays, designed for use in parallel computing. +Zarr is a Python package providing an implementation of compressed, chunked, N-dimensional arrays, designed for use in parallel computing. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.1.4`` | ``-Python-2.7.13`` | ``foss/2017a`` -``2.10.1`` | | ``foss/2021a`` -``2.13.3`` | | ``foss/2021b`` -``2.13.3`` | | ``foss/2022a`` -``2.16.0`` | | ``foss/2022b`` -``2.17.1`` | | ``foss/2023a`` -``2.4.0`` | ``-Python-3.8.2`` | ``foss/2020a`` -``2.8.1`` | | ``foss/2020b`` +version | toolchain +--------|---------- +``2.10.1`` | ``foss/2021a`` +``2.13.3`` | ``foss/2021b`` +``2.13.3`` | ``foss/2022a`` +``2.16.0`` | ``foss/2022b`` +``2.17.1`` | ``foss/2023a`` +``2.18.3`` | ``foss/2023b`` +``2.18.4`` | ``foss/2024a`` +``2.8.1`` | ``foss/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/z/zfp.md b/docs/version-specific/supported-software/z/zfp.md index 3af0a3b7ce..1938212376 100644 --- a/docs/version-specific/supported-software/z/zfp.md +++ b/docs/version-specific/supported-software/z/zfp.md @@ -13,8 +13,8 @@ version | toolchain ``0.5.5`` | ``GCCcore/10.2.0`` ``1.0.0`` | ``GCCcore/10.3.0`` ``1.0.0`` | ``GCCcore/11.3.0`` -``1.0.0`` | ``GCCcore/9.3.0`` ``1.0.1`` | ``GCCcore/12.3.0`` +``1.0.1`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/z/zingeR.md b/docs/version-specific/supported-software/z/zingeR.md deleted file mode 100644 index be3e357f2b..0000000000 --- a/docs/version-specific/supported-software/z/zingeR.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# zingeR - -Zero-Inflated Negative binomial Gene Expression in R - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20180131`` | ``-R-3.5.1`` | ``foss/2018b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/z/zlib-ng.md b/docs/version-specific/supported-software/z/zlib-ng.md index f28a44f7c9..e2333029d2 100644 --- a/docs/version-specific/supported-software/z/zlib-ng.md +++ b/docs/version-specific/supported-software/z/zlib-ng.md @@ -15,6 +15,7 @@ version | toolchain ``2.0.7`` | ``GCCcore/11.3.0`` ``2.1.6`` | ``GCCcore/12.3.0`` ``2.2.1`` | ``GCCcore/13.3.0`` +``2.2.2`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/z/zlib.md b/docs/version-specific/supported-software/z/zlib.md index f7e6dea6a9..94ddf3785c 100644 --- a/docs/version-specific/supported-software/z/zlib.md +++ b/docs/version-specific/supported-software/z/zlib.md @@ -6,75 +6,24 @@ search: zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.2.10`` | ``system`` -``1.2.11`` | ``GCCcore/10.1.0`` ``1.2.11`` | ``GCCcore/10.2.0`` ``1.2.11`` | ``GCCcore/10.3.0`` ``1.2.11`` | ``GCCcore/11.1.0`` ``1.2.11`` | ``GCCcore/11.2.0`` -``1.2.11`` | ``GCCcore/5.4.0`` -``1.2.11`` | ``GCCcore/5.5.0`` -``1.2.11`` | ``GCCcore/6.3.0`` -``1.2.11`` | ``GCCcore/6.4.0`` -``1.2.11`` | ``GCCcore/7.1.0`` -``1.2.11`` | ``GCCcore/7.2.0`` -``1.2.11`` | ``GCCcore/7.3.0`` -``1.2.11`` | ``GCCcore/7.4.0`` -``1.2.11`` | ``GCCcore/8.1.0`` -``1.2.11`` | ``GCCcore/8.2.0`` -``1.2.11`` | ``GCCcore/8.3.0`` -``1.2.11`` | ``GCCcore/8.4.0`` -``1.2.11`` | ``GCCcore/9.1.0`` -``1.2.11`` | ``GCCcore/9.2.0`` -``1.2.11`` | ``GCCcore/9.3.0`` -``1.2.11`` | ``GCCcore/9.4.0`` -``1.2.11`` | ``GCCcore/system`` -``1.2.11`` | ``gimkl/2017a`` ``1.2.11`` | ``system`` ``1.2.12`` | ``GCCcore/11.3.0`` ``1.2.12`` | ``GCCcore/12.1.0`` ``1.2.12`` | ``GCCcore/12.2.0`` -``1.2.12`` | ``GCCcore/9.5.0`` ``1.2.12`` | ``system`` ``1.2.13`` | ``GCCcore/11.4.0`` ``1.2.13`` | ``GCCcore/12.3.0`` ``1.2.13`` | ``GCCcore/13.1.0`` ``1.2.13`` | ``GCCcore/13.2.0`` ``1.2.13`` | ``system`` -``1.2.7`` | ``GCC/4.8.1`` -``1.2.7`` | ``GCC/4.8.2`` -``1.2.8`` | ``GCC/4.8.2`` -``1.2.8`` | ``GCC/4.8.3`` -``1.2.8`` | ``GCC/4.8.4`` -``1.2.8`` | ``GCC/4.9.2-binutils-2.25`` -``1.2.8`` | ``GCC/4.9.2`` -``1.2.8`` | ``GCC/4.9.3-2.25`` -``1.2.8`` | ``GCC/4.9.3-binutils-2.25`` -``1.2.8`` | ``GCC/4.9.3`` -``1.2.8`` | ``GCC/5.1.0-binutils-2.25`` -``1.2.8`` | ``GCCcore/4.9.2`` -``1.2.8`` | ``GCCcore/4.9.3`` -``1.2.8`` | ``GCCcore/4.9.4`` -``1.2.8`` | ``GCCcore/5.3.0`` -``1.2.8`` | ``GCCcore/5.4.0`` -``1.2.8`` | ``GCCcore/6.1.0`` -``1.2.8`` | ``GCCcore/6.2.0`` -``1.2.8`` | ``GCCcore/6.3.0`` -``1.2.8`` | ``GNU/4.9.3-2.25`` -``1.2.8`` | ``foss/2016.04`` -``1.2.8`` | ``foss/2016a`` -``1.2.8`` | ``gimkl/2.11.5`` -``1.2.8`` | ``intel/2016.02-GCC-4.9`` -``1.2.8`` | ``intel/2016a`` -``1.2.8`` | ``intel/2016b`` -``1.2.8`` | ``intel/2017.01`` -``1.2.8`` | ``iomkl/2016.07`` -``1.2.8`` | ``iomkl/2016.09-GCC-4.9.3-2.25`` -``1.2.8`` | ``system`` ``1.3.1`` | ``GCCcore/13.3.0`` ``1.3.1`` | ``GCCcore/14.1.0`` ``1.3.1`` | ``GCCcore/14.2.0`` diff --git a/docs/version-specific/supported-software/z/zlibbioc.md b/docs/version-specific/supported-software/z/zlibbioc.md deleted file mode 100644 index 6542186848..0000000000 --- a/docs/version-specific/supported-software/z/zlibbioc.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# zlibbioc - -This package uses the source code of zlib-1.2.5 to create libraries for systems that do not have these available via other means. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.18.0`` | ``-R-3.2.3`` | ``intel/2016a`` -``1.20.0`` | ``-R-3.3.1`` | ``intel/2016b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/z/zsh.md b/docs/version-specific/supported-software/z/zsh.md index f01855388e..ee207d9c6b 100644 --- a/docs/version-specific/supported-software/z/zsh.md +++ b/docs/version-specific/supported-software/z/zsh.md @@ -6,14 +6,12 @@ search: Zsh is a shell designed for interactive use, although it is also a powerful scripting language. -*homepage*: +*homepage*: version | toolchain --------|---------- -``5.1.1`` | ``GNU/4.9.3-2.25`` -``5.2`` | ``foss/2016b`` -``5.8`` | ``GCC/8.3.0`` ``5.8`` | ``system`` +``5.9`` | ``GCCcore/13.3.0`` ``5.9`` | ``system`` diff --git a/docs/version-specific/supported-software/z/zstd.md b/docs/version-specific/supported-software/z/zstd.md index 710631693c..dd5f15cf9e 100644 --- a/docs/version-specific/supported-software/z/zstd.md +++ b/docs/version-specific/supported-software/z/zstd.md @@ -4,18 +4,12 @@ search: --- # zstd -Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set. +Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set. *homepage*: version | toolchain --------|---------- -``1.3.4`` | ``foss/2016b`` -``1.4.0`` | ``GCCcore/7.3.0`` -``1.4.0`` | ``GCCcore/8.2.0`` -``1.4.0`` | ``foss/2018b`` -``1.4.4`` | ``GCCcore/8.3.0`` -``1.4.4`` | ``GCCcore/9.3.0`` ``1.4.5`` | ``GCCcore/10.2.0`` ``1.4.9`` | ``GCCcore/10.3.0`` ``1.5.0`` | ``GCCcore/11.2.0`` @@ -24,6 +18,7 @@ version | toolchain ``1.5.5`` | ``GCCcore/12.3.0`` ``1.5.5`` | ``GCCcore/13.2.0`` ``1.5.6`` | ``GCCcore/13.3.0`` +``1.5.6`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/toolchain-opts.md b/docs/version-specific/toolchain-opts.md index 12137b073a..1bb64f4e44 100644 --- a/docs/version-specific/toolchain-opts.md +++ b/docs/version-specific/toolchain-opts.md @@ -8,3857 +8,3919 @@ ### Available options for cgmpich toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``basic-block-vectorize``|Basic block vectorization |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop-vectorize`` |Loop vectorization |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``basic-block-vectorize`` |Basic block vectorization |``False`` +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop-vectorize`` |Loop vectorization |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## cgmpolf ### Available options for cgmpolf toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``basic-block-vectorize``|Basic block vectorization |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop-vectorize`` |Loop vectorization |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``basic-block-vectorize`` |Basic block vectorization |``False`` +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop-vectorize`` |Loop vectorization |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## cgmvapich2 ### Available options for cgmvapich2 toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``basic-block-vectorize``|Basic block vectorization |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop-vectorize`` |Loop vectorization |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``basic-block-vectorize`` |Basic block vectorization |``False`` +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop-vectorize`` |Loop vectorization |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## cgmvolf ### Available options for cgmvolf toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``basic-block-vectorize``|Basic block vectorization |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop-vectorize`` |Loop vectorization |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``basic-block-vectorize`` |Basic block vectorization |``False`` +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop-vectorize`` |Loop vectorization |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## cgompi ### Available options for cgompi toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``basic-block-vectorize``|Basic block vectorization |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop-vectorize`` |Loop vectorization |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``basic-block-vectorize`` |Basic block vectorization |``False`` +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop-vectorize`` |Loop vectorization |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## cgoolf ### Available options for cgoolf toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``basic-block-vectorize``|Basic block vectorization |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop-vectorize`` |Loop vectorization |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``basic-block-vectorize`` |Basic block vectorization |``False`` +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop-vectorize`` |Loop vectorization |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## ClangGCC ### Available options for ClangGCC toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``basic-block-vectorize``|Basic block vectorization |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop-vectorize`` |Loop vectorization |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``basic-block-vectorize`` |Basic block vectorization |``False`` +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop-vectorize`` |Loop vectorization |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## CrayCCE ### Available options for CrayCCE toolchain -option |description |default --------------------------|---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``dynamic`` |Generate dynamically linked executable |``True`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``mpich-mt`` |Directs the driver to link in an alternate version of the Cray-MPICH library which provides fine-grained multi-threading support to applications that perform MPI operations within threaded regions.|``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``False`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` -``verbose`` |Verbose output |``True`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``dynamic`` |Generate dynamically linked executable |``True`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``mpich-mt`` |Directs the driver to link in an alternative version of the Cray-MPICH library which provides fine-grained multi-threading support to applications that perform MPI operations within threaded regions.|``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``False`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` +``verbose`` |Verbose output |``True`` +``veryloose`` |Very loose precision |``False`` ## CrayGNU ### Available options for CrayGNU toolchain -option |description |default --------------------------|---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``dynamic`` |Generate dynamically linked executable |``True`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``mpich-mt`` |Directs the driver to link in an alternate version of the Cray-MPICH library which provides fine-grained multi-threading support to applications that perform MPI operations within threaded regions.|``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``False`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` -``verbose`` |Verbose output |``True`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``dynamic`` |Generate dynamically linked executable |``True`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``mpich-mt`` |Directs the driver to link in an alternative version of the Cray-MPICH library which provides fine-grained multi-threading support to applications that perform MPI operations within threaded regions.|``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``False`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` +``verbose`` |Verbose output |``True`` +``veryloose`` |Very loose precision |``False`` ## CrayIntel ### Available options for CrayIntel toolchain -option |description |default --------------------------|---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``dynamic`` |Generate dynamically linked executable |``True`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``mpich-mt`` |Directs the driver to link in an alternate version of the Cray-MPICH library which provides fine-grained multi-threading support to applications that perform MPI operations within threaded regions.|``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``False`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` -``verbose`` |Verbose output |``True`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``dynamic`` |Generate dynamically linked executable |``True`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``mpich-mt`` |Directs the driver to link in an alternative version of the Cray-MPICH library which provides fine-grained multi-threading support to applications that perform MPI operations within threaded regions.|``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``False`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` +``verbose`` |Verbose output |``True`` +``veryloose`` |Very loose precision |``False`` ## CrayPGI ### Available options for CrayPGI toolchain -option |description |default --------------------------|---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``dynamic`` |Generate dynamically linked executable |``True`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``mpich-mt`` |Directs the driver to link in an alternate version of the Cray-MPICH library which provides fine-grained multi-threading support to applications that perform MPI operations within threaded regions.|``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``False`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` -``verbose`` |Verbose output |``True`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``dynamic`` |Generate dynamically linked executable |``True`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``mpich-mt`` |Directs the driver to link in an alternative version of the Cray-MPICH library which provides fine-grained multi-threading support to applications that perform MPI operations within threaded regions.|``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``False`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` +``verbose`` |Verbose output |``True`` +``veryloose`` |Very loose precision |``False`` ## FCC ### Available options for FCC toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## ffmpi ### Available options for ffmpi toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## foss ### Available options for foss toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## fosscuda ### Available options for fosscuda toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## Fujitsu ### Available options for Fujitsu toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## GCC ### Available options for GCC toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## GCCcore ### Available options for GCCcore toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gcccuda ### Available options for gcccuda toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gfbf ### Available options for gfbf toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gimkl ### Available options for gimkl toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gimpi ### Available options for gimpi toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gimpic ### Available options for gimpic toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## giolf ### Available options for giolf toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## giolfc ### Available options for giolfc toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gmacml ### Available options for gmacml toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gmkl ### Available options for gmkl toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gmklc ### Available options for gmklc toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gmpflf ### Available options for gmpflf toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gmpich2 ### Available options for gmpich2 toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gmpich ### Available options for gmpich toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gmpit ### Available options for gmpit toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gmpolf ### Available options for gmpolf toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gmvapich2 ### Available options for gmvapich2 toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gmvolf ### Available options for gmvolf toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## GNU ### Available options for GNU toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## goalf ### Available options for goalf toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gobff ### Available options for gobff toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## goblf ### Available options for goblf toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gofbf ### Available options for gofbf toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## golf ### Available options for golf toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## golfc ### Available options for golfc toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gomkl ### Available options for gomkl toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gomklc ### Available options for gomklc toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gompi ### Available options for gompi toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gompic ### Available options for gompic toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## goolf ### Available options for goolf toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## goolfc ### Available options for goolfc toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gpsmpi ### Available options for gpsmpi toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gpsolf ### Available options for gpsolf toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gqacml ### Available options for gqacml toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gsmpi ### Available options for gsmpi toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## gsolf ### Available options for gsolf toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``f2c`` |Generate code compatible with f2c and f77 |``False`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loop`` |Automatic loop parallelisation |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``lto`` |Enable Link Time Optimization |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## iccifort ### Available options for iccifort toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``intel-static`` |Link Intel provided libraries statically |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``no-icc`` |Don't set Intel specific macros |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``intel-static`` |Link Intel provided libraries statically |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no-icc`` |Don't set Intel specific macros |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## iccifortcuda ### Available options for iccifortcuda toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``intel-static`` |Link Intel provided libraries statically |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``no-icc`` |Don't set Intel specific macros |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``intel-static`` |Link Intel provided libraries statically |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no-icc`` |Don't set Intel specific macros |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## ictce ### Available options for ictce toolchain -option |description |default --------------------------|------------------------------------------------------------------------------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``intel-static`` |Link Intel provided libraries statically |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``no-icc`` |Don't set Intel specific macros |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` -``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` -``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|------------------------------------------------------------------------------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``intel-static`` |Link Intel provided libraries statically |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no-icc`` |Don't set Intel specific macros |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` +``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` +``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## ifbf ### Available options for ifbf toolchain -option |description |default --------------------------|------------------------------------------------------------------------------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``intel-static`` |Link Intel provided libraries statically |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``no-icc`` |Don't set Intel specific macros |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` -``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` -``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|------------------------------------------------------------------------------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``intel-static`` |Link Intel provided libraries statically |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no-icc`` |Don't set Intel specific macros |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` +``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` +``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## iibff ### Available options for iibff toolchain -option |description |default --------------------------|------------------------------------------------------------------------------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``intel-static`` |Link Intel provided libraries statically |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``no-icc`` |Don't set Intel specific macros |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` -``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` -``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|------------------------------------------------------------------------------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``intel-static`` |Link Intel provided libraries statically |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no-icc`` |Don't set Intel specific macros |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` +``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` +``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## iimkl ### Available options for iimkl toolchain -option |description |default --------------------------|------------------------------------------------------------------------------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``intel-static`` |Link Intel provided libraries statically |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``no-icc`` |Don't set Intel specific macros |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` -``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` -``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|------------------------------------------------------------------------------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``intel-static`` |Link Intel provided libraries statically |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no-icc`` |Don't set Intel specific macros |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` +``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` +``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## iimklc ### Available options for iimklc toolchain -option |description |default --------------------------|------------------------------------------------------------------------------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``intel-static`` |Link Intel provided libraries statically |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``no-icc`` |Don't set Intel specific macros |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` -``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` -``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|------------------------------------------------------------------------------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``intel-static`` |Link Intel provided libraries statically |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no-icc`` |Don't set Intel specific macros |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` +``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` +``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## iimpi ### Available options for iimpi toolchain -option |description |default --------------------------|------------------------------------------------------------------------------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``intel-static`` |Link Intel provided libraries statically |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``no-icc`` |Don't set Intel specific macros |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` -``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` -``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|------------------------------------------------------------------------------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``intel-static`` |Link Intel provided libraries statically |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no-icc`` |Don't set Intel specific macros |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` +``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` +``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## iimpic ### Available options for iimpic toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``intel-static`` |Link Intel provided libraries statically |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``no-icc`` |Don't set Intel specific macros |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``intel-static`` |Link Intel provided libraries statically |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no-icc`` |Don't set Intel specific macros |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## iiqmpi ### Available options for iiqmpi toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``intel-static`` |Link Intel provided libraries statically |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``no-icc`` |Don't set Intel specific macros |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``intel-static`` |Link Intel provided libraries statically |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no-icc`` |Don't set Intel specific macros |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## impich ### Available options for impich toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``intel-static`` |Link Intel provided libraries statically |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``no-icc`` |Don't set Intel specific macros |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``intel-static`` |Link Intel provided libraries statically |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no-icc`` |Don't set Intel specific macros |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## impmkl ### Available options for impmkl toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``intel-static`` |Link Intel provided libraries statically |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``no-icc`` |Don't set Intel specific macros |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``intel-static`` |Link Intel provided libraries statically |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no-icc`` |Don't set Intel specific macros |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## intel-compilers ### Available options for intel-compilers toolchain -option |description |default --------------------------|------------------------------------------------------------------------------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``intel-static`` |Link Intel provided libraries statically |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``no-icc`` |Don't set Intel specific macros |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` -``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` -``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|------------------------------------------------------------------------------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``intel-static`` |Link Intel provided libraries statically |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no-icc`` |Don't set Intel specific macros |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` +``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` +``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## intel-para ### Available options for intel-para toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``intel-static`` |Link Intel provided libraries statically |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``no-icc`` |Don't set Intel specific macros |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``intel-static`` |Link Intel provided libraries statically |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no-icc`` |Don't set Intel specific macros |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## intel ### Available options for intel toolchain -option |description |default --------------------------|------------------------------------------------------------------------------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``intel-static`` |Link Intel provided libraries statically |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``no-icc`` |Don't set Intel specific macros |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` -``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` -``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|------------------------------------------------------------------------------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``intel-static`` |Link Intel provided libraries statically |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no-icc`` |Don't set Intel specific macros |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` +``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` +``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## intelcuda ### Available options for intelcuda toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``intel-static`` |Link Intel provided libraries statically |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``no-icc`` |Don't set Intel specific macros |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``intel-static`` |Link Intel provided libraries statically |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no-icc`` |Don't set Intel specific macros |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## iofbf ### Available options for iofbf toolchain -option |description |default --------------------------|------------------------------------------------------------------------------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``intel-static`` |Link Intel provided libraries statically |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``no-icc`` |Don't set Intel specific macros |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` -``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` -``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|------------------------------------------------------------------------------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``intel-static`` |Link Intel provided libraries statically |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no-icc`` |Don't set Intel specific macros |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` +``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` +``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## iomkl ### Available options for iomkl toolchain -option |description |default --------------------------|------------------------------------------------------------------------------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``intel-static`` |Link Intel provided libraries statically |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``no-icc`` |Don't set Intel specific macros |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` -``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` -``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|------------------------------------------------------------------------------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``intel-static`` |Link Intel provided libraries statically |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no-icc`` |Don't set Intel specific macros |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` +``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` +``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## iomklc ### Available options for iomklc toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``intel-static`` |Link Intel provided libraries statically |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``no-icc`` |Don't set Intel specific macros |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``intel-static`` |Link Intel provided libraries statically |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no-icc`` |Don't set Intel specific macros |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## iompi ### Available options for iompi toolchain -option |description |default --------------------------|------------------------------------------------------------------------------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``intel-static`` |Link Intel provided libraries statically |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``no-icc`` |Don't set Intel specific macros |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` -``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` -``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|------------------------------------------------------------------------------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``intel-static`` |Link Intel provided libraries statically |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no-icc`` |Don't set Intel specific macros |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` +``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` +``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## iompic ### Available options for iompic toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``intel-static`` |Link Intel provided libraries statically |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``no-icc`` |Don't set Intel specific macros |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``intel-static`` |Link Intel provided libraries statically |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no-icc`` |Don't set Intel specific macros |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## ipsmpi ### Available options for ipsmpi toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``intel-static`` |Link Intel provided libraries statically |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``no-icc`` |Don't set Intel specific macros |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``intel-static`` |Link Intel provided libraries statically |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no-icc`` |Don't set Intel specific macros |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## iqacml ### Available options for iqacml toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``intel-static`` |Link Intel provided libraries statically |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``no-icc`` |Don't set Intel specific macros |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``intel-static`` |Link Intel provided libraries statically |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no-icc`` |Don't set Intel specific macros |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## ismkl ### Available options for ismkl toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``intel-static`` |Link Intel provided libraries statically |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``no-icc`` |Don't set Intel specific macros |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``intel-static`` |Link Intel provided libraries statically |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no-icc`` |Don't set Intel specific macros |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## NVHPC ### Available options for NVHPC toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## nvofbf ### Available options for nvofbf toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## nvompi ### Available options for nvompi toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## nvompic ### Available options for nvompic toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## nvpsmpi ### Available options for nvpsmpi toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## nvpsmpic ### Available options for nvpsmpic toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## PGI ### Available options for PGI toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## pmkl ### Available options for pmkl toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## pomkl ### Available options for pomkl toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## pompi ### Available options for pompi toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## system ### Available options for system toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------|---------------------------------------------------------------------|-------- +``rpath``|Use RPATH wrappers when --rpath is enabled in EasyBuild configuration|``True`` ## xlcxlf ### Available options for xlcxlf toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ibm-static`` |Link IBM XL provided libraries statically |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ibm-static`` |Link IBM XL provided libraries statically |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## xlmpich2 ### Available options for xlmpich2 toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ibm-static`` |Link IBM XL provided libraries statically |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ibm-static`` |Link IBM XL provided libraries statically |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## xlmpich ### Available options for xlmpich toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ibm-static`` |Link IBM XL provided libraries statically |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ibm-static`` |Link IBM XL provided libraries statically |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## xlmvapich2 ### Available options for xlmvapich2 toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ibm-static`` |Link IBM XL provided libraries statically |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ibm-static`` |Link IBM XL provided libraries statically |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` ## xlompi ### Available options for xlompi toolchain -option |description |default --------------------------|-----------------------------------------------------------------------|--------- -``32bit`` |Compile 32bit target |``False`` -``cciscxx`` |Use CC as CXX |``False`` -``cstd`` |Specify C standard |``None`` -``debug`` |Enable debug |``False`` -``defaultopt`` |Default compiler optimizations |``False`` -``defaultprec`` |Default precision |``False`` -``error-unknown-option`` |Error instead of warning for unknown options |``False`` -``extra_cflags`` |Specify extra CFLAGS options. |``None`` -``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` -``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` -``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` -``extra_fflags`` |Specify extra FFLAGS options. |``None`` -``i8`` |Integers are 8 byte integers |``False`` -``ibm-static`` |Link IBM XL provided libraries statically |``False`` -``ieee`` |Adhere to IEEE-754 rules |``False`` -``loose`` |Loose precision |``False`` -``lowopt`` |Low compiler optimizations |``False`` -``noopt`` |Disable compiler optimizations |``False`` -``openmp`` |Enable OpenMP |``False`` -``opt`` |High compiler optimizations |``False`` -``optarch`` |Enable architecture optimizations |``True`` -``packed-linker-options``|Pack the linker options as comma separated list |``False`` -``pic`` |Use PIC |``False`` -``precise`` |High precision |``False`` -``r8`` |Real is 8 byte real |``False`` -``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` -``shared`` |Build shared library |``False`` -``static`` |Build static library |``False`` -``strict`` |Strict (highest) precision |``False`` -``unroll`` |Unroll loops |``False`` -``usempi`` |Use MPI compiler as default compiler |``False`` -``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` -``verbose`` |Verbose output |``False`` -``veryloose`` |Very loose precision |``False`` +option |description |default +---------------------------|-----------------------------------------------------------------------|--------- +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``error-unknown-option`` |Error instead of warning for unknown options |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ibm-static`` |Link IBM XL provided libraries statically |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False``