black edits

add flake8, pre-commit, pyproject files

tests

add environment.yml

* copy .github directory

* nest inside .github

* update for pdfgui

* test tests (#131)

* pin numpy to 1.x for now

* add environment.yml

* test tests

* trigger

* try again with requirements

* try again with requirements

* now update test reqs

* try and handle xwindow display issue

* try using xfvb action

* refactor xvfb action commands

* source activate?

* different tack, generate error and work on test?

* again

* again

* chatgpt method

* supress running qc of meta.yaml in conda-forge by renaming

* try new pyproject.toml

* again2

* forgot to install diffpy.pdfgui!

* back to setup.py

* copyright fixes (#134)

* Flake8v1 (#137)

* move modules to top

* remove extra #s

* line length and extra #s

* extra #s

* modules to top

* replace lambda function and line length

* add # noqa: E501

* modules to top

* fix lambda func

* Flake8v2 (#138)

* fix not in

* fix lambda functions

* remove #

* remove lambda func

* modules to top

* mod to top

* line length and import and #s

* fix line length and #s

* comment unused var, fix imports and #s

* modules to top and inline comment fix

* def functions within function to pass tests

* move functions outside of class

* Flake8v4 (#140)

* capitalize Trustees

* Exception on errorwrapper

* wx.PyObjectError in except

* ValueError and Exception

* Exception

* remove import

* pre-commit errors in comments (#141)

* wx12 and bonlengthdialog (#142)

* wx12 and bonlengthdialog

* devutils/makedist import order

* news (#143)

* cookiecutter: untracked files (#149)

* untracked files

* [pre-commit.ci] auto fixes from pre-commit hooks

* update LICENSE.rst

* update AUTHORS.rst and remove AUTHORS.txt

* tipping our hat

* Remove BSD 3-Clause, leaving Columbia copyright

* remove README from requirements

* replace requirements

* adding wxpython back

* adding back freezegun

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Simon Billinge <sbillinge@users.noreply.github.com>

* Files in doc directory (#157)

* move images to _static

* move files in .../doc/manual into doc/source

* move .gitignore file

* move rest of files to doc/

* move makefile from doc/source to doc/

* remove Makefile from doc/source

* update Makefile in doc

* add rest of cookiecutter files into doc/source

* add make.bat file

* moving .py files into doc/manual

* move files into manual

* moving images into manual

* add TUTORIAL.rst

* convert .txt to .rst in TUTORIAL

* fix formating

* formating

* formating

* reference formating

* move TUTORIAL.rst to manual

* move tutorial.rst from manual to source

* rm extra tutorial.rst

* add tutorial section to index.rst

* index.rst formating

* files (#158)

* Replace Caden's PR (#160)

Minor copyright fixes and news update

* try workflow for testing (#161)

* workflow for testing

* test unittest

* try Xvfb

* try to remove no test ran line

* [pre-commit.ci] auto fixes from pre-commit hooks

* try to remove no test ran line

* try pytest

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* remove unused files (#166)

* update requirements/run.txt (#165)

* update requirements/run.txt, include right package

* use matplotlib-base

* remove dependency tests (#169)

* fix deprecation warning when test (#170)

* fix pkg_resources deprecation warning

* use __name__

* daemon deprecation

* rst file changes (#171)

* Use the original license

* other file changes

* add a bit more in readme

* remove epydoc (#173)

* build doc (#174)

* build doc

* pre commit

* Apply the new workflow (#168)

* Apply the new workflow

* remove prerelease from docs workflow

* rename to main

---------

Co-authored-by: Caden Myers <cjm2304@columbia.edu>
Co-authored-by: Caden Myers <158210249+cadenmyers13@users.noreply.github.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Tieqiong <123656525+Tieqiong@users.noreply.github.com>