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#### Microscopy / Segmentation
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##### Tutorials
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[Bio-image Analysis Notebooks] - Large collection of image processing workflows, including [point-spread-function estimation](https://haesleinhuepf.github.io/BioImageAnalysisNotebooks/18a_deconvolution/extract_psf.html) and [deconvolution](https://haesleinhuepf.github.io/BioImageAnalysisNotebooks/18a_deconvolution/introduction_deconvolution.html), [3D cell segmentation](https://haesleinhuepf.github.io/BioImageAnalysisNotebooks/20_image_segmentation/Segmentation_3D.html), [feature extraction](https://haesleinhuepf.github.io/BioImageAnalysisNotebooks/22_feature_extraction/statistics_with_pyclesperanto.html) using [pyclesperanto](https://github.com/clEsperanto/pyclesperanto_prototype) and others.
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[Bio-image Analysis Notebooks](https://haesleinhuepf.github.io/BioImageAnalysisNotebooks/intro.html) - Large collection of image processing workflows, including [point-spread-function estimation](https://haesleinhuepf.github.io/BioImageAnalysisNotebooks/18a_deconvolution/extract_psf.html) and [deconvolution](https://haesleinhuepf.github.io/BioImageAnalysisNotebooks/18a_deconvolution/introduction_deconvolution.html), [3D cell segmentation](https://haesleinhuepf.github.io/BioImageAnalysisNotebooks/20_image_segmentation/Segmentation_3D.html), [feature extraction](https://haesleinhuepf.github.io/BioImageAnalysisNotebooks/22_feature_extraction/statistics_with_pyclesperanto.html) using [pyclesperanto](https://github.com/clEsperanto/pyclesperanto_prototype) and others.
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##### Datasets
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[jump-cellpainting](https://github.com/jump-cellpainting/datasets) - Cellpainting dataset.
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[nnUnet](https://github.com/MIC-DKFZ/nnUNet) - 3D biomedical image segmentation.
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[atomai](https://github.com/pycroscopy/atomai) - Deep and Machine Learning for Microscopy.
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[allencell](https://www.allencell.org/segmenter.html) - Tools for the 3D segmentation of intracellular structures.
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[py-clesperanto](https://github.com/clesperanto/pyclesperanto_prototype/) - Tools for 3D microsopy analysis, [deskewing](https://github.com/clEsperanto/pyclesperanto_prototype/blob/master/demo/transforms/deskew.ipynb and lots of other tutorials, interacts with napari.
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[py-clesperanto](https://github.com/clesperanto/pyclesperanto_prototype/) - Tools for 3D microsopy analysis, [deskewing](https://github.com/clEsperanto/pyclesperanto_prototype/blob/master/demo/transforms/deskew.ipynb) and lots of other tutorials, interacts with napari.
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[ashlar](https://github.com/labsyspharm/ashlar) - Image stitching and registration.
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#### Domain Adaptation / Batch-Effect Correction

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