diff --git a/.travis.yml b/.travis.yml
deleted file mode 100644
index 328023abbe33..000000000000
--- a/.travis.yml
+++ /dev/null
@@ -1,19 +0,0 @@
-language: ruby
-rvm:
- - 2.4.1
-
-# Assume bundler is being used, therefore
-# the `install` step will run `bundle install` by default.
-script: ./bin/cibuild
-
-env:
- global:
- - NOKOGIRI_USE_SYSTEM_LIBRARIES=true # speeds up installation of html-proofer
-
-sudo: false # route your build to the container-based infrastructure for a faster build
-
-cache: bundler # caching bundler gem packages will speed up build
-
-# Optional: disable email notifications about the outcome of your builds
-notifications:
- email: false
diff --git a/CNAME b/CNAME
new file mode 100644
index 000000000000..4b67c6f71ed5
--- /dev/null
+++ b/CNAME
@@ -0,0 +1 @@
+tedc.cc
\ No newline at end of file
diff --git a/Gemfile.lock b/Gemfile.lock
new file mode 100644
index 000000000000..f65f99c432d9
--- /dev/null
+++ b/Gemfile.lock
@@ -0,0 +1,274 @@
+GEM
+ remote: https://rubygems.org/
+ specs:
+ activesupport (4.2.11.1)
+ i18n (~> 0.7)
+ minitest (~> 5.1)
+ thread_safe (~> 0.3, >= 0.3.4)
+ tzinfo (~> 1.1)
+ addressable (2.6.0)
+ public_suffix (>= 2.0.2, < 4.0)
+ bibtex-ruby (4.4.7)
+ latex-decode (~> 0.0)
+ citeproc (1.0.9)
+ namae (~> 1.0)
+ citeproc-ruby (1.1.10)
+ citeproc (~> 1.0, >= 1.0.9)
+ csl (~> 1.5)
+ coffee-script (2.4.1)
+ coffee-script-source
+ execjs
+ coffee-script-source (1.11.1)
+ colorator (1.1.0)
+ commonmarker (0.17.13)
+ ruby-enum (~> 0.5)
+ concurrent-ruby (1.1.5)
+ csl (1.5.0)
+ namae (~> 1.0)
+ csl-styles (1.0.1.9)
+ csl (~> 1.0)
+ dnsruby (1.61.2)
+ addressable (~> 2.5)
+ em-websocket (0.5.1)
+ eventmachine (>= 0.12.9)
+ http_parser.rb (~> 0.6.0)
+ ethon (0.12.0)
+ ffi (>= 1.3.0)
+ eventmachine (1.2.7-x64-mingw32)
+ execjs (2.7.0)
+ faraday (0.15.4)
+ multipart-post (>= 1.2, < 3)
+ ffi (1.11.1-x64-mingw32)
+ forwardable-extended (2.6.0)
+ gemoji (3.0.1)
+ github-pages (198)
+ activesupport (= 4.2.11.1)
+ github-pages-health-check (= 1.16.1)
+ jekyll (= 3.8.5)
+ jekyll-avatar (= 0.6.0)
+ jekyll-coffeescript (= 1.1.1)
+ jekyll-commonmark-ghpages (= 0.1.5)
+ jekyll-default-layout (= 0.1.4)
+ jekyll-feed (= 0.11.0)
+ jekyll-gist (= 1.5.0)
+ jekyll-github-metadata (= 2.12.1)
+ jekyll-mentions (= 1.4.1)
+ jekyll-optional-front-matter (= 0.3.0)
+ jekyll-paginate (= 1.1.0)
+ jekyll-readme-index (= 0.2.0)
+ jekyll-redirect-from (= 0.14.0)
+ jekyll-relative-links (= 0.6.0)
+ jekyll-remote-theme (= 0.3.1)
+ jekyll-sass-converter (= 1.5.2)
+ jekyll-seo-tag (= 2.5.0)
+ jekyll-sitemap (= 1.2.0)
+ jekyll-swiss (= 0.4.0)
+ jekyll-theme-architect (= 0.1.1)
+ jekyll-theme-cayman (= 0.1.1)
+ jekyll-theme-dinky (= 0.1.1)
+ jekyll-theme-hacker (= 0.1.1)
+ jekyll-theme-leap-day (= 0.1.1)
+ jekyll-theme-merlot (= 0.1.1)
+ jekyll-theme-midnight (= 0.1.1)
+ jekyll-theme-minimal (= 0.1.1)
+ jekyll-theme-modernist (= 0.1.1)
+ jekyll-theme-primer (= 0.5.3)
+ jekyll-theme-slate (= 0.1.1)
+ jekyll-theme-tactile (= 0.1.1)
+ jekyll-theme-time-machine (= 0.1.1)
+ jekyll-titles-from-headings (= 0.5.1)
+ jemoji (= 0.10.2)
+ kramdown (= 1.17.0)
+ liquid (= 4.0.0)
+ listen (= 3.1.5)
+ mercenary (~> 0.3)
+ minima (= 2.5.0)
+ nokogiri (>= 1.8.5, < 2.0)
+ rouge (= 2.2.1)
+ terminal-table (~> 1.4)
+ github-pages-health-check (1.16.1)
+ addressable (~> 2.3)
+ dnsruby (~> 1.60)
+ octokit (~> 4.0)
+ public_suffix (~> 3.0)
+ typhoeus (~> 1.3)
+ html-pipeline (2.11.0)
+ activesupport (>= 2)
+ nokogiri (>= 1.4)
+ http_parser.rb (0.6.0)
+ i18n (0.9.5)
+ concurrent-ruby (~> 1.0)
+ jekyll (3.8.5)
+ addressable (~> 2.4)
+ colorator (~> 1.0)
+ em-websocket (~> 0.5)
+ i18n (~> 0.7)
+ jekyll-sass-converter (~> 1.0)
+ jekyll-watch (~> 2.0)
+ kramdown (~> 1.14)
+ liquid (~> 4.0)
+ mercenary (~> 0.3.3)
+ pathutil (~> 0.9)
+ rouge (>= 1.7, < 4)
+ safe_yaml (~> 1.0)
+ jekyll-avatar (0.6.0)
+ jekyll (~> 3.0)
+ jekyll-coffeescript (1.1.1)
+ coffee-script (~> 2.2)
+ coffee-script-source (~> 1.11.1)
+ jekyll-commonmark (1.3.1)
+ commonmarker (~> 0.14)
+ jekyll (>= 3.7, < 5.0)
+ jekyll-commonmark-ghpages (0.1.5)
+ commonmarker (~> 0.17.6)
+ jekyll-commonmark (~> 1)
+ rouge (~> 2)
+ jekyll-default-layout (0.1.4)
+ jekyll (~> 3.0)
+ jekyll-email-protect (1.1.0)
+ jekyll-feed (0.11.0)
+ jekyll (~> 3.3)
+ jekyll-gist (1.5.0)
+ octokit (~> 4.2)
+ jekyll-github-metadata (2.12.1)
+ jekyll (~> 3.4)
+ octokit (~> 4.0, != 4.4.0)
+ jekyll-mentions (1.4.1)
+ html-pipeline (~> 2.3)
+ jekyll (~> 3.0)
+ jekyll-optional-front-matter (0.3.0)
+ jekyll (~> 3.0)
+ jekyll-paginate (1.1.0)
+ jekyll-readme-index (0.2.0)
+ jekyll (~> 3.0)
+ jekyll-redirect-from (0.14.0)
+ jekyll (~> 3.3)
+ jekyll-relative-links (0.6.0)
+ jekyll (~> 3.3)
+ jekyll-remote-theme (0.3.1)
+ jekyll (~> 3.5)
+ rubyzip (>= 1.2.1, < 3.0)
+ jekyll-sass-converter (1.5.2)
+ sass (~> 3.4)
+ jekyll-scholar (5.14.1)
+ bibtex-ruby (~> 4.0, >= 4.0.13)
+ citeproc-ruby (~> 1.0)
+ csl-styles (~> 1.0)
+ jekyll (~> 3.0)
+ jekyll-seo-tag (2.5.0)
+ jekyll (~> 3.3)
+ jekyll-sitemap (1.2.0)
+ jekyll (~> 3.3)
+ jekyll-swiss (0.4.0)
+ jekyll-theme-architect (0.1.1)
+ jekyll (~> 3.5)
+ jekyll-seo-tag (~> 2.0)
+ jekyll-theme-cayman (0.1.1)
+ jekyll (~> 3.5)
+ jekyll-seo-tag (~> 2.0)
+ jekyll-theme-dinky (0.1.1)
+ jekyll (~> 3.5)
+ jekyll-seo-tag (~> 2.0)
+ jekyll-theme-hacker (0.1.1)
+ jekyll (~> 3.5)
+ jekyll-seo-tag (~> 2.0)
+ jekyll-theme-leap-day (0.1.1)
+ jekyll (~> 3.5)
+ jekyll-seo-tag (~> 2.0)
+ jekyll-theme-merlot (0.1.1)
+ jekyll (~> 3.5)
+ jekyll-seo-tag (~> 2.0)
+ jekyll-theme-midnight (0.1.1)
+ jekyll (~> 3.5)
+ jekyll-seo-tag (~> 2.0)
+ jekyll-theme-minimal (0.1.1)
+ jekyll (~> 3.5)
+ jekyll-seo-tag (~> 2.0)
+ jekyll-theme-modernist (0.1.1)
+ jekyll (~> 3.5)
+ jekyll-seo-tag (~> 2.0)
+ jekyll-theme-primer (0.5.3)
+ jekyll (~> 3.5)
+ jekyll-github-metadata (~> 2.9)
+ jekyll-seo-tag (~> 2.0)
+ jekyll-theme-slate (0.1.1)
+ jekyll (~> 3.5)
+ jekyll-seo-tag (~> 2.0)
+ jekyll-theme-tactile (0.1.1)
+ jekyll (~> 3.5)
+ jekyll-seo-tag (~> 2.0)
+ jekyll-theme-time-machine (0.1.1)
+ jekyll (~> 3.5)
+ jekyll-seo-tag (~> 2.0)
+ jekyll-titles-from-headings (0.5.1)
+ jekyll (~> 3.3)
+ jekyll-watch (2.2.1)
+ listen (~> 3.0)
+ jemoji (0.10.2)
+ gemoji (~> 3.0)
+ html-pipeline (~> 2.2)
+ jekyll (~> 3.0)
+ kramdown (1.17.0)
+ latex-decode (0.3.1)
+ liquid (4.0.0)
+ listen (3.1.5)
+ rb-fsevent (~> 0.9, >= 0.9.4)
+ rb-inotify (~> 0.9, >= 0.9.7)
+ ruby_dep (~> 1.2)
+ mercenary (0.3.6)
+ mini_portile2 (2.4.0)
+ minima (2.5.0)
+ jekyll (~> 3.5)
+ jekyll-feed (~> 0.9)
+ jekyll-seo-tag (~> 2.1)
+ minitest (5.11.3)
+ multipart-post (2.1.1)
+ namae (1.0.1)
+ nokogiri (1.10.3-x64-mingw32)
+ mini_portile2 (~> 2.4.0)
+ octokit (4.14.0)
+ sawyer (~> 0.8.0, >= 0.5.3)
+ pathutil (0.16.2)
+ forwardable-extended (~> 2.6)
+ public_suffix (3.1.0)
+ rb-fsevent (0.10.3)
+ rb-inotify (0.10.0)
+ ffi (~> 1.0)
+ rouge (2.2.1)
+ ruby-enum (0.7.2)
+ i18n
+ ruby_dep (1.5.0)
+ rubyzip (1.2.3)
+ safe_yaml (1.0.5)
+ sass (3.7.4)
+ sass-listen (~> 4.0.0)
+ sass-listen (4.0.0)
+ rb-fsevent (~> 0.9, >= 0.9.4)
+ rb-inotify (~> 0.9, >= 0.9.7)
+ sawyer (0.8.2)
+ addressable (>= 2.3.5)
+ faraday (> 0.8, < 2.0)
+ terminal-table (1.8.0)
+ unicode-display_width (~> 1.1, >= 1.1.1)
+ thread_safe (0.3.6)
+ typhoeus (1.3.1)
+ ethon (>= 0.9.0)
+ tzinfo (1.2.5)
+ thread_safe (~> 0.1)
+ unicode-display_width (1.6.0)
+ unicode_utils (1.4.0)
+
+PLATFORMS
+ x64-mingw32
+
+DEPENDENCIES
+ github-pages
+ jekyll
+ jekyll-email-protect
+ jekyll-paginate
+ jekyll-scholar
+ jemoji
+ unicode_utils
+
+BUNDLED WITH
+ 1.16.2
diff --git a/_bibliography/papers.bib b/_bibliography/papers.bib
deleted file mode 100644
index eb9851e3a789..000000000000
--- a/_bibliography/papers.bib
+++ /dev/null
@@ -1,64 +0,0 @@
----
----
-
-@string{aps = {American Physical Society,}}
-
-@book{einstein1956investigations,
- title={Investigations on the Theory of the Brownian Movement},
- author={Einstein, Albert},
- year={1956},
- publisher={Courier Corporation,}
-}
-
-@article{einstein1950meaning,
- title={The meaning of relativity},
- author={Einstein, Albert and Taub, AH},
- journal={American Journal of Physics,},
- volume={18},
- number={6},
- pages={403--404},
- year={1950},
- publisher={American Association of Physics Teachers,}
-}
-
-@article{PhysRev.47.777,
- title={Can Quantum-Mechanical Description of Physical Reality Be Considered Complete?},
- author={Einstein, A. and Podolsky, B. and Rosen, N.},
- abstract={In a complete theory there is an element corresponding to each element of reality. A sufficient condition for the reality of a physical quantity is the possibility of predicting it with certainty, without disturbing the system. In quantum mechanics in the case of two physical quantities described by non-commuting operators, the knowledge of one precludes the knowledge of the other. Then either (1) the description of reality given by the wave function in quantum mechanics is not complete or (2) these two quantities cannot have simultaneous reality. Consideration of the problem of making predictions concerning a system on the basis of measurements made on another system that had previously interacted with it leads to the result that if (1) is false then (2) is also false. One is thus led to conclude that the description of reality as given by a wave function is not complete.},
- journal={Phys. Rev.,},
- volume={47},
- issue={10},
- pages={777--780},
- numpages={0},
- year={1935},
- month={May},
- publisher=aps,
- doi={10.1103/PhysRev.47.777},
- url={http://link.aps.org/doi/10.1103/PhysRev.47.777}
-}
-
-@article{einstein1905molekularkinetischen,
- title={{\"U}ber die von der molekularkinetischen Theorie der W{\"a}rme geforderte Bewegung von in ruhenden Fl{\"u}ssigkeiten suspendierten Teilchen},
- author={Einstein, A.},
- journal={Annalen der physik,},
- volume={322},
- number={8},
- pages={549--560},
- year={1905},
- publisher={Wiley Online Library}
-}
-
-@article{einstein1905movement,
- title={Un the movement of small particles suspended in statiunary liquids required by the molecular-kinetic theory 0f heat},
- author={Einstein, A.},
- journal={Ann. Phys.,},
- volume={17},
- pages={549--560},
- year={1905}
-}
-
-@article{einstein1905electrodynamics,
- title={On the electrodynamics of moving bodies},
- author={Einstein, A.},
- year={1905}
-}
diff --git a/_config.yml b/_config.yml
deleted file mode 100644
index 0a861311b2fc..000000000000
--- a/_config.yml
+++ /dev/null
@@ -1,117 +0,0 @@
-# -----------------------------------------------------------------------------
-# Site settings
-# -----------------------------------------------------------------------------
-name: Your Name
-email: you@example.com
-description: > # this means to ignore newlines until "url:"
- A simple, whitespace theme for academics. Based on [*folio](https://github.com/bogoli/-folio) design.
-footer_text: >
- Powered by Jekyll with al-folio theme.
- Hosted by GitHub Pages .
- Photos from Unsplash .
-
-url: # the base hostname & protocol for your site
-baseurl: /al-folio # the subpath of your site, e.g. /blog/
-last_updated: # leave blank if you don't want to display last updated
-
-# -----------------------------------------------------------------------------
-# Social integration
-# -----------------------------------------------------------------------------
-github_username: # your GitHub user name
-twitter_username: # your Twitter handle
-linkedin_username: # your LinkedIn user name
-scholar_userid: # your Google Scholar ID
-orcid_id: # your ORCID ID
-contact_note: >
- You can even add a little note about which of these is the best way to reach you.
-
-google_analytics: UA-XXXXXXXXX # out your google-analytics code
-
-# -----------------------------------------------------------------------------
-# Blog
-# -----------------------------------------------------------------------------
-blog_name: al-folio
-blog_description: a simple whitespace theme for academics
-
-# Pagination
-paginate: 4
-permalink: /blog/:year/:title/
-paginate_path: /blog/page:num/
-
-text:
- pagination:
- newer: 'Newer'
- older: 'Older'
-
-# Comments
-disqus_shortname: al-folio # put your disqus shortname
-
-# Optional features
-show_social_icons: false
-enable_anchorjs: false
-enable_katex: true
-
-# -----------------------------------------------------------------------------
-# Collections
-# -----------------------------------------------------------------------------
-collections:
- news:
- defaults:
- layout: post
- output: true
- permalink: /news/:path/
- projects:
- output: true
- permalink: /projects/:path/
-
-news_limit: 5
-
-# -----------------------------------------------------------------------------
-# Jekyll settings
-# -----------------------------------------------------------------------------
-
-# Build settings
-markdown: kramdown
-highlighter: pygments
-
-# Includes & excludes
-include: ['_pages']
-exclude: [vendor]
-
-# Plug-ins
-plugins:
- - jekyll-email-protect
- - jekyll-paginate
- - jekyll/scholar
- - jemoji
-
-# Jekyll-Scholar
-scholar:
-
- last_name: Einstein
-
- style: apa
- locale: en
-
- sort_by: year
- order: descending
-
- source: /_bibliography/
- bibliography: papers.bib
- bibliography_template: bib
-
- replace_strings: true
- join_strings: true
-
- details_dir: bibliography
- details_layout: bibtex.html
- details_link: Details
-
- query: "@*"
-
-# -----------------------------------------------------------------------------
-# Other settings
-# -----------------------------------------------------------------------------
-jquery_version: "1.12.4"
-katex_version: "0.9.0"
-anchorjs_version: "3.2.2"
diff --git a/_data/coauthors.yml b/_data/coauthors.yml
deleted file mode 100644
index 21ed65ba742e..000000000000
--- a/_data/coauthors.yml
+++ /dev/null
@@ -1,8 +0,0 @@
-Adams:
- url: https://en.wikipedia.org/wiki/Edwin_Plimpton_Adams
-
-Podolsky:
- url: https://en.wikipedia.org/wiki/Boris_Podolsky
-
-Rosen:
- url: https://en.wikipedia.org/wiki/Nathan_Rosen
diff --git a/_includes/footer.html b/_includes/footer.html
deleted file mode 100644
index 58f34aceba12..000000000000
--- a/_includes/footer.html
+++ /dev/null
@@ -1,11 +0,0 @@
-
diff --git a/_includes/head.html b/_includes/head.html
deleted file mode 100644
index 81df8e2fa770..000000000000
--- a/_includes/head.html
+++ /dev/null
@@ -1,13 +0,0 @@
-
- {{ site.name }}{% if page.title and page.url != "/" %} | {{ page.title }}{% endif %}
-
-
news
- {% if site.news %}
-
- {% assign news = site.news | reverse %}
- {% for item in news limit: site.news_limit %}
-
- {{ item.date | date: "%b %-d, %Y" }}
-
- {% if item.inline %}
- {{ item.content | remove: '' | remove: '
' | emojify }}
- {% else %}
- {{ item.title }}
- {% endif %}
-
-
- {% endfor %}
-
- {% else %}
-
No news so far...
- {% endif %}
-
-
-
-
-
- {{ site.contact_note }}
-
-
- {% if page.profile.image %}
-
- {% endif %}
- {% if page.profile.address %}
-
- {{ page.profile.address }}
-
- {% endif %}
-
[{{entry.abbr}} ]
- {% else %}
- [{{entry.abbr}}]
- {% endif %}
-{% endif %}
-
-
- {% if entry.type == "thesis" %}
- {{reference}}
- {% else %}
-
{{entry.title}}
-
- {% for author in entry.author_array %}
- {% unless forloop.last %}
- {% if author.last == site.scholar.last_name %}
- {{author.last}}, {{author.first}} ,
- {% else %}
- {% if site.data.coauthors[author.last] %}
- {{author.last}}, {{author.first}} ,
- {% else %}
- {{author.last}}, {{author.first}},
- {% endif %}
- {% endif %}
- {% else %}
- and
- {% if author.last == site.scholar.last_name %}
- {{author.last}}, {{author.first}}
- {% else %}
- {% if site.data.coauthors[author.last] %}
- {{author.last}}, {{author.first}}
- {% else %}
- {{author.last}}, {{author.first}}
- {% endif %}
- {% endif %}
- {% endunless %}
- {% endfor %}
-
-
-
- {% if entry.type == "article" %}
- {{entry.journal}}
- {% elsif entry.type == "inproceedings" %}
- In {{entry.booktitle}}
- {% endif %}
- {% if entry.year %}
- {{entry.year}}
- {% endif %}
-
- {% endif %}
-
-
- {% if entry.abstract %}
- [Abs ]
- {% endif %}
- {% if entry.arxiv %}
- [arXiv ]
- {% endif %}
- {% if entry.html %}
- [HTML ]
- {% endif %}
- {% if entry.pdf %}
- [PDF ]
- {% endif %}
- {% if entry.supp %}
- [Supp ]
- {% endif %}
- {% if entry.poster %}
- [Poster ]
- {% endif %}
- {% if entry.slides %}
- [Slides ]
- {% endif %}
- {% if entry.code %}
- [Code ]
- {% endif %}
-
-
-
- {% if entry.abstract %}
-
- {{ entry.abstract }}
-
- {% endif %}
-
-
-
-
-
- {{ content }}
-
-
- {% if page.news %}
- {% include news.html %}
- {% endif %}
-
- {% if page.social %}
- {% include social.html %}
- {% endif %}
-
-
-
-
-
-
- {{ content }}
-
-
- {% if site.disqus_shortname and page.comments %}
-
-
-
Please enable JavaScript to view the comments powered by Disqus.
- {% endif %}
-
-
Pinterest DIY authentic Schlitz, hoodie Intelligentsia butcher trust fund brunch shabby chic Kickstarter forage flexitarian. Direct trade cold-pressed meggings stumptown plaid, pop-up taxidermy. Hoodie XOXO fingerstache scenester Echo Park. Plaid ugh Wes Anderson, freegan pug selvage fanny pack leggings pickled food truck DIY irony Banksy.
-
-#### Hipster list
-
- brunch
- fixie
- raybans
- messenger bag
-
-
-Hoodie Thundercats retro, tote bag 8-bit Godard craft beer gastropub. Truffaut Tumblr taxidermy, raw denim Kickstarter sartorial dreamcatcher. Quinoa chambray slow-carb salvia readymade, bicycle rights 90's yr typewriter selfies letterpress cardigan vegan.
-
-***
-
-Pug heirloom High Life vinyl swag, single-origin coffee four dollar toast taxidermy reprehenderit fap distillery master cleanse locavore. Est anim sapiente leggings Brooklyn ea. Thundercats locavore excepteur veniam eiusmod. Raw denim Truffaut Schlitz, migas sapiente Portland VHS twee Bushwick Marfa typewriter retro id keytar.
-
-> We do not grow absolutely, chronologically. We grow sometimes in one dimension, and not in another, unevenly. We grow partially. We are relative. We are mature in one realm, childish in another.
-> —Anais Nin
-
-Fap aliqua qui, scenester pug Echo Park polaroid irony shabby chic ex cardigan church-key Odd Future accusamus. Blog stumptown sartorial squid, gastropub duis aesthetic Truffaut vero. Pinterest tilde twee, odio mumblecore jean shorts lumbersexual.
diff --git a/_news/announcement_3.md b/_news/announcement_3.md
deleted file mode 100644
index d90721915e94..000000000000
--- a/_news/announcement_3.md
+++ /dev/null
@@ -1,7 +0,0 @@
----
-layout: post
-date: 2016-01-15 07:59:00-0400
-inline: true
----
-
-A simple inline announcement with Markdown emoji! :sparkles: :smile:
diff --git a/_pages/about.md b/_pages/about.md
deleted file mode 100644
index f584b2c148b4..000000000000
--- a/_pages/about.md
+++ /dev/null
@@ -1,23 +0,0 @@
----
-layout: about
-permalink: /
-title: Your Name
-description: Affiliations . Address. Contacts. Moto. Etc.
-
-profile:
- align: right
- image: prof_pic.jpg
- address: >
- 555 your office number
- 123 your address street
- Your City, State 12345
-
-news: true
-social: true
----
-
-Write your biography here. Tell the world about yourself. Link to your favorite [subreddit](http://reddit.com){:target="\_blank"}. You can put a picture in, too. The code is already in, just name your picture `prof_pic.jpg` and put it in the `img/` folder.
-
-Put your address / P.O. box / other info right below your picture. You can also disable any these elements by editing `profile` property of the YAML header of your `_pages/about.md`. Edit `_bibliography/papers.bib` and Jekyll will render your [publications page](/al-folio/publications/) automatically.
-
-Link to your social media connections, too. This theme is set up to use [Font Awesome icons](http://fortawesome.github.io/Font-Awesome/){:target="\_blank"} and [Academicons](https://jpswalsh.github.io/academicons/){:target="\_blank"}, like the ones below. Add your Facebook, Twitter, LinkedIn, Google Scholar, or just disable all of them.
diff --git a/_pages/projects.md b/_pages/projects.md
deleted file mode 100644
index 06a24cb66583..000000000000
--- a/_pages/projects.md
+++ /dev/null
@@ -1,48 +0,0 @@
----
-layout: page
-title: projects
-permalink: /projects/
-description: A growing collection of your cool projects.
----
-
-{% for project in site.projects %}
-
-{% if project.redirect %}
-
-{% else %}
-
-
-
-{% endif %}
-
-{% endfor %}
diff --git a/_pages/publications.md b/_pages/publications.md
deleted file mode 100644
index ef735790143c..000000000000
--- a/_pages/publications.md
+++ /dev/null
@@ -1,12 +0,0 @@
----
-layout: page
-permalink: /publications/
-title: publications
-description: Publications by categories in reversed chronological order. Generated by jekyll-scholar.
-years: [1956, 1950, 1935, 1905]
----
-
-{% for y in page.years %}
- {{y}}
- {% bibliography -f papers -q @*[year={{y}}]* %}
-{% endfor %}
diff --git a/_pages/teaching.md b/_pages/teaching.md
deleted file mode 100644
index 5a0c17f5c97a..000000000000
--- a/_pages/teaching.md
+++ /dev/null
@@ -1,10 +0,0 @@
----
-layout: page
-permalink: /teaching/
-title: teaching
-description: Materials for courses you taught. Replace this text with your description.
----
-
-For now, this page is assumed to be a static description of your courses. You can convert it to a collection similar to `_projects/` so that you can have a dedicated page for each course.
-
-Organize your courses by years, topics, or universities, however you like!
diff --git a/_posts/2015-03-15-formatting-and-links.markdown b/_posts/2015-03-15-formatting-and-links.markdown
deleted file mode 100644
index 82a989ac974d..000000000000
--- a/_posts/2015-03-15-formatting-and-links.markdown
+++ /dev/null
@@ -1,28 +0,0 @@
----
-layout: post
-title: a post with formatting and links
-date: 2015-03-15 16:40:16
-description: march & april, looking forward to summer
----
-Jean shorts raw denim Vice normcore, art party High Life PBR skateboard stumptown vinyl kitsch. Four loko meh 8-bit, tousled banh mi tilde forage Schlitz dreamcatcher twee 3 wolf moon. Chambray asymmetrical paleo salvia, sartorial umami four loko master cleanse drinking vinegar brunch. Pinterest DIY authentic Schlitz, hoodie Intelligentsia butcher trust fund brunch shabby chic Kickstarter forage flexitarian. Direct trade cold-pressed meggings stumptown plaid, pop-up taxidermy. Hoodie XOXO fingerstache scenester Echo Park. Plaid ugh Wes Anderson, freegan pug selvage fanny pack leggings pickled food truck DIY irony Banksy.
-
-#### Hipster list
-
- brunch
- fixie
- raybans
- messenger bag
-
-
-Hoodie Thundercats retro, tote bag 8-bit Godard craft beer gastropub. Truffaut Tumblr taxidermy, raw denim Kickstarter sartorial dreamcatcher. Quinoa chambray slow-carb salvia readymade, bicycle rights 90's yr typewriter selfies letterpress cardigan vegan.
-
-
- We do not grow absolutely, chronologically. We grow sometimes in one dimension, and not in another, unevenly. We grow partially. We are relative. We are mature in one realm, childish in another.
- —Anais Nin
-
-
-Fap aliqua qui, scenester pug Echo Park polaroid irony shabby chic ex cardigan church-key Odd Future accusamus. Blog stumptown sartorial squid, gastropub duis aesthetic Truffaut vero. Pinterest tilde twee, odio mumblecore jean shorts lumbersexual.
diff --git a/_posts/2015-05-15-images.markdown b/_posts/2015-05-15-images.markdown
deleted file mode 100644
index c917462fa308..000000000000
--- a/_posts/2015-05-15-images.markdown
+++ /dev/null
@@ -1,30 +0,0 @@
----
-layout: post
-title: a post with images
-date: 2015-05-15 21:01:00
-description: this is what included images could look like
----
-Jean shorts raw denim Vice normcore, art party High Life PBR skateboard stumptown vinyl kitsch. Fingerstache four loko meh 8-bit, tousled banh mi tilde forage Schlitz dreamcatcher twee 3 wolf moon. Chambray asymmetrical paleo salvia, sartorial umami four loko master cleanse drinking vinegar brunch.
-
-
-
-
-
-
- A simple, elegant caption looks good between image rows, after each row, or doesn't have to be there at all.
-
-
-
-
-
- Caption photos easily. On the left, a road goes through a tunnel. Middle, leaves artistically fall in a hipster photoshoot. Right, in another hipster photoshoot, a lumberjack grasps a handful of pine needles.
-
-
-
-
- This image can also have a caption. It's like magic.
-
-
-You can also put regular text between your rows of images. Say you wanted to write a little bit about your project before you posted the rest of the images. You describe how you toiled, sweated, *bled* for your project, and then.... you reveal it's glory in the next row of images.
-
-
-
-
-
-
- You can also have artistically styled 2/3 + 1/3 images, like these.
-
-
-
-
-
-
-
- Caption photos easily. On the left, a road goes through a tunnel. Middle, leaves artistically fall in a hipster photoshoot. Right, in another hipster photoshoot, a lumberjack grasps a handful of pine needles.
-
-
-
-
- This image can also have a caption. It's like magic.
-
-
-You can also put regular text between your rows of images. Say you wanted to write a little bit about your project before you posted the rest of the images. You describe how you toiled, sweated, *bled* for your project, and then.... you reveal it's glory in the next row of images.
-
-
-
-
-
-
- You can also have artistically styled 2/3 + 1/3 images, like these.
-
-
-
-
-
-
-
- Caption photos easily. On the left, a road goes through a tunnel. Middle, leaves artistically fall in a hipster photoshoot. Right, in another hipster photoshoot, a lumberjack grasps a handful of pine needles.
-
-
-
-
- This image can also have a caption. It's like magic.
-
-
-You can also put regular text between your rows of images. Say you wanted to write a little bit about your project before you posted the rest of the images. You describe how you toiled, sweated, *bled* for your project, and then.... you reveal it's glory in the next row of images.
-
-
-
-
-
-
- You can also have artistically styled 2/3 + 1/3 images, like these.
-
-
-
-
-
-
-
- Caption photos easily. On the left, a road goes through a tunnel. Middle, leaves artistically fall in a hipster photoshoot. Right, in another hipster photoshoot, a lumberjack grasps a handful of pine needles.
-
-
-
-
- This image can also have a caption. It's like magic.
-
-
-You can also put regular text between your rows of images. Say you wanted to write a little bit about your project before you posted the rest of the images. You describe how you toiled, sweated, *bled* for your project, and then.... you reveal it's glory in the next row of images.
-
-
-
-
-
-
- You can also have artistically styled 2/3 + 1/3 images, like these.
-
-
-
-
-
-
-
- Caption photos easily. On the left, a road goes through a tunnel. Middle, leaves artistically fall in a hipster photoshoot. Right, in another hipster photoshoot, a lumberjack grasps a handful of pine needles.
-
-
-
-
- This image can also have a caption. It's like magic.
-
-
-You can also put regular text between your rows of images. Say you wanted to write a little bit about your project before you posted the rest of the images. You describe how you toiled, sweated, *bled* for your project, and then.... you reveal it's glory in the next row of images.
-
-
-
-
-
-
- You can also have artistically styled 2/3 + 1/3 images, like these.
-
-
-
-
-
-
-
- Caption photos easily. On the left, a road goes through a tunnel. Middle, leaves artistically fall in a hipster photoshoot. Right, in another hipster photoshoot, a lumberjack grasps a handful of pine needles.
-
-
-
-
- This image can also have a caption. It's like magic.
-
-
-You can also put regular text between your rows of images. Say you wanted to write a little bit about your project before you posted the rest of the images. You describe how you toiled, sweated, *bled* for your project, and then.... you reveal it's glory in the next row of images.
-
-
-
-
-
-
- You can also have artistically styled 2/3 + 1/3 images, like these.
-
-
-
-
-
-
-
Ted Cybulski
+
- {% for post in paginator.posts %}
-
-
- {{ post.date | date: '%B %-d, %Y — %H:%M' }}
- {{ post.description }}
-
- {% endfor %}
-
-
-{% include pagination.html %}
diff --git a/index.html b/index.html
new file mode 100644
index 000000000000..abf8bb2b427a
--- /dev/null
+++ b/index.html
@@ -0,0 +1,177 @@
+
+
+
+
+ Ted Cybulski
+
+
+
+
+
+
+
+
+
+
+
+
+
+
I am a physician-scientist interested in computational and informatics approaches to medicine, in particular investigating the temporal dynamics of complex, multidimensional systems. Formerly of Sharp Lab at MIT, and Kording Lab and Tyo Lab at Northwestern University.
+
+I am currently a Pulmonary and Critical Care Medicine fellow, and a member of Northwestern's Physician Scientist Training Program .
+
+
+ MD - Northwestern University, 2019
+ PhD (Neuroscience) - Northwestern University, 2017
+ SB (Biological Engineering) - MIT, 2010
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
Ted Cybulski | Announcement_3
+
+
+
+
+
+
+
+ A simple inline announcement with Markdown emoji!
+
+
+
+
+
+
+
+
+
Ted Cybulski | Project 1
+
+
+
+
+
+
+
+ Every project has a beautiful feature shocase page. It’s easy to include images, in a flexible 3-column grid format. Make your photos 1/3, 2/3, or full width.
+
+To give your project a background in the portfolio page, just add the img tag to the front matter like so:
+
+---
+layout: page
+title: Project
+description: a project with a background image
+img: /assets/img/12.jpg
+---
+
+ Caption photos easily. On the left, a road goes through a tunnel. Middle, leaves artistically fall in a hipster photoshoot. Right, in another hipster photoshoot, a lumberjack grasps a handful of pine needles.
+
+
+
+
+ This image can also have a caption. It's like magic.
+
+
+You can also put regular text between your rows of images. Say you wanted to write a little bit about your project before you posted the rest of the images. You describe how you toiled, sweated, bled for your project, and then…. you reveal it’s glory in the next row of images.
+
+
+
+
+
+ You can also have artistically styled 2/3 + 1/3 images, like these.
+
+
+
+
+The code is simple. Just add a col class to your image, and another class specifying the width: one, two, or three columns wide. Here’s the code for the last row of images above:
+
+
+
+
+
+
+
+
+
+
+
+
+
+
Ted Cybulski | Project 2
+
+
+
+
+
+
+
+ Every project has a beautiful feature shocase page. It’s easy to include images, in a flexible 3-column grid format. Make your photos 1/3, 2/3, or full width.
+
+To give your project a background in the portfolio page, just add the img tag to the front matter like so:
+
+---
+layout: page
+title: Project
+description: a project with a background image
+img: /assets/img/12.jpg
+---
+
+ Caption photos easily. On the left, a road goes through a tunnel. Middle, leaves artistically fall in a hipster photoshoot. Right, in another hipster photoshoot, a lumberjack grasps a handful of pine needles.
+
+
+
+
+ This image can also have a caption. It's like magic.
+
+
+You can also put regular text between your rows of images. Say you wanted to write a little bit about your project before you posted the rest of the images. You describe how you toiled, sweated, bled for your project, and then…. you reveal it’s glory in the next row of images.
+
+
+
+
+
+ You can also have artistically styled 2/3 + 1/3 images, like these.
+
+
+
+
+The code is simple. Just add a col class to your image, and another class specifying the width: one, two, or three columns wide. Here’s the code for the last row of images above:
+
+
+
+
+
+
+
+
+
+
+
+
+
+
Ted Cybulski | Project 3
+
+
+
+
+
+
+
+ Every project has a beautiful feature shocase page. It’s easy to include images, in a flexible 3-column grid format. Make your photos 1/3, 2/3, or full width.
+
+To give your project a background in the portfolio page, just add the img tag to the front matter like so:
+
+---
+layout: page
+title: Project
+description: a project with a background image
+img: /assets/img/12.jpg
+---
+
+ Caption photos easily. On the left, a road goes through a tunnel. Middle, leaves artistically fall in a hipster photoshoot. Right, in another hipster photoshoot, a lumberjack grasps a handful of pine needles.
+
+
+
+
+ This image can also have a caption. It's like magic.
+
+
+You can also put regular text between your rows of images. Say you wanted to write a little bit about your project before you posted the rest of the images. You describe how you toiled, sweated, bled for your project, and then…. you reveal it’s glory in the next row of images.
+
+
+
+
+
+ You can also have artistically styled 2/3 + 1/3 images, like these.
+
+
+
+
+The code is simple. Just add a col class to your image, and another class specifying the width: one, two, or three columns wide. Here’s the code for the last row of images above:
+
+
+
+
+
+
+
+
+
+
+
+
+
+
Ted Cybulski | Project 4
+
+
+
+
+
+
+
+ Every project has a beautiful feature shocase page. It’s easy to include images, in a flexible 3-column grid format. Make your photos 1/3, 2/3, or full width.
+
+To give your project a background in the portfolio page, just add the img tag to the front matter like so:
+
+---
+layout: page
+title: Project
+description: a project with a background image
+img: /assets/img/12.jpg
+---
+
+ Caption photos easily. On the left, a road goes through a tunnel. Middle, leaves artistically fall in a hipster photoshoot. Right, in another hipster photoshoot, a lumberjack grasps a handful of pine needles.
+
+
+
+
+ This image can also have a caption. It's like magic.
+
+
+You can also put regular text between your rows of images. Say you wanted to write a little bit about your project before you posted the rest of the images. You describe how you toiled, sweated, bled for your project, and then…. you reveal it’s glory in the next row of images.
+
+
+
+
+
+ You can also have artistically styled 2/3 + 1/3 images, like these.
+
+
+
+
+The code is simple. Just add a col class to your image, and another class specifying the width: one, two, or three columns wide. Here’s the code for the last row of images above:
+
+
+
+
+
+
+
+
+
+
+
+
+
+
Ted Cybulski | Project 5
+
+
+
+
+
+
+
+ Every project has a beautiful feature shocase page. It’s easy to include images, in a flexible 3-column grid format. Make your photos 1/3, 2/3, or full width.
+
+To give your project a background in the portfolio page, just add the img tag to the front matter like so:
+
+---
+layout: page
+title: Project
+description: a project with a background image
+img: /assets/img/12.jpg
+---
+
+ Caption photos easily. On the left, a road goes through a tunnel. Middle, leaves artistically fall in a hipster photoshoot. Right, in another hipster photoshoot, a lumberjack grasps a handful of pine needles.
+
+
+
+
+ This image can also have a caption. It's like magic.
+
+
+You can also put regular text between your rows of images. Say you wanted to write a little bit about your project before you posted the rest of the images. You describe how you toiled, sweated, bled for your project, and then…. you reveal it’s glory in the next row of images.
+
+
+
+
+
+ You can also have artistically styled 2/3 + 1/3 images, like these.
+
+
+
+
+The code is simple. Just add a col class to your image, and another class specifying the width: one, two, or three columns wide. Here’s the code for the last row of images above:
+
+
+
+
+
+
+
+
+
+
+
+
+
+
Ted Cybulski | Project 6
+
+
+
+
+
+
+
+ Every project has a beautiful feature shocase page. It’s easy to include images, in a flexible 3-column grid format. Make your photos 1/3, 2/3, or full width.
+
+To give your project a background in the portfolio page, just add the img tag to the front matter like so:
+
+---
+layout: page
+title: Project
+description: a project with a background image
+img: /assets/img/12.jpg
+---
+
+ Caption photos easily. On the left, a road goes through a tunnel. Middle, leaves artistically fall in a hipster photoshoot. Right, in another hipster photoshoot, a lumberjack grasps a handful of pine needles.
+
+
+
+
+ This image can also have a caption. It's like magic.
+
+
+You can also put regular text between your rows of images. Say you wanted to write a little bit about your project before you posted the rest of the images. You describe how you toiled, sweated, bled for your project, and then…. you reveal it’s glory in the next row of images.
+
+
+
+
+
+ You can also have artistically styled 2/3 + 1/3 images, like these.
+
+
+
+
+The code is simple. Just add a col class to your image, and another class specifying the width: one, two, or three columns wide. Here’s the code for the last row of images above:
+
+
+
+
+
+
+
+
+
+
+
+
+
+
Ted Cybulski | publications
+
+
+
+
+
+
+
+
+2013
+
+
+
+
+ Physical principles for scalable neural recording
+
+
+
+
+
+ Maguire, Yael G,
+
+
+
+
+
+
+
+ Shapiro, Mikhail G,
+
+
+
+
+
+
+ Cybulski, Thaddeus R ,
+
+
+
+
+
+
+ Glaser, Joshua I,
+
+
+
+
+
+
+
+ Amodei, Dario,
+
+
+
+
+
+
+
+ Stranges, P Benjamin,
+
+
+
+
+
+
+
+ Kalhor, Reza,
+
+
+
+
+
+
+
+ Dalrymple, David A,
+
+
+
+
+
+
+
+ Seo, Dongjin,
+
+
+
+
+
+
+
+ Alon, Elad,
+
+
+
+
+
+ and
+
+
+ others,
+
+
+
+
+
+
+
+
+ Frontiers in computational neuroscience
+
+
+ 2013
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ 2014
+
+
+
+
+ Decide now or decide later?: Quantifying the tradeoff between prospective and retrospective access decisions
+
+
+
+
+
+ Zhang, Wen,
+
+
+
+
+
+
+
+ Chen, You,
+
+
+
+
+
+
+ Cybulski, Thaddeus ,
+
+
+
+
+
+
+ Fabbri, Daniel,
+
+
+
+
+
+
+
+ Gunter, Carl,
+
+
+
+
+
+
+
+ Lawlor, Patrick,
+
+
+
+
+
+
+
+ Liebovitz, David,
+
+
+
+
+
+ and
+
+
+ Malin, Bradley
+
+
+
+
+
+
+
+
+ In Proceedings of the 2014 ACM SIGSAC Conference on Computer and Communications Security
+
+
+ 2014
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ 2015
+
+
+
+
+ Spatial information in large-scale neural recordings
+
+
+
+
+ Cybulski, Thaddeus R ,
+
+
+
+
+
+
+ Glaser, Joshua I,
+
+
+
+
+
+
+
+ Marblestone, Adam H,
+
+
+
+
+
+
+
+ Zamft, Bradley M,
+
+
+
+
+
+
+
+ Boyden, Edward S,
+
+
+
+
+
+
+
+ Church, George M,
+
+
+
+
+
+ and
+
+
+ Kording, Konrad P
+
+
+
+
+
+
+
+
+ Frontiers in computational neuroscience
+
+
+ 2015
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ 2017
+
+
+
+
+ Nucleotide-time alignment for molecular recorders
+
+
+
+
+ Cybulski, Thaddeus R ,
+
+
+
+
+
+
+ Boyden, Edward S,
+
+
+
+
+
+
+
+ Church, George M,
+
+
+
+
+
+
+
+ Tyo, Keith EJ,
+
+
+
+
+
+ and
+
+
+ Kording, Konrad P
+
+
+
+
+
+
+
+
+ PLoS computational biology
+
+
+ 2017
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ Toward the Statistical and Biological Realization of DNA Polymerase as a Molecular Recorder
+
+
+
+ and
+
+ Cybulski, Thaddeus R
+
+
+
+
+
+
+
+
+ 2017
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ Scalable passive sleep monitoring using mobile phones: opportunities and obstacles
+
+
+
+
+
+ Saeb, Sohrab,
+
+
+
+
+
+
+ Cybulski, Thaddeus R ,
+
+
+
+
+
+
+ Schueller, Stephen M,
+
+
+
+
+
+
+
+ Kording, Konrad P,
+
+
+
+
+
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+ Journal of medical Internet research
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+ 2018
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+ High-resolution mapping of DNA polymerase fidelity using nucleotide imbalances and next-generation sequencing
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+ Paz, Alexandra M,
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+ Cybulski, Thaddeus R ,
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+ Marblestone, Adam H,
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+ Zamft, Bradley M,
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+ Church, George M,
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+ Boyden, Edward S,
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+ Kording, Konrad P,
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+ Tyo, Keith E J
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+ Nucleic acids research
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+ 2018
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+ Development of novel metabolite-responsive transcription factors via transposon-mediated protein fusion
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+ Younger, Andrew KD,
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+ Su, Peter Y,
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+ Shepard, Andrea J,
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+ Udani, Shreya V,
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+ Cybulski, Thaddeus R ,
+
+
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+ Tyo, Keith EJ,
+
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+ and
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+ Leonard, Joshua N
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+ Protein Engineering, Design and Selection
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+
+
+
+
+
+
+
- {% endif %}
- {% if page.profile.address %}
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