references.rst

References

Contents

• ANOVA related
  • The ANOVA analysis
  • The ANOVA results
  • The ANOVA report
• Statistical Tools
• Readers
  • IC50, Genomic Features, Drug Decode
  • OmniBEM related
• Visualisation
  • Volcano plot
  • Boxplot and beeswarm
• reports
• Data-related
• Logistics
• Regression Analysis
  • Common Regression class
  • Lasso
  • ElasticNet
  • Ridge
  • Report
• Data Packages
• MISC

ANOVA related

The ANOVA analysis

.. automodule:: gdsctools.anova
    :members:
    :undoc-members:

The ANOVA results

.. automodule:: gdsctools.anova_results
    :members:
    :undoc-members:

The ANOVA report

.. automodule:: gdsctools.anova_report
    :members:
    :undoc-members:

Statistical Tools

.. automodule:: gdsctools.stats
    :members:
    :undoc-members:

.. automodule:: gdsctools.qvalue
    :members:
    :undoc-members:

Readers

IC50, Genomic Features, Drug Decode

.. automodule:: gdsctools.readers
    :members:
    :undoc-members:

OmniBEM related

.. automodule:: gdsctools.omnibem
    :members:
    :undoc-members:

.. automodule:: gdsctools.gdsc1000
    :members:
    :undoc-members:

Visualisation

Volcano plot

.. automodule:: gdsctools.volcano
    :members:
    :undoc-members:

Boxplot and beeswarm

.. automodule:: gdsctools.boxswarm
    :members:
    :undoc-members:

.. automodule:: gdsctools.boxplots
    :members:
    :undoc-members:

reports

.. automodule:: gdsctools.report
    :members:
    :undoc-members:

Data-related

.. automodule:: gdsctools.tissues
    :members:
    :undoc-members:

.. automodule:: gdsctools.datasets
    :members:
    :undoc-members:

.. automodule:: gdsctools.cosmictools
    :members:
    :undoc-members:

Logistics

.. automodule:: gdsctools.logistics
    :members:
    :undoc-members:

Regression Analysis

Common Regression class

.. autoclass:: gdsctools.regression.Regression
    :members:
    :undoc-members:

Lasso

.. autoclass:: gdsctools.regression.GDSCLasso
    :members:
    :undoc-members:

ElasticNet

.. autoclass:: gdsctools.regression.GDSCElasticNet
    :members:
    :undoc-members:

Ridge

.. autoclass:: gdsctools.regression.GDSCRidge
    :members:
    :undoc-members:

Report

.. automodule:: gdsctools.regression_report
    :members:
    :undoc-members:

Data Packages

.. automodule:: gdsctools.gdsc
    :members:
    :undoc-members:

MISC

.. automodule:: gdsctools.tools
    :members:
    :undoc-members:

.. automodule:: gdsctools.settings
    :members:
    :undoc-members:

.. automodule:: gdsctools.drugs
    :members:
    :undoc-members:

.. automodule:: gdsctools.models
    :members:
    :undoc-members:

.. automodule:: gdsctools.errors
    :members:
    :undoc-members: