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SSAHA2 (Sequence Search and Alignment by Hashing Algorithm) is a pairwise sequence alignment program designed for the efficient mapping of sequencing reads onto genomic reference sequences. SSAHA2 reads of most sequencing platforms (ABI-Sanger, Roche 454, Illumina-Solexa) and a range of output formats (SAM, CIGAR, PSL etc.) are supported. A pile-up pipeline for analysis and genotype calling is available as a separate package.
homepage: http://www.sanger.ac.uk/resources/software/ssaha2/
| version | versionsuffix | toolchain |
|---|---|---|
2.5.5 |
-i686 |
system |
2.5.5 |
-x86_64 |
system |
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