CU-8694vxcyx: Update installed medcat version in notebooks to 1.12 (#24)

mart-r · web-flow · commit 2282a6721a0b · 2024-06-26T12:55:50.000+01:00
diff --git a/notebooks/introductory/Part_1_1_OPTIONAL_Logging_With_MedCAT.html b/notebooks/introductory/Part_1_1_OPTIONAL_Logging_With_MedCAT.html
@@ -13095,7 +13095,7 @@ <h1 id="MedCAT-tutorial---logging-with-MedCAT">MedCAT tutorial - logging with Me
 <div class="inner_cell">
     <div class="input_area">
 <div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># Install medcat</span>
-<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.10.0
+<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.12.0
 <span class="k">try</span><span class="p">:</span>
     <span class="kn">from</span> <span class="nn">medcat.cat</span> <span class="kn">import</span> <span class="n">CAT</span>
 <span class="k">except</span><span class="p">:</span>
diff --git a/notebooks/introductory/Part_1_1_OPTIONAL_Logging_With_MedCAT.ipynb b/notebooks/introductory/Part_1_1_OPTIONAL_Logging_With_MedCAT.ipynb
@@ -19,7 +19,7 @@
    "outputs": [],
    "source": [
     "# Install medcat\n",
-    "! pip install medcat~=1.10.0\n",
+    "! pip install medcat~=1.12.0\n",
     "try:\n",
     "    from medcat.cat import CAT\n",
     "except:\n",
diff --git a/notebooks/introductory/Part_3_1_Building_a_Concept_Database_and_Vocabulary.html b/notebooks/introductory/Part_3_1_Building_a_Concept_Database_and_Vocabulary.html
@@ -13099,7 +13099,7 @@ <h3 id="First-we-need-to-install-MedCAT">First we need to install MedCAT<a class
 <div class="inner_cell">
     <div class="input_area">
 <div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># Install MedCAT</span>
-<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.10.0
+<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.12.0
 <span class="c1"># Get the scispacy model</span>
 <span class="o">!</span> python -m spacy download en_core_web_md
 <span class="k">try</span><span class="p">:</span>
diff --git a/notebooks/introductory/Part_3_1_Building_a_Concept_Database_and_Vocabulary.ipynb b/notebooks/introductory/Part_3_1_Building_a_Concept_Database_and_Vocabulary.ipynb
@@ -322,7 +322,7 @@
    ],
    "source": [
     "# Install MedCAT\n",
-    "! pip install medcat~=1.10.0\n",
+    "! pip install medcat~=1.12.0\n",
     "# Get the scispacy model\n",
     "! python -m spacy download en_core_web_md\n",
     "try:\n",
diff --git a/notebooks/introductory/Part_3_2_Extracting_Diseases_from_Electronic_Health_Records.html b/notebooks/introductory/Part_3_2_Extracting_Diseases_from_Electronic_Health_Records.html
@@ -13092,7 +13092,7 @@ <h1 id="Now-let's-start-extracting-concepts-from-unstructured-text!">Now let's s
 <div class="inner_cell">
     <div class="input_area">
 <div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># Install medcat</span>
-<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.10.0
+<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.12.0
 <span class="c1"># install seaborn</span>
 <span class="o">!</span> pip install seaborn
 <span class="k">try</span><span class="p">:</span>
@@ -14706,10 +14706,10 @@ <h2 id="Use-Multiprocessing">Use Multiprocessing<a class="anchor-link" href="#Us
 
  
  
-<div id="32d831b3-f19d-4057-9c5b-ec8b82685814"></div>
+<div id="32ee3419-be25-428c-a2b3-2371035ddec6"></div>
 <div class="output_subarea output_widget_view ">
 <script type="text/javascript">
-var element = $('#32d831b3-f19d-4057-9c5b-ec8b82685814');
+var element = $('#32ee3419-be25-428c-a2b3-2371035ddec6');
 </script>
 <script type="application/vnd.jupyter.widget-view+json">
 {"model_id": "05b18c97da9d4d05b9280df006a5fb82", "version_major": 2, "version_minor": 0}
diff --git a/notebooks/introductory/Part_3_2_Extracting_Diseases_from_Electronic_Health_Records.ipynb b/notebooks/introductory/Part_3_2_Extracting_Diseases_from_Electronic_Health_Records.ipynb
@@ -275,7 +275,7 @@
    ],
    "source": [
     "# Install medcat\n",
-    "! pip install medcat~=1.10.0\n",
+    "! pip install medcat~=1.12.0\n",
     "# install seaborn\n",
     "! pip install seaborn\n",
     "try:\n",
diff --git a/notebooks/introductory/Part_3_3_Model_technical_optimisations.html b/notebooks/introductory/Part_3_3_Model_technical_optimisations.html
@@ -13092,7 +13092,7 @@ <h1 id="Now-let's-look-at-ways-to-optimise-the-model-for-our-specific-use-case">
 <div class="inner_cell">
     <div class="input_area">
 <div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># Install medcat</span>
-<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.10.0
+<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.12.0
 <span class="k">try</span><span class="p">:</span>
     <span class="kn">from</span> <span class="nn">medcat.cat</span> <span class="kn">import</span> <span class="n">CAT</span>
 <span class="k">except</span><span class="p">:</span>
diff --git a/notebooks/introductory/Part_3_3_Model_technical_optimisations.ipynb b/notebooks/introductory/Part_3_3_Model_technical_optimisations.ipynb
@@ -165,7 +165,7 @@
    ],
    "source": [
     "# Install medcat\n",
-    "! pip install medcat~=1.10.0\n",
+    "! pip install medcat~=1.12.0\n",
     "try:\n",
     "    from medcat.cat import CAT\n",
     "except:\n",
diff --git a/notebooks/introductory/Part_4_1_ByteLevelBPETokenizer_and_Embeddings.html b/notebooks/introductory/Part_4_1_ByteLevelBPETokenizer_and_Embeddings.html
@@ -13085,7 +13085,7 @@
 <div class="inner_cell">
     <div class="input_area">
 <div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># Install medcat</span>
-<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.10.0
+<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.12.0
 <span class="k">try</span><span class="p">:</span>
     <span class="kn">from</span> <span class="nn">medcat.cat</span> <span class="kn">import</span> <span class="n">CAT</span>
 <span class="k">except</span><span class="p">:</span>
diff --git a/notebooks/introductory/Part_4_1_ByteLevelBPETokenizer_and_Embeddings.ipynb b/notebooks/introductory/Part_4_1_ByteLevelBPETokenizer_and_Embeddings.ipynb
@@ -265,7 +265,7 @@
    ],
    "source": [
     "# Install medcat\n",
-    "! pip install medcat~=1.10.0\n",
+    "! pip install medcat~=1.12.0\n",
     "try:\n",
     "    from medcat.cat import CAT\n",
     "except:\n",
diff --git a/notebooks/introductory/Part_4_2_Supervised_Training_and_Meta_annotations.html b/notebooks/introductory/Part_4_2_Supervised_Training_and_Meta_annotations.html
@@ -13085,7 +13085,7 @@
 <div class="inner_cell">
     <div class="input_area">
 <div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># Install medcat</span>
-<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.10.0
+<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.12.0
 <span class="c1"># Get the spacy model</span>
 <span class="o">!</span> python -m spacy download en_core_web_md
 <span class="k">try</span><span class="p">:</span>
@@ -13859,10 +13859,10 @@ <h2 id="Fine-tuning-the-NER+L&#160;model">Fine-tuning the NER+L&#160;model<a cla
 
  
  
-<div id="97a59b96-c389-409a-8457-732acfff3f84"></div>
+<div id="f7f355c5-69e7-4db0-b862-0108bbf9a1a5"></div>
 <div class="output_subarea output_widget_view ">
 <script type="text/javascript">
-var element = $('#97a59b96-c389-409a-8457-732acfff3f84');
+var element = $('#f7f355c5-69e7-4db0-b862-0108bbf9a1a5');
 </script>
 <script type="application/vnd.jupyter.widget-view+json">
 {"model_id": "6fd10f1692234019836a7b40e83b56dd", "version_major": 2, "version_minor": 0}
@@ -13881,10 +13881,10 @@ <h2 id="Fine-tuning-the-NER+L&#160;model">Fine-tuning the NER+L&#160;model<a cla
 
  
  
-<div id="949bb97a-d72f-4166-b47d-d4ffe721894c"></div>
+<div id="1cd864ed-2f26-414a-9e7b-cca661359203"></div>
 <div class="output_subarea output_widget_view ">
 <script type="text/javascript">
-var element = $('#949bb97a-d72f-4166-b47d-d4ffe721894c');
+var element = $('#1cd864ed-2f26-414a-9e7b-cca661359203');
 </script>
 <script type="application/vnd.jupyter.widget-view+json">
 {"model_id": "9a5ab9cfecc242b7aaf0f140e87bdde6", "version_major": 2, "version_minor": 0}
@@ -13963,10 +13963,10 @@ <h2 id="Fine-tuning-the-NER+L&#160;model">Fine-tuning the NER+L&#160;model<a cla
 
  
  
-<div id="39e15e56-fb47-4b4b-bc54-840980738477"></div>
+<div id="6960f9a5-5688-4564-873d-9adbd34be108"></div>
 <div class="output_subarea output_widget_view ">
 <script type="text/javascript">
-var element = $('#39e15e56-fb47-4b4b-bc54-840980738477');
+var element = $('#6960f9a5-5688-4564-873d-9adbd34be108');
 </script>
 <script type="application/vnd.jupyter.widget-view+json">
 {"model_id": "434496e448984f55925d22fad0349ada", "version_major": 2, "version_minor": 0}
@@ -13985,10 +13985,10 @@ <h2 id="Fine-tuning-the-NER+L&#160;model">Fine-tuning the NER+L&#160;model<a cla
 
  
  
-<div id="05772180-dbe8-451b-a09a-c4435304092d"></div>
+<div id="63d7255b-e667-4bea-af37-72e5372a0883"></div>
 <div class="output_subarea output_widget_view ">
 <script type="text/javascript">
-var element = $('#05772180-dbe8-451b-a09a-c4435304092d');
+var element = $('#63d7255b-e667-4bea-af37-72e5372a0883');
 </script>
 <script type="application/vnd.jupyter.widget-view+json">
 {"model_id": "f7d1803b3c6c4197b6612c5fdf189746", "version_major": 2, "version_minor": 0}
@@ -14007,10 +14007,10 @@ <h2 id="Fine-tuning-the-NER+L&#160;model">Fine-tuning the NER+L&#160;model<a cla
 
  
  
-<div id="4a031d0b-0138-4bde-ab47-a769a96bec8d"></div>
+<div id="dd55a253-1bc0-4801-a02f-de6f7145ad2f"></div>
 <div class="output_subarea output_widget_view ">
 <script type="text/javascript">
-var element = $('#4a031d0b-0138-4bde-ab47-a769a96bec8d');
+var element = $('#dd55a253-1bc0-4801-a02f-de6f7145ad2f');
 </script>
 <script type="application/vnd.jupyter.widget-view+json">
 {"model_id": "c8d633f579de438a916d9ef3de9d8fe0", "version_major": 2, "version_minor": 0}
@@ -14029,10 +14029,10 @@ <h2 id="Fine-tuning-the-NER+L&#160;model">Fine-tuning the NER+L&#160;model<a cla
 
  
  
-<div id="9b3536c0-957e-4873-97cf-0e5b64fd2cb4"></div>
+<div id="8dcdb0a2-c5bc-47ba-b4d8-98752ad7d19c"></div>
 <div class="output_subarea output_widget_view ">
 <script type="text/javascript">
-var element = $('#9b3536c0-957e-4873-97cf-0e5b64fd2cb4');
+var element = $('#8dcdb0a2-c5bc-47ba-b4d8-98752ad7d19c');
 </script>
 <script type="application/vnd.jupyter.widget-view+json">
 {"model_id": "de6c01c6983041e2b972f6008caefaea", "version_major": 2, "version_minor": 0}
@@ -14051,10 +14051,10 @@ <h2 id="Fine-tuning-the-NER+L&#160;model">Fine-tuning the NER+L&#160;model<a cla
 
  
  
-<div id="0c50692e-679a-4580-a98c-d9b7c5a7b647"></div>
+<div id="276a076a-ba10-46e9-bfe6-4b148d823c15"></div>
 <div class="output_subarea output_widget_view ">
 <script type="text/javascript">
-var element = $('#0c50692e-679a-4580-a98c-d9b7c5a7b647');
+var element = $('#276a076a-ba10-46e9-bfe6-4b148d823c15');
 </script>
 <script type="application/vnd.jupyter.widget-view+json">
 {"model_id": "05132c907a874fe2a2eb9cb6c81da3b3", "version_major": 2, "version_minor": 0}
@@ -17502,10 +17502,10 @@ <h2 id="Fine-tuning-the-NER+L&#160;model">Fine-tuning the NER+L&#160;model<a cla
 
  
  
-<div id="0831575f-3f80-433f-8e19-3ac896196ba2"></div>
+<div id="0345720f-a2f0-4660-a340-9c6e7ef44710"></div>
 <div class="output_subarea output_widget_view ">
 <script type="text/javascript">
-var element = $('#0831575f-3f80-433f-8e19-3ac896196ba2');
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 </script>
 <script type="application/vnd.jupyter.widget-view+json">
 {"model_id": "00325922360c45009329d82ed6420f16", "version_major": 2, "version_minor": 0}
@@ -17524,10 +17524,10 @@ <h2 id="Fine-tuning-the-NER+L&#160;model">Fine-tuning the NER+L&#160;model<a cla
 
  
  
-<div id="09e4a13d-2327-4e85-87d4-3d2777ffc588"></div>
+<div id="293c269d-d3e1-472b-8a2d-c983f9bd3529"></div>
 <div class="output_subarea output_widget_view ">
 <script type="text/javascript">
-var element = $('#09e4a13d-2327-4e85-87d4-3d2777ffc588');
+var element = $('#293c269d-d3e1-472b-8a2d-c983f9bd3529');
 </script>
 <script type="application/vnd.jupyter.widget-view+json">
 {"model_id": "d48e2f4d6dd3467fb3f17e0244b0e361", "version_major": 2, "version_minor": 0}
diff --git a/notebooks/introductory/Part_4_2_Supervised_Training_and_Meta_annotations.ipynb b/notebooks/introductory/Part_4_2_Supervised_Training_and_Meta_annotations.ipynb
@@ -302,7 +302,7 @@
    ],
    "source": [
     "# Install medcat\n",
-    "! pip install medcat~=1.10.0\n",
+    "! pip install medcat~=1.12.0\n",
     "# Get the spacy model\n",
     "! python -m spacy download en_core_web_md\n",
     "try:\n",
diff --git a/notebooks/introductory/Part_4_3_Annotating_documents_with_the_full_MedCAT_pipeline_with_MetaAnnotations.html b/notebooks/introductory/Part_4_3_Annotating_documents_with_the_full_MedCAT_pipeline_with_MetaAnnotations.html
@@ -13085,7 +13085,7 @@
 <div class="inner_cell">
     <div class="input_area">
 <div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># Install medcat</span>
-<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.10.0
+<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.12.0
 <span class="c1"># install seaborn</span>
 <span class="o">!</span> pip install seaborn
 <span class="k">try</span><span class="p">:</span>
diff --git a/notebooks/introductory/Part_4_3_Annotating_documents_with_the_full_MedCAT_pipeline_with_MetaAnnotations.ipynb b/notebooks/introductory/Part_4_3_Annotating_documents_with_the_full_MedCAT_pipeline_with_MetaAnnotations.ipynb
@@ -265,7 +265,7 @@
    ],
    "source": [
     "# Install medcat\n",
-    "! pip install medcat~=1.10.0\n",
+    "! pip install medcat~=1.12.0\n",
     "# install seaborn\n",
     "! pip install seaborn\n",
     "try:\n",
diff --git a/notebooks/introductory/Part_5_Prevalence_of_Physical_and_Mental_Diseases.html b/notebooks/introductory/Part_5_Prevalence_of_Physical_and_Mental_Diseases.html
@@ -13085,7 +13085,7 @@
 <div class="inner_cell">
     <div class="input_area">
 <div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># Install medcat</span>
-<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.10.0
+<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.12.0
 <span class="c1"># install seaborn</span>
 <span class="o">!</span> pip install seaborn
 <span class="k">try</span><span class="p">:</span>
diff --git a/notebooks/introductory/Part_5_Prevalence_of_Physical_and_Mental_Diseases.ipynb b/notebooks/introductory/Part_5_Prevalence_of_Physical_and_Mental_Diseases.ipynb
@@ -265,7 +265,7 @@
    ],
    "source": [
     "# Install medcat\n",
-    "! pip install medcat~=1.10.0\n",
+    "! pip install medcat~=1.12.0\n",
     "# install seaborn\n",
     "! pip install seaborn\n",
     "try:\n",
diff --git a/notebooks/specialised/Comparing_Models_with_RegressionSuite.html b/notebooks/specialised/Comparing_Models_with_RegressionSuite.html
@@ -13115,7 +13115,7 @@ <h1 id="Comparing-models-using-regression-test-tooling">Comparing models using r
 <div class="inner_cell">
     <div class="input_area">
 <div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># Install medcat</span>
-<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.10.0 # regression suite fully available starting version <span class="m">1</span>.7.0
+<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.12.0 # regression suite fully available starting version <span class="m">1</span>.7.0
 <span class="k">try</span><span class="p">:</span>
     <span class="kn">from</span> <span class="nn">medcat.cat</span> <span class="kn">import</span> <span class="n">CAT</span>
 <span class="k">except</span><span class="p">:</span>
diff --git a/notebooks/specialised/Comparing_Models_with_RegressionSuite.ipynb b/notebooks/specialised/Comparing_Models_with_RegressionSuite.ipynb
@@ -176,7 +176,7 @@
    ],
    "source": [
     "# Install medcat\n",
-    "! pip install medcat~=1.10.0 # regression suite fully available starting version 1.7.0\n",
+    "! pip install medcat~=1.12.0 # regression suite fully available starting version 1.7.0\n",
     "try:\n",
     "    from medcat.cat import CAT\n",
     "except:\n",
