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DOC: add updated pdfgetx v2.1.0 user manual to source
  • Loading branch information
tienhungvuong committed Jul 16, 2020
commit cee3f198349129bc84d196fa727147f9583b923e
Binary file modified static_root/doc/pdfgetx/2.1.0/PDFgetXNS3_manual.pdf
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2 changes: 1 addition & 1 deletion static_root/doc/pdfgetx/2.1.0/_sources/install.rst.txt
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ Software requirements
------------------------------------------------------------------------

This software is written in Python programming language, therefore
you must have Python 3.7, 3.6, 3.5, 3.4 or 2.7 installed. In addition,
you must have Python 3.7, 3.6, 3.5 or 2.7 installed. In addition,
the following third-party Python libraries are also required:

* pip - Python package installer
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2 changes: 2 additions & 0 deletions static_root/doc/pdfgetx/2.1.0/_sources/intro.rst.txt
Original file line number Diff line number Diff line change
Expand Up @@ -34,6 +34,8 @@ Timur Davis,
Chia-Hao (Timothy) Liu,
Christopher Wright,
Christopher Farrow,
Hung Vuong,
Songsheng Tao,
Simon Billinge.


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6 changes: 5 additions & 1 deletion static_root/doc/pdfgetx/2.1.0/_static/basic.css
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
*
* Sphinx stylesheet -- basic theme.
*
* :copyright: Copyright 2007-2019 by the Sphinx team, see AUTHORS.
* :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS.
* :license: BSD, see LICENSE for details.
*
*/
Expand Down Expand Up @@ -672,6 +672,10 @@ div.code-block-caption + div > div.highlight > pre {
margin-top: 0;
}

div.doctest > div.highlight span.gp { /* gp: Generic.Prompt */
user-select: none;
}

div.code-block-caption span.caption-number {
padding: 0.1em 0.3em;
font-style: italic;
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2 changes: 1 addition & 1 deletion static_root/doc/pdfgetx/2.1.0/_static/classic.css
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
*
* Sphinx stylesheet -- classic theme.
*
* :copyright: Copyright 2007-2019 by the Sphinx team, see AUTHORS.
* :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS.
* :license: BSD, see LICENSE for details.
*
*/
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7 changes: 4 additions & 3 deletions static_root/doc/pdfgetx/2.1.0/_static/doctools.js
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Expand Up @@ -4,7 +4,7 @@
*
* Sphinx JavaScript utilities for all documentation.
*
* :copyright: Copyright 2007-2019 by the Sphinx team, see AUTHORS.
* :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS.
* :license: BSD, see LICENSE for details.
*
*/
Expand Down Expand Up @@ -283,10 +283,11 @@ var Documentation = {
},

initOnKeyListeners: function() {
$(document).keyup(function(event) {
$(document).keydown(function(event) {
var activeElementType = document.activeElement.tagName;
// don't navigate when in search box or textarea
if (activeElementType !== 'TEXTAREA' && activeElementType !== 'INPUT' && activeElementType !== 'SELECT') {
if (activeElementType !== 'TEXTAREA' && activeElementType !== 'INPUT' && activeElementType !== 'SELECT'
&& !event.altKey && !event.ctrlKey && !event.metaKey && !event.shiftKey) {
switch (event.keyCode) {
case 37: // left
var prevHref = $('link[rel="prev"]').prop('href');
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Original file line number Diff line number Diff line change
Expand Up @@ -3,6 +3,7 @@ var DOCUMENTATION_OPTIONS = {
VERSION: '2.1.0',
LANGUAGE: 'None',
COLLAPSE_INDEX: false,
BUILDER: 'html',
FILE_SUFFIX: '.html',
HAS_SOURCE: true,
SOURCELINK_SUFFIX: '.txt',
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2 changes: 1 addition & 1 deletion static_root/doc/pdfgetx/2.1.0/_static/language_data.js
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
* This script contains the language-specific data used by searchtools.js,
* namely the list of stopwords, stemmer, scorer and splitter.
*
* :copyright: Copyright 2007-2019 by the Sphinx team, see AUTHORS.
* :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS.
* :license: BSD, see LICENSE for details.
*
*/
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8 changes: 4 additions & 4 deletions static_root/doc/pdfgetx/2.1.0/_static/searchtools.js
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
*
* Sphinx JavaScript utilities for the full-text search.
*
* :copyright: Copyright 2007-2019 by the Sphinx team, see AUTHORS.
* :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS.
* :license: BSD, see LICENSE for details.
*
*/
Expand Down Expand Up @@ -245,7 +245,7 @@ var Search = {
if (results.length) {
var item = results.pop();
var listItem = $('<li style="display:none"></li>');
if (DOCUMENTATION_OPTIONS.FILE_SUFFIX === '') {
if (DOCUMENTATION_OPTIONS.BUILDER === 'dirhtml') {
// dirhtml builder
var dirname = item[0] + '/';
if (dirname.match(/\/index\/$/)) {
Expand Down Expand Up @@ -424,15 +424,15 @@ var Search = {
for (j = 0; j < _files.length; j++) {
file = _files[j];
if (!(file in scoreMap))
scoreMap[file] = {}
scoreMap[file] = {};
scoreMap[file][word] = o.score;
}
});

// create the mapping
for (j = 0; j < files.length; j++) {
file = files[j];
if (file in fileMap)
if (file in fileMap && fileMap[file].indexOf(word) === -1)
fileMap[file].push(word);
else
fileMap[file] = [word];
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18 changes: 9 additions & 9 deletions static_root/doc/pdfgetx/2.1.0/files.html
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Expand Up @@ -7,13 +7,13 @@
<link rel="stylesheet" href="_static/pydoctheme.css" type="text/css" />
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />

<script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
<script type="text/javascript" src="_static/jquery.js"></script>
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
<script type="text/javascript" src="_static/language_data.js"></script>
<script id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
<script src="_static/jquery.js"></script>
<script src="_static/underscore.js"></script>
<script src="_static/doctools.js"></script>
<script src="_static/language_data.js"></script>

<script type="text/javascript" src="_static/sidebar.js"></script>
<script src="_static/sidebar.js"></script>

<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
Expand Down Expand Up @@ -168,7 +168,7 @@ <h3 id="searchlabel">Quick search</h3>
</form>
</div>
</div>
<script type="text/javascript">$('#searchbox').show(0);</script>
<script>$('#searchbox').show(0);</script>
</div>
</div>
<div class="clearer"></div>
Expand All @@ -189,8 +189,8 @@ <h3>Navigation</h3>
</div>

<div class="footer" role="contentinfo">
&#169; Copyright 2019, Pavol Juhás, Timur Davis, Chia-Hao (Timothy) Liu, Christopher Wright, Christopher Farrow, Simon Billinge.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.1.
&#169; Copyright 2020, Pavol Juhás, Timur Davis, Chia-Hao (Timothy) Liu, Christopher Wright, Christopher Farrow, Simon Billinge.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.4.0.
</div>
</body>
</html>
18 changes: 9 additions & 9 deletions static_root/doc/pdfgetx/2.1.0/genindex.html
Original file line number Diff line number Diff line change
Expand Up @@ -8,13 +8,13 @@
<link rel="stylesheet" href="_static/pydoctheme.css" type="text/css" />
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />

<script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
<script type="text/javascript" src="_static/jquery.js"></script>
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
<script type="text/javascript" src="_static/language_data.js"></script>
<script id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
<script src="_static/jquery.js"></script>
<script src="_static/underscore.js"></script>
<script src="_static/doctools.js"></script>
<script src="_static/language_data.js"></script>

<script type="text/javascript" src="_static/sidebar.js"></script>
<script src="_static/sidebar.js"></script>

<link rel="index" title="Index" href="#" />
<link rel="search" title="Search" href="search.html" />
Expand Down Expand Up @@ -822,7 +822,7 @@ <h3 id="searchlabel">Quick search</h3>
</form>
</div>
</div>
<script type="text/javascript">$('#searchbox').show(0);</script>
<script>$('#searchbox').show(0);</script>
</div>
</div>
<div class="clearer"></div>
Expand All @@ -837,8 +837,8 @@ <h3>Navigation</h3>
</div>

<div class="footer" role="contentinfo">
&#169; Copyright 2019, Pavol Juhás, Timur Davis, Chia-Hao (Timothy) Liu, Christopher Wright, Christopher Farrow, Simon Billinge.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.1.
&#169; Copyright 2020, Pavol Juhás, Timur Davis, Chia-Hao (Timothy) Liu, Christopher Wright, Christopher Farrow, Simon Billinge.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.4.0.
</div>
</body>
</html>
22 changes: 11 additions & 11 deletions static_root/doc/pdfgetx/2.1.0/index.html
Original file line number Diff line number Diff line change
Expand Up @@ -7,13 +7,13 @@
<link rel="stylesheet" href="_static/pydoctheme.css" type="text/css" />
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />

<script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
<script type="text/javascript" src="_static/jquery.js"></script>
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
<script type="text/javascript" src="_static/language_data.js"></script>
<script id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
<script src="_static/jquery.js"></script>
<script src="_static/underscore.js"></script>
<script src="_static/doctools.js"></script>
<script src="_static/language_data.js"></script>

<script type="text/javascript" src="_static/sidebar.js"></script>
<script src="_static/sidebar.js"></script>

<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
Expand Down Expand Up @@ -45,7 +45,7 @@ <h1>diffpy.pdfgetx<a class="headerlink" href="#diffpy-pdfgetx" title="Permalink
<p>User manual for PDFgetX3, PDFgetN3, PDFgetS3 and Python package diffpy.pdfgetx.</p>
<div class="line-block">
<div class="line">Release 2.1.0</div>
<div class="line">December 03, 2019</div>
<div class="line">July 15, 2020</div>
</div>
<div class="section" id="table-of-contents">
<h2>Table of contents<a class="headerlink" href="#table-of-contents" title="Permalink to this headline">¶</a></h2>
Expand Down Expand Up @@ -100,7 +100,7 @@ <h2>Table of contents<a class="headerlink" href="#table-of-contents" title="Perm
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="release.html">Release notes</a><ul>
<li class="toctree-l2"><a class="reference internal" href="release.html#version-2-1-0-2019-12-03">Version 2.1.0 – 2019-12-03</a></li>
<li class="toctree-l2"><a class="reference internal" href="release.html#version-2-1-0-2020-07-15">Version 2.1.0 – 2020-07-15</a></li>
<li class="toctree-l2"><a class="reference internal" href="release.html#version-2-0-0-2018-11-02">Version 2.0.0 – 2018-11-02</a></li>
<li class="toctree-l2"><a class="reference internal" href="release.html#version-1-2-2018-01-12">Version 1.2 – 2018-01-12</a></li>
</ul>
Expand Down Expand Up @@ -154,7 +154,7 @@ <h3 id="searchlabel">Quick search</h3>
</form>
</div>
</div>
<script type="text/javascript">$('#searchbox').show(0);</script>
<script>$('#searchbox').show(0);</script>
</div>
</div>
<div class="clearer"></div>
Expand All @@ -172,8 +172,8 @@ <h3>Navigation</h3>
</div>

<div class="footer" role="contentinfo">
&#169; Copyright 2019, Pavol Juhás, Timur Davis, Chia-Hao (Timothy) Liu, Christopher Wright, Christopher Farrow, Simon Billinge.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.1.
&#169; Copyright 2020, Pavol Juhás, Timur Davis, Chia-Hao (Timothy) Liu, Christopher Wright, Christopher Farrow, Simon Billinge.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.4.0.
</div>
</body>
</html>
20 changes: 10 additions & 10 deletions static_root/doc/pdfgetx/2.1.0/install.html
Original file line number Diff line number Diff line change
Expand Up @@ -7,13 +7,13 @@
<link rel="stylesheet" href="_static/pydoctheme.css" type="text/css" />
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />

<script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
<script type="text/javascript" src="_static/jquery.js"></script>
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
<script type="text/javascript" src="_static/language_data.js"></script>
<script id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
<script src="_static/jquery.js"></script>
<script src="_static/underscore.js"></script>
<script src="_static/doctools.js"></script>
<script src="_static/language_data.js"></script>

<script type="text/javascript" src="_static/sidebar.js"></script>
<script src="_static/sidebar.js"></script>

<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
Expand Down Expand Up @@ -46,7 +46,7 @@ <h1>Installation<a class="headerlink" href="#installation" title="Permalink to t
<div class="section" id="software-requirements">
<h2>Software requirements<a class="headerlink" href="#software-requirements" title="Permalink to this headline">¶</a></h2>
<p>This software is written in Python programming language, therefore
you must have Python 3.7, 3.6, 3.5, 3.4 or 2.7 installed. In addition,
you must have Python 3.7, 3.6, 3.5 or 2.7 installed. In addition,
the following third-party Python libraries are also required:</p>
<ul class="simple">
<li><p>pip - Python package installer</p></li>
Expand Down Expand Up @@ -207,7 +207,7 @@ <h3 id="searchlabel">Quick search</h3>
</form>
</div>
</div>
<script type="text/javascript">$('#searchbox').show(0);</script>
<script>$('#searchbox').show(0);</script>
</div>
</div>
<div class="clearer"></div>
Expand All @@ -228,8 +228,8 @@ <h3>Navigation</h3>
</div>

<div class="footer" role="contentinfo">
&#169; Copyright 2019, Pavol Juhás, Timur Davis, Chia-Hao (Timothy) Liu, Christopher Wright, Christopher Farrow, Simon Billinge.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.1.
&#169; Copyright 2020, Pavol Juhás, Timur Davis, Chia-Hao (Timothy) Liu, Christopher Wright, Christopher Farrow, Simon Billinge.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.4.0.
</div>
</body>
</html>
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