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draft-3/cwl-context.jsonld

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"@type": "@vocab"
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},
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"cwl": "https://w3id.org/cwl/cwl#",
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"cwlVersion": {
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"@id": "https://w3id.org/cwl/cwl#cwlVersion",
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"@type": "@id"
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},
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"dct": "http://purl.org/dc/terms/",
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"default": "cwl:default",
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"description": "rdfs:comment",
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"dockerPull": "https://w3id.org/cwl/cwl#DockerRequirement/dockerPull",
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"dotproduct": "https://w3id.org/cwl/cwl#dotproduct",
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"double": "http://www.w3.org/2001/XMLSchema#double",
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"draft-3.dev1": "https://w3id.org/cwl/cwl#draft-3.dev1",
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"engine": {
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"@id": "https://w3id.org/cwl/cwl#engine",
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"@type": "@id"

draft-3/index.html

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</ol><li><a href="#EnumSchema">9. EnumSchema</a><ol class="nav nav-pills nav-stacked nav-secondary">
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</ol><li><a href="#ArraySchema">10. ArraySchema</a><ol class="nav nav-pills nav-stacked nav-secondary">
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</ol><li><a href="#File">11. File</a><ol class="nav nav-pills nav-stacked nav-secondary">
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</ol><li><a href="#Sink">12. Sink</a><ol class="nav nav-pills nav-stacked nav-secondary">
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</ol><li><a href="#CWLVersions">12. CWLVersions</a><ol class="nav nav-pills nav-stacked nav-secondary">
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</ol><li><a href="#Sink">13. Sink</a><ol class="nav nav-pills nav-stacked nav-secondary">
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</ol></li></ol></nav>
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</div>
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<em>Inherited from <a href="#Process">Process</a></em></p>
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</td></tr><tr><td><code>label</code></td><td><a href="#CWLType">null</a> | <a href="#CWLType">string</a></td><td>True</td><td><p>A short, human-readable label of this process object. <em>Inherited from <a href="#Process">Process</a></em></p>
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</td></tr><tr><td><code>description</code></td><td><a href="#CWLType">null</a> | <a href="#CWLType">string</a></td><td>True</td><td><p>A long, human-readable description of this process object. <em>Inherited from <a href="#Process">Process</a></em></p>
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</td></tr><tr><td><code>cwlVersion</code></td><td><a href="#CWLType">null</a> | <a href="#CWLType">string</a></td><td>True</td><td><p>CWL document version <em>Inherited from <a href="#Process">Process</a></em></p>
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</td></tr><tr><td><code>class</code></td><td><a href="#CWLType">string</a></td><td>True</td><td></td></tr><tr><td><code>steps</code></td><td>array&lt;<a href="#WorkflowStep">WorkflowStep</a>&gt;</td><td>True</td><td><p>The individual steps that make up the workflow. Each step is executed when all of its
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input data links are fufilled. An implementation may choose to execute
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the steps in a different order than listed and/or execute steps
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<em>Inherited from <a href="#Process">Process</a></em></p>
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</td></tr><tr><td><code>label</code></td><td><a href="#CWLType">null</a> | <a href="#CWLType">string</a></td><td>True</td><td><p>A short, human-readable label of this process object. <em>Inherited from <a href="#Process">Process</a></em></p>
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</td></tr><tr><td><code>description</code></td><td><a href="#CWLType">null</a> | <a href="#CWLType">string</a></td><td>True</td><td><p>A long, human-readable description of this process object. <em>Inherited from <a href="#Process">Process</a></em></p>
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</td></tr><tr><td><code>cwlVersion</code></td><td><a href="#CWLType">null</a> | <a href="#CWLType">string</a></td><td>True</td><td><p>CWL document version <em>Inherited from <a href="#Process">Process</a></em></p>
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</td></tr><tr><td><code>class</code></td><td><a href="#CWLType">string</a></td><td>True</td><td></td></tr><tr><td><code>baseCommand</code></td><td><a href="#CWLType">string</a> | array&lt;<a href="#CWLType">string</a>&gt;</td><td>True</td><td><p>Specifies the program to execute. If the value is an array, the first
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element is the program to execute, and subsequent elements are placed
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at the beginning of the command line in prior to any command line
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<em>Inherited from <a href="#Process">Process</a></em></p>
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</td></tr><tr><td><code>label</code></td><td><a href="#CWLType">null</a> | <a href="#CWLType">string</a></td><td>True</td><td><p>A short, human-readable label of this process object. <em>Inherited from <a href="#Process">Process</a></em></p>
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</td></tr><tr><td><code>description</code></td><td><a href="#CWLType">null</a> | <a href="#CWLType">string</a></td><td>True</td><td><p>A long, human-readable description of this process object. <em>Inherited from <a href="#Process">Process</a></em></p>
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</td></tr><tr><td><code>cwlVersion</code></td><td><a href="#CWLType">null</a> | <a href="#CWLType">string</a></td><td>True</td><td><p>CWL document version <em>Inherited from <a href="#Process">Process</a></em></p>
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</td></tr><tr><td><code>class</code></td><td><a href="#CWLType">string</a></td><td>True</td><td></td></tr><tr><td><code>expression</code></td><td><a href="#Expression">Expression</a></td><td>True</td><td><p>The expression to execute. The expression must return a JSON object which
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matches the output parameters of the ExpressionTool.</p>
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</td></tr></table><h2 id="Expression">4.4 Expression</h1><p>Define an expression that will be evaluated and used to modify the behavior
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the implementation may report a warning.</p>
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</td></tr><tr><td><code>label</code></td><td><a href="#CWLType">null</a> | <a href="#CWLType">string</a></td><td>True</td><td><p>A short, human-readable label of this process object.</p>
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</td></tr><tr><td><code>description</code></td><td><a href="#CWLType">null</a> | <a href="#CWLType">string</a></td><td>True</td><td><p>A long, human-readable description of this process object.</p>
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</td></tr><tr><td><code>cwlVersion</code></td><td><a href="#CWLType">null</a> | <a href="#CWLType">string</a></td><td>True</td><td><p>CWL document version</p>
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</td></tr></table><h2 id="Parameter">4.6.1 Parameter</h1><p>Extended by <a href="#InputParameter">InputParameter</a>, <a href="#OutputParameter">OutputParameter</a></p>
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<p>Define an input or output parameter to a process.</p>
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<h3>Fields</h3><table class="table table-striped"><tr><th>field</th><th>type</th><th>required</th><th>description</th></tr><tr><td><code>type</code></td><td><a href="#CWLType">null</a> | <a href="#CWLType">CWLType</a> | <a href="#RecordSchema">RecordSchema</a> | <a href="#EnumSchema">EnumSchema</a> | <a href="#ArraySchema">ArraySchema</a> | <a href="#CWLType">string</a> | array&lt;<a href="#CWLType">CWLType</a> | <a href="#RecordSchema">RecordSchema</a> | <a href="#EnumSchema">EnumSchema</a> | <a href="#ArraySchema">ArraySchema</a> | <a href="#CWLType">string</a>&gt;</td><td>True</td><td><p>Specify valid types of data that may be assigned to this parameter.</p>
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included when loading primary document. A file object listed in
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<code>secondaryFiles</code> may itself include <code>secondaryFiles</code> for which the same
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rules apply.</p>
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</td></tr></table><h2 id="Sink">12. Sink</h1><p>Extended by <a href="#WorkflowOutputParameter">WorkflowOutputParameter</a>, <a href="#WorkflowStepInput">WorkflowStepInput</a></p>
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</td></tr></table><h2 id="CWLVersions">12. CWLVersions</h1><p>Version symbols for published CWL document versions.</p>
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<h2 id="Sink">13. Sink</h1><p>Extended by <a href="#WorkflowOutputParameter">WorkflowOutputParameter</a>, <a href="#WorkflowStepInput">WorkflowStepInput</a></p>
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<h3>Fields</h3><table class="table table-striped"><tr><th>field</th><th>type</th><th>required</th><th>description</th></tr><tr><td><code>source</code></td><td><a href="#CWLType">null</a> | <a href="#CWLType">string</a> | array&lt;<a href="#CWLType">string</a>&gt;</td><td>True</td><td><p>Specifies one or more workflow parameters that will provide input to
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the underlying process parameter.</p>
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</td></tr><tr><td><code>linkMerge</code></td><td><a href="#CWLType">null</a> | <a href="#LinkMergeMethod">LinkMergeMethod</a></td><td>True</td><td><p>The method to use to merge multiple inbound links into a single array.

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