codecov, flake8, docs workflow

Author: sbillinge

.codecov.yml

@@ -20,7 +20,7 @@ coverage:
         target: auto
         if_no_uploads: error
         if_not_found: success
-        if_ci_failed: failure
+        if_ci_failed: error
         paths: '!*/tests/.*'
 
       tests:

.coveragerc

@@ -1,6 +1,6 @@
 [run]
 source =
-    src/diffpy/pdfmorph/
+    diffpy.pdfmorph
 [report]
 omit =
     */python?.?/*

.flake8

@@ -7,4 +7,5 @@ exclude =
     doc/source/conf.py
 max-line-length = 115
 # Ignore some style 'errors' produced while formatting by 'black'
-ignore = W503
+# https://black.readthedocs.io/en/stable/guides/using_black_with_other_tools.html#labels-why-pycodestyle-warnings
+extend-ignore = E203

.github/workflows/docs.yml

@@ -6,7 +6,6 @@ on:
       - main
   release:
 
-
 jobs:
   test:
     runs-on: ubuntu-latest
@@ -35,10 +34,10 @@ jobs:
         run: python -m pip install . --no-deps
 
       - name: build documents
-        run: make -C doc/manual html
+        run: make -C doc html
 
       - name: Deploy
         uses: peaceiris/actions-gh-pages@v4
         with:
           github_token: ${{ secrets.GITHUB_TOKEN }}
-          publish_dir: ./doc/manual/build/html
+          publish_dir: ./doc/build/html